BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3827
(581 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein
pdb|1EQZ|C Chain C, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|G Chain G, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|C Chain C, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|G Chain G, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|C Chain C, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|G Chain G, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2ARO|C Chain C, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|G Chain G, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2F8N|A Chain A, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
pdb|2F8N|E Chain E, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 136
Score = 278 bits (711), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 446 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 505
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 506 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 565
LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 566 MPKDIQLARRIRGERA 581
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>pdb|3AV1|A Chain A, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|E Chain E, The Human Nucleosome Structure Containing The Histone
Variant H3.2
Length = 139
Score = 278 bits (710), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 446 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 505
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 63
Query: 506 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 565
LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 64 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 123
Query: 566 MPKDIQLARRIRGERA 581
MPKDIQLARRIRGERA
Sbjct: 124 MPKDIQLARRIRGERA 139
>pdb|3LEL|A Chain A, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|E Chain E, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|K Chain K, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|O Chain O, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
Length = 136
Score = 276 bits (706), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 135/136 (99%), Positives = 135/136 (99%)
Query: 446 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 505
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 506 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 565
LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTI 120
Query: 566 MPKDIQLARRIRGERA 581
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>pdb|2CV5|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
pdb|1U35|A Chain A, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|E Chain E, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
Length = 136
Score = 276 bits (705), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 135/136 (99%), Positives = 135/136 (99%)
Query: 446 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 505
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 506 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 565
LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 566 MPKDIQLARRIRGERA 581
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>pdb|3AFA|A Chain A, The Human Nucleosome Structure
pdb|3AFA|E Chain E, The Human Nucleosome Structure
pdb|3AZI|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZJ|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZK|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZL|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZM|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZN|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 139
Score = 276 bits (705), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 135/136 (99%), Positives = 135/136 (99%)
Query: 446 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 505
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 63
Query: 506 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 565
LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 64 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 123
Query: 566 MPKDIQLARRIRGERA 581
MPKDIQLARRIRGERA
Sbjct: 124 MPKDIQLARRIRGERA 139
>pdb|2IO5|B Chain B, Crystal Structure Of The Cia- Histone H3-H4 Complex
pdb|2NQB|A Chain A, Drosophila Nucleosome Structure
pdb|2NQB|E Chain E, Drosophila Nucleosome Structure
pdb|2PYO|A Chain A, Drosophila Nucleosome Core
pdb|2PYO|E Chain E, Drosophila Nucleosome Core
pdb|3C9K|C Chain C, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|G Chain G, Model Of Histone Octamer Tubular Crystals
Length = 135
Score = 275 bits (704), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 506
ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 566
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 120
Query: 567 PKDIQLARRIRGERA 581
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|3AZH|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
Length = 139
Score = 274 bits (701), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 134/136 (98%), Positives = 135/136 (99%)
Query: 446 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 505
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 63
Query: 506 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 565
LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 64 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 123
Query: 566 MPKDIQLARRIRGERA 581
MP+DIQLARRIRGERA
Sbjct: 124 MPQDIQLARRIRGERA 139
>pdb|3AZG|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
Length = 139
Score = 274 bits (701), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 134/136 (98%), Positives = 135/136 (99%)
Query: 446 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 505
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 63
Query: 506 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 565
LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHA+RVTI
Sbjct: 64 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAQRVTI 123
Query: 566 MPKDIQLARRIRGERA 581
MPKDIQLARRIRGERA
Sbjct: 124 MPKDIQLARRIRGERA 139
>pdb|3AZF|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
Length = 139
Score = 274 bits (701), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 134/136 (98%), Positives = 135/136 (99%)
Query: 446 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 505
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 63
Query: 506 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 565
LLIRKLPFQRLVREIAQDF+TDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 64 LLIRKLPFQRLVREIAQDFQTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 123
Query: 566 MPKDIQLARRIRGERA 581
MPKDIQLARRIRGERA
Sbjct: 124 MPKDIQLARRIRGERA 139
>pdb|3AZE|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
Length = 139
Score = 274 bits (701), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 134/136 (98%), Positives = 135/136 (99%)
Query: 446 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 505
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 63
Query: 506 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 565
LLIR+LPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 64 LLIRQLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 123
Query: 566 MPKDIQLARRIRGERA 581
MPKDIQLARRIRGERA
Sbjct: 124 MPKDIQLARRIRGERA 139
>pdb|3AYW|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
Length = 139
Score = 274 bits (701), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 134/136 (98%), Positives = 135/136 (99%)
Query: 446 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 505
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQ+STE
Sbjct: 4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQQSTE 63
Query: 506 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 565
LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 64 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 123
Query: 566 MPKDIQLARRIRGERA 581
MPKDIQLARRIRGERA
Sbjct: 124 MPKDIQLARRIRGERA 139
>pdb|1KX3|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|E Chain E, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|E Chain E, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|A Chain A, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|E Chain E, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1S32|A Chain A, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|E Chain E, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1ZBB|A Chain A, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|E Chain E, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|AA Chain a, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|EE Chain e, Structure Of The 4_601_167 Tetranucleosome
pdb|2FJ7|A Chain A, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|E Chain E, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2NZD|A Chain A, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|E Chain E, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3B6F|A Chain A, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|E Chain E, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|A Chain A, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|E Chain E, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3C1B|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|E Chain E, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3KUY|A Chain A, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|E Chain E, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3LJA|A Chain A, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|E Chain E, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3MGP|A Chain A, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|E Chain E, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|A Chain A, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|E Chain E, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|A Chain A, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|E Chain E, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|A Chain A, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|E Chain E, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MVD|A Chain A, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|E Chain E, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3LZ0|A Chain A, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|E Chain E, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|A Chain A, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|E Chain E, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3O62|A Chain A, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|E Chain E, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3MNN|A Chain A, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|E Chain E, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3TU4|A Chain A, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|E Chain E, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|A Chain A, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|E Chain E, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|A Chain A, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|E Chain E, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|A Chain A, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|E Chain E, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|A Chain A, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|E Chain E, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|A Chain A, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|E Chain E, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3UT9|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
Length = 135
Score = 274 bits (700), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/135 (99%), Positives = 134/135 (99%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 506
ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 566
