Query psy3827
Match_columns 581
No_of_seqs 497 out of 1323
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 18:22:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_C Histone H3; histone-fol 100.0 3.3E-53 1.1E-57 389.5 3.5 136 446-581 1-136 (136)
2 1tzy_B Histone H2B; histone-fo 100.0 1.8E-50 6.1E-55 365.3 4.2 119 206-330 8-126 (126)
3 2nqb_D Histone H2B; nucleosome 100.0 6.7E-50 2.3E-54 360.3 4.3 102 229-330 22-123 (123)
4 3r45_A Histone H3-like centrom 100.0 2.1E-43 7E-48 329.3 3.3 114 465-580 36-152 (156)
5 2yfv_A Histone H3-like centrom 100.0 4.8E-43 1.7E-47 307.5 3.9 96 482-577 2-100 (100)
6 3nqu_A Histone H3-like centrom 100.0 1.2E-42 4.2E-47 320.0 4.9 111 468-580 23-136 (140)
7 2f8n_G Core histone macro-H2A. 100.0 6.7E-40 2.3E-44 296.2 8.6 113 1-115 1-113 (120)
8 1tzy_A Histone H2A-IV; histone 100.0 9.8E-40 3.3E-44 298.4 8.9 115 1-115 1-116 (129)
9 2nqb_C Histone H2A; nucleosome 100.0 1E-39 3.6E-44 296.0 9.0 114 2-115 1-114 (123)
10 2f8n_K Histone H2A type 1; nuc 100.0 4.7E-39 1.6E-43 299.7 9.2 115 1-115 20-135 (149)
11 1id3_C Histone H2A.1; nucleoso 100.0 6.5E-38 2.2E-42 287.0 11.5 111 5-115 6-116 (131)
12 1f66_C Histone H2A.Z; nucleoso 100.0 1.6E-37 5.5E-42 283.4 9.0 114 1-115 1-118 (128)
13 2jss_A Chimera of histone H2B. 100.0 1.4E-33 4.7E-38 272.8 4.1 111 238-349 1-111 (192)
14 2hue_B Histone H3; mini beta s 100.0 5.6E-33 1.9E-37 233.3 4.7 77 505-581 1-77 (77)
15 3nqj_A Histone H3-like centrom 100.0 7.2E-33 2.5E-37 235.1 3.9 75 506-580 2-78 (82)
16 2jss_A Chimera of histone H2B. 100.0 3.3E-31 1.1E-35 256.2 10.1 98 13-111 94-192 (192)
17 2l5a_A Histone H3-like centrom 100.0 1.6E-30 5.6E-35 256.4 5.2 77 504-580 8-87 (235)
18 2ly8_A Budding yeast chaperone 99.9 5.4E-23 1.9E-27 185.8 5.5 73 507-579 1-114 (121)
19 3ksy_A SOS-1, SON of sevenless 99.9 1.6E-22 5.5E-27 235.5 6.0 100 13-114 93-192 (1049)
20 1jfi_A Transcription regulator 99.7 2.3E-18 8E-23 150.3 6.1 83 16-98 3-85 (98)
21 1b67_A Protein (histone HMFA); 99.6 7.1E-17 2.4E-21 131.4 3.0 63 508-575 3-65 (68)
22 1n1j_B NF-YC; histone-like PAI 99.5 2.9E-14 1E-18 124.1 8.0 79 20-98 15-93 (97)
23 4g92_C HAPE; transcription fac 99.5 5.5E-14 1.9E-18 126.7 7.8 76 22-97 39-114 (119)
24 2yfw_B Histone H4, H4; cell cy 99.5 8.8E-14 3E-18 122.4 7.3 89 1-92 1-96 (103)
25 1tzy_D Histone H4-VI; histone- 99.4 1.5E-13 5.3E-18 120.8 7.7 88 1-91 1-95 (103)
26 1ku5_A HPHA, archaeal histon; 99.4 1.6E-13 5.4E-18 112.5 3.3 64 507-575 6-69 (70)
27 3b0c_W CENP-W, centromere prot 99.3 4.7E-13 1.6E-17 111.6 3.2 64 245-308 9-72 (76)
28 2byk_A Chrac-16; nucleosome sl 99.3 8.1E-13 2.8E-17 122.3 4.9 85 13-97 8-93 (140)
29 1n1j_A NF-YB; histone-like PAI 99.2 5.6E-12 1.9E-16 108.6 2.7 71 502-575 3-73 (93)
30 1f1e_A Histone fold protein; a 99.1 5.1E-10 1.7E-14 105.1 11.4 146 24-309 4-150 (154)
31 1f1e_A Histone fold protein; a 98.8 5.5E-09 1.9E-13 98.1 6.2 71 19-90 77-147 (154)
32 2nqb_D Histone H2B; nucleosome 98.5 8.2E-08 2.8E-12 87.0 4.9 64 509-576 31-98 (123)
33 1tzy_B Histone H2B; histone-fo 98.5 8E-08 2.8E-12 87.3 4.8 64 509-576 34-101 (126)
34 1b67_A Protein (histone HMFA); 98.2 2.5E-06 8.5E-11 69.1 6.3 65 24-89 2-66 (68)
35 1id3_B Histone H4; nucleosome 98.1 5.5E-06 1.9E-10 72.8 7.8 86 2-90 1-93 (102)
36 1ku5_A HPHA, archaeal histon; 98.1 4.1E-06 1.4E-10 68.4 6.2 65 24-89 6-70 (70)
37 2r10_A Chromatin structure-rem 98.0 7.1E-07 2.4E-11 93.4 0.6 50 448-497 3-52 (361)
38 1tzy_D Histone H4-VI; histone- 98.0 2.5E-06 8.7E-11 74.9 3.7 70 505-579 27-96 (103)
39 2yfw_B Histone H4, H4; cell cy 98.0 2.4E-06 8E-11 75.1 2.9 69 506-579 28-96 (103)
40 1id3_B Histone H4; nucleosome 97.9 4E-06 1.4E-10 73.7 3.4 70 505-579 26-95 (102)
41 2hue_C Histone H4; mini beta s 97.8 5E-06 1.7E-10 70.5 1.9 69 506-579 9-77 (84)
42 3b0c_W CENP-W, centromere prot 97.8 7.8E-06 2.7E-10 68.0 2.3 66 507-576 4-69 (76)
43 3b0c_T CENP-T, centromere prot 97.7 2.7E-05 9.2E-10 69.4 4.4 70 505-579 5-74 (111)
44 1taf_A TFIID TBP associated fa 97.5 0.00011 3.7E-09 60.4 4.9 62 515-577 5-66 (68)
45 1n1j_A NF-YB; histone-like PAI 97.5 0.0002 6.9E-09 61.4 6.7 68 21-88 5-73 (93)
46 3v9r_A MHF1, uncharacterized p 97.3 0.00011 3.6E-09 63.6 3.5 66 510-575 11-78 (90)
47 4dra_A Centromere protein S; D 97.3 0.00014 4.7E-09 65.2 4.2 60 514-575 34-93 (113)
48 4g92_C HAPE; transcription fac 97.3 0.00023 7.9E-09 64.0 4.8 69 506-575 37-105 (119)
49 3b0b_B CENP-S, centromere prot 97.3 0.00012 4E-09 65.1 2.8 64 512-575 20-85 (107)
50 1n1j_B NF-YC; histone-like PAI 97.2 0.00026 8.7E-09 61.4 4.7 80 494-575 4-83 (97)
51 2byk_B Chrac-14; nucleosome sl 97.2 0.00024 8.1E-09 64.8 4.3 70 504-576 6-75 (128)
52 1jfi_B DR1 protein, transcript 97.1 0.00021 7.3E-09 68.6 3.3 70 502-575 10-79 (179)
53 3vh5_A CENP-S; histone fold, c 97.1 0.00023 8E-09 65.8 3.4 64 512-575 20-85 (140)
54 2byk_B Chrac-14; nucleosome sl 97.1 0.00046 1.6E-08 62.9 5.1 70 22-91 7-77 (128)
55 1taf_B TFIID TBP associated fa 97.1 0.00045 1.5E-08 57.1 4.2 64 508-576 7-70 (70)
56 2hue_C Histone H4; mini beta s 96.9 0.002 6.9E-08 54.4 7.3 71 17-90 5-75 (84)
57 2x4w_B Histone H3.2; transcrip 96.4 0.0011 3.7E-08 44.0 1.6 24 470-493 3-26 (26)
