Query psy3827
Match_columns 581
No_of_seqs 497 out of 1323
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 18:22:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00018 histone H3; Provision 100.0 1.2E-49 2.6E-54 366.4 10.0 135 446-580 1-135 (136)
2 PLN00121 histone H3; Provision 100.0 1.7E-49 3.6E-54 365.5 9.7 136 446-581 1-136 (136)
3 PLN00158 histone H2B; Provisio 100.0 9.4E-50 2E-54 356.5 5.9 114 210-329 3-116 (116)
4 PLN00161 histone H3; Provision 100.0 3E-48 6.5E-53 355.7 9.0 128 446-580 1-129 (135)
5 PTZ00463 histone H2B; Provisio 100.0 2.3E-48 4.9E-53 347.4 5.5 98 231-328 19-116 (117)
6 KOG1745|consensus 100.0 1.1E-47 2.4E-52 352.1 8.3 136 446-581 1-137 (137)
7 smart00427 H2B Histone H2B. 100.0 6.7E-46 1.4E-50 319.5 4.9 89 240-328 1-89 (89)
8 PLN00153 histone H2A; Provisio 100.0 7.5E-44 1.6E-48 325.1 11.2 120 1-122 1-120 (129)
9 PLN00157 histone H2A; Provisio 100.0 2.8E-43 6.1E-48 322.4 11.7 120 1-122 1-122 (132)
10 KOG1744|consensus 100.0 1.4E-43 3.1E-48 321.2 8.8 124 201-330 4-127 (127)
11 PTZ00017 histone H2A; Provisio 100.0 8.7E-42 1.9E-46 313.5 11.4 121 1-123 1-124 (134)
12 PLN00156 histone H2AX; Provisi 100.0 1.6E-41 3.5E-46 312.7 10.5 116 6-123 11-126 (139)
13 PLN00160 histone H3; Provision 100.0 8.3E-42 1.8E-46 298.9 6.7 94 487-580 1-95 (97)
14 KOG1756|consensus 100.0 4.3E-41 9.4E-46 303.9 10.5 121 1-123 1-124 (131)
15 PTZ00252 histone H2A; Provisio 100.0 4.7E-41 1E-45 307.4 10.6 113 9-123 9-124 (134)
16 smart00428 H3 Histone H3. 100.0 1.8E-41 3.9E-46 300.9 7.3 101 480-580 2-104 (105)
17 PLN00154 histone H2A; Provisio 100.0 5.6E-40 1.2E-44 301.3 10.4 104 11-115 25-129 (136)
18 smart00414 H2A Histone 2A. 100.0 8.2E-39 1.8E-43 284.7 9.7 100 16-115 1-100 (106)
19 COG5262 HTA1 Histone H2A [Chro 100.0 1.3E-38 2.9E-43 284.1 9.2 112 4-115 4-117 (132)
20 cd00074 H2A Histone 2A; H2A is 100.0 3E-38 6.6E-43 284.7 10.8 108 8-115 4-111 (115)
21 KOG1757|consensus 100.0 7.1E-35 1.5E-39 258.5 3.9 105 12-117 18-123 (131)
22 PLN00155 histone H2A; Provisio 99.8 6.2E-22 1.3E-26 158.4 4.9 58 1-58 1-58 (58)
23 COG2036 HHT1 Histones H3 and H 99.8 7.9E-21 1.7E-25 165.4 5.5 87 489-580 1-87 (91)
24 PF00125 Histone: Core histone 99.6 8.3E-17 1.8E-21 133.3 4.4 75 503-577 1-75 (75)
25 PF00125 Histone: Core histone 99.2 2E-11 4.3E-16 101.2 4.8 73 18-90 2-75 (75)
26 cd07981 TAF12 TATA Binding Pro 98.7 1E-08 2.2E-13 85.9 4.9 58 518-575 8-65 (72)
27 COG5247 BUR6 Class 2 transcrip 98.6 6.5E-08 1.4E-12 86.0 6.3 77 24-100 23-99 (113)
28 PTZ00463 histone H2B; Provisio 98.3 1.3E-06 2.9E-11 79.5 5.8 65 509-577 26-94 (117)
29 PLN00158 histone H2B; Provisio 98.2 2.1E-06 4.6E-11 78.3 5.6 65 509-577 25-93 (116)
30 PLN00035 histone H4; Provision 98.1 3.5E-06 7.5E-11 75.7 5.3 86 1-89 1-93 (103)
31 KOG1659|consensus 98.1 7.2E-06 1.6E-10 81.4 6.4 74 24-97 13-86 (224)
32 smart00427 H2B Histone H2B. 98.0 6.9E-06 1.5E-10 72.0 4.7 62 512-577 2-67 (89)
33 PF00808 CBFD_NFYB_HMF: Histon 97.9 2.1E-05 4.5E-10 64.1 6.0 64 24-87 2-65 (65)
34 KOG1744|consensus 97.8 2.3E-05 4.9E-10 72.6 4.7 65 509-577 35-103 (127)
35 cd00076 H4 Histone H4, one of 97.6 5.9E-05 1.3E-09 65.7 3.6 68 507-579 13-80 (85)
36 PTZ00015 histone H4; Provision 97.4 0.00039 8.6E-09 62.5 7.0 85 1-88 1-93 (102)
37 PLN00035 histone H4; Provision 97.4 0.00012 2.6E-09 65.9 3.6 67 508-579 30-96 (103)
38 smart00803 TAF TATA box bindin 97.4 0.00017 3.7E-09 59.7 4.0 63 508-575 3-65 (65)
39 PTZ00015 histone H4; Provision 97.4 0.00014 3.1E-09 65.3 3.7 68 507-579 30-97 (102)
40 PF00808 CBFD_NFYB_HMF: Histon 97.3 0.00034 7.4E-09 56.9 4.5 63 511-574 3-65 (65)
41 cd07981 TAF12 TATA Binding Pro 97.2 0.00076 1.7E-08 56.7 6.1 59 247-305 8-66 (72)
42 cd07979 TAF9 TATA Binding Prot 97.1 0.00067 1.4E-08 62.2 4.9 66 513-579 3-68 (117)
43 smart00803 TAF TATA box bindin 96.9 0.0025 5.5E-08 52.8 6.2 64 24-88 2-65 (65)
44 COG2036 HHT1 Histones H3 and H 96.7 0.0016 3.4E-08 57.7 3.5 63 246-309 25-87 (91)
45 smart00417 H4 Histone H4. 96.6 0.0011 2.4E-08 56.5 1.7 62 506-572 12-73 (74)
46 KOG0870|consensus 96.4 0.0026 5.5E-08 61.6 3.6 70 504-575 7-76 (172)
47 PF15630 CENP-S: Kinetochore c 96.4 0.003 6.6E-08 54.0 3.5 64 512-575 6-71 (76)
48 PF03847 TFIID_20kDa: Transcri 96.0 0.011 2.4E-07 49.6 4.8 59 517-575 5-63 (68)
49 cd00076 H4 Histone H4, one of 96.0 0.018 3.8E-07 50.5 6.1 70 17-89 8-77 (85)
50 cd00074 H2A Histone 2A; H2A is 96.0 0.011 2.4E-07 54.4 5.0 59 246-304 26-84 (115)
51 PF03847 TFIID_20kDa: Transcri 95.7 0.022 4.8E-07 47.8 5.3 57 248-304 7-63 (68)
52 PF02969 TAF: TATA box binding 95.2 0.026 5.7E-07 47.2 4.2 59 516-575 8-66 (66)
53 smart00417 H4 Histone H4. 95.1 0.03 6.6E-07 47.9 4.4 64 19-85 10-73 (74)
54 PF02291 TFIID-31kDa: Transcri 94.8 0.042 9E-07 51.5 4.6 65 514-579 15-79 (129)
55 smart00576 BTP Bromodomain tra 94.6 0.064 1.4E-06 45.5 5.1 51 529-579 23-73 (77)
56 cd08050 TAF6 TATA Binding Prot 94.4 0.052 1.1E-06 58.0 4.9 64 515-579 3-66 (343)
57 KOG1657|consensus 93.9 0.053 1.2E-06 55.5 3.7 78 21-98 71-148 (236)
58 COG5208 HAP5 CCAAT-binding fac 93.7 0.15 3.3E-06 51.6 6.4 90 22-114 107-196 (286)
59 PF15511 CENP-T: Centromere ki 93.3 0.058 1.3E-06 59.1 2.9 54 516-569 356-414 (414)
60 KOG1142|consensus 93.2 0.059 1.3E-06 55.6 2.6 72 499-574 146-217 (258)
61 smart00428 H3 Histone H3. 93.1 0.087 1.9E-06 47.9 3.2 67 240-306 33-101 (105)
62 KOG0869|consensus 92.5 0.16 3.4E-06 49.2 4.2 80 246-325 38-126 (168)
63 cd08048 TAF11 TATA Binding Pro 91.7 0.68 1.5E-05 40.6 6.9 63 25-88 17-82 (85)
64 cd07979 TAF9 TATA Binding Prot 90.6 0.54 1.2E-05 43.3 5.5 62 246-308 7-68 (117)
65 PLN00156 histone H2AX; Provisi 88.9 0.45 9.8E-06 45.3 3.8 59 246-304 35-93 (139)
66 KOG1142|consensus 88.9 0.37 8E-06 50.0 3.4 70 245-314 159-232 (258)
67 KOG0871|consensus 88.3 0.61 1.3E-05 44.9 4.2 66 246-311 18-84 (156)
68 KOG3219|consensus 87.0 1 2.2E-05 45.2 5.0 66 23-89 111-177 (195)
69 PF02969 TAF: TATA box binding 86.9 1.9 4.2E-05 36.2 5.9 64 24-88 3-66 (66)
70 PF04719 TAFII28: hTAFII28-lik 85.1 1.4 3.1E-05 39.1 4.5 63 25-88 24-88 (90)
71 cd08050 TAF6 TATA Binding Prot 85.1 1.3 2.7E-05 47.6 5.0 50 40-89 14-63 (343)
72 smart00414 H2A Histone 2A. 84.7 0.96 2.1E-05 41.2 3.3 59 246-304 15-73 (106)
73 PLN00157 histone H2A; Provisio 84.7 0.77 1.7E-05 43.4 2.8 59 246-304 32-90 (132)
74 KOG3334|consensus 83.9 1.9 4E-05 41.5 5.0 66 514-580 16-81 (148)
75 PLN00153 histone H2A; Provisio 83.6 1.2 2.6E-05 42.0 3.5 59 246-304 30-88 (129)
76 PTZ00017 histone H2A; Provisio 83.4 1 2.2E-05 42.7 3.1 59 246-304 33-91 (134)
77 smart00576 BTP Bromodomain tra 78.0 6.9 0.00015 33.2 6.0 59 30-89 12-70 (77)
78 COG5262 HTA1 Histone H2A [Chro 77.9 2.2 4.7E-05 39.8 3.1 59 246-304 32-90 (132)
79 PF07524 Bromo_TP: Bromodomain 77.0 2.7 5.9E-05 35.3 3.3 53 526-578 19-72 (77)
80 KOG3467|consensus 76.4 6.5 0.00014 35.0 5.5 85 1-88 1-92 (103)
81 PTZ00252 histone H2A; Provisio 75.3 3.4 7.4E-05 39.3 3.8 59 246-304 31-91 (134)
82 PF15630 CENP-S: Kinetochore c 74.9 4.9 0.00011 34.6 4.3 51 254-304 21-71 (76)
83 PF09415 CENP-X: CENP-S associ 74.1 13 0.00027 31.8 6.5 61 26-86 1-64 (72)
84 PLN00154 histone H2A; Provisio 72.0 3.8 8.3E-05 39.1 3.2 59 246-304 44-103 (136)
85 PLN00121 histone H3; Provision 64.6 5.1 0.00011 38.2 2.5 64 242-305 68-131 (136)
86 KOG0870|consensus 63.9 11 0.00024 37.1 4.6 61 246-306 16-78 (172)
87 KOG1756|consensus 61.8 9.2 0.0002 36.2 3.5 59 246-304 33-91 (131)
88 PTZ00018 histone H3; Provision 60.1 6.8 0.00015 37.4 2.4 64 242-305 68-131 (136)
89 PF15510 CENP-W: Centromere ki 53.4 8.9 0.00019 34.5 1.9 42 265-308 57-98 (102)
90 KOG0871|consensus 53.2 41 0.00089 32.8 6.4 69 20-89 8-78 (156)
91 PF15511 CENP-T: Centromere ki 51.1 20 0.00042 39.7 4.5 44 255-298 371-414 (414)
92 PF02269 TFIID-18kDa: Transcri 43.6 15 0.00031 32.6 1.7 63 513-575 3-65 (93)
93 KOG3467|consensus 43.6 24 0.00053 31.5 3.0 50 529-578 46-95 (103)
94 PF02861 Clp_N: Clp amino term 43.4 19 0.0004 27.2 2.1 34 66-99 1-36 (53)
95 KOG2549|consensus 42.3 48 0.001 38.3 5.8 48 259-306 29-76 (576)
96 PLN00161 histone H3; Provision 42.0 24 0.00052 33.7 3.0 51 256-306 76-126 (135)
97 PLN00160 histone H3; Provision 41.7 51 0.0011 29.9 4.9 50 256-305 42-91 (97)
98 PLN00163 histone H4; Provision 40.0 12 0.00027 31.0 0.6 42 1-45 1-49 (59)
99 KOG0869|consensus 39.9 40 0.00087 33.1 4.2 67 506-575 31-97 (168)
100 PF07524 Bromo_TP: Bromodomain 39.5 97 0.0021 26.0 6.0 48 257-304 22-69 (77)
101 cd08045 TAF4 TATA Binding Prot 39.4 32 0.0007 34.4 3.6 57 505-562 42-98 (212)
102 cd07978 TAF13 The TATA Binding 39.0 73 0.0016 28.4 5.4 37 56-92 31-69 (92)
103 PF15214 PXT1: Peroxisomal tes 38.1 15 0.00033 29.4 0.9 17 137-153 5-21 (51)
104 PF05236 TAF4: Transcription i 35.7 21 0.00046 36.8 1.7 58 505-563 41-98 (264)
105 PF02269 TFIID-18kDa: Transcri 33.2 48 0.001 29.4 3.3 47 258-304 19-65 (93)
106 COG5095 TAF6 Transcription ini 30.6 52 0.0011 35.8 3.6 66 241-306 2-70 (450)
107 KOG1658|consensus 29.6 31 0.00068 33.8 1.6 64 508-573 57-121 (162)
108 PF08366 LLGL: LLGL2; InterPr 28.9 15 0.00032 33.7 -0.7 75 318-396 11-89 (105)
109 KOG2549|consensus 28.3 53 0.0012 38.0 3.4 62 516-578 16-77 (576)
110 COG5150 Class 2 transcription 27.7 1E+02 0.0022 29.5 4.5 40 49-89 38-77 (148)
111 cd07978 TAF13 The TATA Binding 25.1 1.8E+02 0.004 25.8 5.6 45 259-304 21-65 (92)
112 cd08048 TAF11 TATA Binding Pro 23.4 1.4E+02 0.0031 26.2 4.5 56 250-306 26-84 (85)
113 PF02291 TFIID-31kDa: Transcri 22.9 2.1E+02 0.0044 27.2 5.7 52 256-307 24-78 (129)
114 COG5094 TAF9 Transcription ini 22.8 1.1E+02 0.0025 29.1 3.9 45 533-577 35-82 (145)
115 PF10911 DUF2717: Protein of u 20.6 84 0.0018 27.5 2.4 60 494-556 2-64 (77)
No 1
>PTZ00018 histone H3; Provisional
Probab=100.00 E-value=1.2e-49 Score=366.37 Aligned_cols=135 Identities=96% Similarity=1.342 Sum_probs=130.5
Q ss_pred CccccccccCCCCCCCCccchhhhhhcccCCCCCCCCCCccCCCCcchhhhhhhcccchhhhhccCchhHHHHHHHhhcc
Q psy3827 446 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 525 (581)
Q Consensus 446 MARtKqtArkstggkaPrK~la~k~arks~p~~~~~kk~~r~rpgt~alrEIR~yQkst~lLI~K~pF~RLVrEI~~~~~ 525 (581)
|||||+++++++|+++|+++.++++.+++.+..++.++++||+||++||+|||+||+||+|||||+||+||||||+++|.
