RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3825
(332 letters)
>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 133
Score = 89.1 bits (220), Expect = 2e-22
Identities = 50/102 (49%), Positives = 73/102 (71%)
Query: 227 CYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAV 286
+++YH+++ P E+ +P R+ +CY KV+C ++V+G H +GPNAGEV QG+AAA+
Sbjct: 31 ENIEVYHSFFWPLEWTVPSRDNNKCYAKVICNLKDNERVVGFHVLGPNAGEVTQGFAAAL 90
Query: 287 KCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCC 328
KCGLT + L+ST+GIHP AE FT +++TKRSG D CC
Sbjct: 91 KCGLTKQQLDSTIGIHPVCAEIFTTLSVTKRSGGDILQSGCC 132
Score = 47.1 bits (111), Expect = 2e-07
Identities = 35/65 (53%), Positives = 47/65 (72%)
Query: 99 YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
Y NV TTVFTPLEYGC GLSEEKA E +G +N+E+YH+++ P E+ +P R+ +CY K I
Sbjct: 1 YDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVI 60
Query: 159 YHAYY 163
+
Sbjct: 61 CNLKD 65
>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 124
Score = 67.6 bits (165), Expect = 9e-15
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 221 QRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQ 280
+ + + + + + N ++KV+ + +VLG+H IGP+A E++Q
Sbjct: 23 ALKAEGVAINVGVFPFAASGRAMAA-NDTAGFVKVIADAKT-DRVLGVHVIGPSAAELVQ 80
Query: 281 GYAAAVKCGLTFETLESTVGIHPTLAEEF 309
A A++ G + E L V HP L+E
Sbjct: 81 QGAIAMEFGTSAEDLGMMVFAHPALSEAL 109
Score = 36.0 bits (83), Expect = 0.001
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 99 YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
Y + ++T E VG +E+ + A N + + + + N ++K I
Sbjct: 1 YDLIPAVIYTHPEIAGVGKTEQALKAEGVAIN--VGVFPFAASGRAMAA-NDTAGFVKVI 57
Query: 159 YHA 161
A
Sbjct: 58 ADA 60
>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin
reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 235
Score = 66.7 bits (161), Expect = 2e-13
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 49 IDSDNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMD 98
+D EQTN+P ++A+GD+L K ELTPVA+QAG+LLA RLYG T + D
Sbjct: 186 PVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVKCD 235
>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 123
Score = 63.5 bits (154), Expect = 3e-13
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 221 QRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQ 280
Q KI + ++ ++K++ + +++LG H IGPNAGE+I
Sbjct: 23 QLKEAGIDYKIGKFPFAANSRAKTNQDT-EGFVKILIDSKT-ERILGAHIIGPNAGEMIA 80
Query: 281 GYAAAVKCGLTFETLESTVGIHPTLAEEF 309
A++ G + E + HPTL+E F
Sbjct: 81 EAGLALEYGASAEDVARVCHAHPTLSEAF 109
Score = 40.8 bits (95), Expect = 3e-05
Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 99 YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
Y N+ + +++ E VG +EE+ +E + + ++K +
Sbjct: 1 YNNIPSVMYSHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKT---NQDTEGFVKIL 57
Query: 159 YHA 161
+
Sbjct: 58 IDS 60
>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia
fasciculata [TaxId: 5656]}
Length = 128
Score = 62.4 bits (151), Expect = 9e-13
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 224 PQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYA 283
+ + +Y + + P I ++ +++V A +VLG+H +G ++ E+IQ A
Sbjct: 26 KKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVT-NHADGEVLGVHMLGDSSPEIIQSVA 84
Query: 284 AAVKCGLTFETLESTVGIHPTLAEEFT 310
+K G +T+G+HPT AEE
Sbjct: 85 ICLKMGAKISDFYNTIGVHPTSAEELC 111
Score = 41.6 bits (97), Expect = 1e-05
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 99 YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
+ VA VF+ G G EE A + Y D + +Y + + P I ++ ++ +
Sbjct: 1 HTKVACAVFSIPPMGVCGYVEEDAAKKY--DQVAVYESSFTPLMHNISGSTYKKFMVRIV 58
Query: 159 YHAYYKPTEFF 169
+
Sbjct: 59 TNHADGEVLGV 69
>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 221
Score = 63.4 bits (153), Expect = 2e-12
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
R T++ +++ G++ + I + + TN+ ++AVGDV K LTPV
Sbjct: 141 GMPSTPHERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCG-KALLTPV 199