58 1taf_B TFIID TBP associated fa 96.3 0.0085 2.9E-07 49.5 6.6 65 23-88 5-69 (70)
59 3b0c_T CENP-T, centromere prot 96.1 0.0036 1.2E-07 55.7 3.9 59 246-305 13-71 (111)
60 1h3o_B Transcription initiatio 96.0 0.005 1.7E-07 51.6 4.1 65 507-575 5-69 (76)
61 1jfi_A Transcription regulator 96.0 0.0021 7.1E-08 55.9 1.6 66 509-575 10-75 (98)
62 1jfi_B DR1 protein, transcript 95.8 0.013 4.4E-07 56.3 6.4 79 18-97 9-87 (179)
63 2nqb_C Histone H2A; nucleosome 95.5 0.01 3.5E-07 53.7 4.3 60 245-304 28-87 (123)
64 2f8n_G Core histone macro-H2A. 95.5 0.01 3.5E-07 53.5 4.1 60 245-304 27-86 (120)
65 1id3_C Histone H2A.1; nucleoso 95.4 0.011 3.8E-07 54.0 4.1 60 245-304 30-89 (131)
66 2byk_A Chrac-16; nucleosome sl 95.3 0.01 3.4E-07 54.9 3.7 66 509-575 18-84 (140)
67 1tzy_A Histone H2A-IV; histone 95.3 0.013 4.5E-07 53.5 4.2 60 245-304 30-89 (129)
68 1h3o_B Transcription initiatio 95.1 0.032 1.1E-06 46.7 5.7 58 247-304 12-69 (76)
69 2f8n_K Histone H2A type 1; nuc 95.1 0.016 5.4E-07 54.2 4.1 60 245-304 49-108 (149)
70 1taf_A TFIID TBP associated fa 95.0 0.052 1.8E-06 44.5 6.7 60 29-89 6-65 (68)
71 4dra_A Centromere protein S; D 94.4 0.043 1.5E-06 49.2 5.1 59 246-304 33-93 (113)
72 3v9r_A MHF1, uncharacterized p 94.2 0.055 1.9E-06 46.6 5.1 48 257-304 31-78 (90)
73 3b0b_B CENP-S, centromere prot 94.0 0.048 1.7E-06 48.4 4.5 50 256-305 37-86 (107)
74 1f66_C Histone H2A.Z; nucleoso 93.9 0.057 1.9E-06 49.2 4.9 68 505-575 25-92 (128)
75 3vh5_A CENP-S; histone fold, c 93.7 0.068 2.3E-06 49.5 5.0 50 256-305 37-86 (140)
76 2ly8_A Budding yeast chaperone 93.1 0.12 4.1E-06 46.8 5.6 49 257-305 63-111 (121)
77 2l5a_A Histone H3-like centrom 92.7 0.052 1.8E-06 54.1 2.9 53 527-579 176-228 (235)
78 2hue_B Histone H3; mini beta s 92.1 0.087 3E-06 44.2 3.1 52 254-305 21-72 (77)
79 3ksy_A SOS-1, SON of sevenless 89.8 0.27 9.2E-06 57.9 5.3 75 240-324 21-95 (1049)
80 3nqj_A Histone H3-like centrom 89.8 0.47 1.6E-05 40.2 5.4 64 25-88 4-73 (82)
81 3r45_A Histone H3-like centrom 88.3 0.46 1.6E-05 44.7 4.7 69 21-89 74-148 (156)
82 3nqu_A Histone H3-like centrom 87.9 0.57 1.9E-05 43.4 5.0 68 21-88 58-131 (140)
83 2yfv_A Histone H3-like centrom 86.5 0.77 2.6E-05 40.2 4.8 68 21-88 24-98 (100)
84 1tzy_C Histone H3; histone-fol 86.3 1 3.5E-05 41.5 5.8 68 21-88 59-130 (136)
85 1bh9_B TAFII28; histone fold, 86.0 1.2 4E-05 38.2 5.7 65 24-89 16-81 (89)
86 4dra_E Centromere protein X; D 82.3 3.3 0.00011 35.3 6.7 67 20-86 8-76 (84)
87 3b0b_C CENP-X, centromere prot 81.6 2.2 7.5E-05 36.0 5.4 65 22-86 6-72 (81)
88 3avr_B Histone H3; cupin super 80.9 0.63 2.2E-05 30.7 1.5 25 463-487 1-25 (26)
89 3a1b_A DNA (cytosine-5)-methyl 78.9 0.43 1.5E-05 45.0 0.2 21 447-467 1-21 (159)
90 1k6k_A ATP-dependent CLP prote 63.7 6.6 0.00022 34.3 4.3 41 59-99 6-46 (143)
91 1khy_A CLPB protein; alpha hel 53.0 12 0.0004 32.8 4.0 33 60-92 11-43 (148)
92 3fes_A ATP-dependent CLP endop 50.0 8.9 0.0003 34.1 2.7 33 59-91 12-44 (145)
93 2y1q_A CLPC N-domain, negative 48.3 10 0.00035 33.3 2.9 33 60-92 11-43 (150)
94 3fh2_A Probable ATP-dependent 48.3 10 0.00035 33.6 2.9 31 60-90 12-42 (146)
95 3fes_A ATP-dependent CLP endop 41.8 16 0.00054 32.4 3.0 40 59-98 86-127 (145)
96 3zri_A CLPB protein, CLPV; cha 41.4 19 0.00067 33.4 3.7 44 49-92 16-62 (171)
97 3fh2_A Probable ATP-dependent 40.5 20 0.0007 31.6 3.6 39 60-98 87-127 (146)
98 2k3y_A Chromatin modification- 37.7 12 0.0004 34.5 1.5 25 464-488 111-136 (136)
99 3zri_A CLPB protein, CLPV; cha 33.1 38 0.0013 31.4 4.3 32 60-91 104-136 (171)
100 1khy_A CLPB protein; alpha hel 32.9 49 0.0017 28.7 4.8 40 59-98 87-127 (148)
101 1k6k_A ATP-dependent CLP prote 32.7 34 0.0012 29.6 3.7 40 59-98 84-125 (143)
102 1bh9_B TAFII28; histone fold, 27.2 73 0.0025 27.1 4.6 58 249-307 25-83 (89)
103 2y1q_A CLPC N-domain, negative 26.9 37 0.0013 29.7 2.9 33 59-91 84-116 (150)
104 3aji_B S6C, proteasome (prosom 21.8 1.1E+02 0.0036 24.4 4.5 35 275-309 40-74 (83)
105 1r6b_X CLPA protein; AAA+, N-t 20.6 72 0.0025 35.5 4.3 40 59-98 6-45 (758)
106 1wwi_A Hypothetical protein TT 20.4 1.5E+02 0.0051 27.6 5.6 61 24-85 2-62 (148)
No 1
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=100.00 E-value=3.3e-53 Score=389.54 Aligned_cols=136 Identities=100% Similarity=1.353 Sum_probs=93.8
Q ss_pred CccccccccCCCCCCCCccchhhhhhcccCCCCCCCCCCccCCCCcchhhhhhhcccchhhhhccCchhHHHHHHHhhcc
Q psy3827 446 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 525 (581)
Q Consensus 446 MARtKqtArkstggkaPrK~la~k~arks~p~~~~~kk~~r~rpgt~alrEIR~yQkst~lLI~K~pF~RLVrEI~~~~~ 525 (581)
||||||+|++++||++|+|++++++++|++|..++.++|||||||++||+|||+||+||+|||||+||+||||||+++|.
T Consensus 1 MARtk~tarkstggkaprk~l~~k~a~k~~p~~~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RLVREI~~~~~ 80 (136)
T 1tzy_C 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
T ss_dssp -----------------------------------------CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHC
T ss_pred CCCCccccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCchhHHHHHHHhhcchhhhhccchHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhccCC
Q psy3827 526 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 581 (581)
Q Consensus 526 ~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~~~ 581 (581)
+++|||++||.|||||+|+|||+||||+|+||+||||||||++|||||+||||+++
T Consensus 81 ~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~~ 136 (136)
T 1tzy_C 81 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136 (136)
T ss_dssp TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCCC
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999874
No 2
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=100.00 E-value=1.8e-50 Score=365.35 Aligned_cols=119 Identities=84% Similarity=1.109 Sum_probs=91.4
Q ss_pred ccccCCCCcchhhhhhcccccccccccccccccccceeEeeeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhh
Q psy3827 206 TTAAGKSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRL 285 (581)
Q Consensus 206 s~~~~k~~~k~~~ka~k~~~~~~~~~kk~k~~r~esy~~YiykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~L 285 (581)
+++|+++++++++++++ ++++||+++++|+|++||||||||||||+|||++||+||||||||||||||.||++|
T Consensus 8 ~~~~~~~~~~~~~~~~~------~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~L 81 (126)
T 1tzy_B 8 APAPKKGSKKAVTKTQK------KGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRL 81 (126)
T ss_dssp --------------------------------CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccchhhccccccc------CCCCCccccccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666665555543 556777888999999999999999999999999999999999999999999999999
Q ss_pred hhccCCcccchhHHHHHHHhhCchHHhhhhhhhhcchhhcccccc
Q psy3827 286 AHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 330 (581)
Q Consensus 286 a~~nkr~TitsreIqtAvrLlLPgeLaKhAvseGtkAVtky~ssk 330 (581)
++||+|+|||+|||||||||||||||+||||+||||||+||++++
T Consensus 82 a~~nkr~TitsreIqtAvrLlLpGELaKhAvseGtkAV~ky~ssk 126 (126)
T 1tzy_B 82 AHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126 (126)
T ss_dssp HHHTTCSEECHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHcCCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHHhcccCCC
Confidence 999999999999999999999999999999999999999999874
No 3
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=100.00 E-value=6.7e-50 Score=360.32 Aligned_cols=102 Identities=94% Similarity=1.246 Sum_probs=93.6
Q ss_pred ccccccccccccceeEeeeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHhhCc
Q psy3827 229 KSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 308 (581)
Q Consensus 229 ~~~kk~k~~r~esy~~YiykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLP 308 (581)
++++|++++++|+|++||||||||||||+|||++||+||||||||||||||.||++|++||+|+|||+||||+|||||||
T Consensus 22 ~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLp 101 (123)
T 2nqb_D 22 KTDKKKKRKRKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLP 101 (123)
T ss_dssp -------CCCCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSC
T ss_pred CCCCCCCccccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCc
Confidence 55677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhhhhhcchhhcccccc
Q psy3827 309 GELAKHAVSEGTKAVTKYTSSK 330 (581)
Q Consensus 309 geLaKhAvseGtkAVtky~ssk 330 (581)
|||+||||+||||||++|++++
T Consensus 102 GELaKhAvseGtkAV~ky~ss~ 123 (123)
T 2nqb_D 102 GELAKHAVSEGTKAVTKYTSSK 123 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhcccCCC
Confidence 9999999999999999999874
No 4
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.1e-43 Score=329.25 Aligned_cols=114 Identities=54% Similarity=0.816 Sum_probs=74.2
Q ss_pred chhhhhhcccCCCCCCCCCC-ccCCCCcchhhhhhhcccchhhhhccCchhHHHHHHHhhcc--ccccccHHHHHHHHHH
Q psy3827 465 QLATKAARKSAPATGGVKKP-HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEA 541 (581)
Q Consensus 465 ~la~k~arks~p~~~~~kk~-~r~rpgt~alrEIR~yQkst~lLI~K~pF~RLVrEI~~~~~--~~~Rfq~~Al~aLQeA 541 (581)
+-++++++|++|..|+++++ +|||||+ |+|||+|||||+|||||+||+||||||+++|+ .++|||++||+|||||
T Consensus 36 ~~~~~aa~ksap~~g~~~~~~~r~rpg~--LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEA 113 (156)
T 3r45_A 36 PTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEA 113 (156)
T ss_dssp -----------------------------------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCch--HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHH
Confidence 33677889999999888766 7899998 99999999999999999999999999999998 5899999999999999
Q ss_pred HHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhccC
Q psy3827 542 SEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 580 (581)
Q Consensus 542 aEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~~ 580 (581)
+|+|||+||||+|+||+||||||||++|||||+||||++
T Consensus 114 aEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~~ 152 (156)
T 3r45_A 114 AEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 152 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHcccc
Confidence 999999999999999999999999999999999999974
No 5
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=100.00 E-value=4.8e-43 Score=307.47 Aligned_cols=96 Identities=66% Similarity=1.011 Sum_probs=67.3