T Consensus 1 MaRtk~~~~k~~~~~~prk~~~~~~~~~~~~~~~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~ 80 (136)
T PTZ00018 1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVTGGIKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
T ss_pred CCCCCcCccCCCCCCCCcccccccccccCCCCCCCCCCCcccCCchhHHHHHHHHcccchhccccccHHHHHHHHHHHcC
Confidence 99999999999999999999988888887777788899999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhccC
Q psy3827 526 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 580 (581)
Q Consensus 526 ~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~~ 580 (581)
+++|||++||+|||||+|+|||+||||+|+||+||||||||+|||||++||||++
T Consensus 81 ~~~rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~~ 135 (136)
T PTZ00018 81 TDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135 (136)
T ss_pred CcceeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHHHhcccC
Confidence 9999999999999999999999999999999999999999999999999999986
No 2
>PLN00121 histone H3; Provisional
Probab=100.00 E-value=1.7e-49 Score=365.47 Aligned_cols=136 Identities=98% Similarity=1.342 Sum_probs=131.3
Q ss_pred CccccccccCCCCCCCCccchhhhhhcccCCCCCCCCCCccCCCCcchhhhhhhcccchhhhhccCchhHHHHHHHhhcc
Q psy3827 446 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 525 (581)
Q Consensus 446 MARtKqtArkstggkaPrK~la~k~arks~p~~~~~kk~~r~rpgt~alrEIR~yQkst~lLI~K~pF~RLVrEI~~~~~ 525 (581)
|||||+++++++++++|+++.++++.+++.+..++.++++||+||++||+|||+||+||+|||||+||+||||||++++.
T Consensus 1 MaRtk~~~~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~ 80 (136)
T PLN00121 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
T ss_pred CCCCCcCccCCCCCCCCcccccccccccCCCCCCCCCCCcccCchhHHHHHHHHhccccccccccccHHHHHHHHHHHhC
Confidence 99999999999999999999988888888777788899999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhccCC
Q psy3827 526 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 581 (581)
Q Consensus 526 ~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~~~ 581 (581)
+++|||++||+|||||+|+|||+||||+|+||+||||||||+|||+|++||||+++
T Consensus 81 ~~~Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~~~ 136 (136)
T PLN00121 81 TDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136 (136)
T ss_pred ccceeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHHHHHHhccccC
Confidence 99999999999999999999999999999999999999999999999999999863
No 3
>PLN00158 histone H2B; Provisional
Probab=100.00 E-value=9.4e-50 Score=356.52 Aligned_cols=114 Identities=72% Similarity=1.015 Sum_probs=104.8
Q ss_pred CCCCcchhhhhhcccccccccccccccccccceeEeeeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy3827 210 GKSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYN 289 (581)
Q Consensus 210 ~k~~~k~~~ka~k~~~~~~~~~kk~k~~r~esy~~YiykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~n 289 (581)
+..++|+++|+.+ +++||++++|+|+|++||||||||||||+|||++||+||||||||||||||.||++|++||
T Consensus 3 ~~~~~k~~~~~~~------~~~kk~~~kr~esy~~YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~n 76 (116)
T PLN00158 3 KTPSKKPAKKAAK------GAKKKGSKSKTETYKIYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYN 76 (116)
T ss_pred CCcchhhhhhccc------cccccccccccccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3345666666655 4466778888999999999999999999999999999999999999999999999999999
Q ss_pred CCcccchhHHHHHHHhhCchHHhhhhhhhhcchhhccccc
Q psy3827 290 KRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 329 (581)
Q Consensus 290 kr~TitsreIqtAvrLlLPgeLaKhAvseGtkAVtky~ss 329 (581)
+|+|||+|||||||||+|||||+||||+||||||+||+++
T Consensus 77 kr~TltsrEIqtAvrLvLpgELaKhAvsEGtkAv~k~~~~ 116 (116)
T PLN00158 77 KKPTVTSREIQTAVRLILPGELAKHAVSEGTKAVTKFTSA 116 (116)
T ss_pred CCCcCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999975
No 4
>PLN00161 histone H3; Provisional
Probab=100.00 E-value=3e-48 Score=355.69 Aligned_cols=128 Identities=65% Similarity=0.959 Sum_probs=118.5
Q ss_pred CccccccccCCCCCCCCccchhhhhhcccCCCCCCCCCCccCCCCcchhhhhhhcccchhhhhccCchhHHHHHHHhhcc
Q psy3827 446 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 525 (581)
Q Consensus 446 MARtKqtArkstggkaPrK~la~k~arks~p~~~~~kk~~r~rpgt~alrEIR~yQkst~lLI~K~pF~RLVrEI~~~~~ 525 (581)
||||||+ +++++++.|+|.+..+ ...++.++++|||||++||+|||+||+||+|||||+||+||||||++++.
T Consensus 1 mar~k~~-~~~~~~~~~~~~~~~~------~~~~~~kk~~r~rpGtvaLrEIR~yQkst~lLIpklPF~RLVREI~~~~~ 73 (135)
T PLN00161 1 MARRLQG-KRFRKGKKPQKEASGV------TRQELDKKPHRYRPGTVALREIRKYQKSTELLIRKLPFARLVREISNEML 73 (135)
T ss_pred CCccccc-ccccCCCCCcccCCCC------CCCCCCCCCccCCCcchHHHHHHHHccccccccccccHHHHHHHHHHhcC
Confidence 9999999 7778888898876553 23456789999999999999999999999999999999999999999996
Q ss_pred -ccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhccC
Q psy3827 526 -TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 580 (581)
Q Consensus 526 -~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~~ 580 (581)
+++|||++||+|||||+|+|||+||||+|+||+||||||||+|||+||+||||+.
T Consensus 74 ~~~~Rfq~~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~kDm~La~rirg~~ 129 (135)
T PLN00161 74 REPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQLARRIRGPI 129 (135)
T ss_pred CCCcEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcccc
Confidence 5899999999999999999999999999999999999999999999999999975
No 5
>PTZ00463 histone H2B; Provisional
Probab=100.00 E-value=2.3e-48 Score=347.40 Aligned_cols=98 Identities=70% Similarity=1.067 Sum_probs=94.6
Q ss_pred ccccccccccceeEeeeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHhhCchH
Q psy3827 231 DKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE 310 (581)
Q Consensus 231 ~kk~k~~r~esy~~YiykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLPge 310 (581)
++|++++++|+|++||||||||||||+|||++||+||||||||||||||.||++|++||+++|||+|||||||||+||||
T Consensus 19 ~kk~~~kr~esy~~YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrLlLpGE 98 (117)
T PTZ00463 19 KKKRKKSRYDSYGLYIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLVLPGE 98 (117)
T ss_pred cccccccccchHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhhcccHH
Confidence 45667778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhhhhcchhhcccc
Q psy3827 311 LAKHAVSEGTKAVTKYTS 328 (581)
Q Consensus 311 LaKhAvseGtkAVtky~s 328 (581)
|+||||+||||||+||++
T Consensus 99 LaKhAvsEGtkAv~k~~~ 116 (117)
T PTZ00463 99 LAKHAVSEGTKAVTKFTS 116 (117)
T ss_pred HHHhhhhHHHHHHHHhhc
Confidence 999999999999999986
No 6
>KOG1745|consensus
Probab=100.00 E-value=1.1e-47 Score=352.09 Aligned_cols=136 Identities=94% Similarity=1.296 Sum_probs=129.7
Q ss_pred CccccccccCCCCCCCCccchhhhhhccc-CCCCCCCCCCccCCCCcchhhhhhhcccchhhhhccCchhHHHHHHHhhc
Q psy3827 446 MARTKQTARKSTGGKAPRKQLATKAARKS-APATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF 524 (581)
Q Consensus 446 MARtKqtArkstggkaPrK~la~k~arks-~p~~~~~kk~~r~rpgt~alrEIR~yQkst~lLI~K~pF~RLVrEI~~~~ 524 (581)
|+|++++++++.++++|++..+.+..++. .|..+..++++||+||+++++|||+|||+|+|||+|+||+||||||+++|
T Consensus 1 m~r~~~t~~k~~~~~~~r~~~a~~~~~~~~~~~~~~~~k~~r~rpg~~al~eirkyQkstdLlI~K~PFqRlvrei~q~f 80 (137)
T KOG1745|consen 1 MARTKQTARKSTGGKAPRKQLAGKAARKSAAPRTGRVKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDF 80 (137)
T ss_pred CCCCCcccccccCCCCCccccccccccccccccccccCccccccCchHHHHHHHHHHhhhHHHhhcCcHHHHhHHHHhcc
Confidence 89999999999999999999999988876 34456778999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhccCC
Q psy3827 525 KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 581 (581)
Q Consensus 525 ~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~~~ 581 (581)
.+|+|||+.||.|||||+|+|||+||||+|+||+|||||||||||||||+||||++.
T Consensus 81 ~~dLrfqs~Ai~ALQeA~EayLv~LfEdtnlcAihAkRVTimpkdiQlArrirg~~~ 137 (137)
T KOG1745|consen 81 KTDLRFQSSAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 137 (137)
T ss_pred cccceehHHHHHHHHHHHHHHHHHhccccchhhhccceeEecccceehhhhcccCCC
Confidence 999999999999999999999999999999999999999999999999999999874
No 7
>smart00427 H2B Histone H2B.
Probab=100.00 E-value=6.7e-46 Score=319.53 Aligned_cols=89 Identities=89% Similarity=1.240 Sum_probs=87.8
Q ss_pred cceeEeeeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHhhCchHHhhhhhhhh
Q psy3827 240 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEG 319 (581)
Q Consensus 240 esy~~YiykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLPgeLaKhAvseG 319 (581)
|+|++||||||||||||+|||++||+||||||||||||||.||++|++||||+|||+|||||||||+|||||+||||+||
T Consensus 1 esy~~Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~LpgeLakhAvsEg 80 (89)
T smart00427 1 ETYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLILPGELAKHAVSEG 80 (89)
T ss_pred CcHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHccHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhcccc
Q psy3827 320 TKAVTKYTS 328 (581)
Q Consensus 320 tkAVtky~s 328 (581)
||||+||++
T Consensus 81 tkAv~k~~~ 89 (89)
T smart00427 81 TKAVTKYSS 89 (89)
T ss_pred HHHHHhhcC
Confidence 999999985
No 8
>PLN00153 histone H2A; Provisional
Probab=100.00 E-value=7.5e-44 Score=325.09 Aligned_cols=120 Identities=73% Similarity=1.104 Sum_probs=114.0
Q ss_pred CCCCCCCCCCCCCCCCCCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccch
Q psy3827 1 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIP 80 (581)
Q Consensus 1 Msg~gk~gk~~~k~~SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP 80 (581)
|||+||+++.++++.|||+|||||||||||||+|++++|++||+++||||||||||||++||||||+|+|++++++||+|
T Consensus 1 m~g~~~~~~~~~k~~srS~ragL~FpVgRi~R~Lr~g~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItP 80 (129)
T PLN00153 1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVP 80 (129)
T ss_pred CCCCCCCCccccCccCcccccCcccchHHHHHHHhcCchhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCh
Confidence 99999977767788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhccHHHHhhhcCceecCCCcCCccccccccccccc
Q psy3827 81 RHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGAALTFERV 122 (581)
Q Consensus 81 ~hL~lAI~nDeEL~~Lf~~vtIa~GGVlP~Iv~~a~L~~ekv 122 (581)
+||++||+||+||++||++|||++|||+|+||+. |.+++.
T Consensus 81 rHi~lAI~nDeEL~~Ll~~vTIa~GGV~P~i~~~--l~~kk~ 120 (129)
T PLN00153 81 RHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAV--LLPKKT 120 (129)
T ss_pred HHHHhhccCcHHHHHHHCCCccCCCccCCCcchh--hcCccc
Confidence 9999999999999999999999999999999997 444444
No 9
>PLN00157 histone H2A; Provisional
Probab=100.00 E-value=2.8e-43 Score=322.40 Aligned_cols=120 Identities=74% Similarity=1.129 Sum_probs=113.5
Q ss_pred CCCCCC--CCCCCCCCCCCCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCccc
Q psy3827 1 MSGRGK--GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRI 78 (581)
Q Consensus 1 Msg~gk--~gk~~~k~~SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrI 78 (581)
|||+|| ++++++++.|||+|||||||||||||+|++++|++||+++||||||||||||++||||||+|+|++++++||
T Consensus 1 ms~~g~~~~~~~~~k~~srS~ragL~FPVgRi~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RI 80 (132)
T PLN00157 1 MSGRGKRKGGGGGKKATSRSAKAGLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRI 80 (132)
T ss_pred CCCCCCCCCCccCcCCcCcccccCcccchHHHHHHHhcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 999987 556677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHhccHHHHhhhcCceecCCCcCCccccccccccccc
Q psy3827 79 IPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGAALTFERV 122 (581)
Q Consensus 79 tP~hL~lAI~nDeEL~~Lf~~vtIa~GGVlP~Iv~~a~L~~ekv 122 (581)
+|+||++||+||+||++||++|||++|||+|+||+. |.+.+.
T Consensus 81 tPrHi~lAI~nDeEL~~Ll~~vtIa~GGV~P~i~~~--ll~kk~ 122 (132)
T PLN00157 81 VPRHIQLAVRNDEELSKLLGGVTIAAGGVLPNIHSV--LLPKKS 122 (132)
T ss_pred cHHHHhhcccCcHHHHHHHcCceecCCccCCCcchh--hcCCCC
Confidence 999999999999999999999999999999999997 445544
No 10
>KOG1744|consensus
Probab=100.00 E-value=1.4e-43 Score=321.15 Aligned_cols=124 Identities=75% Similarity=0.997 Sum_probs=111.7
Q ss_pred cccccccccCCCCcchhhhhhcccccccccccccccccccceeEeeeeecccccCCCCcchhhHHHHHHHHHHHHHHHHH
Q psy3827 201 SLSSLTTAAGKSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAA 280 (581)
Q Consensus 201 ~~~s~s~~~~k~~~k~~~ka~k~~~~~~~~~kk~k~~r~esy~~YiykVLKQVhpd~gISskam~imnsfvnDiferIA~ 280 (581)
+.+...++++++..++.+|+++ +++|++..++.|+|+.||||||||||||+|||++||+|||||+||||||||.
