RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3825
(332 letters)
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 291 bits (748), Expect = 2e-95
Identities = 116/320 (36%), Positives = 158/320 (49%), Gaps = 99/320 (30%)
Query: 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD-NEQTNIPNVFAVGDVL 68
+++ E Y+TV++AIGR A T + + GVK+ + KI EQTN+P ++A+GD+L
Sbjct: 297 EEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDIL 356
Query: 69 HEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGA 128
+K ELTPVA+QAG+LLA RLY T + DY+NV TTVFTPLEYG GLSEEKA E +G
Sbjct: 357 EDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGE 416
Query: 129 DNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYY 188
+N+E+YH+Y+
Sbjct: 417 ENIEVYHSYF-------------------------------------------------- 426
Query: 189 KPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNP 248
P E+ IP R+ +CY KI
Sbjct: 427 WPLEWTIPSRDNNKCYAKI----------------------------------------- 445
Query: 249 QRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEE 308
+C ++V+G H +GPNAGEV QG+AAA+KCGLT + L+ST+GIHP AE
Sbjct: 446 -------ICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEV 498
Query: 309 FTRVTITKRSGEDPTPQSCC 328
FT +++TKRSG C
Sbjct: 499 FTTLSVTKRSGASILQAGSC 518
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 285 bits (731), Expect = 2e-93
Identities = 119/322 (36%), Positives = 158/322 (49%), Gaps = 99/322 (30%)
Query: 5 TGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD-NEQTNIPNVFA 63
+ K T+DTVL AIGR T + AG+ P+N KI D E T++P+++A
Sbjct: 264 EDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYA 323
Query: 64 VGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAE 123
+GDV +PELTP A++AGKLLA RL+G +T MDY NV TTVFTPLEYGCVGLSEE+A
Sbjct: 324 IGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAV 383
Query: 124 ELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVI 183
L+G +++E+YHAYYKP EF + R+ +
Sbjct: 384 ALHGQEHVEVYHAYYKPLEFTVADRDASQ------------------------------- 412
Query: 184 YHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFI 243
CY+K+
Sbjct: 413 -------------------CYIKM------------------------------------ 417
Query: 244 PQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHP 303
VC R PQ VLG+HF+GPNAGEV QG+A +KCG ++ + TVGIHP
Sbjct: 418 ------------VCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHP 465
Query: 304 TLAEEFTRVTITKRSGEDPTPQ 325
T +EE ++ I+KRSG +PT
Sbjct: 466 TCSEEVVKLHISKRSGLEPTVT 487
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 281 bits (722), Expect = 8e-91
Identities = 105/318 (33%), Positives = 145/318 (45%), Gaps = 98/318 (30%)
Query: 11 KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHE 70
K FE+ ++TV+ A+GR + GVK+ + +D+EQT + NV+A+GD+
Sbjct: 378 KKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAG 437
Query: 71 KPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADN 130
KP+LTPVA+QAG+ LA RL+ T DY NVATTVFTPLEYG GLSEE A E YG +
Sbjct: 438 KPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKD 497
Query: 131 LEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKP 190
+E+YH+ + KP
Sbjct: 498 IEVYHSNF--------------------------------------------------KP 507
Query: 191 TEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR 250
E+ + R CY+K+
Sbjct: 508 LEWTVAHREDNVCYMKL------------------------------------------- 524
Query: 251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFT 310
VC ++ +VLG+H +GPNAGE+ QGYA A+K G T + T+GIHPT +E FT
Sbjct: 525 -----VCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKADFDRTIGIHPTCSETFT 579
Query: 311 RVTITKRSGEDPTPQSCC 328
+ +TK+SG P CC
Sbjct: 580 TLHVTKKSGVSPIVSGCC 597
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 272 bits (697), Expect = 2e-88
Identities = 133/317 (41%), Positives = 165/317 (52%), Gaps = 99/317 (31%)
Query: 5 TGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAV 64
+ ED YDTVL AIGR+ L ++ + NAGV V + +D E TN+ N++AV
Sbjct: 266 KNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVD-SQEATNVANIYAV 324
Query: 65 GDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
GD+++ KPELTPVAV AG+LLA RLYG T +MDY++VATTVFTPLEY CVGLSEE A +
Sbjct: 325 GDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVK 384
Query: 125 LYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIY 184
+GAD +E++H YY
Sbjct: 385 QFGADEIEVFHGYY---------------------------------------------- 398
Query: 185 HAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIP 244
KPTEFFIPQ++ + CYLK
Sbjct: 399 ----KPTEFFIPQKSVRYCYLKA------------------------------------- 417
Query: 245 QRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPT 304
V ER Q+V G+H+IGP AGEVIQG+AAA+K GLT TL +TVGIHPT
Sbjct: 418 -----------VAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPT 466
Query: 305 LAEEFTRVTITKRSGED 321
AEEFTR+ ITKRSG D
Sbjct: 467 TAEEFTRLAITKRSGLD 483
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 250 bits (640), Expect = 5e-80
Identities = 77/313 (24%), Positives = 118/313 (37%), Gaps = 103/313 (32%)
Query: 14 EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
+ +D+V+ A+GR T + + AG++V + TN+P V+A+GD+ + +
Sbjct: 250 LEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDITG-RDQ 308
Query: 74 LTPVAVQAGKLLAARLY-GNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLE 132
LTPVA+ AG+ LA RL+ G ++DY N+ T VF VGLSE +A E G D L
Sbjct: 309 LTPVAIAAGRRLAERLFDGQSERKLDYDNIPTVVFAHPPLSKVGLSEPEARERLG-DVLT 367
Query: 133 IYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTE 192
+Y + P
Sbjct: 368 VYETSF--------------------------------------------------TPMR 377
Query: 193 FFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCY 252
+ + + +
Sbjct: 378 YALNEH-------------------------------------------------GPKTA 388
Query: 253 LKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRV 312
+K+VC Q+V+G+H IG A E++QG+A AVK G T ++TV IHP AEE +
Sbjct: 389 MKLVCA-GPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTVAIHPGSAEELVTL 447
Query: 313 TITKRSGEDPTPQ 325
R DP P+
Sbjct: 448 KEPVRRPGDPLPE 460
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 247 bits (632), Expect = 1e-78
Identities = 73/307 (23%), Positives = 116/307 (37%), Gaps = 102/307 (33%)
Query: 5 TGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAV 64
G D +L AIGR T++ +++ G++ + I + + TN+ ++AV
Sbjct: 270 PGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAV 329
Query: 65 GDVLHEKPELTPVAVQAGKLLAARLYGNG-TTQMDYQNVATTVFTPLEYGCVGLSEEKAE 123
GDV K LTPVA+ AG+ LA RL+ +++DY N+ T VF+ G VGL+E++A
Sbjct: 330 GDVCG-KALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAI 388
Query: 124 ELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVI 183
YG +N++ Y +
Sbjct: 389 HKYGIENVKTYSTSF--------------------------------------------- 403
Query: 184 YHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFI 243
P + +R