Q ss_pred CCCccCCCCcchhhhhhhcccchhhhhccCchhHHHHHHHhhccc---cccccHHHHHHHHHHHHhhhhccchhhhhhhh
Q psy3827 482 KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAI 558 (581)
Q Consensus 482 kk~~r~rpgt~alrEIR~yQkst~lLI~K~pF~RLVrEI~~~~~~---~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~ 558 (581)
++|||||||++||+|||+||+||+|||||+||+||||||+++|.+ ++|||++|+.|||||+|+|||+||||+|+||+
T Consensus 2 ~~~~r~rpgt~alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~ 81 (100)
T 2yfv_A 2 ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLAL 81 (100)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcchHHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999987 89999999999999999999999999999999
Q ss_pred cCCeeeeCcccHHHHHHHh
Q psy3827 559 HAKRVTIMPKDIQLARRIR 577 (581)
Q Consensus 559 HaKRVTI~~kDiqLa~rIr 577 (581)
||||||||++|||||+|||
T Consensus 82 HAkRvTi~~kDiqLa~rir 100 (100)
T 2yfv_A 82 HAKRITIMRKDMQLARRIR 100 (100)
T ss_dssp HTTCSEECHHHHHHHHHCC
T ss_pred HcCCccCCHHHHHHHHHhC
Confidence 9999999999999999997
No 6
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=100.00 E-value=1.2e-42 Score=320.05 Aligned_cols=111 Identities=55% Similarity=0.842 Sum_probs=73.0
Q ss_pred hhhhcccCCCCCCCCCC-ccCCCCcchhhhhhhcccchhhhhccCchhHHHHHHHhhcc--ccccccHHHHHHHHHHHHh
Q psy3827 468 TKAARKSAPATGGVKKP-HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEA 544 (581)
Q Consensus 468 ~k~arks~p~~~~~kk~-~r~rpgt~alrEIR~yQkst~lLI~K~pF~RLVrEI~~~~~--~~~Rfq~~Al~aLQeAaEa 544 (581)
.+++++++|..++++++ +||+||+ |+|||+|||||+|||||+||+||||||+++|+ .++|||++||.|||||+|+
T Consensus 23 ~~aa~~~~~~~g~~~~~~~r~rpg~--LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEa 100 (140)
T 3nqu_A 23 TPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEA 100 (140)
T ss_dssp --------------------------------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCcc--HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHH
Confidence 35678888888877655 4899998 99999999999999999999999999999997 5899999999999999999
Q ss_pred hhhccchhhhhhhhcCCeeeeCcccHHHHHHHhccC
Q psy3827 545 YLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 580 (581)
Q Consensus 545 yLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~~ 580 (581)
|||+||||+|+||+||||||||++|||||+||||+.
T Consensus 101 yLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~~ 136 (140)
T 3nqu_A 101 FLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 136 (140)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHcCcccccHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999975
No 7
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=100.00 E-value=6.7e-40 Score=296.18 Aligned_cols=113 Identities=64% Similarity=1.004 Sum_probs=102.2
Q ss_pred CCCCCCCCCCCCCCCCCCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccch
Q psy3827 1 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIP 80 (581)
Q Consensus 1 Msg~gk~gk~~~k~~SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP 80 (581)
|||+| ||.+++++|||+||||||||+||+|+||+++|++||+++|||||+||||||++||||+|+|+|+++++++|+|
T Consensus 1 m~~~~--~~~~~~~~srs~ragLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp 78 (120)
T 2f8n_G 1 MSSRG--GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTP 78 (120)
T ss_dssp -----------CCCCCHHHHHTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred CCCCC--CCCCcCCcCcccccCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcH
Confidence 89876 7777788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhccHHHHhhhcCceecCCCcCCcccccc
Q psy3827 81 RHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGA 115 (581)
Q Consensus 81 ~hL~lAI~nDeEL~~Lf~~vtIa~GGVlP~Iv~~a 115 (581)
+||++||+||+||++||+++||++|||+||||+..
T Consensus 79 ~hi~lAI~nDeEL~~Ll~~vtia~ggv~p~i~~~l 113 (120)
T 2f8n_G 79 RHILLAVANDEELNQLLKGVTIASGGVLPNIHPEL 113 (120)
T ss_dssp HHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGG
T ss_pred HHHHHHHhcCHHHHHHhCCceECCCCcCCCcCHHH
Confidence 99999999999999999999999999999999973
No 8
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=100.00 E-value=9.8e-40 Score=298.37 Aligned_cols=115 Identities=90% Similarity=1.296 Sum_probs=101.6
Q ss_pred CCCCCC-CCCCCCCCCCCCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccc
Q psy3827 1 MSGRGK-GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRII 79 (581)
Q Consensus 1 Msg~gk-~gk~~~k~~SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrIt 79 (581)
|||+|| +||.+++++|+|+||||||||+||+|+|++++|++||+++|||||+||||||++||||+|+|+|+++++++|+
T Consensus 1 m~~~~~~~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krIt 80 (129)
T 1tzy_A 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 80 (129)
T ss_dssp -------------CCCCHHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCCCCCCCCCCCCCCCccccCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEc
Confidence 999997 7787888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhccHHHHhhhcCceecCCCcCCcccccc
Q psy3827 80 PRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGA 115 (581)
Q Consensus 80 P~hL~lAI~nDeEL~~Lf~~vtIa~GGVlP~Iv~~a 115 (581)
|+||++||+||+||++||+++||++|||+||||+..