T Consensus 4 ~~~~~~~~~~~~~~~~~~k~~k------k~gk~~~~~~~e~~s~yv~kvlk~Vhpd~gis~~a~~vmnsf~ndife~iA~ 77 (127)
T KOG1744|consen 4 PATKKAPGSKKFLPKAFKKAQK------KAGKKRSTRRKESYSEYVYKVLKQVHPDLGISSKAMGVMNSFVNDIFERIAS 77 (127)
T ss_pred cccccCCcccccccchhccccc------cccccCcccccCceeeehhhhhhcccCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666655 5668888999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccCCcccchhHHHHHHHhhCchHHhhhhhhhhcchhhcccccc
Q psy3827 281 ESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 330 (581)
Q Consensus 281 EAs~La~~nkr~TitsreIqtAvrLlLPgeLaKhAvseGtkAVtky~ssk 330 (581)
||++|++||+|+||+||||||||||+|||||+|||++||||||++|++++
T Consensus 78 ea~rla~y~krstisSreiqta~rLllPgel~khA~seGtkav~ky~~sk 127 (127)
T KOG1744|consen 78 EAGRLAHYNKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 127 (127)
T ss_pred HHhhhhhhcCCCcccHHHHHHHHHHhCchHHhhhhhcccchhheeeccCC
Confidence 99999999999999999999999999999999999999999999999875
No 11
>PTZ00017 histone H2A; Provisional
Probab=100.00 E-value=8.7e-42 Score=313.52 Aligned_cols=121 Identities=72% Similarity=1.089 Sum_probs=111.4
Q ss_pred CCCCCCCC-CC--CCCCCCCCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcc
Q psy3827 1 MSGRGKGG-KA--KAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTR 77 (581)
Q Consensus 1 Msg~gk~g-k~--~~k~~SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkr 77 (581)
|||+|+.| ++ ++++.|||+|||||||||||||+|++++|++||+++||||||||||||++||||||+|+|++++++|
T Consensus 1 ~~~~~~~~~~~~~~~k~~srS~ragL~FPVgRi~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~R 80 (134)
T PTZ00017 1 KGGKGKTGGGKAGKKKPVSRSAKAGLQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKR 80 (134)
T ss_pred CCCCCcCCCCcccCcCcccccccCCcccchHHHHHHHhccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 78887543 23 5578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHhccHHHHhhhcCceecCCCcCCcccccccccccccc
Q psy3827 78 IIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGAALTFERVD 123 (581)
Q Consensus 78 ItP~hL~lAI~nDeEL~~Lf~~vtIa~GGVlP~Iv~~a~L~~ekv~ 123 (581)
|+|+||++||+||+||++||+++||++|||+|+||+. |++++..
T Consensus 81 ItPrHi~lAI~nDeEL~~Ll~~vtIa~GGV~P~i~~~--l~~k~~~ 124 (134)
T PTZ00017 81 ITPRHIQLAIRNDEELNKLLAGVTIASGGVLPNIHKV--LLPKKSK 124 (134)
T ss_pred ecHHHHHhhccCcHHHHHHHcCCcccCCccCCCccHh--hccCCCC
Confidence 9999999999999999999999999999999999997 5555554
No 12
>PLN00156 histone H2AX; Provisional
Probab=100.00 E-value=1.6e-41 Score=312.74 Aligned_cols=116 Identities=72% Similarity=1.087 Sum_probs=108.4
Q ss_pred CCCCCCCCCCCCCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHH
Q psy3827 6 KGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 85 (581)
Q Consensus 6 k~gk~~~k~~SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~l 85 (581)
+++++++++.|||+|||||||||||||+|++++|+.||+++||||||||||||++||||||+|+|++++++||+|+||++
T Consensus 11 ~g~~~~~k~~srS~rAgL~FPVgRi~R~Lk~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~l 90 (139)
T PLN00156 11 RGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQL 90 (139)
T ss_pred CCcccccCCcCcccccCcccchHHHHHHHhcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHh
Confidence 44555668899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccHHHHhhhcCceecCCCcCCcccccccccccccc
Q psy3827 86 AIRNDEELNKLLSGVTIAQGGVLPNIQAGAALTFERVD 123 (581)
Q Consensus 86 AI~nDeEL~~Lf~~vtIa~GGVlP~Iv~~a~L~~ekv~ 123 (581)
||+||+||+.||++|||++|||+|+||+. |.+++..
T Consensus 91 AIrnDeEL~~Ll~~vTIa~GGV~P~i~~~--l~~kk~~ 126 (139)
T PLN00156 91 AVRNDEELSKLLGSVTIAAGGVLPNIHQT--LLPKKVG 126 (139)
T ss_pred hccCcHHHHHHHCCCccCCCccCCCccHh--hcccccc
Confidence 99999999999999999999999999997 4555543
No 13
>PLN00160 histone H3; Provisional
Probab=100.00 E-value=8.3e-42 Score=298.86 Aligned_cols=94 Identities=70% Similarity=1.080 Sum_probs=91.3
Q ss_pred CCCCcchhhhhhhcccchhhhhccCchhHHHHHHHhhcc-ccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeee
Q psy3827 487 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 565 (581)
Q Consensus 487 ~rpgt~alrEIR~yQkst~lLI~K~pF~RLVrEI~~~~~-~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI 565 (581)
||||++||+|||+||+||+|||||+||+||||||++++. .++|||++||.|||||+|+|||++|||+|+||+|||||||
T Consensus 1 ~rpGt~aLrEIR~yQkst~lLI~k~pF~RLVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl 80 (97)
T PLN00160 1 MRPGEKALKEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTI 80 (97)
T ss_pred CCCccHHHHHHHHHccchhhhhccccHHHHHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccc
Confidence 689999999999999999999999999999999999986 5699999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHhccC
Q psy3827 566 MPKDIQLARRIRGER 580 (581)
Q Consensus 566 ~~kDiqLa~rIrg~~ 580 (581)
|+||||||+||||+.
T Consensus 81 ~~kD~~L~~rirg~~ 95 (97)
T PLN00160 81 MPKDMQLARRIRGQT 95 (97)
T ss_pred chhhHHHHHHhhccc
Confidence 999999999999984
No 14
>KOG1756|consensus
Probab=100.00 E-value=4.3e-41 Score=303.94 Aligned_cols=121 Identities=83% Similarity=1.188 Sum_probs=112.4
Q ss_pred CCCCCCCCCCC---CCCCCCCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcc
Q psy3827 1 MSGRGKGGKAK---AKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTR 77 (581)
Q Consensus 1 Msg~gk~gk~~---~k~~SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkr 77 (581)
|||++|+||.+ +++.|+|+|+|||||||||+|+||+++|++||+++|||||+||||||++||||+|+|+|+++++.|
T Consensus 1 ~s~~~k~gk~~~~~~~~~srs~~agl~fPvgri~r~Lr~~~~~~ri~~gapV~laavLeYL~Aeile~agnaardnkk~r 80 (131)
T KOG1756|consen 1 MSGRGKGGKAKPRAKAKSSRSSRAGLQFPVGRIHRLLRKGRYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR 80 (131)
T ss_pred CCccCCCCcccchhhhhcchhhhcccccCHHHHHHHHHccchhhhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccc
Confidence 89999888764 346688999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHhccHHHHhhhcCceecCCCcCCcccccccccccccc
Q psy3827 78 IIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGAALTFERVD 123 (581)
Q Consensus 78 ItP~hL~lAI~nDeEL~~Lf~~vtIa~GGVlP~Iv~~a~L~~ekv~ 123 (581)
|+|+||++||+||+||++|+++|||++|||+|+|++. |++.+..
T Consensus 81 i~PrH~~lAI~NDeEL~~lL~~vtIa~GGvlPnI~~~--lLpKk~~ 124 (131)
T KOG1756|consen 81 ITPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAI--LLPKKTG 124 (131)
T ss_pred cChHHHHHHHhCcHHHHHHhccceeccCCcccccchh--hcccccc
Confidence 9999999999999999999999999999999999998 4444443
No 15
>PTZ00252 histone H2A; Provisional
Probab=100.00 E-value=4.7e-41 Score=307.43 Aligned_cols=113 Identities=49% Similarity=0.839 Sum_probs=103.2
Q ss_pred CCCCCCCC-CCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhh--hCCcccchhhHHH
Q psy3827 9 KAKAKSKT-RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD--NKKTRIIPRHLQL 85 (581)
Q Consensus 9 k~~~k~~S-rSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~--~kkkrItP~hL~l 85 (581)
|+.++..+ ||+|||||||||||||+|++|+|++||+++||||||||||||++||||||||+|++ ++++||+|+||++
T Consensus 9 ~~~~~~~~~rS~rAGL~FPVgRi~R~Lr~g~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi~l 88 (134)
T PTZ00252 9 KKASKSGSGRSAKAGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTVTL 88 (134)
T ss_pred hcccccccccccccCccCchHHHHHHHHcCCcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHh
Confidence 33344566 99999999999999999999999999999999999999999999999999999976 7889999999999
Q ss_pred HHhccHHHHhhhcCceecCCCcCCcccccccccccccc
Q psy3827 86 AIRNDEELNKLLSGVTIAQGGVLPNIQAGAALTFERVD 123 (581)
Q Consensus 86 AI~nDeEL~~Lf~~vtIa~GGVlP~Iv~~a~L~~ekv~ 123 (581)
||+||+||++||+++||++|||+|+||+. |.+++.+
T Consensus 89 AIrNDeEL~~Ll~~vTIa~GGVlP~i~~~--l~~k~~~ 124 (134)
T PTZ00252 89 AVRHDDDLGSLLKNVTLSRGGVMPSLNKA--LAKKHKS 124 (134)
T ss_pred hccChHHHHHHHcCCccCCCccCCCccHh--hcccccc
Confidence 99999999999999999999999999997 4444343
No 16
>smart00428 H3 Histone H3.
Probab=100.00 E-value=1.8e-41 Score=300.93 Aligned_cols=101 Identities=87% Similarity=1.230 Sum_probs=98.2
Q ss_pred CCCCCccCCCCcchhhhhhhcccchhhhhccCchhHHHHHHHhhccc--cccccHHHHHHHHHHHHhhhhccchhhhhhh
Q psy3827 480 GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT--DLRFQSSAVMALQEASEAYLVGLFEDTNLCA 557 (581)
Q Consensus 480 ~~kk~~r~rpgt~alrEIR~yQkst~lLI~K~pF~RLVrEI~~~~~~--~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA 557 (581)
+.++++|||||++||+|||+||+||+|||||+||+||||||++++.+ ++|||++|+.|||||+|+|||++|||+|+||
T Consensus 2 ~~~~~~r~rpg~~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a 81 (105)
T smart00428 2 GKTKHRRYRPGQVALREIRKYQKSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLA 81 (105)
T ss_pred CCCCCcCCCCcchHHHHHHHHccCcccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999987 9999999999999999999999999999999
Q ss_pred hcCCeeeeCcccHHHHHHHhccC
Q psy3827 558 IHAKRVTIMPKDIQLARRIRGER 580 (581)
Q Consensus 558 ~HaKRVTI~~kDiqLa~rIrg~~ 580 (581)
+||||||||++||+||.||||++
T Consensus 82 ~HAkRvTl~~kDi~La~rir~~~ 104 (105)
T smart00428 82 IHAKRVTIMPKDIQLARRIRGER 104 (105)
T ss_pred HHhCCccCcHhhHHHHHHHhccC
Confidence 99999999999999999999985
No 17
>PLN00154 histone H2A; Provisional
Probab=100.00 E-value=5.6e-40 Score=301.33 Aligned_cols=104 Identities=64% Similarity=0.930 Sum_probs=99.8
Q ss_pred CCCCCCCCcccCcccchhHHHHHHhcCC-cccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhc
Q psy3827 11 KAKSKTRSSRAGLQFPVGRIHRLLRKGN-YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (581)
Q Consensus 11 ~~k~~SrSsRAgLqFPVgRI~RlLk~~~-ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~n 89 (581)
+++..|||+|||||||||||||+||+++ |++||+++||||||||||||++||||||||+|++++++||+|+||++||+|
T Consensus 25 ~~k~~srS~rAgL~FPVgRi~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIrn 104 (136)
T PLN00154 25 KKKPTSRSSRAGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
T ss_pred CcCCcCcccccCccCchHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhccC
Confidence 4578999999999999999999999997 578999999999999999999999999999999999999999999999999
Q ss_pred cHHHHhhhcCceecCCCcCCcccccc
Q psy3827 90 DEELNKLLSGVTIAQGGVLPNIQAGA 115 (581)
Q Consensus 90 DeEL~~Lf~~vtIa~GGVlP~Iv~~a 115 (581)
|+||++||+ +||++|||+|+||+..
T Consensus 105 DeEL~~Ll~-~TIa~GGVlP~i~~~l 129 (136)
T PLN00154 105 DEELDTLIK-GTIAGGGVIPHIHKSL 129 (136)
T ss_pred cHHHHHHhc-CCccCCccCCCcchhh
Confidence 999999998 6999999999999974
No 18
>smart00414 H2A Histone 2A.
Probab=100.00 E-value=8.2e-39 Score=284.72 Aligned_cols=100 Identities=87% Similarity=1.262 Sum_probs=98.1
Q ss_pred CCCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhccHHHHh
Q psy3827 16 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNK 95 (581)
Q Consensus 16 SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~nDeEL~~ 95 (581)
|||+|||||||||||||+|++++|++||+++||||||||||||++||||||+|+|++++++||+|+||++||+||+||++
T Consensus 1 srS~ragL~fPVgRi~r~Lk~~~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~nD~EL~~ 80 (106)
T smart00414 1 SRSARAGLQFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRNDEELNK 80 (106)
T ss_pred CccccCCccCchHHHHHHHHcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhccCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCceecCCCcCCcccccc
Q psy3827 96 LLSGVTIAQGGVLPNIQAGA 115 (581)
Q Consensus 96 Lf~~vtIa~GGVlP~Iv~~a 115 (581)
||+++||++|||+|+||+..
T Consensus 81 L~~~vti~~ggv~p~i~~~l 100 (106)
T smart00414 81 LLKGVTIAQGGVLPNIHKVL 100 (106)
T ss_pred HHcCcccCCCccCCCcchhh
Confidence 99999999999999999973
No 19
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-38 Score=284.11 Aligned_cols=112 Identities=80% Similarity=1.200 Sum_probs=105.8
Q ss_pred CCCCCCC-CC-CCCCCCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchh
Q psy3827 4 RGKGGKA-KA-KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 81 (581)
Q Consensus 4 ~gk~gk~-~~-k~~SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~ 81 (581)
+|||||. .. -..|+|.++||+||||||+|+||+++|.+||+++||||++||||||++||||||+|+|++++++||+|+
T Consensus 4 ~GKGgK~a~~r~~~s~sa~agl~fpvgrvkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~Pr 83 (132)
T COG5262 4 GGKGGKAADARVSQSRSAKAGLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPR 83 (132)
T ss_pred CCcCcccccchhccchhhhcCccccHHHHHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechH
Confidence 3788883 22 356899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhccHHHHhhhcCceecCCCcCCcccccc
Q psy3827 82 HLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGA 115 (581)
Q Consensus 82 hL~lAI~nDeEL~~Lf~~vtIa~GGVlP~Iv~~a 115 (581)
||++|||||+||+.|+++|||++|||+|||+++.
T Consensus 84 HlqlAIrnD~EL~~l~~~~tIa~GGvlp~I~~~l 117 (132)
T COG5262 84 HLQLAIRNDEELNKLLGDVTIAQGGVLPNINPGL 117 (132)
T ss_pred HHHHHhcCcHHHHHHhhhheeecCCcccccChhh
Confidence 9999999999999999999999999999999985
No 20
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=100.00 E-value=3e-38 Score=284.67 Aligned_cols=108 Identities=81% Similarity=1.208 Sum_probs=104.8
Q ss_pred CCCCCCCCCCCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHH
Q psy3827 8 GKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAI 87 (581)
Q Consensus 8 gk~~~k~~SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI 87 (581)
||.+++++|||+||||+|||+||+|+|++++|++||+++|+|||+||||||++||||||+|.|+++++++|+|+||++||
T Consensus 4 ~k~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi 83 (115)
T cd00074 4 GKKKSKKRSRSARAGLQFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAV 83 (115)
T ss_pred CccCcCccccccccCccCcHHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHH
Confidence 47777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHHhhhcCceecCCCcCCcccccc
Q psy3827 88 RNDEELNKLLSGVTIAQGGVLPNIQAGA 115 (581)
Q Consensus 88 ~nDeEL~~Lf~~vtIa~GGVlP~Iv~~a 115 (581)
+||+||++||+++||++|||+|+||++.