Query: 78 AVQAGKLLAARLYGNGT-TQMD 98
A+ AG+ LA RL+ +++D
Sbjct: 200 AIAAGRKLAHRLFEYKEDSKLD 221
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 223
Score = 63.3 bits (153), Expect = 2e-12
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
+ +GRR T+E + G+K+ +T++PN+FA+GD++ P L
Sbjct: 143 SRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVP-GPALAHK 201
Query: 78 AVQAGKLLAARLYGNGTTQMDY 99
A GK+ A + G+ + +DY
Sbjct: 202 ASYEGKVAAEAIAGHP-SAVDY 222
>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 115
Score = 58.2 bits (140), Expect = 2e-11
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLA 306
N +LK+V + ++G IGPNA ++I A++ G+T E + T+ HPTL
Sbjct: 46 NDTDGFLKLVVRKE-DGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLG 104
Query: 307 E 307
E
Sbjct: 105 E 105
Score = 34.3 bits (78), Expect = 0.004
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 3/68 (4%)
Query: 102 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHA 161
+ VF+ E VG E++A++ + + N +LK +
Sbjct: 2 IPAVVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALAL---NDTDGFLKLVVRK 58
Query: 162 YYKPTEFF 169
Sbjct: 59 EDGVIIGA 66
>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium
falciparum [TaxId: 5833]}
Length = 119
Score = 57.5 bits (138), Expect = 4e-11
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 256 VCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTR 311
+ + + G+H IG NA E++QG+A A+K T + + T+ IHPT AEEF
Sbjct: 62 LVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLT 117
Score = 41.0 bits (95), Expect = 3e-05
Identities = 18/72 (25%), Positives = 34/72 (47%)
Query: 99 YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
Y+ + T +F+ G +GLSEE A ++YG +N++IY + + F + P+ ++
Sbjct: 1 YKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYL 60
Query: 159 YHAYYKPTEFFI 170
E
Sbjct: 61 KLVCVGKDELIK 72
>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia
coli [TaxId: 562]}
Length = 115
Score = 57.5 bits (138), Expect = 4e-11
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 227 CYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAV 286
+ + + Q C +K+VC + +K++G+H IG E++QG+A A+
Sbjct: 30 DDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGS-EEKIVGIHGIGFGMDEMLQGFAVAL 88
Query: 287 KCGLTFETLESTVGIHPTLAEEFT 310
K G T + ++TV IHPT AEEF
Sbjct: 89 KMGATKKDFDNTVAIHPTAAEEFV 112
Score = 40.9 bits (95), Expect = 2e-05
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 99 YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
Y N+ T VF+ G VGL+E +A E YG D +++Y + + + + Q C +K +
Sbjct: 1 YSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAM-YTAVTTHRQPCRMKLV 59
Query: 159 YHAYYKPTEFF 169
+
Sbjct: 60 CVGSEEKIVGI 70
>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M
oxidoreductase/carboxylase {Xanthobacter sp., py2
[TaxId: 35809]}
Length = 140
Score = 57.8 bits (139), Expect = 4e-11
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGI--HPT 304
+ K+V + +KVLG H +G A + Q +K GLT + L + +PT
Sbjct: 64 AHMSGFQKIVIDAK-TRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPT 122
Query: 305 LAEEFTRVTITKR 317
+ +R+ +
Sbjct: 123 HFIQLSRLRAGSK 135
Score = 38.1 bits (88), Expect = 3e-04
Identities = 7/39 (17%), Positives = 12/39 (30%)
Query: 100 QNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYY 138
+N + T E +G+ EE+A
Sbjct: 2 KNYPDFLHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDT 40
>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase
{Crithidia fasciculata [TaxId: 5656]}
Length = 240
Score = 59.6 bits (143), Expect = 5e-11
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 37 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQ 96
AGV+V A +TN+ N++A+GDV ++ LTPVA+ G ++ N
Sbjct: 180 KAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVT-DRVMLTPVAINEGAAFVDTVFANKPRA 238
Query: 97 MD 98
D
Sbjct: 239 TD 240
>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase
{Neisseria meningitidis [TaxId: 487]}
Length = 128
Score = 56.9 bits (137), Expect = 6e-11
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Query: 225 QRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAA 284
+ + + K++ A +++G +GPN G++I
Sbjct: 26 ASARKITKANFPWAASGRAIANGCDKPFTKLIF-DAETGRIIGGGIVGPNGGDMIGEVCL 84
Query: 285 AVKCGLTFETLESTVGIHPTLAEEF 309
A++ G + T+ HPTL E
Sbjct: 85 AIEMGCDAADIGKTIHPHPTLGESI 109
Score = 32.3 bits (73), Expect = 0.030
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 3/60 (5%)
Query: 102 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHA 161
+ +T E VG +E A+ + + + K I+ A
Sbjct: 4 IPGVAYTSPEVAWVGETELSAKASARKITKANFPWAASGRAIAN---GCDKPFTKLIFDA 60
>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden
pea (Pisum sativum) [TaxId: 3888]}
Length = 123
Score = 56.1 bits (135), Expect = 1e-10
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLA 306
+ +K++ E+ K+LG+H + PNAGE+I A A++ + E + HPT++
Sbjct: 48 DNAEGLVKIIAEKET-DKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMS 106
Query: 307 EEF 309
E
Sbjct: 107 EAI 109
Score = 38.4 bits (89), Expect = 2e-04
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 99 YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
Y V V+T E VG +EE+ +E + + + +K I
Sbjct: 1 YDKVPGVVYTNPEVASVGKTEEQVKETGV--EYRVGKFPFMANSRAKAI-DNAEGLVKII 57
Query: 159 YHA 161
Sbjct: 58 AEK 60
>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase
{Pseudomonas putida [TaxId: 303]}
Length = 123
Score = 55.5 bits (133), Expect = 2e-10
Identities = 17/83 (20%), Positives = 29/83 (34%)
Query: 225 QRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAA 284
+ L A + + V R +LG +G E+ +A
Sbjct: 25 SQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQ 84
Query: 285 AVKCGLTFETLESTVGIHPTLAE 307
+++ G E + T+ HPTL E
Sbjct: 85 SLEMGACLEDVAGTIHAHPTLGE 107
Score = 28.5 bits (63), Expect = 0.54
Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 102 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHA 161
+A FT E VG + E+A + D + + + +
Sbjct: 4 IAAVCFTDPEVVVVGKTPEQASQQGL-DCIVAQFPFAANGRAMSLESKSGFVRVVARRDN 62
Query: 162 YY 163
+
Sbjct: 63 HL 64
>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 118
Score = 54.7 bits (131), Expect = 4e-10
Identities = 16/85 (18%), Positives = 31/85 (36%)
Query: 225 QRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAA 284
+ + + R + R + V+G + P A E+I A
Sbjct: 25 DAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAV 84
Query: 285 AVKCGLTFETLESTVGIHPTLAEEF 309
AV+ +T L T+ ++P+L+
Sbjct: 85 AVQNRITVNELAQTLAVYPSLSGSI 109
Score = 33.2 bits (75), Expect = 0.013
Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 3/69 (4%)
Query: 101 NVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYH 160
VA TVFT E VG+ + + A T + ++K
Sbjct: 3 TVAATVFTRPEIAAVGVPQSVIDAGSVAAR---TIMLPLRTNARAKMSEMRHGFVKIFCR 59
Query: 161 AYYKPTEFF 169
Sbjct: 60 RSTGVVIGG 68
>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 115
Score = 54.5 bits (130), Expect = 4e-10
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 227 CYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAV 286
+K Y + P + +R + V + +KV+G+H G E++QG+A AV
Sbjct: 31 ENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANK--EEKVVGIHMQGLGCDEMLQGFAVAV 88
Query: 287 KCGLTFETLESTVGIHPTLAEEFT 310
K G T ++TV IHPT +EE
Sbjct: 89 KMGATKADFDNTVAIHPTSSEELV 112
Score = 41.4 bits (96), Expect = 1e-05
Identities = 18/70 (25%), Positives = 31/70 (44%)
Query: 99 YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
Y N+ T VF+ G VGL+E++A YG +N++ Y + P + +R +
Sbjct: 1 YNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVC 60
Query: 159 YHAYYKPTEF 168
+ K
Sbjct: 61 ANKEEKVVGI 70
>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 56.0 bits (134), Expect = 9e-10
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 1/84 (1%)
Query: 8 SMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDV 67
+ + T V +GRR G++V + D + P++ VGDV