Sbjct: 404 -----TPMYHAVTKR--------------------------------------------- 413
Query: 244 PQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHP 303
+C +K+VC +KV+G+H G E++QG+A AVK G T ++TV IHP
Sbjct: 414 ----KTKCVMKMVCA-NKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHP 468
Query: 304 TLAEEFT 310
T +EE
Sbjct: 469 TSSEELV 475
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 246 bits (630), Expect = 4e-78
Identities = 66/318 (20%), Positives = 105/318 (33%), Gaps = 107/318 (33%)
Query: 14 EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
D V+MAIGR T + + N GVK+ P+ + +TN+PN++A+GD+ +
Sbjct: 278 TLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITD-RLM 336
Query: 74 LTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
LTPVA+ G L ++GN + D+ VA+ VF+ G GL EE A + + + + +
Sbjct: 337 LTPVAINEGAALVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKEF--EKVAV 394
Query: 134 YHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEF 193
Y + + P
Sbjct: 395 YMSSF--------------------------------------------------TPLMH 404
Query: 194 FIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYL 253
I ++ KI
Sbjct: 405 NISGSKYKKFVAKI---------------------------------------------- 418
Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTR-- 311
V + VLG+H +G A E+IQ ++ +T+G+HPT AEE
Sbjct: 419 --VTN-HSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEELCSMR 475
Query: 312 ---VTITKRSGEDPTPQS 326
K + P S
Sbjct: 476 TPSYYYVKGEKMEKLPDS 493
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 237 bits (608), Expect = 2e-75
Identities = 75/298 (25%), Positives = 114/298 (38%), Gaps = 102/298 (34%)
Query: 14 EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
+T D ++ AIGR + + AGVK + + + TNI ++AVGD E
Sbjct: 251 SETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTG-AVE 309
Query: 74 LTPVAVQAGKLLAARLYGNGTTQ-MDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLE 132
LTPVAV AG+ L+ RL+ N + +DY N+ T VF+ G VGL+E +A E YG D ++
Sbjct: 310 LTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVK 369
Query: 133 IYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTE 192
+Y + +
Sbjct: 370 VYKSSF--------------------------------------------------TAMY 379
Query: 193 FFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCY 252
+ Q C
Sbjct: 380 TAVTTH-------------------------------------------------RQPCR 390
Query: 253 LKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFT 310
+K+VC + +K++G+H IG E++QG+A A+K G T + ++TV IHPT AEEF
Sbjct: 391 MKLVCV-GSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFV 447
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 238 bits (609), Expect = 4e-75
Identities = 65/317 (20%), Positives = 102/317 (32%), Gaps = 105/317 (33%)
Query: 14 EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
E YD V++AIGR ++ + AGV+V A +TN+ N++A+GDV +
Sbjct: 274 EADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTD-RVM 332
Query: 74 LTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
LTPVA+ G ++ N D+ VA VF+ G G EE A + Y D + +
Sbjct: 333 LTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKY--DQVAV 390
Query: 134 YHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEF 193
Y + + P
Sbjct: 391 YESSF--------------------------------------------------TPLMH 400
Query: 194 FIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYL 253
I ++ ++I
Sbjct: 401 NISGSTYKKFMVRI---------------------------------------------- 414
Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTR-- 311
V A +VLG+H +G ++ E+IQ A +K G +T+G+HPT AEE
Sbjct: 415 --VTN-HADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMR 471
Query: 312 -VTITKRSGEDPTPQSC 327
G+
Sbjct: 472 TPAYFYEKGKRVEKIDS 488
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 236 bits (605), Expect = 1e-74
Identities = 69/309 (22%), Positives = 122/309 (39%), Gaps = 111/309 (35%)
Query: 15 DTYDTVLMAIGRRALTE---ETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEK 71
D D ++ IGR++ E N G+K+ + I + + TN+PN++++GDV+ K
Sbjct: 272 DDVDELIWTIGRKSHLGMGSE----NVGIKLNSHDQIIADEYQNTNVPNIYSLGDVVG-K 326
Query: 72 PELTPVAVQAGKLLAARLYGN---GTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGA 128
ELTPVA+ AG+ L+ RL+G ++DY+NV + +F+ E G +G+SE++A E YG
Sbjct: 327 VELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSIGISEKEAIEKYGK 386
Query: 129 DNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYY 188
+N+++Y++ +
Sbjct: 387 ENIKVYNSKF-------------------------------------------------- 396
Query: 189 KPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNP 248
+ +
Sbjct: 397 TAMYYAMLSE-------------------------------------------------K 407
Query: 249 QRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEE 308
K+VC +KV+G+H +G ++ E++QG+ A+K G T ++ V IHPT AEE
Sbjct: 408 SPTRYKIVCA-GPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNCVAIHPTSAEE 466
Query: 309 FTRVTITKR 317
+ +
Sbjct: 467 LVTMRGSHH 475
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 191 bits (487), Expect = 2e-57
Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 4/145 (2%)
Query: 14 EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
E D V++A+GR T + AGV+ A I +T+ P ++A+GDV + +
Sbjct: 254 EIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTD-RVQ 312
Query: 74 LTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
LTPVA+ Y N T D+ +AT VF+ E G VG++EE+A + +E+
Sbjct: 313 LTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARKFQ--EIEV 370
Query: 134 YHAYYKPTEFFIPQRNPQRCYLKFI 158
Y A ++P + + R ++ +K +
Sbjct: 371 YRAEFRPMKATLSGR-KEKTIMKLV 394
Score = 125 bits (317), Expect = 7e-33
Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
+++Y A ++P + + R ++ +K+V AA +KV+G H +G +AGE+ Q +++
Sbjct: 368 IEVYRAEFRPMKATLSGR-KEKTIMKLVVN-AADRKVVGAHILGHDAGEMAQLLGISLRA 425
Query: 289 GLTFETLESTVGIHPTLAEEFTR---VTITKRSGE 320
G T + + T+ +HPT AEE + R+GE
Sbjct: 426 GCTKDDFDRTMAVHPTAAEELVTMYQPSYRVRNGE 460
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 187 bits (477), Expect = 1e-55
Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 4/145 (2%)
Query: 14 EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
D V++A GR T + AGVKV A + + TN+ +++AVGDV +
Sbjct: 274 TICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVTG-HIQ 332
Query: 74 LTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
LTPVA+ + N +T DY + T VF+ E G VGLSEE A Y +EI
Sbjct: 333 LTPVAIHDAMCFVKNAFENTSTTPDYDLITTAVFSQPEIGTVGLSEEDALHRYK--RVEI 390
Query: 134 YHAYYKPTEFFIPQRNPQRCYLKFI 158
Y ++P + P++ ++K +
Sbjct: 391 YRTVFRPMRNVLSGS-PEKMFMKLV 414
Score = 128 bits (325), Expect = 8e-34
Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
++IY ++P + P++ ++K+V + + V+G H +G NAGE+ Q ++K
Sbjct: 388 VEIYRTVFRPMRNVLSGS-PEKMFMKLVVD-GESRIVVGAHVLGENAGEIAQLIGISLKG 445
Query: 289 GLTFETLESTVGIHPTLAEEFT---RVTITKRSGED 321
LT + + T+ +HPT++EE + + +GE
Sbjct: 446 KLTKDIFDKTMAVHPTMSEELVTMYKPSYVYENGEK 481