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIM
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 120
Query: 567 PKDIQLARRIRGERA 581
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|1F66|A Chain A, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|E Chain E, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 136
Score = 274 bits (700), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/136 (98%), Positives = 134/136 (98%)
Query: 446 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 505
MARTKQTARKSTGGKAPRKQLATKAARKSAPATG VKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGEVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 506 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 565
LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTI 120
Query: 566 MPKDIQLARRIRGERA 581
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>pdb|3KXB|A Chain A, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|E Chain E, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
Length = 135
Score = 272 bits (695), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 133/135 (98%), Positives = 134/135 (99%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 506
ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQ+STEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQESTEL 60
Query: 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 566
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIM
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 120
Query: 567 PKDIQLARRIRGERA 581
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|3AV2|A Chain A, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|E Chain E, The Human Nucleosome Structure Containing The Histone
Variant H3.3
Length = 139
Score = 271 bits (692), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 132/136 (97%), Positives = 135/136 (99%)
Query: 446 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 505
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 4 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 63
Query: 506 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 565
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 64 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 123
Query: 566 MPKDIQLARRIRGERA 581
MPKDIQLARRIRGERA
Sbjct: 124 MPKDIQLARRIRGERA 139
>pdb|1ZLA|A Chain A, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|E Chain E, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
Length = 135
Score = 271 bits (692), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 133/135 (98%), Positives = 133/135 (98%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 506
ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 566
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRV IM
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVHIM 120
Query: 567 PKDIQLARRIRGERA 581
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|4HGA|B Chain B, Structure Of The Variant Histone H3.3-H4 Heterodimer In
Complex With Its Chaperone Daxx
Length = 136
Score = 271 bits (692), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 132/136 (97%), Positives = 135/136 (99%)
Query: 446 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 505
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 506 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 565
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 566 MPKDIQLARRIRGERA 581
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>pdb|3A6N|A Chain A, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|E Chain E, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
Length = 139
Score = 270 bits (690), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 131/136 (96%), Positives = 133/136 (97%)
Query: 446 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 505
MARTKQTARKSTGGKAPRKQLATK ARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 4 MARTKQTARKSTGGKAPRKQLATKVARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 63
Query: 506 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 565
LLIRKLPFQRL+REIAQDFKTDLRFQSSAVMALQEA E+YLVGLFEDTNLC IHAKRVTI
Sbjct: 64 LLIRKLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVGLFEDTNLCVIHAKRVTI 123
Query: 566 MPKDIQLARRIRGERA 581
MPKDIQLARRIRGERA
Sbjct: 124 MPKDIQLARRIRGERA 139
>pdb|1P3B|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 269 bits (688), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 132/135 (97%), Positives = 132/135 (97%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 506
ARTKQTARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 566
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIM
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 120
Query: 567 PKDIQLARRIRGERA 581
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|1M18|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
Length = 135
Score = 269 bits (687), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 131/135 (97%), Positives = 132/135 (97%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 506
ARTKQTARKSTGGKAPRKQL TKAA+K APATGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLVTKAAKKCAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 566
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIM
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 120
Query: 567 PKDIQLARRIRGERA 581
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|3C1C|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|E Chain E, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 135
Score = 268 bits (684), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 132/135 (97%), Positives = 132/135 (97%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 506
ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 566
LIRKLPFQRLVREIAQDF TDLRFQSSAVMALQEASEAYLV LFEDTNL AIHAKRVTIM
Sbjct: 61 LIRKLPFQRLVREIAQDFXTDLRFQSSAVMALQEASEAYLVALFEDTNLAAIHAKRVTIM 120
Query: 567 PKDIQLARRIRGERA 581
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|1P3K|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 267 bits (682), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 131/135 (97%), Positives = 131/135 (97%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 506
ARTKQTARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 566
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRV IM
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVAIM 120
Query: 567 PKDIQLARRIRGERA 581
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|1P3M|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 267 bits (682), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 131/135 (97%), Positives = 131/135 (97%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 506
ARTKQTARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 566
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRV IM
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVIIM 120
Query: 567 PKDIQLARRIRGERA 581
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|1P3A|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 266 bits (681), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 131/135 (97%), Positives = 131/135 (97%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 506
ARTKQTARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 566
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAK VTIM
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKHVTIM 120
Query: 567 PKDIQLARRIRGERA 581
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|1P3L|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 266 bits (680), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 131/135 (97%), Positives = 131/135 (97%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 506
ARTKQTARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 566
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRV IM
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVHIM 120
Query: 567 PKDIQLARRIRGERA 581
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|1P34|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 266 bits (679), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 131/135 (97%), Positives = 131/135 (97%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 506
ARTKQTARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 566
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAK VTIM
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKAVTIM 120
Query: 567 PKDIQLARRIRGERA 581
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|4H9O|A Chain A, Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4
Length = 135
Score = 264 bits (674), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 127/135 (94%), Positives = 132/135 (97%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 506
ARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 566
LIRKLPFQRLVREIAQDFKTDLRFQS+A+MALQEA+EA+LV LFEDTNLC IHAKRVTI
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSAAIMALQEAAEAFLVALFEDTNLCTIHAKRVTIF 120
Query: 567 PKDIQLARRIRGERA 581
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|4H9N|A Chain A, Complex Structure 1 Of DaxxH3.3(SUB5)H4
pdb|4H9Q|A Chain A, Complex Structure 4 Of Daxx(E225a)H3.3(SUB5)H4
Length = 135
Score = 259 bits (662), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 126/135 (93%), Positives = 131/135 (97%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 506
ARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 566
LIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EA+LV LFEDTNLC IHAKRVTI
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAFLVALFEDTNLCTIHAKRVTIF 120
Query: 567 PKDIQLARRIRGERA 581
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|4H9S|A Chain A, Complex Structure 6 Of DaxxH3.3(SUB7)H4
pdb|4H9S|B Chain B, Complex Structure 6 Of DaxxH3.3(SUB7)H4
Length = 135
Score = 256 bits (655), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/135 (91%), Positives = 130/135 (96%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 506
ARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 566
LIRKLPFQRLVREI QDFKTDLR+QS+A+ ALQEA+EA+LV LFEDTNLC IHAKRVTI
Sbjct: 61 LIRKLPFQRLVREICQDFKTDLRWQSAAIGALQEAAEAFLVALFEDTNLCTIHAKRVTIF 120
Query: 567 PKDIQLARRIRGERA 581
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|1ID3|A Chain A, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|E Chain E, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 135
Score = 244 bits (624), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 119/135 (88%), Positives = 129/135 (95%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 506
ARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIRR+QKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTEL 60
Query: 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 566
LIRKLPFQRLVREIAQDFKTDLRFQSSA+ ALQE+ EAYLV LFEDTNL AIHAKRVTI
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQ 120
Query: 567 PKDIQLARRIRGERA 581
K+I+LARR+RGER+
Sbjct: 121 KKEIKLARRLRGERS 135
>pdb|4H9P|A Chain A, Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4
pdb|4H9R|A Chain A, Complex Structure 5 Of Daxx(E225a)H3.3(SUB5,G90A)H4
Length = 135
Score = 241 bits (614), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 126/135 (93%), Positives = 131/135 (97%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 506
ARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 566
LIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EA+LV LFEDTNLC IHAKRVTI
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAFLVALFEDTNLCTIHAKRVTIF 120
Query: 567 PKDIQLARRIRGERA 581
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|1AOI|A Chain A, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|E Chain E, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 116
Score = 237 bits (605), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 115/116 (99%), Positives = 115/116 (99%)
Query: 466 LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 525
LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK
Sbjct: 1 LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 60
Query: 526 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 581
TDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 61 TDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 116
>pdb|3KWQ|A Chain A, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|E Chain E, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
Length = 98
Score = 201 bits (512), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 96/98 (97%), Positives = 97/98 (98%)
Query: 484 PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASE 543
PHRYRPGTVALREIRRYQ+STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASE
Sbjct: 1 PHRYRPGTVALREIRRYQESTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASE 60
Query: 544 AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 581
AYLV LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 61 AYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 98
>pdb|1HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 93
Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/93 (98%), Positives = 93/93 (100%)
Query: 489 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 548
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG
Sbjct: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 60
Query: 549 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 581
LFEDTNLCAIHAKRVTIMPKDI+LARRIRGERA
Sbjct: 61 LFEDTNLCAIHAKRVTIMPKDIELARRIRGERA 93
>pdb|2PYO|D Chain D, Drosophila Nucleosome Core
pdb|2PYO|H Chain H, Drosophila Nucleosome Core
Length = 122
Score = 189 bits (479), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 93/107 (86%), Positives = 95/107 (88%)
Query: 224 QKNIAXXXXXXXXXXXESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESS 283
QKNI ESYAIYIYKVLKQVHPDTG+SSKAMSIMNSFVNDIFERIAAE+S
Sbjct: 16 QKNITKTDKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEAS 75
Query: 284 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 330
RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 76 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 122
>pdb|2NQB|C Chain C, Drosophila Nucleosome Structure
pdb|2NQB|G Chain G, Drosophila Nucleosome Structure
Length = 123
Score = 188 bits (477), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82
LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH
Sbjct: 22 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 81
Query: 83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 113
LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA
Sbjct: 82 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 112
>pdb|2PYO|C Chain C, Drosophila Nucleosome Core
pdb|2PYO|G Chain G, Drosophila Nucleosome Core
Length = 120
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82
LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH
Sbjct: 22 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 81
Query: 83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 113
LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA
Sbjct: 82 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 112
>pdb|2NQB|D Chain D, Drosophila Nucleosome Structure
pdb|2NQB|H Chain H, Drosophila Nucleosome Structure
Length = 123
Score = 186 bits (473), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 92/107 (85%), Positives = 94/107 (87%)
Query: 224 QKNIAXXXXXXXXXXXESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESS 283
QKNI ESYAIYIY VLKQVHPDTG+SSKAMSIMNSFVNDIFERIAAE+S
Sbjct: 17 QKNITKTDKKKKRKRKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEAS 76
Query: 284 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 330
RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 77 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>pdb|3C9K|B Chain B, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|F Chain F, Model Of Histone Octamer Tubular Crystals
Length = 125
Score = 182 bits (462), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 86/91 (94%), Positives = 90/91 (98%)
Query: 240 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 299
ESY+IY+YKVLKQVHPDTG+SSKAMSIMNSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 35 ESYSIYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 94
Query: 300 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 330
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 95 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 125
>pdb|1S32|D Chain D, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|H Chain H, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|3LJA|D Chain D, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|H Chain H, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3KXB|D Chain D, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|H Chain H, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3MVD|D Chain D, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|H Chain H, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3O62|D Chain D, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|H Chain H, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3TU4|D Chain D, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|H Chain H, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|D Chain D, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|H Chain H, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|D Chain D, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|H Chain H, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|D Chain D, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|H Chain H, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|D Chain D, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|H Chain H, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|D Chain D, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|H Chain H, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
Length = 122
Score = 182 bits (461), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 240 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 299
ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 32 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 91
Query: 300 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 330
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 92 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 122
>pdb|2F8N|H Chain H, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 123
Score = 182 bits (461), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 240 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 299
ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 33 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 92
Query: 300 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 330
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 93 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 123
>pdb|1F66|D Chain D, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|H Chain H, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 126
Score = 182 bits (461), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 240 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 299
ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 36 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 95
Query: 300 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 330
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 126
>pdb|3C1B|D Chain D, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|H Chain H, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|D Chain D, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|H Chain H, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 125
Score = 182 bits (461), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 240 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 299
ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 35 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 94
Query: 300 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 330
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 95 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 125
>pdb|1ZLA|D Chain D, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|H Chain H, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
Length = 125
Score = 182 bits (461), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 240 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 299
ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 35 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 94
Query: 300 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 330
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 95 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 125
>pdb|1P34|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 125
Score = 181 bits (460), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 240 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 299
ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 35 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 94
Query: 300 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 330
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 95 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 125
>pdb|1KX3|D Chain D, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|H Chain H, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|D Chain D, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|H Chain H, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|D Chain D, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|H Chain H, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1M18|D Chain D, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|H Chain H, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|D Chain D, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|H Chain H, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|D Chain D, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|H Chain H, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1ZBB|D Chain D, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|H Chain H, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|DD Chain d, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|HH Chain h, Structure Of The 4_601_167 Tetranucleosome
pdb|2FJ7|D Chain D, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|H Chain H, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2NZD|D Chain D, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|H Chain H, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3B6F|D Chain D, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|H Chain H, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|D Chain D, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|H Chain H, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3KUY|D Chain D, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|H Chain H, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3LEL|D Chain D, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|H Chain H, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|N Chain N, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|R Chain R, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3MGP|D Chain D, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|H Chain H, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|D Chain D, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|H Chain H, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|D Chain D, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|H Chain H, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|D Chain D, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|H Chain H, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3LZ0|D Chain D, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|H Chain H, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|D Chain D, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|H Chain H, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3MNN|D Chain D, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|H Chain H, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3UT9|D Chain D, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|H Chain H, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|D Chain D, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|H Chain H, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|D Chain D, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|H Chain H, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