Sbjct: 145 DVKNIIVATGSEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDV 204
Query: 68 LHEKPELTPVAVQAGKLLAARLYG 91
P L A + G L
Sbjct: 205 T-FGPMLAHKAEEEGIAAVEMLKT 227
>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 221
Score = 55.6 bits (133), Expect = 1e-09
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 15/91 (16%)
Query: 1 MRIATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPN 60
+ IATG+ GR T + GV+ + ++ TN+
Sbjct: 140 IIIATGSD--------------VKGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSG 185
Query: 61 VFAVGDVLHEKPELTPVAVQAGKLLAARLYG 91
V+A+GDV+ P L A + G L G
Sbjct: 186 VYAIGDVI-PGPMLAHKAEEDGVACVEYLAG 215
>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide
dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Length = 229
Score = 53.4 bits (127), Expect = 7e-09
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
+ ++ A R + + AGV V +TN+P+++A+GD++ +P L
Sbjct: 151 NCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVG-QPMLAHK 209
Query: 78 AVQAGKLLAARLYGN 92
AV G + A G+
Sbjct: 210 AVHEGHVAAENCAGH 224
>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis
[TaxId: 1351]}
Length = 126
Score = 50.3 bits (120), Expect = 2e-08
Identities = 12/92 (13%), Positives = 29/92 (31%), Gaps = 3/92 (3%)
Query: 225 QRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPN-AGEVIQGYA 283
Q+ + + Q+ + K+V + ++LG + I +
Sbjct: 26 QKLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPET-TQILGAQLMSKADLTANINAIS 84
Query: 284 AAVKCGLTFETLESTV-GIHPTLAEEFTRVTI 314
A++ +T E L P + + +
Sbjct: 85 LAIQAKMTIEDLAYADFFFQPAFDKPWNIINT 116
Score = 33.7 bits (77), Expect = 0.008
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 103 ATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHA 161
VF ++ G++E A++L E + Q+ + K +Y
Sbjct: 7 GLAVFDY-KFASTGINEVMAQKLG----KETKAVTVVEDYLMDFNPDKQKAWFKLVYDP 60
>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase
{Escherichia coli [TaxId: 562]}
Length = 217
Score = 49.2 bits (116), Expect = 2e-07
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Query: 1 MRIATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPN 60
G ++ + R + + AGVK + + + TNI
Sbjct: 120 TLEVNGETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEG 179
Query: 61 VFAVGDVLHEKPELTPVAVQAGKLLAARLYGN 92
++AVGD ELTPVAV AG+ L+ RL+ N
Sbjct: 180 IYAVGDNTG-AVELTPVAVAAGRRLSERLFNN 210
>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 233
Score = 48.9 bits (115), Expect = 2e-07
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 41 KVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTT 95
++ N +T ++A GD L VA G++ G G +
Sbjct: 177 QLGRGNYLTVDRVSRTLATGIYAAGDCT-GLLPLASVAAMQGRIAMYHALGEGVS 230
>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase
{Trypanosoma cruzi [TaxId: 5693]}
Length = 238
Score = 48.5 bits (114), Expect = 3e-07
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLH 69
+ + + M GR T++ + NAGV + ++D + +TN+ N++A+GDV +
Sbjct: 153 EHILLASGSWPHMPNGRSPRTKDLQLQNAGVMIKNGGVQVD-EYSRTNVSNIYAIGDVTN 211
Query: 70 EKPELTPVAVQAGKLLAARLYGNGTTQ 96
+ LTPVA+ L ++G +
Sbjct: 212 -RVMLTPVAINEAAALVDTVFGTTPRK 237
>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 229
Score = 47.7 bits (112), Expect = 4e-07
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 9 MDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVL 68
+ + + I RR +T + +++GV + D T++P V+A+GDV+
Sbjct: 142 DTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVV 201
Query: 69 HEKPELTPVAVQAGKLLAARLYGNGTTQMD 98
L A + G ++A R+ G+ QM+
Sbjct: 202 -RGAMLAHKASEEGVVVAERIAGHK-AQMN 229
>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl
coenzyme M oxidoreductase/carboxylase {Xanthobacter sp.,
py2 [TaxId: 35809]}
Length = 261
Score = 48.0 bits (113), Expect = 5e-07
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 52 DNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDY 99
+ QT++PNV+AVGD++ P A ++G A + G ++ Y
Sbjct: 217 EYLQTSVPNVYAVGDLIG-GPMEMFKARKSGCYAARNVMGE---KISY 260