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 153 bits (390), Expect = 5e-43
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 37/185 (20%)
Query: 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLH 69
D + +D V+ +GR TE + V+ +D +N++T++ N++AVGD
Sbjct: 257 DGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVD-ENQRTSVNNIYAVGDCCM 315
Query: 70 E---------------------------------KPELTPVAVQAGKLLAARLYGNGTTQ 96
+LTPVA+ AG+LLA RL+ T +
Sbjct: 316 VKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRK 375
Query: 97 MDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQR---NPQRC 153
+Y+ + T +F+ G +GLSEE A ++YG +N++IY + + F + ++
Sbjct: 376 TNYKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKT 435
Query: 154 YLKFI 158
YLK +
Sbjct: 436 YLKLV 440
Score = 105 bits (264), Expect = 2e-25
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 229 LKIYHAYYKPTEFFIPQR---NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAA 285
+KIY + + F + ++ YLK+VC + + G+H IG NA E++QG+A A
Sbjct: 410 VKIYESKFTNLFFSVYDIEPELKEKTYLKLVCV-GKDELIKGLHIIGLNADEIVQGFAVA 468
Query: 286 VKCGLTFETLESTVGIHPTLAEEFTRVT 313
+K T + + T+ IHPT AEEF +T
Sbjct: 469 LKMNATKKDFDETIPIHPTAAEEF--LT 494
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor;
HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP:
c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
3q6j_A*
Length = 523
Score = 89.3 bits (222), Expect = 6e-20
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Query: 16 TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPEL 74
D V + +G + + E A G+ + ++ + QT++PNV+AVGD++ P
Sbjct: 304 ETDFVFLGLGEQPRSAELA-KILGLDL-GPKGEVLVNEYLQTSVPNVYAVGDLIG-GPME 360
Query: 75 TPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGA 128
A ++G A + G +N + T E +G+ EE+A
Sbjct: 361 MFKARKSGCYAARNVMG-EKISYTPKNYPDFLHTHYEVSFLGMGEEEARAAGHE 413
Score = 67.3 bits (165), Expect = 1e-12
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLEST--VGIHPTLAEEFTR 311
K+V + A +KVLG H +G A + Q +K GLT + L + ++PT + +R
Sbjct: 454 KIVID-AKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQLSR 512
Query: 312 VTITKRS 318
+ ++
Sbjct: 513 LRAGSKN 519
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 80.7 bits (200), Expect = 5e-17
Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 17/139 (12%)
Query: 1 MRIATGASMDKV----------FED----TYDTVLMAIGRRALTEETAVSNAGVKVIPEN 46
+R+ A V D LM IG T + G+++ N
Sbjct: 238 VRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGN 297
Query: 47 A-KIDSDNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATT 105
+D +T ++A GD L VA G++ G G + + + VA T
Sbjct: 298 YLTVD-RVSRTLATGIYAAGDCTG-LLPLASVAAMQGRIAMYHALGEGVSPIRLRTVAAT 355
Query: 106 VFTPLEYGCVGLSEEKAEE 124
VFT E VG+ + +
Sbjct: 356 VFTRPEIAAVGVPQSVIDA 374
Score = 60.7 bits (148), Expect = 2e-10
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
K+ C R + V+G + P A E+I A AV+ +T L T+ ++P+L+
Sbjct: 403 KIFC-RRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSG 455
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 78.7 bits (195), Expect = 2e-16
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 16 TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPEL 74
D +L+A GR T A+ AGV V I D +T+ PN++A GD ++P+
Sbjct: 259 RADKLLVATGRTPNTRSLALDAAGVTV-NAQGAIVIDQGMRTSNPNIYAAGDCT-DQPQF 316
Query: 75 TPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
VA AG A + G G +D + VFT + VG SE +A
Sbjct: 317 VYVAAAAGTRAAINMTG-GDAALDLTAMPAVVFTDPQVATVGYSEAEAHH 365
Score = 59.8 bits (146), Expect = 4e-10
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 17/82 (20%)
Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE------ 307
K+V E +++G+ + P AGE+IQ A A++ +T + L + + T+ E
Sbjct: 394 KLVIE-EGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAA 452
Query: 308 -EFTRVTITKRSGEDPTPQSCC 328
F + D SCC
Sbjct: 453 QTFNK---------DVKQLSCC 465
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase,
homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Length = 468
Score = 75.6 bits (187), Expect = 2e-15
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 16 TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPEL 74
T + +L+++GRR T + V E + + +T+IP+V+A+GDV+ + P L
Sbjct: 264 TCEALLVSVGRRPFTGGLGLDKINVAK-NERGFVKIGDHFETSIPDVYAIGDVVDKGPML 322
Query: 75 TPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
A G A L G ++Y + ++T E VG SE++ ++
Sbjct: 323 AHKAEDEGVACAEILAG-KPGHVNYGVIPAVIYTMPEVASVGKSEDELKK 371
Score = 47.5 bits (114), Expect = 3e-06
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 264 KVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 309
++LG+H + AGE+I A++ G + E + T HPT++E
Sbjct: 409 RILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAHPTMSEAL 454
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A
{Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 458
Score = 74.9 bits (185), Expect = 4e-15
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLH 69
D VL+A+GRR T+ + +K+ ID + QT++ NV+A+GDV
Sbjct: 250 GGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAID-ERCQTSMHNVWAIGDVAG 308
Query: 70 EKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
E P L A+ G+++A + G + + +A FT E VG + E+A +
Sbjct: 309 E-PMLAHRAMAQGEMVAEIIAG-KARRFEPAAIAAVCFTDPEVVVVGKTPEQASQ 361
Score = 48.7 bits (117), Expect = 1e-06
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
+VV +LG +G E+ +A +++ G E + T+ HPTL E
Sbjct: 390 RVVAR-RDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGE 442
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus
stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 455
Score = 74.9 bits (185), Expect = 4e-15
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Query: 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVL 68
+ D VL+ +GRR T+E + G+K+ I+ D + +T++PN+FA+GD++
Sbjct: 252 GETKTIDADYVLVTVGRRPNTDELGLEQIGIKM-TNRGLIEVDQQCRTSVPNIFAIGDIV 310
Query: 69 HEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
P L A GK+ A + G + +DY + VF+ E VG E++A++
Sbjct: 311 PG-PALAHKASYEGKVAAEAIAG-HPSAVDYVAIPAVVFSDPECASVGYFEQQAKD 364
Score = 48.7 bits (117), Expect = 1e-06
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 264 KVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 309
++G IGPNA ++I A++ G+T E + T+ HPTL E
Sbjct: 402 VIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIA 447
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase,
2-oxoglutarate dehydrogenase comple pyruvate
dehydrogenase complex; HET: FAD; 1.70A {Thermus
thermophilus} PDB: 2eq7_A*
Length = 455
Score = 73.7 bits (182), Expect = 1e-14
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 16 TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPEL 74
D VL+A+GRR TE ++ NAG+ E +I D +T +P+++A+GDV+ P L
Sbjct: 252 EADRVLVAVGRRPYTEGLSLENAGLST-DERGRIPVDEHLRTRVPHIYAIGDVVR-GPML 309