Length = 125
Score = 181 bits (460), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 240 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 299
ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 35 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 94
Query: 300 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 330
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 95 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 125
>pdb|1AOI|D Chain D, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|H Chain H, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 99
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 240 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 299
ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 9 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 68
Query: 300 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 330
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 69 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 99
>pdb|3KWQ|D Chain D, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|H Chain H, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
Length = 93
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 240 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 299
ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 3 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 62
Query: 300 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 330
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 63 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 93
>pdb|1U35|D Chain D, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|H Chain H, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|2F8N|D Chain D, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 126
Score = 179 bits (455), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 84/91 (92%), Positives = 90/91 (98%)
Query: 240 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 299
ESY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA+E+SRLAHYNKRSTITSRE+
Sbjct: 36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREV 95
Query: 300 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 330
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>pdb|1EQZ|B Chain B, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|F Chain F, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|B Chain B, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|F Chain F, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|B Chain B, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|F Chain F, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2ARO|B Chain B, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|F Chain F, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
Length = 126
Score = 179 bits (455), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 240 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 299
ESY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 300 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 330
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>pdb|1EQZ|A Chain A, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|E Chain E, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|A Chain A, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|E Chain E, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|A Chain A, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|E Chain E, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2ARO|A Chain A, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|E Chain E, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
Length = 129
Score = 179 bits (455), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 88/91 (96%)
Query: 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 83
Query: 83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 113
LQLAIRNDEELNKLL VTIAQGGVLPNIQA
Sbjct: 84 LQLAIRNDEELNKLLGKVTIAQGGVLPNIQA 114
>pdb|2HIO|B Chain B, Histone Octamer (Chicken), Chromosomal Protein
Length = 125
Score = 179 bits (455), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 240 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 299
ESY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 35 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 94
Query: 300 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 330
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 95 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 125
>pdb|2HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein
pdb|3C9K|A Chain A, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|E Chain E, Model Of Histone Octamer Tubular Crystals
Length = 128
Score = 179 bits (454), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 88/91 (96%)
Query: 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 113
LQLAIRNDEELNKLL VTIAQGGVLPNIQA
Sbjct: 83 LQLAIRNDEELNKLLGKVTIAQGGVLPNIQA 113
>pdb|3A6N|D Chain D, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|H Chain H, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3AFA|D Chain D, The Human Nucleosome Structure
pdb|3AFA|H Chain H, The Human Nucleosome Structure
pdb|3AV1|D Chain D, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|H Chain H, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV2|D Chain D, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|H Chain H, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AYW|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AZE|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZF|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZG|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZH|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZI|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZJ|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZK|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZL|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZM|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZN|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 129
Score = 179 bits (453), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 84/91 (92%), Positives = 89/91 (97%)
Query: 240 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 299
ESY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 39 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 98
Query: 300 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 330
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 99 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 129
>pdb|3C1B|C Chain C, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|G Chain G, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|C Chain C, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|G Chain G, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 129
Score = 178 bits (452), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 83/91 (91%), Positives = 88/91 (96%)
Query: 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 113
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+
Sbjct: 83 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQS 113
>pdb|1ZBB|C Chain C, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|G Chain G, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|CC Chain c, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|GG Chain g, Structure Of The 4_601_167 Tetranucleosome
pdb|2FJ7|C Chain C, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|G Chain G, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|3LJA|C Chain C, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|G Chain G, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3KXB|C Chain C, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|G Chain G, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3MVD|C Chain C, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|G Chain G, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3TU4|C Chain C, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|G Chain G, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|C Chain C, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|G Chain G, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|C Chain C, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|G Chain G, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|C Chain C, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|G Chain G, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|C Chain C, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|G Chain G, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|C Chain C, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|G Chain G, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3UT9|C Chain C, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|G Chain G, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|C Chain C, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|G Chain G, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|C Chain C, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|G Chain G, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
Length = 129
Score = 178 bits (452), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 83/91 (91%), Positives = 88/91 (96%)
Query: 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 113
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+
Sbjct: 83 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQS 113
>pdb|2CV5|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Length = 126
Score = 178 bits (451), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 83/91 (91%), Positives = 89/91 (97%)
Query: 240 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 299
ESY++Y+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 300 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 330
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 126
>pdb|1M18|C Chain C, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|G Chain G, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|C Chain C, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|G Chain G, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|C Chain C, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|G Chain G, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1P34|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 129
Score = 178 bits (451), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 83/91 (91%), Positives = 88/91 (96%)
Query: 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 113
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+
Sbjct: 83 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQS 113
>pdb|2CV5|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Length = 130
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/91 (92%), Positives = 88/91 (96%)
Query: 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82
LQFPVGR+HRLLRKGNY+ERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 24 LQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 83
Query: 83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 113
LQLAIRNDEELNKLL VTIAQGGVLPNIQA
Sbjct: 84 LQLAIRNDEELNKLLGRVTIAQGGVLPNIQA 114
>pdb|3A6N|C Chain C, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|G Chain G, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3AFA|C Chain C, The Human Nucleosome Structure