T Consensus 84 ~nD~EL~~L~~~vtI~~ggv~p~i~~~l 111 (115)
T cd00074 84 RNDEELNKLLKGVTIASGGVLPNIHKVL 111 (115)
T ss_pred hccHHHHHHHcCCcccCCccCCCcchhh
Confidence 9999999999999999999999999974
No 21
>KOG1757|consensus
Probab=100.00 E-value=7.1e-35 Score=258.51 Aligned_cols=105 Identities=63% Similarity=0.914 Sum_probs=98.7
Q ss_pred CCCCCCCcccCcccchhHHHHHHhcCCc-ccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhcc
Q psy3827 12 AKSKTRSSRAGLQFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 90 (581)
Q Consensus 12 ~k~~SrSsRAgLqFPVgRI~RlLk~~~y-a~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~nD 90 (581)
.+..|+|+|+||||||+||||+|+.... ..||++.+.||++|+|||||+||||||||++++.+.+||||+|+|+||+.|
T Consensus 18 ~k~vs~s~raGlqFpVgRihr~LK~r~t~h~rVGataavy~aaileYLTaEVLeLAgNasKdLKvKRitprHlqLAiRGD 97 (131)
T KOG1757|consen 18 AKAVSRSARAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGD 97 (131)
T ss_pred hhhhhHHHhcccccchHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHcccccccceeeeccchhheeeecCc
Confidence 4677999999999999999999998765 579999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCceecCCCcCCcccccccc
Q psy3827 91 EELNKLLSGVTIAQGGVLPNIQAGAAL 117 (581)
Q Consensus 91 eEL~~Lf~~vtIa~GGVlP~Iv~~a~L 117 (581)
|||+.|++. ||++|||+||||+..-.
T Consensus 98 eELDtLIk~-TiagGgViPhihk~l~~ 123 (131)
T KOG1757|consen 98 EELDTLIKA-TIAGGGVIPHIHKSLIN 123 (131)
T ss_pred HHHHHHHHH-hhccCccccchHHHHhc
Confidence 999999985 89999999999998533
No 22
>PLN00155 histone H2A; Provisional
Probab=99.85 E-value=6.2e-22 Score=158.44 Aligned_cols=58 Identities=71% Similarity=1.180 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCCCCCCCCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHH
Q psy3827 1 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYL 58 (581)
Q Consensus 1 Msg~gk~gk~~~k~~SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYL 58 (581)
|||+||+++.+++++|+|+|||||||||||||+|++++|++||+++||||||||||||
T Consensus 1 msg~g~g~~~~~k~~srS~rAgL~FPVgri~r~Lr~g~~a~Rvga~apVYlAAVLEYL 58 (58)
T PLN00155 1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYL 58 (58)
T ss_pred CCCCCCCCccccCccCcccccccccchHHHHHHHhcCChhhcccCCcHHHHHHHHHhC
Confidence 9999987766678899999999999999999999999999999999999999999997
No 23
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=99.82 E-value=7.9e-21 Score=165.38 Aligned_cols=87 Identities=49% Similarity=0.708 Sum_probs=83.9
Q ss_pred CCcchhhhhhhcccchhhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcc
Q psy3827 489 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 568 (581)
Q Consensus 489 pgt~alrEIR~yQkst~lLI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~k 568 (581)
||.++++|||+||++++++||++||+|++|+...+ ||+.+|+++|||+.|.|+..++|+++.||.|+||+||+++
T Consensus 1 ~~~~~~~~~r~~~~~~~~~Lp~apv~Ri~r~~~~~-----Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~ 75 (91)
T COG2036 1 PGAVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE-----RVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAE 75 (91)
T ss_pred CCcchHHHHHhhhhhhhhhcCchHHHHHHHHHhHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHH
Confidence 68899999999999999999999999999999886 9999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhccC
Q psy3827 569 DIQLARRIRGER 580 (581)
Q Consensus 569 DiqLa~rIrg~~ 580 (581)
||+|+.+.+|..
T Consensus 76 DI~la~~~~~~~ 87 (91)
T COG2036 76 DIKLALKRLGRR 87 (91)
T ss_pred HHHHHHHHhccc
Confidence 999999999863
No 24
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=99.65 E-value=8.3e-17 Score=133.26 Aligned_cols=75 Identities=48% Similarity=0.659 Sum_probs=71.9
Q ss_pred chhhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHh
Q psy3827 503 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 577 (581)
Q Consensus 503 st~lLI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIr 577 (581)
+|.++|++.||.|++|||..++..++||+++|+.+||+++|.|++.+||+++.||.|+||.||+++|||+|.|||
T Consensus 1 ~~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~~ 75 (75)
T PF00125_consen 1 RTRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRID 75 (75)
T ss_dssp HHSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHHT
T ss_pred CcccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhcC
Confidence 367899999999999999999888899999999999999999999999999999999999999999999999986
No 25
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=99.18 E-value=2e-11 Score=101.16 Aligned_cols=73 Identities=41% Similarity=0.607 Sum_probs=68.8
Q ss_pred CcccCcccchhHHHHHHhcCCccc-ccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhcc
Q psy3827 18 SSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 90 (581)
Q Consensus 18 SsRAgLqFPVgRI~RlLk~~~ya~-RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~nD 90 (581)
+.+..+.||+.|+.+.+..+.+.. |+++.|++||.+++||++.+|+|+|++.|..++++.|+|+||++|+++|
T Consensus 2 ~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~~ 75 (75)
T PF00125_consen 2 TRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRID 75 (75)
T ss_dssp HSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHHT
T ss_pred cccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhcC
Confidence 456788999999999999988774 9999999999999999999999999999999999999999999999976
No 26
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=98.75 E-value=1e-08 Score=85.87 Aligned_cols=58 Identities=22% Similarity=0.290 Sum_probs=52.2
Q ss_pred HHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHH
Q psy3827 518 REIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 575 (581)
Q Consensus 518 rEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~r 575 (581)
.|+++++.+..|++.+|.++||+.+|.|+.++++++..||.|++|.||+++||+|+..
T Consensus 8 ~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~ 65 (72)
T cd07981 8 QELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLE 65 (72)
T ss_pred HHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 3444555567999999999999999999999999999999999999999999999864
No 27
>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]
Probab=98.62 E-value=6.5e-08 Score=85.96 Aligned_cols=77 Identities=23% Similarity=0.445 Sum_probs=72.6
Q ss_pred ccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhccHHHHhhhcCc
Q psy3827 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGV 100 (581)
Q Consensus 24 qFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~nDeEL~~Lf~~v 100 (581)
-||+.||+++|+-......|+..+||...-.||++..+|+.++++.|+....+|||.+||..|+.+|+.++.|=..+
T Consensus 23 rFP~ar~KkIMQ~deDiGKV~q~tPVIaskalE~Fl~~iv~~s~k~aR~~~skR~t~e~lk~a~~sdekFdFL~~~~ 99 (113)
T COG5247 23 RFPIARLKKIMQLDEDIGKVGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKRMTSEFLKRATESDEKFDFLKNME 99 (113)
T ss_pred cCCHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999988775443
No 28
>PTZ00463 histone H2B; Provisional
Probab=98.27 E-value=1.3e-06 Score=79.53 Aligned_cols=65 Identities=18% Similarity=0.289 Sum_probs=60.5
Q ss_pred ccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhh----hhhhhcCCeeeeCcccHHHHHHHh
Q psy3827 509 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDT----NLCAIHAKRVTIMPKDIQLARRIR 577 (581)
Q Consensus 509 ~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda----~lcA~HaKRVTI~~kDiqLa~rIr 577 (581)
++..|..||+.++.++++|+.+++.||..| .+|+.++||.. ..++.+.||-||+++|||.|.||-
T Consensus 26 r~esy~~YI~KVLKqVhPd~gIS~kaM~Im----nSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrLl 94 (117)
T PTZ00463 26 RYDSYGLYIFKVLKQVHPDTGISRKSMNIM----NSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLV 94 (117)
T ss_pred ccchHHHHHHHHHHhhCCCCCccHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhhc
Confidence 467899999999999999999999999999 89999999987 778888999999999999999984
No 29
>PLN00158 histone H2B; Provisional
Probab=98.20 E-value=2.1e-06 Score=78.26 Aligned_cols=65 Identities=18% Similarity=0.328 Sum_probs=60.8
Q ss_pred ccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhh----hhhhhcCCeeeeCcccHHHHHHHh
Q psy3827 509 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDT----NLCAIHAKRVTIMPKDIQLARRIR 577 (581)
Q Consensus 509 ~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda----~lcA~HaKRVTI~~kDiqLa~rIr 577 (581)
++..|..+|+.++.++++|+.+++.|+..| ++|+.++||.. ..++.+.||-||+++|||.|.||-
T Consensus 25 r~esy~~YI~kVLKQVhPd~gIS~kaM~Im----nSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvrLv 93 (116)
T PLN00158 25 KTETYKIYIYKVLKQVHPDTGISSKAMSIM----NSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVRLI 93 (116)
T ss_pred ccccHHHHHHHHHHHhCCCCCccHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHh
Confidence 578899999999999999999999999999 89999999987 778888999999999999999984
No 30
>PLN00035 histone H4; Provisional
Probab=98.12 E-value=3.5e-06 Score=75.67 Aligned_cols=86 Identities=27% Similarity=0.398 Sum_probs=72.5
Q ss_pred CCCCCCCCCC----CCCCC---CCCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3827 1 MSGRGKGGKA----KAKSK---TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 73 (581)
Q Consensus 1 Msg~gk~gk~----~~k~~---SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~ 73 (581)
|||+||+||. ..++. -+.+-+| +|..-|.|+++++. ..|||..+-..+..+||.+..+|+.-|...|...
T Consensus 1 m~~~~k~~~g~g~~g~kr~~k~~~d~i~~--ipk~~IrRLARr~G-vkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA 77 (103)
T PLN00035 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHA 77 (103)
T ss_pred CCCCCCCCCCCCCCcchHHHHHHHhhhcc--CCHHHHHHHHHHcC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999997653 12222 2444455 88889999999877 7899999999999999999999999999999999
Q ss_pred CCcccchhhHHHHHhc
Q psy3827 74 KKTRIIPRHLQLAIRN 89 (581)
Q Consensus 74 kkkrItP~hL~lAI~n 89 (581)
+++-|+.+|+.+|+..
T Consensus 78 ~RKTV~~~DV~~Alkr 93 (103)
T PLN00035 78 RRKTVTAMDVVYALKR 93 (103)
T ss_pred CCCcCcHHHHHHHHHH
Confidence 9999999999999864
No 31
>KOG1659|consensus
Probab=98.05 E-value=7.2e-06 Score=81.44 Aligned_cols=74 Identities=20% Similarity=0.412 Sum_probs=70.7
Q ss_pred ccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhccHHHHhhh
Q psy3827 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 97 (581)
Q Consensus 24 qFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~nDeEL~~Lf 97 (581)
.||++||+++|+-.....+|....||.+.-.||.+..+|+..++.+++..+-++++|+||..||.+|+.++.|=
T Consensus 13 rfp~aRiKKIMQ~dEdIGKvaqavPViisralElFl~~l~~~t~~~t~~~~aKt~s~~hlkq~v~~~~~FdFLk 86 (224)
T KOG1659|consen 13 RFPPARIKKIMQSDEDIGKVAQAVPVIISRALELFLESLLQKTLEITRSRGAKTVSSSHLKQAVESDPKFDFLK 86 (224)
T ss_pred cCCHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCHHHHHHHHhccchhHHHH
Confidence 49999999999998889999999999999999999999999999999999999999999999999999987763
No 32
>smart00427 H2B Histone H2B.
Probab=98.01 E-value=6.9e-06 Score=71.99 Aligned_cols=62 Identities=19% Similarity=0.326 Sum_probs=58.1
Q ss_pred chhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhh----hhhhhcCCeeeeCcccHHHHHHHh
Q psy3827 512 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDT----NLCAIHAKRVTIMPKDIQLARRIR 577 (581)
Q Consensus 512 pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda----~lcA~HaKRVTI~~kDiqLa~rIr 577 (581)
.|..+|+.++++.++|+.+++.|+..| .+|+.++||.. ..++.+.||-||+++|||.|.||-
T Consensus 2 sy~~Yi~kvLKqVhpd~giS~kam~im----nSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~ 67 (89)
T smart00427 2 TYAIYIYKVLKQVHPDTGISSKAMSIM----NSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLI 67 (89)
T ss_pred cHHHHHHHHHHHhCCCccccHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHH
Confidence 688999999999999999999999999 89999999987 778888999999999999999984
No 33
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=97.93 E-value=2.1e-05 Score=64.10 Aligned_cols=64 Identities=20% Similarity=0.288 Sum_probs=57.5
Q ss_pred ccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHH
Q psy3827 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAI 87 (581)
Q Consensus 24 qFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI 87 (581)
.||+++|.|++|......+|+..|...++-..|.+..+|..-|...|...+++-|+|+||..|+
T Consensus 2 ~lP~a~vkri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 2 SLPLARVKRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp SS-HHHHHHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred CCChHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 5999999999999866779999999999999999999999999999999999999999999886
No 34
>KOG1744|consensus
Probab=97.81 E-value=2.3e-05 Score=72.63 Aligned_cols=65 Identities=28% Similarity=0.392 Sum_probs=61.6
Q ss_pred ccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhh----hhhhhcCCeeeeCcccHHHHHHHh
Q psy3827 509 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDT----NLCAIHAKRVTIMPKDIQLARRIR 577 (581)
Q Consensus 509 ~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda----~lcA~HaKRVTI~~kDiqLa~rIr 577 (581)
++..|..+|+.++.++++|+.+.+.|+.+| .+|+.++||+. +++|.+.||-||..++||+|.||-
T Consensus 35 ~~e~~s~yv~kvlk~Vhpd~gis~~a~~vm----nsf~ndife~iA~ea~rla~y~krstisSreiqta~rLl 103 (127)
T KOG1744|consen 35 RKESYSEYVYKVLKQVHPDLGISSKAMGVM----NSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVRLL 103 (127)
T ss_pred ccCceeeehhhhhhcccCCCCcCHHHHHHH----HHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHHHh
Confidence 678899999999999999999999999999 99999999987 999999999999999999999983
No 35
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=97.58 E-value=5.9e-05 Score=65.73 Aligned_cols=68 Identities=25% Similarity=0.295 Sum_probs=62.3
Q ss_pred hhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhcc
Q psy3827 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 579 (581)
Q Consensus 507 LI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~ 579 (581)
-||+.|..||+|.- .--|++.+|.+.+.++.|.|+-.+..|+..+|-||+|-||+..||.+|.+-.|.
T Consensus 13 gi~k~~I~RLarr~-----GvkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~ 80 (85)
T cd00076 13 GITKPAIRRLARRG-----GVKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 80 (85)
T ss_pred cCCHHHHHHHHHHc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCC
Confidence 38999999998743 357999999999999999999999999999999999999999999999998885
No 36
>PTZ00015 histone H4; Provisional
Probab=97.43 E-value=0.00039 Score=62.54 Aligned_cols=85 Identities=24% Similarity=0.368 Sum_probs=68.7
Q ss_pred CCCCCCCCCCCC--------CCCCCCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3827 1 MSGRGKGGKAKA--------KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD 72 (581)
Q Consensus 1 Msg~gk~gk~~~--------k~~SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~ 72 (581)
|||+||+++.-. +..-+.+-.| +|..-|.|+++.+. ..||+..+-..+..+||.+..+|+.-|...|..