Query: 75 TPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
A + G + G +DYQ + + V+T E VG +EE+ +
Sbjct: 310 AHKASEEGIAAVEHMVR-GFGHVDYQAIPSVVYTHPEIAAVGYTEEELKA 358
Score = 52.1 bits (126), Expect = 1e-07
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
KV+ A ++LG+H IG G+V+ A A+ + E L HP+L+E
Sbjct: 387 KVLAH-AKTDRILGVHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLSE 439
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex
protein, pyruvate dehydrogenase complex, glycine
decarboxylase complex; HET: FAD; 3.15A {Pisum sativum}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 73.3 bits (181), Expect = 1e-14
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 4 ATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVF 62
++ + D VL++ GR T + GV+ + +I + TN+ V+
Sbjct: 255 VEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVET-DKLGRILVNERFSTNVSGVY 313
Query: 63 AVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKA 122
A+GDV+ P L A + G L G +DY V V+T E VG +EE+
Sbjct: 314 AIGDVIP-GPMLAHKAEEDGVACVEYLAG-KVGHVDYDKVPGVVYTNPEVASVGKTEEQV 371
Query: 123 EE 124
+E
Sbjct: 372 KE 373
Score = 51.7 bits (125), Expect = 2e-07
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
K++ E K+LG+H + PNAGE+I A A++ + E + HPT++E
Sbjct: 402 KIIAE-KETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSE 454
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 73.0 bits (180), Expect = 1e-14
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDVL 68
+ +++ VL A GR+A ++ + N +++ +N+ D QT++ ++F GD
Sbjct: 256 GQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDAN 315
Query: 69 HEKPELTPVAVQAGKLLAARLYG-NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYG 127
+ L A GK+ Q + + VFT + VGLS + E+LY
Sbjct: 316 N-TLTLLHEAADDGKVAGTNAGAYPVIAQGQRRAPLSVVFTEPQVASVGLSLRQIEDLYA 374
Score = 56.1 bits (136), Expect = 6e-09
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 253 LKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
L V + + LG GP A + A A + +T + + + HP + E
Sbjct: 404 LNVYAD-RTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLTMPFYHPVIEE 457
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 72.6 bits (179), Expect = 2e-14
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 14 EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKP 72
YD VL+A GR + + AGV V + I+ D + +TN+P+++A+GD++ + P
Sbjct: 272 PQRYDAVLVAAGRAPNGKLISAEKAGVAV-TDRGFIEVDKQMRTNVPHIYAIGDIVGQ-P 329
Query: 73 ELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
L AV G + A G D + + +T E VG +E A+
Sbjct: 330 MLAHKAVHEGHVAAENCAG-HKAYFDARVIPGVAYTSPEVAWVGETELSAKA 380
Score = 47.5 bits (114), Expect = 3e-06
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 264 KVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 309
+++G +GPN G++I A++ G + T+ HPTL E
Sbjct: 418 RIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESI 463
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 72.2 bits (178), Expect = 3e-14
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 16 TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPEL 74
+ VL AIG E + AGV + + I D+ +TN+ +++A+GDV +L
Sbjct: 259 KAEKVLQAIGFAPNVEGYGLDKAGVAL-TDRKAIGVDDYMRTNVGHIYAIGDVNG-LLQL 316
Query: 75 TPVAVQAGKLLAARLYG-NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
VA G + A + G T D++ + F GL+E++A
Sbjct: 317 AHVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQARN 367
Score = 56.4 bits (137), Expect = 4e-09
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 264 KVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
++LG H +G + E++ A + LT L V HPT++E
Sbjct: 405 ELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSE 448
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 72.2 bits (178), Expect = 3e-14
Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 14 EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKP 72
+D +++A+GRR +T + +++GV + E I D+ T++P V+A+GDV+
Sbjct: 266 SQAFDKLIVAVGRRPVTTDLLAADSGVTL-DERGFIYVDDYCATSVPGVYAIGDVVRG-A 323
Query: 73 ELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
L A + G ++A R+ G QM+Y + ++T E VG +E+ +
Sbjct: 324 MLAHKASEEGVVVAERIAG-HKAQMNYDLIPAVIYTHPEIAGVGKTEQALKA 374
Score = 47.5 bits (114), Expect = 3e-06
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 264 KVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
+VLG+H IGP+A E++Q A A++ G + E L V HP L+E
Sbjct: 412 RVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSE 455
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 71.4 bits (176), Expect = 5e-14
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVL 68
+K + +L+A+GRR G++V + ++ D++ + P++ VGDV
Sbjct: 269 NKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEV-DKRGRLVIDDQFNSKFPHIKVVGDVT 327
Query: 69 HEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
P L A + G L G ++Y N+ + +++ E VG +EE+ +E
Sbjct: 328 FG-PMLAHKAEEEGIAAVEMLKT-GHGHVNYNNIPSVMYSHPEVAWVGKTEEQLKE 381
Score = 47.9 bits (115), Expect = 2e-06
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 264 KVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
++LG H IGPNAGE+I A++ G + E + HPTL+E
Sbjct: 419 RILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSE 462
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus}
PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 71.4 bits (176), Expect = 5e-14
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 4 ATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVF 62
A + E D VL+A+GR+ TE + AGVKV E I + +T++P V+
Sbjct: 247 LEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKV-DERGFIRVNARMETSVPGVY 305
Query: 63 AVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKA 122
A+GD P L A++ G + A G + DY V + V+T E+ VGL+EE+A
Sbjct: 306 AIGDAARP-PLLAHKAMREGLIAAENAAG-KDSAFDY-QVPSVVYTSPEWAGVGLTEEEA 362
Query: 123 EE 124
+
Sbjct: 363 KR 364
Score = 51.0 bits (123), Expect = 3e-07
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 264 KVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
+LG+ +GP AGE+I A A++ G T L TV HPTL+E
Sbjct: 402 LLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLSE 445
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 71.4 bits (176), Expect = 6e-14
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 16 TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPEL 74
+ VL+A GR+ T+ ++ AGV + +++ D QT+I V+A+GDV+ P L
Sbjct: 288 DAEVVLIATGRKPSTDGLGLAKAGVVL-DSRGRVEIDRHFQTSIAGVYAIGDVVR-GPML 345
Query: 75 TPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
A G +A + G ++Y + V+T E VG +EE+ +
Sbjct: 346 AHKAEDEGVAVAEIIAG-QAGHVNYDVIPGVVYTQPEVASVGKTEEELKA 394
Score = 49.5 bits (119), Expect = 7e-07
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 309
K++ + +VLG H IG AGE+I A ++ G + E L T HPT++E
Sbjct: 423 KILAD-KETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTCHAHPTMSEAV 477