T Consensus 81 p~hi~lAI~nDeEL~~L~~~vtIa~ggvlP~i~~~l 116 (129)
T 1tzy_A 81 PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVL 116 (129)
T ss_dssp HHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGG
T ss_pred HHHHHHHHhccHHHHHHhCCCeecCCCcCCCCCHHH
Confidence 999999999999999999999999999999999984
No 9
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=100.00 E-value=1e-39 Score=296.05 Aligned_cols=114 Identities=94% Similarity=1.321 Sum_probs=100.7
Q ss_pred CCCCCCCCCCCCCCCCCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchh
Q psy3827 2 SGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 81 (581)
Q Consensus 2 sg~gk~gk~~~k~~SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~ 81 (581)
||+||+||.+++++|||+||||||||+||+|+||+++|++||+++|||||+||||||++||||+|+|+|+++++++|+|+
T Consensus 1 ~~~~~~~~~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~ 80 (123)
T 2nqb_C 1 SGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 80 (123)
T ss_dssp ------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH
T ss_pred CCCCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHH
Confidence 68899999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhccHHHHhhhcCceecCCCcCCcccccc
Q psy3827 82 HLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGA 115 (581)
Q Consensus 82 hL~lAI~nDeEL~~Lf~~vtIa~GGVlP~Iv~~a 115 (581)
||++||+||+||++||+++||++|||+||||+..
T Consensus 81 hi~lAI~nDeEL~~Ll~~vtia~ggvlp~i~~~l 114 (123)
T 2nqb_C 81 HLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 114 (123)
T ss_dssp HHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGG
T ss_pred HHHHHHhccHHHHHHhcCceeCCCCcCCCccHHH
Confidence 9999999999999999999999999999999984
No 10
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=100.00 E-value=4.7e-39 Score=299.72 Aligned_cols=115 Identities=90% Similarity=1.274 Sum_probs=100.5
Q ss_pred CCCCCCC-CCCCCCCCCCCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccc
Q psy3827 1 MSGRGKG-GKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRII 79 (581)
Q Consensus 1 Msg~gk~-gk~~~k~~SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrIt 79 (581)
|||+||+ ||.+++.+|||+||||||||+||+|+||+++|++||+++|||||+||||||++||||+|+|+|+++++++|+
T Consensus 20 ~~~~~~~~~~~~~k~~srS~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrIt 99 (149)
T 2f8n_K 20 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 99 (149)
T ss_dssp --------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred cccCCCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCc
Confidence 8999876 777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhccHHHHhhhcCceecCCCcCCcccccc
Q psy3827 80 PRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGA 115 (581)
Q Consensus 80 P~hL~lAI~nDeEL~~Lf~~vtIa~GGVlP~Iv~~a 115 (581)
|+||++||+||+||++||+++||++|||+|+|++..
T Consensus 100 prhI~lAI~nDeEL~~Ll~~vtIa~gGVlP~i~~~l 135 (149)
T 2f8n_K 100 PRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVL 135 (149)
T ss_dssp HHHHHHHHHHSHHHHHHTTTEEETTCCCCCCCCGGG
T ss_pred HHHHHHHHhccHHHHHHhcCceEcCCCCCCCccHHH
Confidence 999999999999999999999999999999999874
No 11
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=100.00 E-value=6.5e-38 Score=287.03 Aligned_cols=111 Identities=77% Similarity=1.203 Sum_probs=99.6
Q ss_pred CCCCCCCCCCCCCCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHH
Q psy3827 5 GKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQ 84 (581)
Q Consensus 5 gk~gk~~~k~~SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~ 84 (581)
||++|.+++++|||+||||||||+||+|+||+++|++||+++|||||+||||||++||||+|+|+|+++++++|+|+||+
T Consensus 6 ~~~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~ 85 (131)
T 1id3_C 6 GKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQ 85 (131)
T ss_dssp ----------CCTTGGGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred CCCCCCCCCCCCccccCCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHH
Confidence 35667777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccHHHHhhhcCceecCCCcCCcccccc
Q psy3827 85 LAIRNDEELNKLLSGVTIAQGGVLPNIQAGA 115 (581)
Q Consensus 85 lAI~nDeEL~~Lf~~vtIa~GGVlP~Iv~~a 115 (581)
+||+||+||++||+++||++|||+||||+..
T Consensus 86 lAI~nDeEL~~Ll~~vtIa~ggvlP~i~~~l 116 (131)
T 1id3_C 86 LAIRNDDELNKLLGNVTIAQGGVLPNIHQNL 116 (131)
T ss_dssp HHHHTCHHHHHHTTTEEETTCCCCCCCCGGG
T ss_pred HHHhccHHHHHHhcCceecCCccCCCccHHH
Confidence 9999999999999999999999999999874
No 12
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=100.00 E-value=1.6e-37 Score=283.43 Aligned_cols=114 Identities=62% Similarity=0.927 Sum_probs=97.9
Q ss_pred CCCCC---CCCCCCCCCCCCCcccCcccchhHHHHHHhcCCcc-cccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCc
Q psy3827 1 MSGRG---KGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKT 76 (581)
Q Consensus 1 Msg~g---k~gk~~~k~~SrSsRAgLqFPVgRI~RlLk~~~ya-~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkk 76 (581)
|||.. ++++.+++++|||+||||||||+||+|+||+++|+ +||+++|||||+||||||++||||+|+|+|++++++
T Consensus 1 m~~~~~~~~~~~~~~~~~srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~k 80 (128)
T 1f66_C 1 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVK 80 (128)
T ss_dssp ----------------CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCCCCCCCCCCcCCCCcCccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 78642 23455667899999999999999999999999987 599999999999999999999999999999999999
Q ss_pred ccchhhHHHHHhccHHHHhhhcCceecCCCcCCcccccc
Q psy3827 77 RIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGA 115 (581)
Q Consensus 77 rItP~hL~lAI~nDeEL~~Lf~~vtIa~GGVlP~Iv~~a 115 (581)
+|+|+||++||+||+||++||++ ||++|||+||||+..