T Consensus 1 ~~~~~k~~~~~~~~g~~kr~rk~~r~~i~g--I~k~~IrRLarr~G-vkRIS~d~y~e~r~vle~~l~~I~rdav~~aeH 77 (102)
T PTZ00015 1 MSGMGKGKKSLGAKGGQKRQKKVLRDNIRG--ITKGAIRRLARRGG-VKRISGDIYEEVRGVLKAFLENVVRDSTAYTEY 77 (102)
T ss_pred CCCcccCCCccccccchhhHHHHHhhcccC--CCHHHHHHHHHHcC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888887654321 1112333345 66679999999865 679999999999999999999999999999999
Q ss_pred hCCcccchhhHHHHHh
Q psy3827 73 NKKTRIIPRHLQLAIR 88 (581)
Q Consensus 73 ~kkkrItP~hL~lAI~ 88 (581)
.+++-|+.+||.+|+.
T Consensus 78 A~RKTVt~~DV~~AlK 93 (102)
T PTZ00015 78 ARRKTVTAMDVVYALK 93 (102)
T ss_pred cCCCcccHHHHHHHHH
Confidence 9999999999999975
No 37
>PLN00035 histone H4; Provisional
Probab=97.42 E-value=0.00012 Score=65.88 Aligned_cols=67 Identities=22% Similarity=0.261 Sum_probs=61.5
Q ss_pred hccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhcc
Q psy3827 508 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 579 (581)
Q Consensus 508 I~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~ 579 (581)
||+.|-.||+|.- .--|++.+|.+.|.++.|.|+-.+..|+...|-||+|-||+..||.+|.+-.|.
T Consensus 30 ipk~~IrRLARr~-----GvkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr~g~ 96 (103)
T PLN00035 30 ITKPAIRRLARRG-----GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96 (103)
T ss_pred CCHHHHHHHHHHc-----CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHcCC
Confidence 8999999998754 346999999999999999999999999999999999999999999999988775
No 38
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=97.40 E-value=0.00017 Score=59.69 Aligned_cols=63 Identities=21% Similarity=0.235 Sum_probs=53.8
Q ss_pred hccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHH
Q psy3827 508 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 575 (581)
Q Consensus 508 I~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~r 575 (581)
+|+.|..|+.+.+ +- -|.+.+|..+|.+..|.++-.+.+++..++.|+||-||++.||.+|.+
T Consensus 3 ~p~~~i~ria~~~----Gi-~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 3 LPKETIKDVAESL----GI-GNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred CCHHHHHHHHHHC----CC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 5666666665433 32 389999999999999999999999999999999999999999999864
No 39
>PTZ00015 histone H4; Provisional
Probab=97.39 E-value=0.00014 Score=65.31 Aligned_cols=68 Identities=22% Similarity=0.243 Sum_probs=61.5
Q ss_pred hhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhcc
Q psy3827 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 579 (581)
Q Consensus 507 LI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~ 579 (581)
-|++.|-.||+|.- .--|++.+|.+.+.++.|.||-.+..|+..+|-||+|-||+..||.+|.+-.|.
T Consensus 30 gI~k~~IrRLarr~-----GvkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr~g~ 97 (102)
T PTZ00015 30 GITKGAIRRLARRG-----GVKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKRQGR 97 (102)
T ss_pred CCCHHHHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCC
Confidence 48899988988743 447999999999999999999999999999999999999999999999988774
No 40
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=97.29 E-value=0.00034 Score=56.94 Aligned_cols=63 Identities=32% Similarity=0.385 Sum_probs=51.1
Q ss_pred CchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHH
Q psy3827 511 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 574 (581)
Q Consensus 511 ~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~ 574 (581)
+|..+ |+.|++......+++.+|..+|+.|+|.|+..|-..++..+-+.+|-||++.||..|.
T Consensus 3 lP~a~-vkri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 3 LPLAR-VKRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp S-HHH-HHHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred CChHH-HHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 44444 3556665556689999999999999999999999999999999999999999998763
No 41
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=97.23 E-value=0.00076 Score=56.67 Aligned_cols=59 Identities=17% Similarity=0.393 Sum_probs=55.6
Q ss_pred eeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHh
Q psy3827 247 YKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 305 (581)
Q Consensus 247 ykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 305 (581)
...+|++.|...++..|...|-.+.+|+.+.++.+|..||.+.++.||..+|||-+++-
T Consensus 8 ~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r 66 (72)
T cd07981 8 QELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLER 66 (72)
T ss_pred HHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999998764
No 42
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=97.11 E-value=0.00067 Score=62.18 Aligned_cols=66 Identities=20% Similarity=0.318 Sum_probs=60.2
Q ss_pred hhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhcc
Q psy3827 513 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 579 (581)
Q Consensus 513 F~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~ 579 (581)
..++|..|+.+.+ ..+++..+...|-|-++.|..++..|+...|-||+|.||...||+||...|+.
T Consensus 3 d~~~v~~iLk~~G-v~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~ 68 (117)
T cd07979 3 DARVIAAILKSMG-ITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD 68 (117)
T ss_pred HHHHHHHHHHHCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 3578888988763 45899999999999999999999999999999999999999999999999875
No 43
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=96.91 E-value=0.0025 Score=52.82 Aligned_cols=64 Identities=22% Similarity=0.267 Sum_probs=59.2
Q ss_pred ccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHh
Q psy3827 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (581)
Q Consensus 24 qFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~ 88 (581)
.+|..-|.|+.+.+.. .||+..+...|+-.+||...||+.-|.+.++..+++.++++||..|++
T Consensus 2 ~~p~~~i~ria~~~Gi-~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 2 WLPKETIKDVAESLGI-GNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred CCCHHHHHHHHHHCCC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 4789999999998764 499999999999999999999999999999999999999999999863
No 44
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=96.68 E-value=0.0016 Score=57.67 Aligned_cols=63 Identities=25% Similarity=0.407 Sum_probs=58.3
Q ss_pred eeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHhhCch
Q psy3827 246 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 309 (581)
Q Consensus 246 iykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLPg 309 (581)
|-|++|..-++ .+|+.|...|+..+..+++-|+.+|..+|.+.+|.||+..||+.|.+.+.+.
T Consensus 25 v~Ri~r~~~~~-Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~~~~~~ 87 (91)
T COG2036 25 VRRILRKAGAE-RVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALKRLGRR 87 (91)
T ss_pred HHHHHHHHhHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHhccc
Confidence 56778888888 9999999999999999999999999999999999999999999999987654
No 45
>smart00417 H4 Histone H4.
Probab=96.56 E-value=0.0011 Score=56.52 Aligned_cols=62 Identities=21% Similarity=0.211 Sum_probs=55.1
Q ss_pred hhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHH
Q psy3827 506 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 572 (581)
Q Consensus 506 lLI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqL 572 (581)
--||+.|..||+|.= .--|++.++.+.+.++.|.||-.+..|+..+|-||+|-||+..|+..
T Consensus 12 ~gI~k~~IrRLaRr~-----GvkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~ 73 (74)
T smart00417 12 QGITKPAIRRLARRG-----GVKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVY 73 (74)
T ss_pred cCCCHHHHHHHHHHc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHhee
Confidence 348999999998732 34699999999999999999999999999999999999999999853
No 46
>KOG0870|consensus
Probab=96.44 E-value=0.0026 Score=61.57 Aligned_cols=70 Identities=24% Similarity=0.301 Sum_probs=64.4
Q ss_pred hhhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHH
Q psy3827 504 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 575 (581)
Q Consensus 504 t~lLI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~r 575 (581)
.+|.+|++-..|||+|++.+. +.-++.+|..||++||--|+..|--.++-.|.-.+|-||++.|+-=+++
T Consensus 7 ~dl~lP~AiI~rlvke~l~E~--~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~ 76 (172)
T KOG0870|consen 7 EDLNLPNAIITRLVKEVLPES--NVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALD 76 (172)
T ss_pred HHhhccHHHHHHHHHHhCccc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHH
Confidence 368899999999999999986 7899999999999999999999999999999999999999999865543
No 47
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=96.40 E-value=0.003 Score=54.05 Aligned_cols=64 Identities=27% Similarity=0.262 Sum_probs=52.7
Q ss_pred chhHHHHHHHhhc--cccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHH
Q psy3827 512 PFQRLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 575 (581)
Q Consensus 512 pF~RLVrEI~~~~--~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~r 575 (581)
.+..-|-+|+++. ..++.|++..|.||-|-+=.++..+=.|.-..|-||+|.||++.|+.|..|
T Consensus 6 al~~~v~ki~ee~~~~~~~~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~R 71 (76)
T PF15630_consen 6 ALWYTVGKIVEEEAKEKGVEVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLAR 71 (76)
T ss_dssp HHHHHHHHHHHHCCCCTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhh
Confidence 3445566777765 367899999999999999999999999999999999999999999999765
No 48
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=96.02 E-value=0.011 Score=49.60 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=46.5
Q ss_pred HHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHH
Q psy3827 517 VREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 575 (581)
Q Consensus 517 VrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~r 575 (581)
+.|+++++.+...+..++.++|.+.|+.|+.+..+.+..+|-|.+--||.++|+|+...
T Consensus 5 l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Le 63 (68)
T PF03847_consen 5 LQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLE 63 (68)
T ss_dssp HHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 34555556788999999999999999999999999999999999999999999999764
No 49
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=95.99 E-value=0.018 Score=50.48 Aligned_cols=70 Identities=20% Similarity=0.318 Sum_probs=62.3
Q ss_pred CCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhc
Q psy3827 17 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (581)
Q Consensus 17 rSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~n 89 (581)
+.+-+| +|..-|.|+.+.+. ..|||..+-.-+..+||.+..+|+.-|...+...+++.|+++++.+|+..
T Consensus 8 ~~~~~g--i~k~~I~RLarr~G-vkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr 77 (85)
T cd00076 8 RDNIKG--ITKPAIRRLARRGG-VKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKR 77 (85)
T ss_pred HHhhcc--CCHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 344455 67779999999987 78999999999999999999999999999999999999999999999864
No 50
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=95.96 E-value=0.011 Score=54.35 Aligned_cols=59 Identities=25% Similarity=0.272 Sum_probs=54.4
Q ss_pred eeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHH
Q psy3827 246 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304 (581)
Q Consensus 246 iykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 304 (581)
|+|.||+-.--..||..|.--|-..+.++...|.+.|...++.+++.+||+|+|+.|++
T Consensus 26 i~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~ 84 (115)
T cd00074 26 IHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVR 84 (115)
T ss_pred HHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHh
Confidence 78888876566889999999999999999999999999999999999999999999987
No 51
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=95.68 E-value=0.022 Score=47.79 Aligned_cols=57 Identities=19% Similarity=0.420 Sum_probs=46.6
Q ss_pred eecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHH
Q psy3827 248 KVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304 (581)
Q Consensus 248 kVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 304 (581)
..++||-|+..+...+..+|-.+.+|+.+.+.+.|++||++.+..||..+|||-...
T Consensus 7 ~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Le 63 (68)
T PF03847_consen 7 ELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLE 63 (68)
T ss_dssp HHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999997653
No 52
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=95.22 E-value=0.026 Score=47.20 Aligned_cols=59 Identities=27% Similarity=0.323 Sum_probs=47.1
Q ss_pred HHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHH
Q psy3827 516 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 575 (581)
Q Consensus 516 LVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~r 575 (581)
-|+-|++.++- -..+.++..+|.+-+|.-|-.+.+++..++.|+||-++++.||..|.|
T Consensus 8 svk~iAes~Gi-~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 8 SVKDIAESLGI-SNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp HHHHHHHHTT----B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred HHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 46677776542 247899999999999999999999999999999999999999999875
No 53
>smart00417 H4 Histone H4.
Probab=95.14 E-value=0.03 Score=47.86 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=56.1
Q ss_pred cccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHH
Q psy3827 19 SRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 85 (581)
Q Consensus 19 sRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~l 85 (581)
+-.| +|..-|.|+++++. ..|||..+-..+..+||.+..+|+..|...+...+++-|+.+|+..
T Consensus 10 ~i~g--I~k~~IrRLaRr~G-vkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~ 73 (74)
T smart00417 10 NIQG--ITKPAIRRLARRGG-VKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVY 73 (74)
T ss_pred hhcC--CCHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHhee
Confidence 3345 56779999999876 5799999999999999999999999999999999999999998753
No 54
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=94.75 E-value=0.042 Score=51.54 Aligned_cols=65 Identities=28% Similarity=0.367 Sum_probs=53.2
Q ss_pred hHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhcc
Q psy3827 514 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 579 (581)
Q Consensus 514 ~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~ 579 (581)
.|+|+.|+.+.+- ..++...+.-|-|=+-.|..++++|+...|-||+|.+|...|++||...|..
T Consensus 15 a~~i~~iL~~~Gv-~~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~~r~~ 79 (129)
T PF02291_consen 15 ARVIHLILKSMGV-TEYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQSRLD 79 (129)
T ss_dssp HHHHHHHHHHTT----B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHHHT--
T ss_pred HHHHHHHHHHcCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHh
Confidence 5788889888752 2579999999999999999999999999999999999999999999988754
No 55
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=94.64 E-value=0.064 Score=45.48 Aligned_cols=51 Identities=27% Similarity=0.219 Sum_probs=47.4
Q ss_pred cccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhcc
Q psy3827 529 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 579 (581)
Q Consensus 529 Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~ 579 (581)
+.+.+|++.|.+..|.|+..+=+.+...+-|++|.+..+.|+.+|..--|.
T Consensus 23 ~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~~gi 73 (77)
T smart00576 23 SFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALENLGI 73 (77)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCc
Confidence 889999999999999999999999999999999999999999999765443
No 56
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.38 E-value=0.052 Score=57.98 Aligned_cols=64 Identities=20% Similarity=0.258 Sum_probs=56.8
Q ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhcc
Q psy3827 515 RLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 579 (581)
Q Consensus 515 RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~ 579 (581)
..|+.|++..+- -+...+|..+|-+-+|.++-.+.+++..+|.|+||-||+..||.+|.+.++.
T Consensus 3 ~~i~~ia~~~Gi-~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~~n~ 66 (343)
T cd08050 3 ESIKLIAESLGI-DSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRLRNV 66 (343)
T ss_pred hHHHHHHHHcCC-CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHhCC
Confidence 357777776532 2889999999999999999999999999999999999999999999999865
No 57
>KOG1657|consensus
Probab=93.90 E-value=0.053 Score=55.49 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=70.1
Q ss_pred cCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhccHHHHhhhc
Q psy3827 21 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 98 (581)
Q Consensus 21 AgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~nDeEL~~Lf~ 98 (581)
.-..||++||+++||......-|...|||.++-..|++..|+-..++..+..++++-+.=.||..++.+.+-++.|..