pdb|3AFA|G Chain G, The Human Nucleosome Structure
pdb|3AV1|C Chain C, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|G Chain G, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV2|C Chain C, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|G Chain G, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AN2|C Chain C, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|G Chain G, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AYW|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AZE|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZF|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZG|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZH|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZI|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZJ|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZK|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZL|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZM|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZN|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 133
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/91 (92%), Positives = 88/91 (96%)
Query: 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82
LQFPVGR+HRLLRKGNY+ERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 27 LQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 86
Query: 83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 113
LQLAIRNDEELNKLL VTIAQGGVLPNIQA
Sbjct: 87 LQLAIRNDEELNKLLGRVTIAQGGVLPNIQA 117
>pdb|2F8N|K Chain K, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 149
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/91 (92%), Positives = 88/91 (96%)
Query: 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82
LQFPVGR+HRLLRKGNY+ERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 43 LQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 102
Query: 83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 113
LQLAIRNDEELNKLL VTIAQGGVLPNIQA
Sbjct: 103 LQLAIRNDEELNKLLGRVTIAQGGVLPNIQA 133
>pdb|2XQL|B Chain B, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|D Chain D, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|F Chain F, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|H Chain H, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|J Chain J, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5)
Length = 90
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/90 (93%), Positives = 88/90 (97%)
Query: 241 SYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQ 300
SY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQ
Sbjct: 1 SYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQ 60
Query: 301 TAVRLLLPGELAKHAVSEGTKAVTKYTSSK 330
TAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 61 TAVRLLLPGELAKHAVSEGTKAVTKYTSSK 90
>pdb|1S32|C Chain C, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|G Chain G, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|2NZD|C Chain C, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|G Chain G, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3KUY|C Chain C, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|G Chain G, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3MGP|C Chain C, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|G Chain G, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|C Chain C, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|G Chain G, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|C Chain C, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|G Chain G, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|C Chain C, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|G Chain G, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3LZ0|C Chain C, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|G Chain G, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|C Chain C, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|G Chain G, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3MNN|C Chain C, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|G Chain G, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
Length = 119
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/91 (91%), Positives = 88/91 (96%)
Query: 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 113
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+
Sbjct: 83 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQS 113
>pdb|1AOI|C Chain C, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|G Chain G, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 116
Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 83/91 (91%), Positives = 88/91 (96%)
Query: 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 20 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 79
Query: 83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 113
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+
Sbjct: 80 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQS 110
>pdb|1KX3|C Chain C, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|G Chain G, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|C Chain C, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|G Chain G, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|C Chain C, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|G Chain G, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|3B6F|C Chain C, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|G Chain G, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|C Chain C, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|G Chain G, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3LEL|C Chain C, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|G Chain G, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|M Chain M, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|Q Chain Q, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3O62|C Chain C, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|G Chain G, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
Length = 128
Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 83/91 (91%), Positives = 88/91 (96%)
Query: 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 113
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+
Sbjct: 83 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQS 113
>pdb|3KWQ|C Chain C, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|G Chain G, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
Length = 107
Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 83/91 (91%), Positives = 88/91 (96%)
Query: 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 10 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 69
Query: 83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 113
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+
Sbjct: 70 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQS 100
>pdb|1ZLA|C Chain C, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|G Chain G, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
Length = 129
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/91 (89%), Positives = 86/91 (94%)
Query: 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGN RDNKKTRIIPRH
Sbjct: 23 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNWERDNKKTRIIPRH 82
Query: 83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 113
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+
Sbjct: 83 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQS 113
>pdb|3AN2|D Chain D, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|H Chain H, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
Length = 129
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/91 (90%), Positives = 87/91 (95%)
Query: 240 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 299
ESY+IY+YKVLKQVHPDTG+SSKA I NSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 39 ESYSIYVYKVLKQVHPDTGISSKAXGIXNSFVNDIFERIAGEASRLAHYNKRSTITSREI 98
Query: 300 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 330
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 99 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 129
>pdb|1HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 95
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/87 (93%), Positives = 84/87 (96%)
Query: 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 9 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 68
Query: 83 LQLAIRNDEELNKLLSGVTIAQGGVLP 109
LQLAIRNDEELNKLL VTIAQGGVLP
Sbjct: 69 LQLAIRNDEELNKLLGKVTIAQGGVLP 95
>pdb|1HIO|B Chain B, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 90
Score = 168 bits (426), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 81/90 (90%), Positives = 86/90 (95%)
Query: 241 SYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQ 300
SY+IY+YKVLKQVHPDTG+SSKAM MNSFVNDIFERIA +SRLAHYNKRSTITSREIQ
Sbjct: 1 SYSIYVYKVLKQVHPDTGISSKAMGSMNSFVNDIFERIAGLASRLAHYNKRSTITSREIQ 60
Query: 301 TAVRLLLPGELAKHAVSEGTKAVTKYTSSK 330
TAVRLLLPGELAKHAVSEGTKAVTK+TSSK
Sbjct: 61 TAVRLLLPGELAKHAVSEGTKAVTKHTSSK 90
>pdb|1ID3|C Chain C, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|G Chain G, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 131
Score = 168 bits (425), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 77/90 (85%), Positives = 85/90 (94%)
Query: 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82
L FPVGR+HRLLR+GNYA+R+G+GAPVYL AV+EYLAAE+LELAGNAARDNKKTRIIPRH
Sbjct: 24 LTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRH 83
Query: 83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQ 112
LQLAIRND+ELNKLL VTIAQGGVLPNI
Sbjct: 84 LQLAIRNDDELNKLLGNVTIAQGGVLPNIH 113
>pdb|2XQL|A Chain A, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|C Chain C, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|E Chain E, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|G Chain G, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|I Chain I, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5)
Length = 91
Score = 162 bits (409), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 77/83 (92%), Positives = 80/83 (96%)
Query: 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 9 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 68
Query: 83 LQLAIRNDEELNKLLSGVTIAQG 105
LQLAIRNDEELNKLL VTIAQG
Sbjct: 69 LQLAIRNDEELNKLLGKVTIAQG 91
>pdb|1ID3|D Chain D, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|H Chain H, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 130
Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 85/90 (94%)
Query: 240 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 299
E+Y+ YIYKVLKQ HPDTG+S K+MSI+NSFVNDIFERIA E+S+LA YNK+STI++REI
Sbjct: 38 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREI 97
Query: 300 QTAVRLLLPGELAKHAVSEGTKAVTKYTSS 329
QTAVRL+LPGELAKHAVSEGT+AVTKY+SS
Sbjct: 98 QTAVRLILPGELAKHAVSEGTRAVTKYSSS 127
>pdb|2HUE|B Chain B, Structure Of The H3-h4 Chaperone Asf1 Bound To Histones H3
And H4
Length = 77
Score = 155 bits (391), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 74/75 (98%), Positives = 74/75 (98%)
Query: 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 566
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIM
Sbjct: 3 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 62
Query: 567 PKDIQLARRIRGERA 581
PKDIQLARRIRGERA
Sbjct: 63 PKDIQLARRIRGERA 77
>pdb|4EO5|B Chain B, Yeast Asf1 Bound To H3H4G94P MUTANT
Length = 76
Score = 155 bits (391), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 74/75 (98%), Positives = 74/75 (98%)
Query: 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 566
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIM
Sbjct: 2 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 61
Query: 567 PKDIQLARRIRGERA 581
PKDIQLARRIRGERA
Sbjct: 62 PKDIQLARRIRGERA 76
>pdb|2JSS|A Chain A, Nmr Structure Of Chaperone Chz1 Complexed With Histone
H2a.Z-H2b
Length = 192