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 70.6 bits (174), Expect = 9e-14
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 5 TGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFA 63
AS K T D +L+ IGRR T+ + G+++ +I + QT IPN++A
Sbjct: 259 EAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIEL-DPRGRIPVNTRFQTKIPNIYA 317
Query: 64 VGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAE 123
+GDV+ P L A G + + G G +DY V + ++T E VG SEE+ +
Sbjct: 318 IGDVVAG-PMLAHKAEDEGIICVEGMAG-GAVHIDYNCVPSVIYTHPEVAWVGKSEEQLK 375
Query: 124 E 124
E
Sbjct: 376 E 376
Score = 47.9 bits (115), Expect = 3e-06
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 309
K++ + + +VLG H +GP AGE++ A A++ G + E + HPTL+E F
Sbjct: 405 KILGQ-KSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAF 459
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.50A {Sulfolobus solfataricus}
Length = 466
Score = 69.1 bits (170), Expect = 3e-13
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 16 TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELT 75
++V++A GRR + E A G+ + +D + +TNIPNVFA GD
Sbjct: 260 FTNSVVLAAGRRPVIPEGA-REIGLSISKTGIVVD-ETMKTNIPNVFATGDANG-LAPYY 316
Query: 76 PVAVQAGKLLAARLYGNGTTQMDYQNVAT---TVFTPLEYGCVGLSEEKAEE 124
AV+ A + +DY +V + T++T VG+ KA +
Sbjct: 317 HAAVRMSIAAANNIMA-NGMPVDYVDVKSIPVTIYTIPSLSYVGILPSKARK 367
Score = 49.9 bits (120), Expect = 6e-07
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 264 KVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
+++G IG ++ +I AV GL + L S HP+ E
Sbjct: 405 RLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNE 448
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 59.4 bits (145), Expect = 5e-10
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGD---VLH---E 70
D+ + A+ + A + ++ + +D QT++PNVFA+GD V++
Sbjct: 234 DSGIFALNLHP---QLAYLDKKIQRNLDQTIAVD-AYLQTSVPNVFAIGDCISVMNEPVA 289
Query: 71 KPELTP---VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYG 127
+ P AV+ G ++A L + T GL+E +
Sbjct: 290 ETFYAPLVNNAVRTGLVVANNLEEKTHRFIGSLRTMGTKVGDYYLASTGLTETEGLFF-P 348
Query: 128 ADNLEIY---HAYYKPT 141
I A
Sbjct: 349 QTLASIIVRQPAPPLQH 365
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 58.7 bits (143), Expect = 7e-10
Identities = 37/155 (23%), Positives = 58/155 (37%), Gaps = 19/155 (12%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGD---VLH---E 70
D V++A+G R T + N + + A ++ ++T+IP V+A+GD +
Sbjct: 281 DMVILAVGFRP---NTTLGNGKIDLFRNGAFLVN-KRQETSIPGVYAIGDCATIYDNATR 336
Query: 71 KPELTP---VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYG 127
AV+ G + A G + Q L GL+ EKA+ L G
Sbjct: 337 DTNYIALASNAVRTGIVAAHNACGTDLEGIGVQGSNGISIYGLHMVSTGLTLEKAKRL-G 395
Query: 128 ADNLEIY-HAYYKPTEFFIPQRNPQRCYLKFIYHA 161
D KP FI N +K +Y
Sbjct: 396 FDAAVTEYTDNQKPE--FIEHGN-FPVTIKIVYDK 427
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 57.9 bits (141), Expect = 1e-09
Identities = 28/179 (15%), Positives = 56/179 (31%), Gaps = 43/179 (24%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGD---VLH---E 70
D ++ IG R T + V ++ A D + ++ ++FA GD V +
Sbjct: 237 DIAILCIGFRP---NTELLKGKVAMLDNGAIITD-EYMHSSNRDIFAAGDSAAVHYNPTN 292
Query: 71 KPELTP---VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYG 127
P AV+ G+L+ L + M Q+ + Y G++ A+
Sbjct: 293 SNAYIPLATNAVRQGRLVGLNLTEDKVKDMGTQSSSGLKLYGRTYVSTGINTALAKAN-- 350
Query: 128 ADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHA 186
NL++ Y + + + + ++Y
Sbjct: 351 --NLKVSEVIIADN-----------------YRPEFMLSTDEV--------LMSLVYDP 382
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 57.9 bits (141), Expect = 1e-09
Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 20/155 (12%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGD---VLH---E 70
D V++A+G R TA +++ P K D + +T+ P+VFAVGD + + +
Sbjct: 236 DLVVVAVGVRP---NTAWLKGTLELHPNGLIKTD-EYMRTSEPDVFAVGDATLIKYNPAD 291
Query: 71 KPELTP---VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYG 127
A + G+ L Q + ++ G++E A++L G
Sbjct: 292 TEVNIALATNARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKL-G 350
Query: 128 ADNLEIY-HAYYKPTEFFIPQRNPQRCYLKFIYHA 161
+ + Y F P + Q+ + K +Y
Sbjct: 351 KETKAVTVVEDYLMD--FNP--DKQKAWFKLVYDP 381
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 56.8 bits (138), Expect = 3e-09
Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 19/139 (13%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDV------LHE 70
D V++A G T+ +AG+++ P A +D +T+ P++FA GD +
Sbjct: 248 DLVILAAGVSPNTQ--LARDAGLELDPRGAIIVD-TRMRTSDPDIFAGGDCVTIPNLVTG 304
Query: 71 KPELTP---VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYG 127
KP P +A + G+++ L T GL+ E A G
Sbjct: 305 KPGFFPLGSMANRQGRVIGTNLADGDATFPGAVGSWAVKLFEGSASGAGLTVEGALRE-G 363
Query: 128 ADNLEIY-----HAYYKPT 141
D + ++ A++ P
Sbjct: 364 YDAVNVHVEQFDRAHFYPE 382
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 56.3 bits (137), Expect = 5e-09
Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 19/139 (13%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDV------LHE 70
+ V++A G + E GV++ A + + QT++ NV+A GDV +
Sbjct: 234 ELVILATGIKPNIE--LAKQLGVRIGETGAIWTN-EKMQTSVENVYAAGDVAETRHVITG 290
Query: 71 KPELTP---VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYG 127
+ P + G + + + G A T F +E G GL+E +A + G
Sbjct: 291 RRVWVPLAPAGNKMGYVAGSNIAGKELHFPGVLGTAVTKFMDVEIGKTGLTEMEALKE-G 349
Query: 128 ADNLEIY-----HAYYKPT 141
D + +Y P
Sbjct: 350 YDVRTAFIKASTRPHYYPG 368
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 56.4 bits (137), Expect = 5e-09
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 19/139 (13%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDV------LHE 70
D ++MAIG R T+ +AG+ + K++ QT+ P ++AVGD +
Sbjct: 257 DLLIMAIGVRPETQ--LARDAGLAIGELGGIKVN-AMMQTSDPAIYAVGDAVEEQDFVTG 313
Query: 71 KPELTP---VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYG 127
+ L P A + G++ A ++G Q A L G G +E++ ++ G
Sbjct: 314 QACLVPLAGPANRQGRMAADNMFGREERYQGTQGTAICKVFDLAVGATGKNEKQLKQA-G 372
Query: 128 ADNLEIY-----HAYYKPT 141
++Y HA Y P
Sbjct: 373 IAFEKVYVHTASHASYYPG 391
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 56.1 bits (136), Expect = 6e-09
Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 26/159 (16%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDV------LHE 70
D +++AIG + + AG+ + K++ + QT+ P+++A+GD + E
Sbjct: 272 DMLILAIGVQPESS--LAKGAGLALGVRGTIKVN-EKFQTSDPHIYAIGDAIEVKDFVTE 328
Query: 71 KPELTP---VAVQAGKLLAARLYGNGTTQMDYQNVATT----VFTPLEYGCVGLSEEKAE 123
+ P A + G++LA ++G+ + Y+ T VF L GL+E+ +
Sbjct: 329 TETMIPLAWPANRQGRMLADIIHGHTDSL--YKGTLGTSVAKVFD-LTVATTGLNEKILK 385
Query: 124 ELYGADNLEIY-HAYYKPTEFFIPQRNPQRCYLKFIYHA 161
L ++ A + P N +K I++
Sbjct: 386 RL-NIPYEVVHVQANSHAG--YYP--NATPVLIKLIFNK 419
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 55.6 bits (135), Expect = 7e-09
Identities = 27/141 (19%), Positives = 63/141 (44%), Gaps = 24/141 (17%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDV------LHE 70