T Consensus 71 ~~~~lPlaRiKkimK~dedv~mI~~Eapvl~aka~E~Fi~elt~~sw~~Tee~~rrtl~~sdia~av~~s~~fdFL~D 148 (236)
T KOG1657|consen 71 KNHILPLARIKKIMKSDEDVSMITAEAPVLFAKACELFITELTLRSWVHTEENKRRTLQKSDIAAAVTQSETFDFLRD 148 (236)
T ss_pred hhccCcHhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHhccCCCccceec
Confidence 356799999999999988888999999999999999999999888889998888888888899999999988887774
No 58
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Probab=93.69 E-value=0.15 Score=51.60 Aligned_cols=90 Identities=19% Similarity=0.359 Sum_probs=75.2
Q ss_pred CcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhccHHHHhhhcCce
Q psy3827 22 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVT 101 (581)
Q Consensus 22 gLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~nDeEL~~Lf~~vt 101 (581)
.+.+|..||+++||-..-..-|++.|||.++-+-|-++.|+--.|.-.|..|++.-+.-.+|..|+...+-++.|+- +
T Consensus 107 ~h~LPlARIkkvMKtdedVkMisaEaPvlFak~~EiFI~ELTmRAW~~ae~NkRRtLQksDia~Av~kSeMfDFLid-i- 184 (286)
T COG5208 107 DHNLPLARIKKVMKTDEDVKMISAEAPVLFAKITEIFIEELTMRAWINAEENKRRTLQKSDIAAAVKKSEMFDFLID-I- 184 (286)
T ss_pred hccCcHHHHHHHHhcccchhheecccchHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHhHHhh-h-
Confidence 35699999999999887777899999999999999999999999988888888887888899999999988888873 2
Q ss_pred ecCCCcCCccccc
Q psy3827 102 IAQGGVLPNIQAG 114 (581)
Q Consensus 102 Ia~GGVlP~Iv~~ 114 (581)
|+ .-..++.+++
T Consensus 185 vp-r~p~n~~~~S 196 (286)
T COG5208 185 VP-RNPFNHLVPS 196 (286)
T ss_pred cc-CCCccccCch
Confidence 33 3355665554
No 59
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=93.26 E-value=0.058 Score=59.13 Aligned_cols=54 Identities=33% Similarity=0.464 Sum_probs=41.5
Q ss_pred HHHHHHhhc-----cccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCccc
Q psy3827 516 LVREIAQDF-----KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 569 (581)
Q Consensus 516 LVrEI~~~~-----~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kD 569 (581)
+||.+++.| ...+++.++||.||+.|+|-|.-+|=+|....|-||+|-||...|
T Consensus 356 ~vK~la~~~ak~s~~sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD 414 (414)
T PF15511_consen 356 VVKKLAQHFAKSSGGSKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD 414 (414)
T ss_dssp HHHHHHHHHH-------S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred HHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 455555554 367999999999999999999999999999999999999998766
No 60
>KOG1142|consensus
Probab=93.16 E-value=0.059 Score=55.64 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=62.8
Q ss_pred hcccchhhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHH
Q psy3827 499 RYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 574 (581)
Q Consensus 499 ~yQkst~lLI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~ 574 (581)
.++-+++.++-|--..-||++| ..+--+-.++-+.|.|.|++|+-++--.+..+|.|.|--||.++||+|..
T Consensus 146 ~~~~~~~~il~k~kl~dLvqqI----d~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhL 217 (258)
T KOG1142|consen 146 QDEPGNNPILSKRKLDDLVQQI----DGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHL 217 (258)
T ss_pred cccCCCCccccccchhHHHHhh----cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeee
Confidence 5667777777777777777777 45677889999999999999999999999999999999999999999975
No 61
>smart00428 H3 Histone H3.
Probab=93.07 E-value=0.087 Score=47.89 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=58.1
Q ss_pred cceeEeeeeecccccC--CCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHhh
Q psy3827 240 ESYAIYIYKVLKQVHP--DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 306 (581)
Q Consensus 240 esy~~YiykVLKQVhp--d~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 306 (581)
-.|+.-+..+.....+ |..+++.|+..|.....+..-.+.++|..++.+.||.||..+|||-|.|+-
T Consensus 33 ~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvTl~~kDi~La~rir 101 (105)
T smart00428 33 APFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARRIR 101 (105)
T ss_pred ccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHhhHHHHHHHh
Confidence 3565556666666677 899999999999999999999999999999999999999999999998763
No 62
>KOG0869|consensus
Probab=92.45 E-value=0.16 Score=49.24 Aligned_cols=80 Identities=23% Similarity=0.310 Sum_probs=63.6
Q ss_pred eeeecccccCC-CCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHhh--------CchHHhhhhh
Q psy3827 246 IYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL--------LPGELAKHAV 316 (581)
Q Consensus 246 iykVLKQVhpd-~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl--------LPgeLaKhAv 316 (581)
|-|+.|..-|. ..||..|-.+|--.|..+.-=|..||+.-++..||+||+..||-.|+--| |---|.|+=.
T Consensus 38 V~RIMK~~lP~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~tLGFe~Y~eplkiyL~kYRe 117 (168)
T KOG0869|consen 38 VSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMSTLGFENYAEPLKIYLQKYRE 117 (168)
T ss_pred HHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHHHcCcHhHHHHHHHHHHHHHH
Confidence 45777777665 88999999999999999999999999999999999999999999997643 2234455555
Q ss_pred hhhcchhhc
Q psy3827 317 SEGTKAVTK 325 (581)
Q Consensus 317 seGtkAVtk 325 (581)
.||-+....
T Consensus 118 ~e~e~~~~~ 126 (168)
T KOG0869|consen 118 LEGERGRSG 126 (168)
T ss_pred Hhhhccccc
Confidence 555554443
No 63
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=91.67 E-value=0.68 Score=40.55 Aligned_cols=63 Identities=25% Similarity=0.425 Sum_probs=54.9
Q ss_pred cchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCC---cccchhhHHHHHh
Q psy3827 25 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK---TRIIPRHLQLAIR 88 (581)
Q Consensus 25 FPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kk---krItP~hL~lAI~ 88 (581)
||-..|+|++.. .....++....+.++++---+..||.|.|...-..... ..|.|+||+.|.+
T Consensus 17 f~k~~iKr~~~~-~~~~~v~~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~r 82 (85)
T cd08048 17 FPKAAIKRLIQS-VTGQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYR 82 (85)
T ss_pred ccHHHHHHHHHH-HcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHH
Confidence 788899999884 45689999999999999999999999999887776544 7899999999875
No 64
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=90.56 E-value=0.54 Score=43.29 Aligned_cols=62 Identities=11% Similarity=0.195 Sum_probs=52.9
Q ss_pred eeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHhhCc
Q psy3827 246 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 308 (581)
Q Consensus 246 iykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLP 308 (581)
|.++||.- --...+.++...|.-|+....+.|+.+|..++.+.+|+||+..||..|+...+.
T Consensus 7 v~~iLk~~-Gv~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~ 68 (117)
T cd07979 7 IAAILKSM-GITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD 68 (117)
T ss_pred HHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 44555542 224678999999999999999999999999999999999999999999887765
No 65
>PLN00156 histone H2AX; Provisional
Probab=88.91 E-value=0.45 Score=45.30 Aligned_cols=59 Identities=25% Similarity=0.272 Sum_probs=53.3
Q ss_pred eeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHH
Q psy3827 246 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304 (581)
Q Consensus 246 iykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 304 (581)
|+|.||.-+---.|+..|.--|-..+.++...|-+-|..-++.+++.-|++|.||.|+|
T Consensus 35 i~R~Lk~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~lAIr 93 (139)
T PLN00156 35 IARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
T ss_pred HHHHHhcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHhhcc
Confidence 78889887777789999999888888888888888899999999999999999999987
No 66
>KOG1142|consensus
Probab=88.88 E-value=0.37 Score=49.95 Aligned_cols=70 Identities=20% Similarity=0.341 Sum_probs=61.4
Q ss_pred eeeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHH----hhCchHHhhh
Q psy3827 245 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR----LLLPGELAKH 314 (581)
Q Consensus 245 YiykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr----LlLPgeLaKh 314 (581)
-+...++||.+++.|-..+-.+|--+..|+.|-|..-|++||++.|..||-.|||+-.+. +-+||.=+-+
T Consensus 159 kl~dLvqqId~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~~Nm~iPgf~sd~ 232 (258)
T KOG1142|consen 159 KLDDLVQQIDGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLERNFNMEIPGFSSDE 232 (258)
T ss_pred chhHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeeeccccccCCCccccc
Confidence 367789999999999999999999999999999999999999999999999999997754 5567764433
No 67
>KOG0871|consensus
Probab=88.27 E-value=0.61 Score=44.86 Aligned_cols=66 Identities=21% Similarity=0.359 Sum_probs=59.2
Q ss_pred eeeecccccC-CCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHhhCchHH
Q psy3827 246 IYKVLKQVHP-DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL 311 (581)
Q Consensus 246 iykVLKQVhp-d~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLPgeL 311 (581)
|.|+.|.+-| |..+...|-.+++..--.+..-|+.||...|....|+||....|+.|..-|==||.
T Consensus 18 v~KmIke~lP~d~rvakeareliincCvEFI~liSsEAneic~~e~KKTIa~EHV~KALe~LgF~eY 84 (156)
T KOG0871|consen 18 VNKMIKEMLPKDVRVAKEARELIINCCVEFINLISSEANEICNKEAKKTIAPEHVIKALENLGFGEY 84 (156)
T ss_pred HHHHHHHhCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHHcchHHH
Confidence 6688899999 99999999999998888888999999999999999999999999999886644444
No 68
>KOG3219|consensus
Probab=86.95 E-value=1 Score=45.16 Aligned_cols=66 Identities=21% Similarity=0.374 Sum_probs=55.7
Q ss_pred cccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhh-CCcccchhhHHHHHhc
Q psy3827 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN-KKTRIIPRHLQLAIRN 89 (581)
Q Consensus 23 LqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~-kkkrItP~hL~lAI~n 89 (581)
-.||-+.|++|+.. ...+-|+..+.++++++-.-+.-||.|.|....... ....+.|.||..|.+-
T Consensus 111 s~f~Ka~iKkL~~~-itg~~v~~nv~Ia~~GiaKvFVGEvVEeAl~V~~~~~e~~PLqP~HIREA~rr 177 (195)
T KOG3219|consen 111 SAFPKAQIKKLMSS-ITGQSVSENVAIAMAGIAKVFVGEVVEEALDVREEWGESGPLQPKHIREAYRR 177 (195)
T ss_pred hcCCHHHHHHHHHH-HhCCccCcceeeeecchhhHhHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHH
Confidence 45999999999996 334449999999999999999999999998877654 3567999999988763
No 69
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=86.88 E-value=1.9 Score=36.19 Aligned_cols=64 Identities=20% Similarity=0.273 Sum_probs=46.5
Q ss_pred ccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHh
Q psy3827 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (581)
Q Consensus 24 qFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~ 88 (581)
.||..-|+-+-..-.. .-++..+.-.|+-=+||-..||++-|.+..+..+++++|+.||+.|++
T Consensus 3 ~~~~esvk~iAes~Gi-~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 3 VFSQESVKDIAESLGI-SNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp ---HHHHHHHHHHTT----B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred cCCHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 3555666555543332 257788999999999999999999999999999999999999999874
No 70
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=85.12 E-value=1.4 Score=39.07 Aligned_cols=63 Identities=21% Similarity=0.348 Sum_probs=46.9
Q ss_pred cchhHHHHHHhcCCcc-cccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhC-CcccchhhHHHHHh
Q psy3827 25 FPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNK-KTRIIPRHLQLAIR 88 (581)
Q Consensus 25 FPVgRI~RlLk~~~ya-~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~k-kkrItP~hL~lAI~ 88 (581)
||-+-|++++.. ... +-|+....+.++++--.+..||.|.|-....... ...|.|.||.-|.+
T Consensus 24 ~~k~~ikkli~~-~~~~qsv~~~v~i~v~g~aKvFVGEiVE~A~~Vq~~~~~~~pl~P~hlreA~r 88 (90)
T PF04719_consen 24 FNKAAIKKLINQ-VLGNQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGETGPLQPDHLREAYR 88 (90)
T ss_dssp --HHHHHHHHHH-HHS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS--HHHHHHHHH
T ss_pred CCHHHHHHHHHH-HcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 788899999996 334 7899999999999999999999999988776543 45899999998865
No 71
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=85.10 E-value=1.3 Score=47.56 Aligned_cols=50 Identities=20% Similarity=0.319 Sum_probs=47.6
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhc
Q psy3827 40 AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (581)
Q Consensus 40 a~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~n 89 (581)
..|++..|...|+..+||-..+|++.|.+.++..++++++++||+.|++.
T Consensus 14 i~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~ 63 (343)
T cd08050 14 IDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRL 63 (343)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Confidence 56999999999999999999999999999999999999999999999874
No 72
>smart00414 H2A Histone 2A.
Probab=84.68 E-value=0.96 Score=41.20 Aligned_cols=59 Identities=22% Similarity=0.278 Sum_probs=44.9
Q ss_pred eeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHH
Q psy3827 246 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304 (581)
Q Consensus 246 iykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 304 (581)
|+|.||.-..--.|++.|.--|-..+..+...|-+-|..-++.+++..||+|+|+.|++
T Consensus 15 i~r~Lk~~~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~ 73 (106)
T smart00414 15 IHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIR 73 (106)
T ss_pred HHHHHHcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhcc
Confidence 66667665555577777777666666666666666677778889999999999999987
No 73
>PLN00157 histone H2A; Provisional
Probab=84.66 E-value=0.77 Score=43.43 Aligned_cols=59 Identities=29% Similarity=0.281 Sum_probs=53.0
Q ss_pred eeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHH
Q psy3827 246 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304 (581)
Q Consensus 246 iykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 304 (581)
|+|.||+-+.-..|++.|.--|-..+.++...|-+-|..-++.+++.-|++|.||.|++
T Consensus 32 i~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~ 90 (132)
T PLN00157 32 IARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVR 90 (132)
T ss_pred HHHHHhcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHhhccc
Confidence 88889987777889999998888888888888888888999999999999999999987
No 74
>KOG3334|consensus
Probab=83.88 E-value=1.9 Score=41.46 Aligned_cols=66 Identities=23% Similarity=0.416 Sum_probs=54.9
Q ss_pred hHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhccC
Q psy3827 514 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 580 (581)
Q Consensus 514 ~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~~ 580 (581)
.+++--|+.+++- --|....+.-|=|-+=.|.+++++|+...+-||++-||...|++||...|+.+
T Consensus 16 a~~i~~iL~s~GI-~eyEprVi~qlLefa~rYtt~vL~DA~vys~HA~ka~i~~eDVrlA~~~~~~~ 81 (148)
T KOG3334|consen 16 ARVIASILKSLGI-QEYEPRVINQLLEFAYRYTTTVLDDAKVYSSHAKKATIDAEDVRLAIQMRVDH 81 (148)
T ss_pred HHHHHHHHHHcCc-cccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHhcc
Confidence 3566667666541 24567788888899999999999999999999999999999999999988763
No 75
>PLN00153 histone H2A; Provisional
Probab=83.56 E-value=1.2 Score=42.03 Aligned_cols=59 Identities=22% Similarity=0.265 Sum_probs=52.8
Q ss_pred eeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHH
Q psy3827 246 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304 (581)
Q Consensus 246 iykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 304 (581)
|+|.||+-+.--.|++.|.--|-..+..+...|-+-|..-++.|++.-|++|.||.|++
T Consensus 30 i~R~Lr~g~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~ 88 (129)
T PLN00153 30 IARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIR 88 (129)
T ss_pred HHHHHhcCchhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHhhcc
Confidence 78888887777789999998888888888888888889999999999999999999987
No 76
>PTZ00017 histone H2A; Provisional
Probab=83.44 E-value=1 Score=42.73 Aligned_cols=59 Identities=24% Similarity=0.273 Sum_probs=49.3
Q ss_pred eeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHH
Q psy3827 246 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304 (581)
Q Consensus 246 iykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 304 (581)
|+|.||.-+.--.|+..|.--|-..+.++...|-+-|..-++.|++.-||+|.||.|++
T Consensus 33 i~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~RItPrHi~lAI~ 91 (134)
T PTZ00017 33 VHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIR 91 (134)
T ss_pred HHHHHhccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHhhcc
Confidence 77788876666688888887777777777777777888889999999999999999997
No 77
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=77.96 E-value=6.9 Score=33.17 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=50.4
Q ss_pred HHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhc
Q psy3827 30 IHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (581)
Q Consensus 30 I~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~n 89 (581)
|.++|+.-. ..+++.+|.-.|+-++|-...+|.+.+-+.|...+++..++.|+..|+.+
T Consensus 12 Vaqil~~~G-f~~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~ 70 (77)
T smart00576 12 VAQILESAG-FDSFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALEN 70 (77)
T ss_pred HHHHHHHcC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 456677544 35999999999999999999999999999998889999999999999754
No 78
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=77.93 E-value=2.2 Score=39.81 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=52.3
Q ss_pred eeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHH
Q psy3827 246 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304 (581)
Q Consensus 246 iykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 304 (581)
|.|.||.-.-.+.|+++|.--+...+..+--.|-+-|...|+-+++.-|++|.||-|+|
T Consensus 32 vkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~PrHlqlAIr 90 (132)
T COG5262 32 VKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRHLQLAIR 90 (132)
T ss_pred HHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechHHHHHHhc
Confidence 67788866677899999998888888888888888899999999999999999999987
No 79
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=77.01 E-value=2.7 Score=35.30 Aligned_cols=53 Identities=25% Similarity=0.214 Sum_probs=47.7
Q ss_pred ccc-cccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhc
Q psy3827 526 TDL-RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 578 (581)
Q Consensus 526 ~~~-Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg 578 (581)
.+| ..+..||+.|-+.++.||..+-..+...|-|+.|-...+.|+.++..=-|
T Consensus 19 ~GF~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~~~g 72 (77)
T PF07524_consen 19 AGFDSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALEEMG 72 (77)
T ss_pred cCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 445 68999999999999999999999999999999999999999998876444
No 80
>KOG3467|consensus
Probab=76.43 E-value=6.5 Score=35.02 Aligned_cols=85 Identities=28% Similarity=0.414 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCC-------CCCCCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3827 1 MSGRGKGGKAKAK-------SKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 73 (581)
Q Consensus 1 Msg~gk~gk~~~k-------~~SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~ 73 (581)
||++||++|.-.| +.-+.+-.|++-| -|.|+-+.+.. .||+-..---.-.++.-+..+++..|.-.+...