>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase
{Plasmodium falciparum [TaxId: 5833]}
Length = 259
Score = 41.2 bits (95), Expect = 9e-05
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 52 DNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLE 111
+N++T++ N++AVGD + + + L +LY +NV +F ++
Sbjct: 180 ENQRTSVNNIYAVGDCC-----MVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQ 234
Query: 112 YGCVGLSEE--KAEELYGA 128
V ++ A+ L+
Sbjct: 235 LTPVAINAGRLLADRLFLK 253
>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase
{Pseudomonas putida [TaxId: 303]}
Length = 220
Score = 40.8 bits (94), Expect = 9e-05
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 52 DNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNG 93
+ QT++ NV+A+GDV E P L A+ G+++A + G
Sbjct: 176 ERCQTSMHNVWAIGDVAGE-PMLAHRAMAQGEMVAEIIAGKA 216
>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase
{Pseudomonas putida [TaxId: 303]}
Length = 185
Score = 39.0 bits (89), Expect = 3e-04
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 9 MDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVL 68
+ YD +++A G R L +++A + I+ ++ QT+ P + AVGD
Sbjct: 94 LSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVDNGIVIN-EHMQTSDPLIMAVGDCA 152
Query: 69 ---------HEKPELTPVAVQAGKLLAARLYG 91
+ E P A++ + +AA L G
Sbjct: 153 RFHSQLYDRWVRIESVPNALEQARKIAAILCG 184
>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase
{Pyrococcus furiosus [TaxId: 2261]}
Length = 167
Score = 37.0 bits (84), Expect = 0.001
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 42 VIPENAKIDSDNEQTNIPNVFAVGDVLHEK---PELTPVAVQAGKLLAARLYG 91
+ + DN +T+ +V+A+GD A++ ++LA L G
Sbjct: 114 IHTGRGILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKG 166
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea
mays) [TaxId: 4577]}
Length = 347
Score = 35.7 bits (80), Expect = 0.007
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 48 KIDSDNEQTNIPNVFAVGDVLHEK-PELTPVAVQAGKLLAARLYG 91
+ + D + + V+ G+ E A +G A L
Sbjct: 296 RYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILIN 340
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase
{Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 373
Score = 35.6 bits (80), Expect = 0.007
Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 10/67 (14%)
Query: 13 FEDTYDTVLMAIGRRALTEETAVSNA---------GVKVIPENAKIDSDNE-QTNIPNVF 62
E+++D V+M + V ++ +D+ ++ + N+P +F
Sbjct: 281 EEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNYDSVLDAIDKMEKNLPGLF 340
Query: 63 AVGDVLH 69
G+
Sbjct: 341 YAGNHRG 347
>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 311
Score = 32.2 bits (72), Expect = 0.071
Identities = 7/61 (11%), Positives = 17/61 (27%), Gaps = 3/61 (4%)
Query: 10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLH 69
D F ++ I ++ E+ + + N++ G +
Sbjct: 223 DGPFGAFCAKRIVDID---QNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVA 279
Query: 70 E 70
E
Sbjct: 280 E 280
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
{Myxococcus xanthus [TaxId: 34]}
Length = 347
Score = 30.9 bits (68), Expect = 0.19
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 10/88 (11%)
Query: 10 DKVFEDTYDTVLMAIGRRA-------LTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNV 61
+ E + V++A A L + A AG+ + ++ + + +P +
Sbjct: 260 GRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNLGHLERVAAIDAALQRLPGL 319
Query: 62 FAVGDVLHEKPELTPVAVQAGKLLAARL 89
+G+ ++ LA L
Sbjct: 320 HLIGNAYK--GVGLNDCIRNAAQLADAL 345
>d1ag7a_ g.3.6.1 (A:) Conotoxin {Synthetic, based on Conus
geographus, GS}
Length = 34
Score = 26.5 bits (58), Expect = 0.48
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 246 RNPQRCYLKVVCERAAPQKVLGMH 269
R P +C + + C R PQK +G H
Sbjct: 8 RCPPQCCMGLRCGRGNPQKCIGAH 31
>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase
{Escherichia coli [TaxId: 562]}
Length = 190
Score = 27.9 bits (61), Expect = 1.4