D ++ +G ++ + ++ +K+ + ++ D +TN+PN++A+GD+ +
Sbjct: 231 DMIIEGVGTHPNSK--FIESSNIKLDRKGFIPVN-DKFETNVPNIYAIGDIATSHYRHVD 287
Query: 71 KPELTP---VAVQAGKLLAARLYGNGTTQMDYQNVATT----VFTPLEYGCVGLSEEKAE 123
P P A +A ++A ++ GN T ++++ F + VG+ + +
Sbjct: 288 LPASVPLAWGAHRAASIVAEQIAGNDT--IEFKGFLGNNIVKFFD-YTFASVGVKPNELK 344
Query: 124 ELYGADNLEI---YHAYYKPT 141
+ +E+ HA Y P
Sbjct: 345 QF-DYKMVEVTQGAHANYYPG 364
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 55.2 bits (134), Expect = 1e-08
Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 19/139 (13%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDV------LHE 70
D VL+++G + T+ + ++ + A +++ QTN+ +V+A GD + E
Sbjct: 272 DLVLVSVGVKPNTD--FLEGTNIRTNHKGAIEVN-AYMQTNVQDVYAAGDCATHYHVIKE 328
Query: 71 KPELTP---VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYG 127
+ P A + G+L + F L GL+E++A+ L
Sbjct: 329 IHDHIPIGTTANKQGRLAGLNMLDKRRAFKGTLGTGIIKFMNLTLARTGLNEKEAKGL-H 387
Query: 128 ADNLEIY-----HAYYKPT 141
+ A Y P
Sbjct: 388 IPYKTVKVDSTNMAGYYPN 406
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 45.6 bits (108), Expect = 2e-05
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHEKPELTP 76
D V+ A G + + + +K + ++D + QT+ P VFA GD++ T
Sbjct: 432 DVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVG-MANTTV 490
Query: 77 VAVQAGKLLAAR 88
+V GK A+
Sbjct: 491 ESVNDGK-QASW 501
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 42.2 bits (100), Expect = 2e-04
Identities = 14/81 (17%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDV-LHEKPE--L 74
V+ A+G + + + + + + + +D+ +T+I +++A GDV L
Sbjct: 221 SCVITAVGVKPNLD--FIKDTEIAS--KRGILVNDHMETSIKDIYACGDVAEFYGKNPGL 276
Query: 75 TPVAVQAGKLLAARLYGNGTT 95
+A + G++ G +
Sbjct: 277 INIANKQGEVAGLNACGEDAS 297
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 41.4 bits (98), Expect = 2e-04
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Query: 18 DTVLMAIGRRALTE--ETA---VSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDV-LHEK 71
D V+ A+G R TE A V+ G+ V + +T+ N++A+GD +
Sbjct: 233 DLVVSAVGLRPRTELAFAAGLAVNR-GIVV--------DRSLRTSHANIYALGDCAEVDG 283
Query: 72 P--ELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTP 109
+ + LA L G +Q+ Y + TV TP
Sbjct: 284 LNLLYVMPLMACARALAQTLAG-NPSQVAYGPMPVTVKTP 322
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 40.6 bits (96), Expect = 5e-04
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPE-NAKIDSDNEQTNIPNVFAVGDV 67
D V+ A+G A +KV +D + TN+ VFA GD+
Sbjct: 368 DLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDI 418
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 40.2 bits (95), Expect = 5e-04
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 13/84 (15%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKV---IPENAKIDSDNEQTNIPNVFAVGD-VLHEKP- 72
+ AIG + +G+ I ID DN +T+ +V+A+GD +
Sbjct: 224 KVKICAIGIVPNVD--LARRSGIHTGRGI----LID-DNFRTSAKDVYAIGDCAEYSGII 276
Query: 73 -ELTPVAVQAGKLLAARLYGNGTT 95
A++ ++LA L G
Sbjct: 277 AGTAKAAMEQARVLADILKGEPRR 300
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.030
Identities = 43/354 (12%), Positives = 96/354 (27%), Gaps = 121/354 (34%)
Query: 22 MA-IGRRALTEETAVSNAGVKVIPEN-------AKIDSDNEQTNI---------PNVFAV 64
+ G+ + + + V+ + +S + PN +
Sbjct: 158 VLGSGKTWVALD-VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 65 GDVLHEKPELTPVAVQAGK--LLAARLYGNG------------------------TTQ-- 96
D +L ++QA LL ++ Y N TT+
Sbjct: 217 SD-HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 97 --MDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIP----QRNP 150
D+ + ATT L++ + L+ ++ + L L+ +P + +P NP
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDC-----RPQD--LPREVLTTNP 327
Query: 151 QRC----------------YLKFIYHAYYKPTEFFIPQRNP---QRCYLK-VIYHAYYKP 190
+R + E + P ++ + + ++ P
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-----P 382
Query: 191 TEFFIPQRNPQRCYLKIYHAYYKPTE----------FFIPQRNPQRCYLKIYHAY--YKP 238
IP L + ++ + + ++ P+ + I Y K
Sbjct: 383 PSAHIP---TIL--LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 239 T--------EFFIPQRNPQRCYLKVVCERAAPQKV-------LGMHFIGPNAGE 277
+ N + + + P + +G H E
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFD---SDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.055
Identities = 44/262 (16%), Positives = 65/262 (24%), Gaps = 96/262 (36%)
Query: 78 AVQAGKLLAARLY----GNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
AV G A+L G G T DY F EEL ++
Sbjct: 148 AVGEGN---AQLVAIFGGQGNTD-DY-------F---------------EEL-----RDL 176
Query: 134 YHAYYKPTEFFIPQ---------RNPQRCYLKFIYHAYYKPTEFF-IPQRNPQRCYLKVI 183
Y Y+ I R + ++ E+ P P + YL I
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDA--EKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 184 YHAYYKPTEFFIPQRNP-----QRC-YLKIYHAY-YKPTEFFIPQRNPQRCYLKIYHA-- 234
P P Q Y+ + P E + + A
Sbjct: 235 ------PISC------PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 235 ---------YYKPTE------FFIPQRNPQRCYLKVVCERAAPQKVL--GMHFIGPNAGE 277
++ FFI R C A P L + E
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVR----------CYEAYPNTSLPPSILEDSLENNE 332
Query: 278 VIQGYAAAVKCGLTFETLESTV 299
+ ++ LT E ++ V
Sbjct: 333 GVPSPMLSIS-NLTQEQVQDYV 353
Score = 31.2 bits (70), Expect = 0.63
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 253 LKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRV 312
L +V P L +HF G + + Y+A + FET+ + +E
Sbjct: 1662 LDIV--INNP-VNLTIHFGGEKGKRIRENYSA-----MIFETIVDGKLKTEKIFKEINEH 1713
Query: 313 TITKRSGEDP 322
+ T +
Sbjct: 1714 S-TSYTFRSE 1722
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 33.3 bits (77), Expect = 0.094
Identities = 20/87 (22%), Positives = 27/87 (31%), Gaps = 22/87 (25%)
Query: 18 DTVLMAIGRRALTE--ETA---VSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDV-LHEK 71
D+ L+ +G + A GV V D T VFAVGDV
Sbjct: 231 DSALICVGAEPADQLARQAGLACDR-GVIV-------DHCG-ATLAKGVFAVGDVASWPL 281
Query: 72 PELTPV-------AVQAGKLLAARLYG 91
A + +AA + G
Sbjct: 282 RAGGRRSLETYMNAQRQAAAVAAAILG 308
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 33.4 bits (77), Expect = 0.095
Identities = 5/26 (19%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 45 ENAKIDSDNE-QTNIPNVFAVGDVLH 69
+ D+ +T++ ++A GD+ +
Sbjct: 276 YENALVVDSHMKTSVDGLYAAGDIAY 301
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 32.9 bits (76), Expect = 0.11
Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 8/76 (10%)
Query: 12 VFEDT----YDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGD 66
F + + + G ++ N D+ +T+ N++ G+
Sbjct: 216 EFHSGLRIERAGGFIVPTFFRPNQF--IEQLGCELQ-SNGTFVIDDFGRTSEKNIYLAGE 272
Query: 67 VLHEKPELTPVAVQAG 82
+ P +A G
Sbjct: 273 TTTQGPSSLIIAASQG 288
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 33.3 bits (77), Expect = 0.11
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 24/89 (26%)