T Consensus 1 Ms~r~~g~KG~~KG~AKrHRK~LsDnIqgitKp--aIRRlARr~GV-kRi~G~~yeE~~~~~k~fl~n~i~~A~~yt~HA 77 (103)
T KOG3467|consen 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKP--AIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHA 77 (103)
T ss_pred CCCcCccccccccchHHHHHHHHHhhccccchH--HHHHHHHhcCc-chhchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8999887765322 1223445566666 68888887664 478766555555566556678888888888888
Q ss_pred CCcccchhhHHHHHh
Q psy3827 74 KKTRIIPRHLQLAIR 88 (581)
Q Consensus 74 kkkrItP~hL~lAI~ 88 (581)
+++-||.-++-.+..
T Consensus 78 KRKTvT~~dvv~~LK 92 (103)
T KOG3467|consen 78 KRKTVTAMDVVYALK 92 (103)
T ss_pred hhceeeHHHHHHHHH
Confidence 999999988876543
No 81
>PTZ00252 histone H2A; Provisional
Probab=75.28 E-value=3.4 Score=39.26 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=47.2
Q ss_pred eeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhh--ccCCcccchhHHHHHHH
Q psy3827 246 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAH--YNKRSTITSREIQTAVR 304 (581)
Q Consensus 246 iykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~--~nkr~TitsreIqtAvr 304 (581)
|+|.|++-+---.|++.|.--|-..+.++...|-+-|..-++ .||+.-|++|.||.|||
T Consensus 31 i~R~Lr~g~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi~lAIr 91 (134)
T PTZ00252 31 VGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTVTLAVR 91 (134)
T ss_pred HHHHHHcCCcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHhhcc
Confidence 777788877777888888887777777776666666766664 48999999999999987
No 82
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=74.92 E-value=4.9 Score=34.64 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=43.1
Q ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHH
Q psy3827 254 HPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304 (581)
Q Consensus 254 hpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 304 (581)
..+..+|.+.++.|--++.+..+.+|.+---.|++.+|+||+..|+.-.+|
T Consensus 21 ~~~~~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~R 71 (76)
T PF15630_consen 21 EKGVEVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLAR 71 (76)
T ss_dssp CTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTT
T ss_pred ccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhh
Confidence 467889999999999999999999999999999999999999999865443
No 83
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=74.06 E-value=13 Score=31.80 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=47.3
Q ss_pred chhHHHHHHhcCC--cccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcc-cchhhHHHH
Q psy3827 26 PVGRIHRLLRKGN--YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTR-IIPRHLQLA 86 (581)
Q Consensus 26 PVgRI~RlLk~~~--ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkr-ItP~hL~lA 86 (581)
|-.-|.|+|+... -.-||+..|--.++..|+-++.|-+-.|...|++.+... |.++||+..
T Consensus 1 p~~li~rll~~~f~~~~tkIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e~~~~~le~e~LEki 64 (72)
T PF09415_consen 1 PPELIARLLHEHFKDDKTKISKDALKLSAEYLRIFVREAVARAAEQAEAEGDEGFLEVEHLEKI 64 (72)
T ss_dssp -CHHHHHHHCTTSSSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSEE-HHHHHHH
T ss_pred ChHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 4556788888532 345999999999999999999999999999999888888 999999863
No 84
>PLN00154 histone H2A; Provisional
Probab=71.96 E-value=3.8 Score=39.05 Aligned_cols=59 Identities=22% Similarity=0.215 Sum_probs=45.6
Q ss_pred eeeeccccc-CCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHH
Q psy3827 246 IYKVLKQVH-PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304 (581)
Q Consensus 246 iykVLKQVh-pd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 304 (581)
|.+.||.-. -...|++.|.--|-..+.++--.|-+-|..-++.+++.-||+|.||.|+|
T Consensus 44 i~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIr 103 (136)
T PLN00154 44 IHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
T ss_pred HHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhcc
Confidence 777888864 34578888877666666666656666677778899999999999999987
No 85
>PLN00121 histone H3; Provisional
Probab=64.64 E-value=5.1 Score=38.21 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=47.2
Q ss_pred eeEeeeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHh
Q psy3827 242 YAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 305 (581)
Q Consensus 242 y~~YiykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 305 (581)
|+.-+..+.....++..+.+.|+.-|---..+..=.+-+++.-.+.+.||.||..+|||-|.||
T Consensus 68 F~RLVREI~~~~~~~~Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~ri 131 (136)
T PLN00121 68 FQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_pred HHHHHHHHHHHhCccceeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHHHHHHh
Confidence 4444444555556788999999988874444444444447888999999999999999999875
No 86
>KOG0870|consensus
Probab=63.94 E-value=11 Score=37.13 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=45.9
Q ss_pred eeeecccccCC--CCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHhh
Q psy3827 246 IYKVLKQVHPD--TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 306 (581)
Q Consensus 246 iykVLKQVhpd--~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 306 (581)
|-|+.|.+-|+ ..||..|...|-.-..=+.--+..-|..+|+-++|+||+..||-.|.+-+
T Consensus 16 I~rlvke~l~E~~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~Ei 78 (172)
T KOG0870|consen 16 ITRLVKEVLPESNVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALDEI 78 (172)
T ss_pred HHHHHHHhCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHh
Confidence 44555666555 79999998887643333334456778889999999999999999999855
No 87
>KOG1756|consensus
Probab=61.77 E-value=9.2 Score=36.19 Aligned_cols=59 Identities=24% Similarity=0.297 Sum_probs=45.6
Q ss_pred eeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHH
Q psy3827 246 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304 (581)
Q Consensus 246 iykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 304 (581)
|.|.||.-..-..|+..|---|-..+..+--.|-+-|..-|+-|++.-|++|.||-|++
T Consensus 33 i~r~Lr~~~~~~ri~~gapV~laavLeYL~Aeile~agnaardnkk~ri~PrH~~lAI~ 91 (131)
T KOG1756|consen 33 IHRLLRKGRYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRITPRHLQLAIR 91 (131)
T ss_pred HHHHHHccchhhhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccccChHHHHHHHh
Confidence 67778887777888888877666555555555555566677889999999999999987
No 88
>PTZ00018 histone H3; Provisional
Probab=60.13 E-value=6.8 Score=37.40 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=47.0
Q ss_pred eeEeeeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHh
Q psy3827 242 YAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 305 (581)
Q Consensus 242 y~~YiykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 305 (581)
|+.-+..+.....++..+.+.|+.-|---..+..=.+-+++.-.+.+.||.||..+|||-|.||
T Consensus 68 F~RLVREI~~~~~~~~rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~ri 131 (136)
T PTZ00018 68 FQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_pred HHHHHHHHHHHcCCcceeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHHHh
Confidence 4444444554556788999999988875444444444457888899999999999999999875
No 89
>PF15510 CENP-W: Centromere kinetochore component W
Probab=53.41 E-value=8.9 Score=34.48 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHhhCc
Q psy3827 265 SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 308 (581)
Q Consensus 265 ~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLP 308 (581)
--+|.++ +..|+|+||---|.-||+.||....|+.|.+.+|.
T Consensus 57 vhLncLL--FvhrLAEEaRtnA~EnK~~~Ik~~Hv~AaaKviLK 98 (102)
T PF15510_consen 57 VHLNCLL--FVHRLAEEARTNACENKCGTIKKEHVLAAAKVILK 98 (102)
T ss_pred eehhHHH--HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 3455443 46899999999999999999999999999988774
No 90
>KOG0871|consensus
Probab=53.25 E-value=41 Score=32.77 Aligned_cols=69 Identities=19% Similarity=0.336 Sum_probs=51.3
Q ss_pred ccCcccchhHHHHHHhcCCc-ccccCCCch-HHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhc
Q psy3827 20 RAGLQFPVGRIHRLLRKGNY-AERVGAGAP-VYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (581)
Q Consensus 20 RAgLqFPVgRI~RlLk~~~y-a~RVs~sAp-VyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~n 89 (581)
.-++.+|-.-|..++++.-. -.||...|- .++..++||+- =|---|-..|....++-|.|+|+..|..|
T Consensus 8 dde~sLPkAtv~KmIke~lP~d~rvakeareliincCvEFI~-liSsEAneic~~e~KKTIa~EHV~KALe~ 78 (156)
T KOG0871|consen 8 DDELSLPKATVNKMIKEMLPKDVRVAKEARELIINCCVEFIN-LISSEANEICNKEAKKTIAPEHVIKALEN 78 (156)
T ss_pred cccccCcHHHHHHHHHHhCCcccccchHHHHHHHHHHHHHHH-HHHHHHHHHHhHHhcccCCHHHHHHHHHH
Confidence 45788999999999998766 568886554 55666677663 23333556777778899999999999876
No 91
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=51.09 E-value=20 Score=39.74 Aligned_cols=44 Identities=18% Similarity=0.282 Sum_probs=36.1
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhH
Q psy3827 255 PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSRE 298 (581)
Q Consensus 255 pd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~Titsre 298 (581)
-.+.|+.+||..+.......||.++..=.-.|.+.+|+||...|
T Consensus 371 sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD 414 (414)
T PF15511_consen 371 SKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD 414 (414)
T ss_dssp --S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 56899999999999999999999999999999999999998654
No 92
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=43.63 E-value=15 Score=32.62 Aligned_cols=63 Identities=16% Similarity=0.225 Sum_probs=31.3
Q ss_pred hhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHH
Q psy3827 513 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 575 (581)
Q Consensus 513 F~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~r 575 (581)
|..=|+.++-.|+..-.=..+.+..|.+..-.|++.+...|..+|.+..+-+|.+.|+-.+.|
T Consensus 3 f~~eI~~mMy~fGD~~~P~~eTv~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR 65 (93)
T PF02269_consen 3 FSKEIRQMMYGFGDVEEPLPETVDLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLR 65 (93)
T ss_dssp -CCCCHHHHHCTTS-SS--HHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred hHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHh
Confidence 334455666666655566788889999999999999999999999999999999999988765
No 93
>KOG3467|consensus
Probab=43.56 E-value=24 Score=31.52 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=39.1
Q ss_pred cccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhc
Q psy3827 529 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 578 (581)
Q Consensus 529 Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg 578 (581)
|+..-..+-...++..||-+...++...+-||||-||+.-|+--+..-.|
T Consensus 46 Ri~G~~yeE~~~~~k~fl~n~i~~A~~yt~HAKRKTvT~~dvv~~LKR~G 95 (103)
T KOG3467|consen 46 RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 95 (103)
T ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeHHHHHHHHHHcC
Confidence 33334445556677889999999999999999999999999987765444
No 94
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=43.42 E-value=19 Score=27.24 Aligned_cols=34 Identities=32% Similarity=0.431 Sum_probs=26.4
Q ss_pred HHHHHhhhCCcccchhhHHHHHhccH--HHHhhhcC
Q psy3827 66 AGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLLSG 99 (581)
Q Consensus 66 Agn~A~~~kkkrItP~hL~lAI~nDe--EL~~Lf~~ 99 (581)
|-+.|...+...|+|+||-+|+-.|+ ....+|+.
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~ 36 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILKK 36 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHH
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHH
Confidence 45678889999999999999987766 66677653
No 95
>KOG2549|consensus
Probab=42.26 E-value=48 Score=38.31 Aligned_cols=48 Identities=19% Similarity=0.316 Sum_probs=42.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHhh
Q psy3827 259 VSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 306 (581)
Q Consensus 259 ISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 306 (581)
|+.++-..+---|..=.+.|+.||++..+..||.++|..||-.|.|.+
T Consensus 29 l~deaa~~La~dv~yrikEI~Q~aaKfm~hskR~kLtv~DV~~ALr~~ 76 (576)
T KOG2549|consen 29 LNDEAALLLAEDVEYRIKEIVQDAAKFMVHSKRTKLTVDDVDYALRSL 76 (576)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHhhc
Confidence 567777778777888889999999999999999999999999998854
No 96
>PLN00161 histone H3; Provisional
Probab=41.97 E-value=24 Score=33.74 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=38.2
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHhh
Q psy3827 256 DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 306 (581)
Q Consensus 256 d~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 306 (581)
+..+.+.|+.-|---..+..=.+-++|.-.+.+.||.||..+|||-|.||-
T Consensus 76 ~~Rfq~~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~kDm~La~rir 126 (135)
T PLN00161 76 PFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQLARRIR 126 (135)
T ss_pred CcEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhc
Confidence 588888888877644333333333477788899999999999999998753
No 97
>PLN00160 histone H3; Provisional
Probab=41.73 E-value=51 Score=29.88 Aligned_cols=50 Identities=20% Similarity=0.184 Sum_probs=37.1
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHh
Q psy3827 256 DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 305 (581)
Q Consensus 256 d~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 305 (581)
+..+.+.|+.-|---..+..=.+=+++.-.+.+.||.||.++|||-|.|+
T Consensus 42 ~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl~~kD~~L~~ri 91 (97)
T PLN00160 42 AYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTIMPKDMQLARRI 91 (97)
T ss_pred CcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccccchhhHHHHHHh
Confidence 37788888887764444333333446777889999999999999999774
No 98
>PLN00163 histone H4; Provisional
Probab=39.96 E-value=12 Score=30.99 Aligned_cols=42 Identities=48% Similarity=0.794 Sum_probs=26.6
Q ss_pred CCCCCCCCCC----CCCCC---CCCcccCcccchhHHHHHHhcCCcccccCC
Q psy3827 1 MSGRGKGGKA----KAKSK---TRSSRAGLQFPVGRIHRLLRKGNYAERVGA 45 (581)
Q Consensus 1 Msg~gk~gk~----~~k~~---SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~ 45 (581)
|+|+||+||. ..|.. -+.+-.|++=| -|.|+-+.+.. .||+.