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 82/87 (94%)
Query: 240 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 299
E+Y+ YIYKVLKQ HPDTG+S K+MSI+NSFVNDIFERIA E+S+LA YNK+STI++REI
Sbjct: 3 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREI 62
Query: 300 QTAVRLLLPGELAKHAVSEGTKAVTKY 326
QTAVRL+LPGELAKHAVSEGT+AVTKY
Sbjct: 63 QTAVRLILPGELAKHAVSEGTRAVTKY 89
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Query: 23 LQFPVGRIHRLL-RKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 81
LQFPVGRI R L R RVG+ A +YL AV+EYL AEVLELAGNAA+D K RI PR
Sbjct: 104 LQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPR 163
Query: 82 HLQLAIRNDEELNKLLSGVTIAQGGVLPNI 111
HLQLAIR D+EL+ L+ TIA GGVLP+I
Sbjct: 164 HLQLAIRGDDELDSLIRA-TIASGGVLPHI 192
>pdb|1U35|C Chain C, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|G Chain G, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|2F8N|G Chain G, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 120
Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 73/88 (82%)
Query: 25 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQ 84
FPVGR+ R ++KG+ R+G GAPVY+AAV+EYL AE+LELA NAARDNKK R+ PRH+
Sbjct: 23 FPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHIL 82
Query: 85 LAIRNDEELNKLLSGVTIAQGGVLPNIQ 112
LA+ NDEELN+LL GVTIA GGVLPNI
Sbjct: 83 LAVANDEELNQLLKGVTIASGGVLPNIH 110
>pdb|2YFV|A Chain A, The Heterotrimeric Complex Of Kluyveromyces Lactis Scm3,
Cse4 And H4
Length = 100
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/95 (66%), Positives = 78/95 (82%), Gaps = 3/95 (3%)
Query: 486 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSSAVMALQEAS 542
RY+P +AL EIR+YQ+ST+LLI ++PF RLV+E+ F T+ LR+QS A+MALQEAS
Sbjct: 6 RYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEAS 65
Query: 543 EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 577
EAYLVGL E TNL A+HAKR+TIM KD+QLARRIR
Sbjct: 66 EAYLVGLLEHTNLLALHAKRITIMRKDMQLARRIR 100
>pdb|2YFW|A Chain A, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|C Chain C, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|E Chain E, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|G Chain G, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
Length = 92
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 75/90 (83%), Gaps = 3/90 (3%)
Query: 493 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSSAVMALQEASEAYLVGL 549
AL EIR+YQ+ST+LLI ++PF RLV+E+ F T+ LR+QS A+MALQEASEAYLVGL
Sbjct: 1 ALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGL 60
Query: 550 FEDTNLCAIHAKRVTIMPKDIQLARRIRGE 579
E TNL A+HAKR+TIM KD+QLARRIRG+
Sbjct: 61 LEHTNLLALHAKRITIMRKDMQLARRIRGQ 90
>pdb|3AN2|A Chain A, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|E Chain E, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
Length = 143
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 84/132 (63%), Gaps = 9/132 (6%)
Query: 454 RKSTGGKAPRKQLATKAAR----KSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 508
R+S +APR++ + + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 8 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 65
Query: 509 RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 566
RKLPF RL REI F D +Q+ A++ALQEA+EA+LV LFED L +HA RVT+
Sbjct: 66 RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 125
Query: 567 PKDIQLARRIRG 578
PKD+QLARRIRG
Sbjct: 126 PKDVQLARRIRG 137
>pdb|3R45|A Chain A, Structure Of A Cenp-A-Histone H4 Heterodimer In Complex
With Chaperone Hjurp
Length = 156
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 84/132 (63%), Gaps = 9/132 (6%)
Query: 454 RKSTGGKAPRKQLATKAAR----KSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 508
R+S +APR++ + + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 21 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 78
Query: 509 RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 566
RKLPF RL REI F D +Q+ A++ALQEA+EA+LV LFED L +HA RVT+
Sbjct: 79 RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 138
Query: 567 PKDIQLARRIRG 578
PKD+QLARRIRG
Sbjct: 139 PKDVQLARRIRG 150
>pdb|3NQU|A Chain A, Crystal Structure Of Partially Trypsinized (Cenp-AH4)2
HETEROTETRAMER
Length = 140
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 84/132 (63%), Gaps = 9/132 (6%)
Query: 454 RKSTGGKAPRKQLATKAAR----KSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 508
R+S +APR++ + + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
Query: 509 RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 566
RKLPF RL REI F D +Q+ A++ALQEA+EA+LV LFED L +HA RVT+
Sbjct: 63 RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
Query: 567 PKDIQLARRIRG 578
PKD+QLARRIRG
Sbjct: 123 PKDVQLARRIRG 134
>pdb|1F66|C Chain C, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|G Chain G, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 128
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 69/91 (75%), Gaps = 2/91 (2%)
Query: 23 LQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 81
LQFPVGRIHR L+ + RVGA A VY AA++EYL AEVLELAGNA++D K RI PR
Sbjct: 26 LQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 85
Query: 82 HLQLAIRNDEELNKLLSGVTIAQGGVLPNIQ 112
HLQLAIR DEEL+ L+ TIA GGV+P+I
Sbjct: 86 HLQLAIRGDEELDSLIK-ATIAGGGVIPHIH 115
>pdb|2L5A|A Chain A, Structural Basis For Recognition Of Centromere Specific
Histone H3 Variant By Nonhistone Scm3
Length = 235
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 65/78 (83%), Gaps = 3/78 (3%)
Query: 505 ELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAK 561
+LLI K+PF RLV+E+ +F T DLR+QS A+MALQEASEAYLVGL E TNL A+HAK
Sbjct: 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAK 68
Query: 562 RVTIMPKDIQLARRIRGE 579
R+TIM KD+QLARRIRG+
Sbjct: 69 RITIMKKDMQLARRIRGQ 86
>pdb|3NQJ|A Chain A, Crystal Structure Of (Cenp-AH4)2 HETEROTETRAMER
Length = 82
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 56/75 (74%), Gaps = 2/75 (2%)
Query: 506 LLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRV 563
LLIRKLPF RL REI F D +Q+ A++ALQEA+EA+LV LFED L +HA RV
Sbjct: 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRV 61
Query: 564 TIMPKDIQLARRIRG 578
T+ PKD+QLARRIRG
Sbjct: 62 TLFPKDVQLARRIRG 76
>pdb|2LY8|A Chain A, The Budding Yeast Chaperone Scm3 Recognizes The Partially
Unfolded Dimer Of The Centromere-specific Cse4/h4
Histone Variant
Length = 121
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 44/56 (78%), Gaps = 3/56 (5%)
Query: 507 LIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIH 559
LI K+PF RLV+E+ +F T DLR+QS A+MALQEASEAYLVGL E TNL A+H
Sbjct: 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALH 56
>pdb|4FT4|P Chain P, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
pdb|4FT4|Q Chain Q, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
Length = 32
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/32 (96%), Positives = 31/32 (96%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKAARKSAPAT 478
ARTKQTAR STGGKAPRKQLATKAARKSAPAT
Sbjct: 1 ARTKQTARXSTGGKAPRKQLATKAARKSAPAT 32
>pdb|3N9P|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
And Nog
pdb|3N9P|C Chain C, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
And Nog
Length = 32
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/32 (90%), Positives = 30/32 (93%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKAARKSAPAT 478
ART QTARKSTGGKAPRKQLATKAAR SAPA+
Sbjct: 1 ARTXQTARKSTGGKAPRKQLATKAARXSAPAS 32
>pdb|3N9N|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
And Nog
pdb|3N9N|C Chain C, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
And Nog
Length = 32
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/32 (90%), Positives = 30/32 (93%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKAARKSAPAT 478
ART QTAR STGGKAPRKQLATKAARKSAPA+
Sbjct: 1 ARTXQTARXSTGGKAPRKQLATKAARKSAPAS 32
>pdb|4HSU|C Chain C, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 30
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/30 (96%), Positives = 29/30 (96%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKAARKSAP 476
ART QTARKSTGGKAPRKQLATKAARKSAP
Sbjct: 1 ARTMQTARKSTGGKAPRKQLATKAARKSAP 30
>pdb|4GU0|E Chain E, Crystal Structure Of Lsd2 With H3
pdb|4GU0|F Chain F, Crystal Structure Of Lsd2 With H3
Length = 26
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/26 (96%), Positives = 25/26 (96%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKAAR 472
ART QTARKSTGGKAPRKQLATKAAR
Sbjct: 1 ARTMQTARKSTGGKAPRKQLATKAAR 26
>pdb|3U5P|I Chain I, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|J Chain J, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|K Chain K, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|L Chain L, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|M Chain M, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|N Chain N, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|O Chain O, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|P Chain P, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 28
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKAARKS 474
ARTKQTAR STGG APR QLAT AARKS
Sbjct: 1 ARTKQTARXSTGGXAPRXQLATXAARKS 28
>pdb|2P5B|I Chain I, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2P5B|J Chain J, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2PXJ|I Chain I, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
pdb|2PXJ|J Chain J, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
Length = 22
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 472 RKSAPATGGVKKPHRYRPGTV 492
RKSAPATGGV KPHRYRPGTV
Sbjct: 1 RKSAPATGGVXKPHRYRPGTV 21
>pdb|3A1B|A Chain A, Crystal Structure Of The Dnmt3a Add Domain In Complex With
Histone H3
Length = 159
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/20 (100%), Positives = 20/20 (100%)
Query: 447 ARTKQTARKSTGGKAPRKQL 466
ARTKQTARKSTGGKAPRKQL
Sbjct: 1 ARTKQTARKSTGGKAPRKQL 20
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82
L PV +IH LL++ ++ VY+ AV+EY++A++L+L GN R+ + I +
Sbjct: 103 LSLPVEKIHPLLKEV-LGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQD 161
Query: 83 LQLAIRNDEEL 93
+++A+ D+ L
Sbjct: 162 IKVAMCADKVL 172
>pdb|1Q9C|A Chain A, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|B Chain B, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|C Chain C, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|D Chain D, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|E Chain E, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|F Chain F, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|G Chain G, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|H Chain H, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|I Chain I, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
Length = 191
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82
L PV +IH LL++ ++ VY+ AV+EY++A++L+LAGN R+ + I +
Sbjct: 103 LSLPVEKIHPLLKE-VLGYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQD 161
Query: 83 LQLAIRNDEEL 93
+++A D+ L
Sbjct: 162 IKVAXCADKVL 172
>pdb|2X4W|B Chain B, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|B Chain B, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|D Chain D, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|F Chain F, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|H Chain H, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|B Chain B, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|D Chain D, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|F Chain F, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|H Chain H, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|J Chain J, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|L Chain L, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|N Chain N, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|P Chain P, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1
Length = 21
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 468 TKAARKSAPATGGVKKPHRYR 488
TKAARKSAPATGGV KPHRYR