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 29 LTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLA 86
+ + N +KV + I + QT+IP VFA GDV+ + G + A
Sbjct: 126 FEGQLELENGYIKV---QSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAA 180
>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase
{Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 192
Score = 27.2 bits (59), Expect = 2.1
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 48 KIDSDNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLA 86
QT++P VFA GDV +K A G + A
Sbjct: 144 VTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAA 182
>d1j2na_ a.165.1.1 (A:) Myosin phosphatase inhibitor 17kDa protein,
CPI-17 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 99
Score = 26.2 bits (58), Expect = 2.2
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 176 QRCYLKVIYHAYYKPTEFFI 195
+ ++ + + PTE F+
Sbjct: 68 RSRKIQGLLKSCTNPTENFV 87
Score = 24.6 bits (54), Expect = 7.5
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 151 QRCYLKFIYHAYYKPTEFFI 170
+ ++ + + PTE F+
Sbjct: 68 RSRKIQGLLKSCTNPTENFV 87
>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 339
Score = 27.3 bits (59), Expect = 2.4
Identities = 14/129 (10%), Positives = 28/129 (21%)
Query: 120 EKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCY 179
K E++G + +I N + +K Y + +
Sbjct: 23 GKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPDE 82
Query: 180 LKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPT 239
+ + + F IP I + Y + T
Sbjct: 83 VYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGST 142
Query: 240 EFFIPQRNP 248
+ P
Sbjct: 143 PPPQSETTP 151
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 27.3 bits (59), Expect = 3.2
Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 13/101 (12%)
Query: 88 RLYGNGTTQMDYQNVATTVFTPLEY-GCVGLSEEKAEELYGAD------------NLEIY 134
+G + D N + L + G +E+ A +Y AD N +
Sbjct: 40 DFFGETVFRADLCNADVALGDLLIHEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVT 99
Query: 135 HAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNP 175
A + + RN + + RNP
Sbjct: 100 SALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNP 140
>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase
{Yeast (Candida tropicalis) [TaxId: 5482]}
Length = 175
Score = 26.7 bits (57), Expect = 3.4
Identities = 17/148 (11%), Positives = 30/148 (20%), Gaps = 4/148 (2%)
Query: 138 YKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQ 197
+ E P +K + I P + + TE P
Sbjct: 21 TQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPA----KTTGFGTTEPAAPC 76
Query: 198 RNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVC 257
N + + E + + FI NP +
Sbjct: 77 GNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKP 136
Query: 258 ERAAPQKVLGMHFIGPNAGEVIQGYAAA 285
K + + G + A
Sbjct: 137 NGLTDAKSIETLYDGTKPLHELYQDGVA 164
>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
putrefaciens [TaxId: 24]}
Length = 322
Score = 26.9 bits (58), Expect = 3.9
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 22 MAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDV 67
+ + +A + G+ VI A++ S+ I ++A G+V
Sbjct: 243 LDVALQAGAATRDLEMGGL-VIDTKAEVKSEKTGKPITGLYAAGEV 287
>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase
(KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 226
Score = 26.4 bits (58), Expect = 4.0
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 274 NAGEVIQGYAAAVKCGLTFET 294
A +V G++ A+ TF T
Sbjct: 205 RATDVALGWSIALGSPFTFAT 225
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.424
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,287,874
Number of extensions: 61957
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 62
Length of query: 332
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 246
Effective length of database: 1,226,816
Effective search space: 301796736
Effective search space used: 301796736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)