T Consensus 1 m~g~gkggkglGkggaKRhrk~lrd~i~gItKp--aIrRLARRgGV-KRIs~ 49 (59)
T PLN00163 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKP--AIRRLARRGGV-KRISG 49 (59)
T ss_pred CCCCCCCCCccCCccchhHHHHHHHhhcccchH--HHHHHHHhcCc-eeecc
Confidence 8999887653 12222 23344676666 58999998765 47765
No 99
>KOG0869|consensus
Probab=39.88 E-value=40 Score=33.14 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=50.8
Q ss_pred hhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHH
Q psy3827 506 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 575 (581)
Q Consensus 506 lLI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~r 575 (581)
.++|-+.-.|+.+.++ ..+-.+..+|=+.+||.+-.|+-=+--.++--..--||-||+-.||-.|+-
T Consensus 31 r~LPIANV~RIMK~~l---P~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~ 97 (168)
T KOG0869|consen 31 RFLPIANVSRIMKKAL---PANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMS 97 (168)
T ss_pred hhccHHHHHHHHHhcC---CcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHH
Confidence 3455555556555443 467899999999999999888877766665555667999999999988864
No 100
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=39.53 E-value=97 Score=25.96 Aligned_cols=48 Identities=13% Similarity=0.293 Sum_probs=44.0
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHH
Q psy3827 257 TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304 (581)
Q Consensus 257 ~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 304 (581)
.+++..|++.+..++.+.+..|+..+...+...+|...+..||..|..
T Consensus 22 ~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~ 69 (77)
T PF07524_consen 22 DSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALE 69 (77)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 467889999999999999999999999999999999999999998865
No 101
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are
Probab=39.39 E-value=32 Score=34.43 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=49.9
Q ss_pred hhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCe
Q psy3827 505 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 562 (581)
Q Consensus 505 ~lLI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKR 562 (581)
..++...|+.+.++.|+.+.+.. .+..+.+..|-.|+|.||-+|.+.+..++-|...
T Consensus 42 ~~fl~~~~l~~~~~~i~~~~g~~-~~~~d~~~lis~a~e~rlr~li~k~~~~s~hR~~ 98 (212)
T cd08045 42 PSFLNPSPLAKKIRKIAKKHGLK-EVDEDVLDLISLALEERLRNLLEKLIEVSEHRVD 98 (212)
T ss_pred hhccCHHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 35778889999999999976543 8899999999999999999999999999999643
No 102
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=39.02 E-value=73 Score=28.36 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhh--hCCcccchhhHHHHHhccHH
Q psy3827 56 EYLAAEVLELAGNAARD--NKKTRIIPRHLQLAIRNDEE 92 (581)
Q Consensus 56 EYLtaEILELAgn~A~~--~kkkrItP~hL~lAI~nDeE 92 (581)
|+++..|.++.-+++.- .++.+|+++++..++++|+.
T Consensus 31 ~iv~~~i~~l~~~a~~~A~~r~~k~~~eD~~FliR~D~~ 69 (92)
T cd07978 31 DIVVEYIIELCHKAAEVAQRRRGKVKVEDLIFLLRKDPK 69 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCHH
Confidence 33444455554443332 46788899999999999975
No 103
>PF15214 PXT1: Peroxisomal testis-specific protein 1
Probab=38.15 E-value=15 Score=29.37 Aligned_cols=17 Identities=24% Similarity=0.642 Sum_probs=15.5
Q ss_pred ccCCCCCchhhHHhhhh
Q psy3827 137 GVGDGVADHVLEEHLEN 153 (581)
Q Consensus 137 ~vg~~~~~~~~~~~~~~ 153 (581)
.+||||...+.|||||.
T Consensus 5 ~iGDsinhR~vqE~lqq 21 (51)
T PF15214_consen 5 HIGDSINHRMVQEDLQQ 21 (51)
T ss_pred cccccccHHHHHHHHHH
Confidence 48999999999999985
No 104
>PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site. Transcription factor TFIID is one of the general factors involved in this process. Yeast TFIID comprises the TATA binding protein and 14 TBP-associated factors (TAFIIs), nine of which contain histone-fold domains (IPR007124 from INTERPRO). The C-terminal region of the TFIID-specific yeast TAF4 (yTAF4) containing the HFD shares strong sequence similarity with Drosophila (d)TAF4 and human TAF4. A structure/function analysis of yTAF4 demonstrates that the HFD, a short conserved C-terminal domain (CCTD), and the region separating them are all required for yTAF4 function. This region of similarity is found in Transcription initiation factor TFIID component TAF4 []. ; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_C.
Probab=35.75 E-value=21 Score=36.80 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=38.8
Q ss_pred hhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCee
Q psy3827 505 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRV 563 (581)
Q Consensus 505 ~lLI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRV 563 (581)
++++...|+++.+++|+..+. ...+..+.+..|=-|+|.+|-+|.|++..++.|....
T Consensus 41 ~~fL~~~~L~~~i~~i~~~~g-~~~~~~d~l~llS~A~e~rLr~lie~~~~~s~hR~~~ 98 (264)
T PF05236_consen 41 EPFLNPSPLQKRIQKIAKKHG-LKSVDEDVLELLSLATEERLRNLIEKAIVLSRHRRDS 98 (264)
T ss_dssp ---S-HHHHHHHHHHHHHCTT---EE-TCHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred ccccCHHHHHHHHHHHHHHcC-CcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 356778889999999997665 5678899999999999999999999999999996554
No 105
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=33.23 E-value=48 Score=29.37 Aligned_cols=47 Identities=11% Similarity=0.221 Sum_probs=23.2
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHH
Q psy3827 258 GVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304 (581)
Q Consensus 258 gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 304 (581)
--..++..+|..+|.+-.--+..+|..+|...++..|+..|+--++|
T Consensus 19 ~P~~eTv~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR 65 (93)
T PF02269_consen 19 EPLPETVDLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLR 65 (93)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHh
Confidence 34578899999999999999999999999999999999999988877
No 106
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=30.61 E-value=52 Score=35.83 Aligned_cols=66 Identities=26% Similarity=0.368 Sum_probs=53.7
Q ss_pred ceeEeeeeecccccCCCCcchhhHHHHHHHHHHHHHH---HHHHHhhhhhccCCcccchhHHHHHHHhh
Q psy3827 241 SYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFER---IAAESSRLAHYNKRSTITSREIQTAVRLL 306 (581)
Q Consensus 241 sy~~YiykVLKQVhpd~gISskam~imnsfvnDifer---IA~EAs~La~~nkr~TitsreIqtAvrLl 306 (581)
||.++-...+|.|..-.||+.=+=+.+..+..|+=-| |..||++....+||.-+|..||-.|.|-+
T Consensus 2 s~t~ws~et~KdvAeslGi~Ni~Dd~l~alamDlEYRI~ev~qea~KFmvhSKRtvLt~dDis~ALr~l 70 (450)
T COG5095 2 SLTLWSKETLKDVAESLGISNIDDDALRALAMDLEYRIKEVCQEASKFMVHSKRTVLTIDDISYALRSL 70 (450)
T ss_pred ceeeecHHHHHHHHHHcCCcccccHHHHHHHHhHHHHHHHHHHHHHHHhhcccceeeeHHhHHHHHHhc
Confidence 4555556678888888999987766677777776544 57899999999999999999999999865
No 107
>KOG1658|consensus
Probab=29.61 E-value=31 Score=33.76 Aligned_cols=64 Identities=22% Similarity=0.372 Sum_probs=0.0
Q ss_pred hccCchhHHHHHHHhhccccccccHHHHHH-HHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHH
Q psy3827 508 IRKLPFQRLVREIAQDFKTDLRFQSSAVMA-LQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 573 (581)
Q Consensus 508 I~K~pF~RLVrEI~~~~~~~~Rfq~~Al~a-LQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa 573 (581)
+.++|.+| |++|.. ..+|++|-...+.. +-.|+|-|+-.|=..++.|+.-.||+|+.-+|+-.+
T Consensus 57 l~rLpL~r-ik~vvk-l~pdl~l~~dea~~l~a~aaelfi~~Ln~~~~~~~q~~k~kt~qr~d~D~a 121 (162)
T KOG1658|consen 57 LSRLPLAR-IKQVVK-LDPDLTLLNDEASQLIAKAAELFIQELNDVAYTTAQLRKRKTEQRRDYDTA 121 (162)
T ss_pred hhhccHHH-HHhhcc-CCcchhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhhhhccccc
No 108
>PF08366 LLGL: LLGL2; InterPro: IPR013577 This domain is found in lethal giant larvae homologue 2 (LLGL2) proteins and syntaxin-binding proteins like tomosyn []. It has been identified in eukaryotes and tends to be found together with WD repeats (IPR001680 from INTERPRO).
Probab=28.91 E-value=15 Score=33.71 Aligned_cols=75 Identities=20% Similarity=0.141 Sum_probs=56.2
Q ss_pred hhcchhhcccccchhhhhhhhhchhhhhhhccccc----ccccccCcCcCCCCChhhhhheeeEeeccceeeccCCcceE
Q psy3827 318 EGTKAVTKYTSSKCRAKTKQEEGALGFLFGLLGQE----HGLDVGQNSSLGDGDAGQELVQLFVVADGQLQVTGDDTGLL 393 (581)
Q Consensus 318 eGtkAVtky~ssk~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 393 (581)
+-.||++|..- ...+.-+.++.|..|+.+-+ |++-|-++.+..=.++....+.+++|.+.--.-..+|+..|
T Consensus 11 ~pCk~I~Ki~w----~~~~~~~~~iiFsGGmp~~~ygdr~~vTV~~g~~~~~ldf~s~VIDF~~i~~~~~~~e~~~P~al 86 (105)
T PF08366_consen 11 FPCKAINKILW----RTSRNGEPFIIFSGGMPRASYGDRHCVTVMQGKTHVVLDFTSRVIDFFTICESPWPNEFQDPYAL 86 (105)
T ss_pred CCCceeeEEEE----EecCCCCcEEEEeCCccccccCCCceEEEEeCCEEEEEEcCCceEEEEEEcCCCCccccCCCcEE
Confidence 34577777631 11234456899999997764 67888888888778889999999999998766677788888
Q ss_pred EEe
Q psy3827 394 VVT 396 (581)
Q Consensus 394 v~~ 396 (581)
||=
T Consensus 87 vVL 89 (105)
T PF08366_consen 87 VVL 89 (105)
T ss_pred EEE
Confidence 874
No 109
>KOG2549|consensus
Probab=28.29 E-value=53 Score=37.95 Aligned_cols=62 Identities=21% Similarity=0.295 Sum_probs=50.7
Q ss_pred HHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhc
Q psy3827 516 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 578 (581)
Q Consensus 516 LVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg 578 (581)
-++-+++..+ --.+..+|..+|-+=.|.-+-.+-+|+..++.|+||-+++..|+.-|.|.+.
T Consensus 16 s~k~vAEslG-i~nl~deaa~~La~dv~yrikEI~Q~aaKfm~hskR~kLtv~DV~~ALr~~n 77 (576)
T KOG2549|consen 16 SVKVVAESLG-ITNLNDEAALLLAEDVEYRIKEIVQDAAKFMVHSKRTKLTVDDVDYALRSLN 77 (576)
T ss_pred HHHHHHHHhC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHhhcc
Confidence 3444555432 2347788999998889988999999999999999999999999999998874
No 110
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=27.72 E-value=1e+02 Score=29.51 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhc
Q psy3827 49 VYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (581)
Q Consensus 49 VyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~n 89 (581)
++.-+++||+..=-+| |..+|.+..++-|.|+|+-.|..|
T Consensus 38 i~in~cieFi~~lsse-Ane~ce~EaKKTIa~EHviKALen 77 (148)
T COG5150 38 IFINACIEFINMLSSE-ANEACEEEAKKTIAYEHVIKALEN 77 (148)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhccccHHHHHHHHHh
No 111
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=25.11 E-value=1.8e+02 Score=25.85 Aligned_cols=45 Identities=9% Similarity=0.294 Sum_probs=38.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHH
Q psy3827 259 VSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304 (581)
Q Consensus 259 ISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 304 (581)
-..++..+|..+|.+..-.|..+|..+|. .++.-++..|+--++|
T Consensus 21 P~~eTv~llE~iv~~~i~~l~~~a~~~A~-~r~~k~~~eD~~FliR 65 (92)
T cd07978 21 PLPETVDLLEDIVVEYIIELCHKAAEVAQ-RRRGKVKVEDLIFLLR 65 (92)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHh
Confidence 35678999999999999999999999998 5566669999998876
No 112
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=23.43 E-value=1.4e+02 Score=26.20 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=44.3
Q ss_pred cccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCC---cccchhHHHHHHHhh
Q psy3827 250 LKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKR---STITSREIQTAVRLL 306 (581)
Q Consensus 250 LKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr---~TitsreIqtAvrLl 306 (581)
..++-. ..++.....+|..+-.-+.-.|.++|..+..-... ..|.++.|+.|.|.+
T Consensus 26 ~~~~~~-~~v~~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~rrl 84 (85)
T cd08048 26 IQSVTG-QSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYRRL 84 (85)
T ss_pred HHHHcC-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHh
Confidence 444433 67788888888887777778889999998876555 789999999999976
No 113
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=22.93 E-value=2.1e+02 Score=27.20 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=36.9
Q ss_pred CCCcc---hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHhhC
Q psy3827 256 DTGVS---SKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLL 307 (581)
Q Consensus 256 d~gIS---skam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlL 307 (581)
+.||+ .+....|--|+.--...|-.+|...+.+.++.+|+..||+.|+...+
T Consensus 24 ~~Gv~~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~~r~ 78 (129)
T PF02291_consen 24 SMGVTEYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQSRL 78 (129)
T ss_dssp HTT---B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHHHT-
T ss_pred HcCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHH
Confidence 34554 45555566666666677788999999999999999999999988653
No 114
>COG5094 TAF9 Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=22.85 E-value=1.1e+02 Score=29.10 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCc---ccHHHHHHHh
Q psy3827 533 SAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMP---KDIQLARRIR 577 (581)
Q Consensus 533 ~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~---kDiqLa~rIr 577 (581)
....-|-|-|--|-.+++||+...|-|+.|-.+.+ .|+.||.--+
T Consensus 35 ~VplQLl~FAhRYTq~vl~Dalvya~htgrg~~a~l~veDvrLA~at~ 82 (145)
T COG5094 35 KVPLQLLEFAHRYTQDVLEDALVYAKHTGRGHIATLGVEDVRLALATK 82 (145)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHHHHHHH
Confidence 33444557778899999999999999998876666 9999987543
No 115
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=20.59 E-value=84 Score=27.50 Aligned_cols=60 Identities=25% Similarity=0.440 Sum_probs=46.5
Q ss_pred hhhhhhcccchhhhhccCchhHHHHHHHhh-ccccccccHHHHHHHHHH--HHhhhhccchhhhhh
Q psy3827 494 LREIRRYQKSTELLIRKLPFQRLVREIAQD-FKTDLRFQSSAVMALQEA--SEAYLVGLFEDTNLC 556 (581)
Q Consensus 494 lrEIR~yQkst~lLI~K~pF~RLVrEI~~~-~~~~~Rfq~~Al~aLQeA--aEayLv~lFEda~lc 556 (581)
|++|.+|+...+ =||-.| |.+.|-++- |+.++-.++..+.+|+.+ +|+|+-++.+..+.|
T Consensus 2 L~~I~h~l~np~-DiP~ip--ra~aeyLqvrfN~~yl~~sG~i~~lr~~G~SE~~I~Gfl~Gl~~A 64 (77)
T PF10911_consen 2 LKPIQHLLDNPD-DIPDIP--RAAAEYLQVRFNAAYLMASGIISALRKQGWSESYILGFLAGLQYA 64 (77)
T ss_pred cchHHHHhcCCc-ccCCcc--HHHHHHHHHHhcHHHHHHhhhHHHHHHccccHHHHHHHHHHHHHH
Confidence 678888888763 245444 667777664 678888889999999865 899999999998877
Done!