Sbjct: 1 TKAARKSAPATGGVXKPHRYR 21
>pdb|3KV4|B Chain B, Structure Of Phf8 In Complex With Histone H3
Length = 24
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/24 (91%), Positives = 22/24 (91%)
Query: 447 ARTKQTARKSTGGKAPRKQLATKA 470
ART QTAR STGGKAPRKQLATKA
Sbjct: 1 ARTXQTARXSTGGKAPRKQLATKA 24
>pdb|3AVR|B Chain B, Catalytic Fragment Of UtxKDM6A BOUND WITH HISTONE H3K27ME3
PEPTIDE, N-Oxyalylglycine, And Ni(Ii)
Length = 22
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/22 (95%), Positives = 21/22 (95%)
Query: 463 RKQLATKAARKSAPATGGVKKP 484
RKQLATKAAR SAPATGGVKKP
Sbjct: 1 RKQLATKAARXSAPATGGVKKP 22
>pdb|2KFT|B Chain B, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 21
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 447 ARTKQTARKSTGGKAPRKQLA 467
ARTKQTARKSTGGKAPRKQL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLC 21
>pdb|2KWK|B Chain B, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
Type
Length = 20
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/20 (100%), Positives = 20/20 (100%)
Query: 447 ARTKQTARKSTGGKAPRKQL 466
ARTKQTARKSTGGKAPRKQL
Sbjct: 1 ARTKQTARKSTGGKAPRKQL 20
>pdb|2UXN|E Chain E, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
Length = 21
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 447 ARTKQTARKSTGGKAPRKQLA 467
ART QTARKSTGGKAPRKQLA
Sbjct: 1 ARTXQTARKSTGGKAPRKQLA 21
>pdb|2V1D|C Chain C, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|4GUR|C Chain C, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|C Chain C, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
Length = 21
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 447 ARTKQTARKSTGGKAPRKQLA 467
ART QTARKSTGGKAPRKQLA
Sbjct: 1 ARTMQTARKSTGGKAPRKQLA 21
>pdb|2G46|C Chain C, Structure Of Vset In Complex With Mek27 H3 Pept. And
Cofactor Product Sah
pdb|2G46|D Chain D, Structure Of Vset In Complex With Mek27 H3 Pept. And
Cofactor Product Sah
Length = 21
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 459 GKAPRKQLATKAARKSAPATG 479
GKAPRKQLATKAAR SAPATG
Sbjct: 1 GKAPRKQLATKAARXSAPATG 21
>pdb|2YBA|C Chain C, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|D Chain D, Crystal Structure Of Nurf55 In Complex With Histone H3
Length = 19
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/19 (100%), Positives = 19/19 (100%)
Query: 447 ARTKQTARKSTGGKAPRKQ 465
ARTKQTARKSTGGKAPRKQ
Sbjct: 1 ARTKQTARKSTGGKAPRKQ 19
>pdb|1M1D|B Chain B, Tetrahymena Gcn5 With Bound Bisubstrate Analog Inhibitor
pdb|1M1D|D Chain D, Tetrahymena Gcn5 With Bound Bisubstrate Analog Inhibitor
pdb|2KTB|A Chain A, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
pdb|2KWJ|B Chain B, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3 Bound To A Histone Peptide
Containing Acetylation At Lysine 14
Length = 20
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/20 (95%), Positives = 19/20 (95%)
Query: 447 ARTKQTARKSTGGKAPRKQL 466
ARTKQTARKSTGG APRKQL
Sbjct: 1 ARTKQTARKSTGGXAPRKQL 20
>pdb|2K3Y|A Chain A, Solution Structure Of Eaf3 Chromo Barrel Domain Bound To
Histone H3 With A Dimethyllysine Analog H3k36me2
Length = 136
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 19/29 (65%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 461 APRKQLATKAARK-SAPATGGVKKPHRYR 488
A +K+LA +A SAPATGGV KPHRYR
Sbjct: 108 AMKKRLANEAGSTGSAPATGGVXKPHRYR 136
>pdb|4FWF|E Chain E, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
Length = 20
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/20 (95%), Positives = 19/20 (95%)
Query: 447 ARTKQTARKSTGGKAPRKQL 466
ART QTARKSTGGKAPRKQL
Sbjct: 1 ARTMQTARKSTGGKAPRKQL 20
>pdb|3U5O|I Chain I, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|J Chain J, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|K Chain K, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|L Chain L, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|M Chain M, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|N Chain N, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|O Chain O, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|P Chain P, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
Length = 22
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/22 (86%), Positives = 19/22 (86%)
Query: 447 ARTKQTARKSTGGKAPRKQLAT 468
ARTKQTAR STGG APR QLAT
Sbjct: 1 ARTKQTARXSTGGXAPRXQLAT 22
>pdb|3O34|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
Length = 22
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/20 (95%), Positives = 19/20 (95%)
Query: 459 GKAPRKQLATKAARKSAPAT 478
GKAPRKQLAT AARKSAPAT
Sbjct: 1 GKAPRKQLATXAARKSAPAT 20
>pdb|1PU9|B Chain B, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A 19-Residue Histone H3 Peptide
Length = 19
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/19 (94%), Positives = 19/19 (100%)
Query: 451 QTARKSTGGKAPRKQLATK 469
QTARKSTGGKAPRKQLA+K
Sbjct: 1 QTARKSTGGKAPRKQLASK 19
>pdb|2B2W|D Chain D, Tandem Chromodomains Of Human Chd1 Complexed With Histone
H3 Tail Containing Trimethyllysine 4
Length = 20
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/20 (90%), Positives = 18/20 (90%)
Query: 447 ARTKQTARKSTGGKAPRKQL 466
ART QTARKSTGGKAPRKQ
Sbjct: 1 ARTXQTARKSTGGKAPRKQY 20
>pdb|3U5N|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
Length = 20
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/20 (90%), Positives = 18/20 (90%)
Query: 447 ARTKQTARKSTGGKAPRKQL 466
ARTKQTAR STGG APRKQL
Sbjct: 1 ARTKQTARXSTGGXAPRKQL 20
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 22/39 (56%)
Query: 452 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG 490
TARKSTGG APRK RK A GG + +Y PG
Sbjct: 7 TARKSTGGXAPRKGGMVVKKRKLATEAGGSDERPKYLPG 45
>pdb|1PUA|B Chain B, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A Phosphorylated, 19-Residue Histone H3 Peptide
Length = 19
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/19 (89%), Positives = 18/19 (94%)
Query: 451 QTARKSTGGKAPRKQLATK 469
QTARK TGGKAPRKQLA+K
Sbjct: 1 QTARKXTGGKAPRKQLASK 19
>pdb|2B2T|D Chain D, Tandem Chromodomains Of Human Chd1 Complexed With Histone
H3 Tail Containing Trimethyllysine 4 And
Phosphothreonine 3
Length = 20
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/20 (85%), Positives = 17/20 (85%)
Query: 447 ARTKQTARKSTGGKAPRKQL 466
AR QTARKSTGGKAPRKQ
Sbjct: 1 ARXXQTARKSTGGKAPRKQY 20
>pdb|2Q8D|F Chain F, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8D|G Chain G, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8E|F Chain F, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
pdb|2Q8E|G Chain G, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
Length = 16
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 472 RKSAPATGGVKKPHRY 487
RKSAPATGGV KPHRY
Sbjct: 1 RKSAPATGGVXKPHRY 16
>pdb|3V43|Q Chain Q, Crystal Structure Of Moz
Length = 18
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/18 (94%), Positives = 17/18 (94%)
Query: 447 ARTKQTARKSTGGKAPRK 464
ARTKQTARKSTGG APRK
Sbjct: 1 ARTKQTARKSTGGXAPRK 18
>pdb|3QNK|A Chain A, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
pdb|3QNK|B Chain B, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
pdb|3QNK|C Chain C, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
pdb|3QNK|D Chain D, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
Length = 517
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 360 NSSLGDGDAG-----QELVQLFVVADG----QLQVTGDDTGLLVVTCGV-AGQLENFSGQ 409
N GD G QEL+ F ADG Q D + TCG+ G+ F
Sbjct: 263 NDKYGDRGWGGLGPTQELIDAFEXADGTPATQYSQAPADQVFDINTCGIYEGREPRFYAN 322
Query: 410 ILHDGGQVDGSAGSDALGVVALAQETVDSSDGEL 443
I+ G Q+ +A A+ V +T D DG L
Sbjct: 323 IVFHGSQIFFNADKGAVTVDRYLXDTPDKGDGSL 356
>pdb|2RSN|B Chain B, Solution Structure Of The Chromodomain Of Chp1 In Complex
With H3k9me3 Peptide
Length = 18
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/17 (94%), Positives = 16/17 (94%)
Query: 447 ARTKQTARKSTGGKAPR 463
ARTKQTAR STGGKAPR
Sbjct: 1 ARTKQTARXSTGGKAPR 17
>pdb|3N9O|C Chain C, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|4GY5|E Chain E, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|F Chain F, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 17
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/17 (94%), Positives = 16/17 (94%)
Query: 447 ARTKQTARKSTGGKAPR 463
ARTKQTAR STGGKAPR
Sbjct: 1 ARTKQTARXSTGGKAPR 17
>pdb|1PDQ|B Chain B, Polycomb Chromodomain Complexed With The Histone H3 Tail
Containing Trimethyllysine 27
Length = 18
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 17/18 (94%)
Query: 461 APRKQLATKAARKSAPAT 478
APRKQLATKAAR SAP+T
Sbjct: 1 APRKQLATKAARXSAPST 18
>pdb|4EDU|T Chain T, The Mbt Repeats Of Human Scml2 In A Complex With Histone
H2a Peptide
Length = 16
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 14/16 (87%), Positives = 15/16 (93%)
Query: 30 IHRLLRKGNYAERVGA 45
+HRLLR GNYAERVGA
Sbjct: 1 VHRLLRXGNYAERVGA 16
>pdb|2VPG|P Chain P, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
pdb|2VPG|R Chain R, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 18
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 16/18 (88%)
Query: 447 ARTKQTARKSTGGKAPRK 464
A T QTARKSTGGKAPRK
Sbjct: 1 AXTXQTARKSTGGKAPRK 18
>pdb|4EYU|A Chain A, The Free Structure Of The Mouse C-Terminal Domain Of Kdm6b
pdb|4EYU|B Chain B, The Free Structure Of The Mouse C-Terminal Domain Of Kdm6b
pdb|4EZ4|A Chain A, Free Kdm6b Structure
pdb|4EZ4|B Chain B, Free Kdm6b Structure
pdb|4EZH|A Chain A, The Crystal Structure Of Kdm6b Bound With H3k27me3 Peptide
pdb|4EZH|B Chain B, The Crystal Structure Of Kdm6b Bound With H3k27me3 Peptide
Length = 486
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 465 QLATKAARKSAPATGG--VKKPHRYRPGT-VALREIRRYQKSTELLIRKLPFQRL 516
Q TKAARKSAPATGG H + GT + L + +R++ + L++ F R+
Sbjct: 145 QGPTKAARKSAPATGGGSSGSHHIIKFGTNIDLSDAKRWKPQLQELLKLPAFMRV 199
>pdb|2IIJ|B Chain B, Structure Of Human Asf1a In Complex With Histone H3
Length = 18
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 566 MPKDIQLARRIRGERA 581
M KDIQLARRIRGERA
Sbjct: 3 MGKDIQLARRIRGERA 18
>pdb|2X0L|C Chain C, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 16
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 447 ARTKQTARKSTGGKAP 462
ART QTARKSTGGKAP
Sbjct: 1 ARTMQTARKSTGGKAP 16
>pdb|3N9Q|C Chain C, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
Length = 17
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/17 (88%), Positives = 16/17 (94%)
Query: 465 QLATKAARKSAPATGGV 481
QLATKAAR SAPA+GGV
Sbjct: 1 QLATKAARXSAPASGGV 17
>pdb|2KVM|B Chain B, Solution Structure Of The Cbx7 Chromodomain In Complex
With A H3k27me2 Peptide
Length = 16
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 461 APRKQLATKAARKSAP 476
APRKQLATKAAR SAP
Sbjct: 1 APRKQLATKAARXSAP 16
>pdb|4A7J|B Chain B, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 16
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 446 MARTKQTARKSTGGKA 461
MA TKQTARKSTGGKA
Sbjct: 1 MAXTKQTARKSTGGKA 16
>pdb|1PEG|P Chain P, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|Q Chain Q, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|2CO0|B Chain B, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
pdb|2CO0|D Chain D, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
pdb|3QLC|C Chain C, Complex Structure Of Atrx Add Domain Bound To Unmodified
H3 1-15 Peptide
pdb|3QLC|D Chain D, Complex Structure Of Atrx Add Domain Bound To Unmodified
H3 1-15 Peptide
pdb|4GNF|C Chain C, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-15
Length = 15
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/15 (100%), Positives = 15/15 (100%)
Query: 447 ARTKQTARKSTGGKA 461
ARTKQTARKSTGGKA
Sbjct: 1 ARTKQTARKSTGGKA 15
>pdb|2VHV|A Chain A, Crystal Structure Of The D270a Mutant Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis In Complex
With Nadh.
pdb|2VHV|B Chain B, Crystal Structure Of The D270a Mutant Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis In Complex
With Nadh
Length = 377