T Consensus 81 rItprhi~lAI~nDeEL~~Ll~~-tia~ggv~P~i~~~l 118 (128)
T 1f66_C 81 RITPRHLQLAIRGDEELDSLIKA-TIAGGGVIPHIHKSL 118 (128)
T ss_dssp EECHHHHHHHHHHSHHHHHHCCS-EETTCCCCCCCCGGG
T ss_pred eEcHHHHHHHHhccHHHhhhhcc-eecCCccCCCCCHHh
Confidence 99999999999999999999965 999999999999984
No 13
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.97 E-value=1.4e-33 Score=272.82 Aligned_cols=111 Identities=70% Similarity=1.028 Sum_probs=101.8
Q ss_pred cccceeEeeeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHhhCchHHhhhhhh
Q psy3827 238 RKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVS 317 (581)
Q Consensus 238 r~esy~~YiykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLPgeLaKhAvs 317 (581)
++|+|++||||||||||||++||++||.+||+|++|||||||.||++|++||+|+|||+||||+||||+|||||+|||++
T Consensus 1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~ 80 (192)
T 2jss_A 1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVS 80 (192)
T ss_dssp CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHH
T ss_pred CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhhcccccchhhhhhhhhchhhhhhhcc
Q psy3827 318 EGTKAVTKYTSSKCRAKTKQEEGALGFLFGLL 349 (581)
Q Consensus 318 eGtkAVtky~ssk~~~~~~~~~~~~~~~~~~~ 349 (581)
||+|||++|++++. ...+-.+.+|-|-+|..
T Consensus 81 eG~kAv~k~~~sk~-~~s~s~ragl~fPv~ri 111 (192)
T 2jss_A 81 EGTRAVTKYSSSTQ-AQSSSARAGLQFPVGRI 111 (192)
T ss_dssp HHHHHHHHHHHHCS-SSCHHHHSSCCSCHHHH
T ss_pred HHHHHHHhhccccc-cccccccCCCcCCHHHH
Confidence 99999999988763 23555667788866644
No 14
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.97 E-value=5.6e-33 Score=233.34 Aligned_cols=77 Identities=96% Similarity=1.295 Sum_probs=74.1
Q ss_pred hhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhccCC
Q psy3827 505 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 581 (581)
Q Consensus 505 ~lLI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~~~ 581 (581)
+|||||+||+||||||+++|++++|||++|+.|||||+|+|||+||||+|+||+|||||||||+|||||+||||+++
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~~ 77 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 77 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCC-
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999864
No 15
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.97 E-value=7.2e-33 Score=235.12 Aligned_cols=75 Identities=63% Similarity=0.968 Sum_probs=71.7
Q ss_pred hhhccCchhHHHHHHHhhcc--ccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhccC
Q psy3827 506 LLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 580 (581)
Q Consensus 506 lLI~K~pF~RLVrEI~~~~~--~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~~ 580 (581)
|||||+||+||||||+++|+ .++|||++|+.|||||+|+|||+||||+|+||+|||||||||+|||||+||||++
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~ 78 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 78 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcccc
Confidence 79999999999999999998 6899999999999999999999999999999999999999999999999999986
No 16
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.97 E-value=3.3e-31 Score=256.19 Aligned_cols=98 Identities=63% Similarity=0.989 Sum_probs=94.6
Q ss_pred CCCCCCcccCcccchhHHHHHHhcCCcc-cccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhccH
Q psy3827 13 KSKTRSSRAGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (581)
Q Consensus 13 k~~SrSsRAgLqFPVgRI~RlLk~~~ya-~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~nDe 91 (581)
+++|+|+||||||||+||+|+||+++++ +||+++|||||+||||||++||||+|+|+|+++++++|+|+||++||+||+
T Consensus 94 ~~~s~s~ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~ 173 (192)
T 2jss_A 94 QAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDD 173 (192)
T ss_dssp SSSCHHHHSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSH
T ss_pred ccccccccCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccH
Confidence 5679999999999999999999999886 799999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCceecCCCcCCcc
Q psy3827 92 ELNKLLSGVTIAQGGVLPNI 111 (581)
Q Consensus 92 EL~~Lf~~vtIa~GGVlP~I 111 (581)
||++||+ +||++|||+|||
T Consensus 174 eL~~L~~-~ti~~ggv~p~i 192 (192)
T 2jss_A 174 ELDSLIR-ATIASGGVLPHI 192 (192)
T ss_dssp HHHHHHC-SCCTTTCCSSCC
T ss_pred HHHHHHh-hhhcCCCcCCCC
Confidence 9999996 699999999997
No 17
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.6e-30 Score=256.37 Aligned_cols=77 Identities=70% Similarity=1.040 Sum_probs=72.5
Q ss_pred hhhhhccCchhHHHHHHHhhccc---cccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhccC
Q psy3827 504 TELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 580 (581)
Q Consensus 504 t~lLI~K~pF~RLVrEI~~~~~~---~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~~ 580 (581)
..|||||+||+||||||+++|.+ ++|||++||.|||||+|+|||+||||+|+||+|||||||||||||||+||||++
T Consensus 8 ~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~ 87 (235)
T 2l5a_A 8 KKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQF 87 (235)
T ss_dssp ---CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSC
T ss_pred ccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhcc
Confidence 35899999999999999999986 899999999999999999999999999999999999999999999999999985
No 18
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.87 E-value=5.4e-23 Score=185.82 Aligned_cols=73 Identities=60% Similarity=0.895 Sum_probs=69.2
Q ss_pred hhccCchhHHHHHHHhhccc---cccccHHHHHHHHHHHHhhhhccchhhhhhhhc------------------------
Q psy3827 507 LIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIH------------------------ 559 (581)
Q Consensus 507 LI~K~pF~RLVrEI~~~~~~---~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~H------------------------ 559 (581)
||||+||+||||||++++++ ++|||++||.|||||+|+|||+||||+|+||+|
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~~ 80 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSF 80 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHHHH
Confidence 79999999999999999987 899999999999999999999999999999998
Q ss_pred --------------CCeeeeCcccHHHHHHHhcc
Q psy3827 560 --------------AKRVTIMPKDIQLARRIRGE 579 (581)
Q Consensus 560 --------------aKRVTI~~kDiqLa~rIrg~ 579 (581)
|+|-||+..||.+|.+-.|.