Query: 18 DTVLMAIGRRALTE--ETA---VSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDV-LHEK 71
D V++ IG +A N GV V D + +T++ +V+A+GD H
Sbjct: 241 DIVIVGIGIVPCVGALISAGASGGN-GVDV-------D-EFCRTSLTDVYAIGDCAAHAN 291
Query: 72 PELT---------PVAVQAGKLLAARLYG 91
A A + G
Sbjct: 292 DFADGAVIRLESVQNANDMATAAAKDICG 320
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 32.9 bits (76), Expect = 0.12
Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 10 DKVFEDT----YDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAV 64
D V D + R + V+ P + I +D QT +FA
Sbjct: 204 DVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFAC 263
Query: 65 GDV 67
GDV
Sbjct: 264 GDV 266
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 32.5 bits (75), Expect = 0.17
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 14/55 (25%)
Query: 18 DTVLMAIGRRALTE--ETA---VSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDV 67
D V++ IG A A + G+ V D+ +T P+V+A+GDV
Sbjct: 229 DMVVVGIGVLANDALARAAGLACDD-GIFV-------DAYG-RTTCPDVYALGDV 274
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 32.6 bits (75), Expect = 0.18
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 55 QTNIPNVFAVGDVLH 69
+TNI FA GD+
Sbjct: 274 ETNIEGFFAAGDICT 288
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 32.2 bits (74), Expect = 0.18
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 55 QTNIPNVFAVGDVLH 69
T+IP V+A GD++
Sbjct: 276 ATSIPGVYACGDIVT 290
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 32.4 bits (74), Expect = 0.19
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 26/90 (28%)
Query: 18 DTVLMAIGRRALTE-------ETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDV-L 68
D ++ A+G E E G +V + E Q N++ GD
Sbjct: 272 DHIVAAVGLEPNVELAKTGGLEIDSDFGGFRV---------NAELQAR-SNIWVAGDAAC 321
Query: 69 HEKPELTPV-------AVQAGKLLAARLYG 91
+L AV +G+L + G
Sbjct: 322 FYDIKLGRRRVEHHDHAVVSGRLAGENMTG 351
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 32.1 bits (74), Expect = 0.19
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDV 67
D V + +G T + ++GVK+ + ++T++P V+A GDV
Sbjct: 242 DGVFIYVGLIPQTS--FLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDV 289
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 32.1 bits (74), Expect = 0.20
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 18 DTVLMAIGRRALTE--ETA---VSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDV 67
D V++ +G E A + G+ V D T+ P++ A+GD
Sbjct: 231 DLVVVGVGVIPNVEIAAAAGLPTAA-GIIV-------DQQL-LTSDPHISAIGDC 276
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 32.2 bits (74), Expect = 0.20
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 18 DTVLMAIGRRALTE--ETA---VSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDV 67
D V+ IG E A V N G+ + + QT+ P + AVGD
Sbjct: 240 DLVIAGIGLIPNCELASAAGLQVDN-GIVI-------NEHM-QTSDPLIMAVGDC 285
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding,
FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 31.3 bits (72), Expect = 0.35
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDV 67
+ V + IG T+ + G++ + +T++P VFA GD
Sbjct: 241 NGVFIEIGFDPPTD--FAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDC 288
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 31.0 bits (71), Expect = 0.53
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 55 QTNIPNVFAVGDV 67
TNIP +FA GDV
Sbjct: 273 YTNIPMLFAAGDV 285
>3r9u_A Thioredoxin reductase; structural genomics, center for structural
genomics of infec diseases, csgid, thioredoxin-disulfide
reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Length = 315
Score = 30.9 bits (71), Expect = 0.56
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 55 QTNIPNVFAVGDV 67
QT++ +FA GD+
Sbjct: 273 QTSVAGLFAAGDL 285
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP,
oxidoreductase, phosphoprotein, redox-A center; HET: FAD
CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Length = 338
Score = 30.6 bits (70), Expect = 0.62
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 48 KIDSDNEQTNIPNVFAVGDV 67
K + T++P FA GDV
Sbjct: 289 KTVPGSSLTSVPGFFAAGDV 308
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Length = 301
Score = 30.7 bits (70), Expect = 0.62
Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 256 VCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFT 310
V RA V G N +Q A+ T STVG HPT EF
Sbjct: 32 VIGRAVEIGVKKFMITGGN----LQDSKDALHLAQTNGMFFSTVGCHPTRCGEFE 82
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 30.7 bits (70), Expect = 0.67
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 48 KIDSDNEQTNIPNVFAVGDV 67
ID+ E T++ VFA GD
Sbjct: 471 IIDAKCE-TSVKGVFAAGDC 489
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+
B reduced izoalloxazine bending, oxidoreductase; HET:
FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A*
3ish_A*
Length = 311
Score = 30.5 bits (70), Expect = 0.69
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 55 QTNIPNVFAVGDV 67
+TN+ +FA GD+
Sbjct: 270 KTNVQGLFAAGDI 282
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein,
redox-active center, oxidoreductase, D oxidoreductase;
HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5
c.3.1.5 PDB: 2whd_A*
Length = 333
Score = 30.6 bits (70), Expect = 0.71
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 48 KIDSDNEQTNIPNVFAVGDV 67
QT++P VFA GDV
Sbjct: 277 VTKPGTTQTSVPGVFAAGDV 296
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Length = 287
Score = 30.2 bits (69), Expect = 0.72
Identities = 13/61 (21%), Positives = 23/61 (37%)
Query: 256 VCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 315
+ ERA V M G + Q + + L +T G+HP A+ + +
Sbjct: 22 IVERALEAGVTQMLLTGTSLAVSEQALELCQQLDASGAHLFATAGVHPHDAKAWDTDSER 81
Query: 316 K 316
+
Sbjct: 82 Q 82
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 30.1 bits (69), Expect = 0.78
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 55 QTNIPNVFAVGDV 67
+TN+ VFA GD
Sbjct: 266 ETNVKGVFAAGDC 278
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct
structural genomics, PSI, protein structure initiative;
HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Length = 335
Score = 30.2 bits (69), Expect = 0.84
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 48 KIDSDNEQTNIPNVFAVGDV 67
+ T++P VFA GD+
Sbjct: 270 LVQGRTTSTSLPGVFAAGDL 289
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A*
1f6m_A* 1tdf_A* 1tde_A*
Length = 320
Score = 30.2 bits (69), Expect = 0.90
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 55 QTNIPNVFAVGDV 67
QT+IP VFA GDV
Sbjct: 275 QTSIPGVFAAGDV 287
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural
genomics center for infect disease, dysentery, liver
abcess; 1.95A {Entamoeba histolytica hm-1}
Length = 325
Score = 30.0 bits (68), Expect = 0.91
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 253 LKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVK-CGLTFETLESTVGIHPTLAEEFT 310