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 358 GQNSSLGDGDAGQELVQLFVVADGQLQVTGDDTGLLVVTCGVAGQLENF-SGQILHDGGQ 416
G+ S++ D D QL AD QV D LL V +A + GQIL
Sbjct: 40 GEGSAITDADFKAAGAQLVGTAD---QVWADADLLLKVKEPIAAEYGRLRHGQILFTFLH 96
Query: 417 VDGS-AGSDAL---GVVALAQETVDSSDGELDTMARTKQTARK 455
+ S A +DAL G ++A ETV ++DG L +A + A +
Sbjct: 97 LAASRACTDALLDSGTTSIAYETVQTADGALPLLAPMSEVAGR 139
>pdb|2VHW|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|C Chain C, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|D Chain D, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|E Chain E, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|F Chain F, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHX|A Chain A, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|B Chain B, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|C Chain C, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|D Chain D, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|E Chain E, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|F Chain F, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHY|A Chain A, Crystal Structure Of Apo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2VHY|B Chain B, Crystal Structure Of Apo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2VHZ|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Closed Conformation
pdb|2VHZ|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Closed Conformation
Length = 377
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 358 GQNSSLGDGDAGQELVQLFVVADGQLQVTGDDTGLLVVTCGVAGQLENF-SGQILHDGGQ 416
G+ S++ D D QL AD QV D LL V +A + GQIL
Sbjct: 40 GEGSAITDADFKAAGAQLVGTAD---QVWADADLLLKVKEPIAAEYGRLRHGQILFTFLH 96
Query: 417 VDGS-AGSDAL---GVVALAQETVDSSDGELDTMARTKQTARK 455
+ S A +DAL G ++A ETV ++DG L +A + A +
Sbjct: 97 LAASRACTDALLDSGTTSIAYETVQTADGALPLLAPMSEVAGR 139
>pdb|2VOE|A Chain A, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|B Chain B, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|C Chain C, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|D Chain D, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|E Chain E, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|F Chain F, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOJ|A Chain A, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
pdb|2VOJ|C Chain C, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
pdb|2VOJ|E Chain E, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
Length = 371
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 358 GQNSSLGDGDAGQELVQLFVVADGQLQVTGDDTGLLVVTCGVAGQLENF-SGQILHDGGQ 416
G+ S++ D D QL AD QV D LL V +A + GQIL
Sbjct: 40 GEGSAITDADFKAAGAQLVGTAD---QVWADADLLLKVKEPIAAEYGRLRHGQILFTFLH 96
Query: 417 VDGS-AGSDAL---GVVALAQETVDSSDGELDTMARTKQTARK 455
+ S A +DAL G ++A ETV ++DG L +A + A +
Sbjct: 97 LAASRACTDALLDSGTTSIAYETVQTADGALPLLAPMSEVAGR 139
>pdb|1GUW|B Chain B, Structure Of The Chromodomain From Mouse Hp1beta In
Complex With The Lysine 9-Methyl Histone H3 N-Terminal
Peptide, Nmr, 25 Structures
Length = 18
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/16 (87%), Positives = 14/16 (87%)
Query: 447 ARTKQTARKSTGGKAP 462
ART QTAR STGGKAP
Sbjct: 1 ARTXQTARXSTGGKAP 16
>pdb|1ZOT|A Chain A, Crystal Structure Analysis Of The CyaaC-Cam With Pmeapp
Length = 358
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 432 AQETVDSSDGELDTMARTKQTARKSTGG-KAPRKQLATKAARKSAPATGGVKKPHRYR 488
A+ +V S D D +ART++ A ++TGG R L K AR A + G + ++R
Sbjct: 199 ARSSVTSGDSVTDYLARTRRAASEATGGLDRERIDLLWKIARAGARSAVGTEARRQFR 256
>pdb|2COL|A Chain A, Crystal Structure Analysis Of CyaaC-Cam With Pyrophosphate
Length = 356
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 432 AQETVDSSDGELDTMARTKQTARKSTGG-KAPRKQLATKAARKSAPATGGVKKPHRYR 488
A+ +V S D D +ART++ A ++TGG R L K AR A + G + ++R
Sbjct: 199 ARSSVTSGDSVTDYLARTRRAASEATGGLDRERIDLLWKIARAGARSAVGTEARRQFR 256
>pdb|1YRU|A Chain A, Crystal Structure Analysis Of The Adenylyl Cyclaes
Catalytic Domain Of Adenylyl Cyclase Toxin Of Bordetella
Pertussis In Presence Of C-Terminal Calmodulin And 1mm
Calcium Chloride
pdb|1YRT|A Chain A, Crystal Structure Analysis Of The Adenylyl Cyclaes
Catalytic Domain Of Adenylyl Cyclase Toxin Of Bordetella
Pertussis In Presence Of C-Terminal Calmodulin
Length = 364
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 432 AQETVDSSDGELDTMARTKQTARKSTGG-KAPRKQLATKAARKSAPATGGVKKPHRYR 488
A+ +V S D D +ART++ A ++TGG R L K AR A + G + ++R
Sbjct: 205 ARSSVTSGDSVTDYLARTRRAASEATGGLDRERIDLLWKIARAGARSAVGTEARRQFR 262
>pdb|3MO8|B Chain B, Pwwp Domain Of Human Bromodomain And Phd Finger-Containing
Protein 1 In Complex With Trimethylated H3k36 Peptide
pdb|2YBP|C Chain C, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBP|D Chain D, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|C Chain C, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|D Chain D, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
Length = 12
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 11/12 (91%), Positives = 11/12 (91%)
Query: 476 PATGGVKKPHRY 487
PATGGV KPHRY
Sbjct: 1 PATGGVXKPHRY 12
>pdb|3Q33|D Chain D, Structure Of The Rtt109-AccoaVPS75 COMPLEX AND
IMPLICATIONS FOR Chaperone-Mediated Histone Acetylation
Length = 15
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/14 (100%), Positives = 14/14 (100%)
Query: 447 ARTKQTARKSTGGK 460
ARTKQTARKSTGGK
Sbjct: 1 ARTKQTARKSTGGK 14
>pdb|2RD3|A Chain A, Crystal Structure Of Tena Homologue (Hp1287) From
Helicobacter Pylori
pdb|2RD3|D Chain D, Crystal Structure Of Tena Homologue (Hp1287) From
Helicobacter Pylori
Length = 223
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 265 SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 324
++M F N I + + E S HY + IT +E+Q A L + ++EG K
Sbjct: 72 AVMREFSNAIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKSYTSYMLAEGFKGSI 131
Query: 325 K 325
K
Sbjct: 132 K 132
>pdb|3IBX|A Chain A, Crystal Structure Of F47y Variant Of Tena (Hp1287) From
Helicobacter Pylori
pdb|3IBX|D Chain D, Crystal Structure Of F47y Variant Of Tena (Hp1287) From
Helicobacter Pylori
Length = 221
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 265 SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 324
++M F N I + + E S HY + IT +E+Q A L + ++EG K
Sbjct: 70 AVMREFSNAIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKSYTSYMLAEGFKGSI 129
Query: 325 K 325
K
Sbjct: 130 K 130
>pdb|2B2V|D Chain D, Crystal Structure Analysis Of Human Chd1 Chromodomains 1
And 2 Bound To Histone H3 Resi 1-15 Mek4
Length = 16
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 447 ARTKQTARKSTGGKA 461
ART QTARKSTGGKA
Sbjct: 1 ARTXQTARKSTGGKA 15
>pdb|1KNA|P Chain P, Chromo Domain Of Hp1 Complexed With Histone H3 Tail
Containing Dimethyllysine 9.
pdb|1KNE|P Chain P, Chromo Domain Of Hp1 Complexed With Histone H3 Tail
Containing Trimethyllysine 9
pdb|1Q3L|P Chain P, Chromodomain Of Hp1 Complexed With Histone H3 Tail
Containing Monomethyllysine 9.
pdb|3G7L|P Chain P, Chromodomain Of Chp1 In Complex With Histone H3k9me3
Peptide
Length = 16
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 447 ARTKQTARKSTGGKA 461
ARTKQTAR STGGKA
Sbjct: 1 ARTKQTARXSTGGKA 15
>pdb|3H91|C Chain C, Crystal Structure Of The Complex Of Human Chromobox
Homolog 2 (Cbx2) And H3k27 Peptide
pdb|3H91|D Chain D, Crystal Structure Of The Complex Of Human Chromobox
Homolog 2 (Cbx2) And H3k27 Peptide
pdb|2L1B|B Chain B, Solution Nmr Structure Of The Chromobox Protein Cbx7 With
H3k27me3
Length = 15
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 465 QLATKAARKSAPATG 479
QLATKAAR SAPATG
Sbjct: 1 QLATKAARXSAPATG 15
>pdb|3UIG|P Chain P, Crystal Structure Of Human Survivin In Complex With T3
Phosphorylated H3(1-15) Peptide
pdb|3UIG|Q Chain Q, Crystal Structure Of Human Survivin In Complex With T3
Phosphorylated H3(1-15) Peptide
Length = 15
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 447 ARTKQTARKSTGGKA 461
AR KQTARKSTGGKA
Sbjct: 1 ARXKQTARKSTGGKA 15
>pdb|2Q8C|F Chain F, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|2Q8C|G Chain G, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|3B95|P Chain P, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|2RNW|B Chain B, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|3FDT|T Chain T, Crystal Structure Of The Complex Of Human Chromobox
Homolog 5 (Cbx5) With H3k9(Me)3 Peptide
pdb|3GV6|B Chain B, Crystal Structure Of Human Chromobox Homolog 6 (Cbx6) With
H3k9 Peptide
pdb|2L11|B Chain B, Solution Nmr Structure Of The Cbx3 In Complex With H3k9me3
Peptide
pdb|2L12|B Chain B, Solution Nmr Structure Of The Chromobox Protein 7 With
H3k9me3
pdb|3QO2|P Chain P, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
pdb|3QO2|Q Chain Q, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
pdb|3QO2|R Chain R, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
pdb|3QO2|S Chain S, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
pdb|3R93|E Chain E, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|F Chain F, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|G Chain G, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|H Chain H, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|2LBM|C Chain C, Solution Structure Of The Add Domain Of Atrx Complexed
With Histone Tail H3 1-15 K9me3
pdb|3QL9|C Chain C, Monoclinic Complex Structure Of Atrx Add Bound To Histone
H3k9me3 Peptide
pdb|3QLA|C Chain C, Hexagonal Complex Structure Of Atrx Add Bound To H3k9me3
Peptide
pdb|3QLA|F Chain F, Hexagonal Complex Structure Of Atrx Add Bound To H3k9me3
Peptide
pdb|4FT2|P Chain P, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4GNG|B Chain B, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
pdb|4GNG|F Chain F, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
Length = 15
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 447 ARTKQTARKSTGGKA 461
ARTKQTAR STGGKA
Sbjct: 1 ARTKQTARXSTGGKA 15
>pdb|2F6J|P Chain P, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2FSA|P Chain P, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FUU|B Chain B, Nmr Solution Structure Of The Phd Domain From The Human
Bptf In Complex With H3(1-15)k4me3 Peptide
pdb|3N9L|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9O|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9Q|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
Length = 15
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 447 ARTKQTARKSTGGKA 461
ART QTARKSTGGKA
Sbjct: 1 ARTXQTARKSTGGKA 15
>pdb|4AWL|C Chain C, The Nf-y Transcription Factor Is Structurally And
Functionally A Sequence Specific Histone
Length = 94
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 34/74 (45%)
Query: 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 83
+ P+ RI ++++ + + A APV A + E+ A DNK+ + +
Sbjct: 16 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDI 75
Query: 84 QLAIRNDEELNKLL 97
+AI ++ + L+
Sbjct: 76 AMAITKFDQFDFLI 89
>pdb|1N1J|B Chain B, Crystal Structure Of The Nf-YbNF-Yc Histone Pair
Length = 97
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 34/74 (45%)
Query: 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 83
+ P+ RI ++++ + + A APV A + E+ A DNK+ + +
Sbjct: 19 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDI 78
Query: 84 QLAIRNDEELNKLL 97
+AI ++ + L+
Sbjct: 79 AMAITKFDQFDFLI 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,987,241
Number of Sequences: 62578
Number of extensions: 450294
Number of successful extensions: 1615
Number of sequences better than 100.0: 152
Number of HSP's better than 100.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1416
Number of HSP's gapped (non-prelim): 195
length of query: 581
length of database: 14,973,337
effective HSP length: 104
effective length of query: 477
effective length of database: 8,465,225
effective search space: 4037912325
effective search space used: 4037912325
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)