T Consensus 81 l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~ 114 (121)
T 2ly8_A 81 LESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 114 (121)
T ss_dssp HHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC
Confidence 68889999999999988875
No 19
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.85 E-value=1.6e-22 Score=235.50 Aligned_cols=100 Identities=27% Similarity=0.465 Sum_probs=82.6
Q ss_pred CCCCCCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhccHH
Q psy3827 13 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (581)
Q Consensus 13 k~~SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~nDeE 92 (581)
...|||+|||||||||||||+| +|+|++|||++||||||||||||++||||||||+|+++++.+|+|+||++|++||+|
T Consensus 93 ~~~~~~~~~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~e 171 (1049)
T 3ksy_A 93 AIEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKV 171 (1049)
T ss_dssp HHTTCCCSSSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCSS
T ss_pred hhhcccccCCccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCHH
Confidence 3468999999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCceecCCCcCCccccc
Q psy3827 93 LNKLLSGVTIAQGGVLPNIQAG 114 (581)
Q Consensus 93 L~~Lf~~vtIa~GGVlP~Iv~~ 114 (581)
|+.+|++. ...+|++|+..+.
T Consensus 172 L~~l~~~d-ee~~~~lp~~~~~ 192 (1049)
T 3ksy_A 172 LMDMFHQD-VEDINILSLTDEE 192 (1049)
T ss_dssp HHHHCC----------------
T ss_pred HHHHHhhc-cccccCCCCcccc
Confidence 99999864 4567888876665
No 20
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.73 E-value=2.3e-18 Score=150.31 Aligned_cols=83 Identities=17% Similarity=0.347 Sum_probs=62.5
Q ss_pred CCCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhccHHHHh
Q psy3827 16 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNK 95 (581)
Q Consensus 16 SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~nDeEL~~ 95 (581)
+++.+++++|||+||+|+||.+.+..||++.||||+++++||++.||+++|++.|+++++++|+|+||..||++|++|+.
T Consensus 3 ~~~kk~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~F 82 (98)
T 1jfi_A 3 SKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAA 82 (98)
T ss_dssp -------CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-------
T ss_pred CcccccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhc
Q psy3827 96 LLS 98 (581)
Q Consensus 96 Lf~ 98 (581)
|+.
T Consensus 83 L~d 85 (98)
T 1jfi_A 83 NKA 85 (98)
T ss_dssp ---
T ss_pred HHh
Confidence 983
No 21
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.63 E-value=7.1e-17 Score=131.40 Aligned_cols=63 Identities=29% Similarity=0.348 Sum_probs=60.9
Q ss_pred hccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHH
Q psy3827 508 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 575 (581)
Q Consensus 508 I~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~r 575 (581)
||++||+|++|++ ++.||+++|+.+|||++|.|++.||+++|.||.|+||+||+++||++|++
T Consensus 3 lP~a~v~Ri~k~~-----~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~ 65 (68)
T 1b67_A 3 LPIAPIGRIIKNA-----GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK 65 (68)
T ss_dssp SCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGG
T ss_pred CCccHHHHHHhcC-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 6999999999999 57999999999999999999999999999999999999999999999976
No 22
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.50 E-value=2.9e-14 Score=124.06 Aligned_cols=79 Identities=20% Similarity=0.321 Sum_probs=72.0
Q ss_pred ccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhccHHHHhhhc
Q psy3827 20 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 98 (581)
Q Consensus 20 RAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~nDeEL~~Lf~ 98 (581)
-.+++||++||+|+||.+.+..||+..||+|++.++||++.++++.|++.|.++++++|+|+||..||++|++|+.|..
T Consensus 15 ~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~d 93 (97)
T 1n1j_B 15 FRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLID 93 (97)
T ss_dssp -----CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGTT
T ss_pred cCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHHh
Confidence 3478999999999999999999999999999999999999999999999999999999999999999999999998873
No 23
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.47 E-value=5.5e-14 Score=126.69 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=72.4
Q ss_pred CcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhccHHHHhhh
Q psy3827 22 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 97 (581)
Q Consensus 22 gLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~nDeEL~~Lf 97 (581)
-.+||++||+|+||.+.+..+|++.||+|+++++||++.+|++.|++.|+++++++|+|+||..||++|++|+.|.
T Consensus 39 ~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~ 114 (119)
T 4g92_C 39 IHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLI 114 (119)
T ss_dssp CCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred cCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHHH
Confidence 3479999999999999999999999999999999999999999999999999999999999999999999998654
No 24
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.45 E-value=8.8e-14 Score=122.41 Aligned_cols=89 Identities=25% Similarity=0.375 Sum_probs=63.5
Q ss_pred CCCCCCCCCC-------CCCCCCCCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3827 1 MSGRGKGGKA-------KAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 73 (581)
Q Consensus 1 Msg~gk~gk~-------~~k~~SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~ 73 (581)
|||+||+||. +.++.++++.+| ||+..|+|+++.+.+ .||+..|..+|+.+|||++.||++.|.+.|++.
T Consensus 1 m~~~gk~gkg~~~~~~kr~~~~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha 77 (103)
T 2yfw_B 1 MSGRGKGGKGLGKGGAKRHRKILRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHA 77 (103)
T ss_dssp -------------------------------CCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCccchhhhhhhhhcc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999887763 334556899999 999999999999987 799999999999999999999999999999999
Q ss_pred CCcccchhhHHHHHhccHH
Q psy3827 74 KKTRIIPRHLQLAIRNDEE 92 (581)
Q Consensus 74 kkkrItP~hL~lAI~nDeE 92 (581)
+++.|+|+||.+|+++.-+
T Consensus 78 kRktvt~~DV~~Alr~~g~ 96 (103)
T 2yfw_B 78 KRKTVTSLDVVYALKRQGR 96 (103)
T ss_dssp TCSEECHHHHHHHHHHHC-
T ss_pred CCCcCcHHHHHHHHHHcCC
Confidence 9999999999999996543
No 25
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.44 E-value=1.5e-13 Score=120.79 Aligned_cols=88 Identities=25% Similarity=0.378 Sum_probs=71.0
Q ss_pred CCCCCCCCCC-------CCCCCCCCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3827 1 MSGRGKGGKA-------KAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 73 (581)
Q Consensus 1 Msg~gk~gk~-------~~k~~SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~ 73 (581)
|||+||+||. +.++.++++.+| ||+..|+|+++.+.+ .||+..|..+|+.+|||++.||++.|.+.|++.