+ VV +RA + + + + K LT L +T+G+HPT E
Sbjct: 54 IDVVLQRAERNGLSHIIITSGCLNDFKKAIEIINKYQNLTNIKLVTTIGVHPTRTNELK 112
>1ag7_A Conotoxin GS; neurotoxin, MU-conotoxin, sodium channel blocker,
cystine knot motif; HET: HYP CGU; NMR {Conus geographus}
SCOP: g.3.6.1
Length = 34
Score = 26.5 bits (58), Expect = 1.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 246 RNPQRCYLKVVCERAAPQKVLGMH 269
R P +C + + C R PQK +G H
Sbjct: 8 RCPPQCCMGLRCGRGNPQKCIGAH 31
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 29.0 bits (65), Expect = 2.4
Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDV 67
+ ++ +L + ++ K+ + +E T PN+F +G
Sbjct: 255 GQSVHTPHEPILATGFDATKNP---IVQQLFVTTNQDIKLTTHDESTRYPNIFMIGAT 309
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION,
structural genomics, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.1.9.12
Length = 264
Score = 28.6 bits (65), Expect = 2.5
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 256 VCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 315
V A V G+ G N ++ A K + + ST G+HP + ++ T
Sbjct: 24 VVACAFDAGVNGLLITGTN----LRESQQAQKLARQYSSCWSTAGVHPHDSSQWQAATEE 79
Query: 316 K 316
Sbjct: 80 A 80
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 28.9 bits (65), Expect = 2.8
Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 15/89 (16%)
Query: 11 KVFEDT--------YDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIP--- 59
++ED + + V++AG KV K+ N P
Sbjct: 231 VIYEDLNGNTHEVPAKFTMFMPSFQG---PEVVASAGDKVANPANKMVIVNRCFQNPTYK 287
Query: 60 NVFAVGDVLH-EKPELTPVAVQAGKLLAA 87
N+F VG V E TP+ K
Sbjct: 288 NIFGVGVVTAIPPIEKTPIPTGVPKTGMM 316
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis}
SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 28.6 bits (64), Expect = 2.9
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKI-DSDNEQTNIPNVFAVGDV 67
V+ ++G R V G+ ++ I + PN + VG +
Sbjct: 316 QLVVRSVGYRG------VPTPGLPFDDQSGTIPNVGGRINGSPNEYVVGWI 360
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Length = 401
Score = 28.5 bits (63), Expect = 3.3
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Query: 253 LKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVK-CGLTFETLESTVGIHPTLAEEFTR 311
+ ERAA + V G + E L+ L T+G+HP EF
Sbjct: 40 YVKLLERAAQRHVKNALVTGSSIAESQSAIELVSSVKDLSPLKLYHTIGVHPCCVNEFAD 99
Query: 312 VTITKRSGEDPTPQSCCRP 330
+ ++ S
Sbjct: 100 ASQGDKASASIDNPSMDEA 118
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 28.2 bits (63), Expect = 3.9
Identities = 17/131 (12%), Positives = 25/131 (19%), Gaps = 31/131 (23%)
Query: 48 KIDSDNEQTNIPNVFAVGDV-------LHEKPELTP----VAVQAGKLLA----ARLYGN 92
+D N+FA G P P + A L G
Sbjct: 287 LVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADLEGR 346
Query: 93 GTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQR 152
Q A+ I KP + +
Sbjct: 347 KGEQ---------TMGTWNAVAF------ADMGDRG-AAFIALPQLKPRKVDVFAYGRWV 390
Query: 153 CYLKFIYHAYY 163
K + Y+
Sbjct: 391 HLAKVAFEKYF 401
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics,
PSI, protein structure initiative, NYSG oxidoreductase;
2.20A {Escherichia coli}
Length = 483
Score = 28.1 bits (63), Expect = 4.1
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 256 VCERAAPQKVLGMHFIGP----NAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 309
+ P++V G+HF P EV+ G A A + L + G P
Sbjct: 131 EIKN--PERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHST 186
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 28.0 bits (62), Expect = 4.5
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 5/38 (13%)
Query: 35 VSNAGVKVIPENAK-----IDSDNEQTNIPNVFAVGDV 67
S +PE+ K N T + ++ D
Sbjct: 424 ASGPDEAWVPEDYKVRAANGKVYNRMTTVEGLWTCADG 461
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis,
electron transferase, oxidoreductase; HET: FAD; 1.70A
{Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A*
1e1m_A* 1e1n_A* 1e6e_A*
Length = 460
Score = 27.9 bits (62), Expect = 5.5
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDV 67
VL +IG ++ + V P+ + + ++P ++ G V
Sbjct: 323 GLVLSSIGYKSRPID-----PSVPFDPKLGVVPNMEGRVVDVPGLYCSGWV 368
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex,
oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP:
a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A*
1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A*
3hdh_A*
Length = 302
Score = 27.5 bits (62), Expect = 5.9
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 262 PQKVLGMHFIGP----NAGEVIQGYAAAVKCGLTFETLES---TVGIHPTLAEEF 309
+ G+HF P EVI+ + K TFE+L +G HP ++
Sbjct: 151 QDRFAGLHFFNPVPVMKLVEVIKTPMTSQK---TFESLVDFSKALGKHPVSCKDT 202
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding
protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A
{Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A*
2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A*
1gcg_A 3ga5_A* 3gbp_A*
Length = 309
Score = 27.3 bits (61), Expect = 7.0
Identities = 14/64 (21%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVG 65
G ++ K ++D + M++ R+A+ E+ A + V+++ +++ D + I + A G
Sbjct: 6 GVTIYK-YDDNF----MSVVRKAI-EQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKG 59
Query: 66 -DVL 68
L
Sbjct: 60 VKAL 63
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 27.3 bits (61), Expect = 7.5
Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 21/71 (29%)
Query: 17 YDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTP 76
+D++++ GR + + E +S+ + +I ++ +GD
Sbjct: 635 FDSLVLVTGRHSECT----------LWNELKARESEWAENDIKGIYLIGD---------- 674
Query: 77 VAVQAGKLLAA 87
A + A
Sbjct: 675 -AEAPRLIADA 684
>2bhg_A Foot-and-mouth disease virus 3C protease; chymotrypsin-like
cysteine protease, capsid protein, core protein; 1.9A
{Foot-and-mouth disease virus} SCOP: b.47.1.4 PDB:
2j92_A 2wv4_A 2wv5_A
Length = 209
Score = 26.9 bits (59), Expect = 8.6
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 255 VVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVK 287
V+ + A ++G H AG GY + V
Sbjct: 168 VLAKDGADTFIVGTHS----AGGNGVGYCSCVS 196
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: PE8; 2.00A {Archaeoglobus
fulgidus}
Length = 293
Score = 26.8 bits (60), Expect = 9.2
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 262 PQKVLGMHFIGP----NAGEVIQGYA 283
P + LG+H++ P E++
Sbjct: 122 PSRFLGVHWMNPPHVMPLVEIVISRF 147
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.424
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,220,413
Number of extensions: 315554
Number of successful extensions: 719
Number of sequences better than 10.0: 1
Number of HSP's gapped: 624
Number of HSP's successfully gapped: 141
Length of query: 332
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 238
Effective length of database: 4,077,219
Effective search space: 970378122
Effective search space used: 970378122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)