T Consensus 1 m~g~gk~~kg~~~~~~kr~~k~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha 77 (103)
T 1tzy_D 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHA 77 (103)
T ss_dssp --------------------CCCCCGGGG--SCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCccccccchhhhccc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8998876653 334558999999 999999999999987 799999999999999999999999999999999
Q ss_pred CCcccchhhHHHHHhccH
Q psy3827 74 KKTRIIPRHLQLAIRNDE 91 (581)
Q Consensus 74 kkkrItP~hL~lAI~nDe 91 (581)
+++.|+|+||.+|+++.-
T Consensus 78 kRktIt~~DV~~Alr~~g 95 (103)
T 1tzy_D 78 KRKTVTAMDVVYALKRQG 95 (103)
T ss_dssp TCSEECHHHHHHHHHHTT
T ss_pred CCCcCCHHHHHHHHHHcC
Confidence 999999999999999763
No 26
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.37 E-value=1.6e-13 Score=112.54 Aligned_cols=64 Identities=30% Similarity=0.351 Sum_probs=60.7
Q ss_pred hhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHH
Q psy3827 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 575 (581)
Q Consensus 507 LI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~r 575 (581)
-||+.||.|++|+. ...||+.+|+.+|||++|.|+..+++|++.||.|+||.||+++|++||.+
T Consensus 6 ~lp~a~v~Rl~r~~-----g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-----GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc-----CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 37999999999986 46899999999999999999999999999999999999999999999975
No 27
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.32 E-value=4.7e-13 Score=111.63 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=61.8
Q ss_pred eeeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHhhCc
Q psy3827 245 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 308 (581)
Q Consensus 245 YiykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLP 308 (581)
+|+|++|++|||..||++|+.+|+.++++++++||.||..+|++++|+||+++||++|++.+|-
T Consensus 9 ~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~ 72 (76)
T 3b0c_W 9 TLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVILK 72 (76)
T ss_dssp HHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999998863
No 28
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.32 E-value=8.1e-13 Score=122.30 Aligned_cols=85 Identities=13% Similarity=0.195 Sum_probs=62.2
Q ss_pred CCCCCCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHH-hhhCCcccchhhHHHHHhccH
Q psy3827 13 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAA-RDNKKTRIIPRHLQLAIRNDE 91 (581)
Q Consensus 13 k~~SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A-~~~kkkrItP~hL~lAI~nDe 91 (581)
+..+++.+.+++||++||+|+||......+|+..||++++.++||++.++.+.|++.| ...+++.|++.||..||.+++
T Consensus 8 k~~s~~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e 87 (140)
T 2byk_A 8 PPVERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNK 87 (140)
T ss_dssp ---------------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCS
T ss_pred CCCCCCcccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCc
Confidence 4578889999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHhhh
Q psy3827 92 ELNKLL 97 (581)
Q Consensus 92 EL~~Lf 97 (581)
+|+.|.
T Consensus 88 ~~dFL~ 93 (140)
T 2byk_A 88 NLEFLL 93 (140)
T ss_dssp TTGGGT
T ss_pred hhhhHh
Confidence 998887
No 29
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.18 E-value=5.6e-12 Score=108.59 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=63.6
Q ss_pred cchhhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHH
Q psy3827 502 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 575 (581)
Q Consensus 502 kst~lLI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~r 575 (581)
+++++.+|++|+.|++|++.. .+.+|+.+|..+||+|+|.|+..|+++++.||.|++|.||+++||..|++
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~---~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIP---QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CcccccCChhHHHHHHHHhCC---ccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 357889999999999999854 46899999999999999999999999999999999999999999999986
No 30
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.08 E-value=5.1e-10 Score=105.12 Aligned_cols=146 Identities=20% Similarity=0.308 Sum_probs=118.4
Q ss_pred ccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhccHHHHhh-hcCcee
Q psy3827 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL-LSGVTI 102 (581)
Q Consensus 24 qFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~nDeEL~~L-f~~vtI 102 (581)
-+|..-|.|++|++-...|||..|...|+.++|.+..+|...|.+.|...+++.|+++|+..|+. .| |.+
T Consensus 4 ~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~------~lg~~~--- 74 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALAD------VLMVEG--- 74 (154)
T ss_dssp CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH------HHTCTT---
T ss_pred cCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH------hccccc---
Confidence 47999999999998556999999999999999999999999999999999999999999999981 11 211
Q ss_pred cCCCcCCcccccccccccccccccCCCCCccceeccCCCCCchhhHHhhhhhccccccCCCCCcccCCccccCCCCCCCc
Q psy3827 103 AQGGVLPNIQAGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATGLLVDEPGDTLDSTSTRQTTDGGLGDS 182 (581)
Q Consensus 103 a~GGVlP~Iv~~a~L~~ekv~~vhg~~gl~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (581)
|.. ++||
T Consensus 75 ----v~d--------------------------------------~~~l------------------------------- 81 (154)
T 1f1e_A 75 ----VED--------------------------------------YDGE------------------------------- 81 (154)
T ss_dssp ----STT--------------------------------------CCSC-------------------------------
T ss_pred ----CCc--------------------------------------cccc-------------------------------
Confidence 100 0000
Q ss_pred ccccccccccccCccccccccccccccCCCCcchhhhhhcccccccccccccccccccceeEeeeeecccccCCCCcchh
Q psy3827 183 LDVVTEYFPVPLGASFSESLSSLTTAAGKSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSK 262 (581)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~s~s~~~~k~~~k~~~ka~k~~~~~~~~~kk~k~~r~esy~~YiykVLKQVhpd~gISsk 262 (581)
+||++ + |.|++|+. ....||+.
T Consensus 82 ------~lP~a----------------------~-----------------------------V~Ri~k~~-g~~RVS~~ 103 (154)
T 1f1e_A 82 ------LFGRA----------------------T-----------------------------VRRILKRA-GIERASSD 103 (154)
T ss_dssp ------CCCHH----------------------H-----------------------------HHHHHHHT-TCCEECHH
T ss_pred ------cCCcc----------------------H-----------------------------HHHHHHHc-CCccchHH
Confidence 13321 0 22233333 33689999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHhhCch
Q psy3827 263 AMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 309 (581)
Q Consensus 263 am~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLPg 309 (581)
|...|..++.++.+.|+.+|..++++++|+||+++||+.|++..||.
T Consensus 104 A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~~ 150 (154)
T 1f1e_A 104 AVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMPK 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999993
No 31
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.78 E-value=5.5e-09 Score=98.14 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=68.3
Q ss_pred cccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhcc
Q psy3827 19 SRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 90 (581)
Q Consensus 19 sRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~nD 90 (581)
.+.+|.||++.|.|++|++ ...|||+.|.++|+.+|||++.+|.+.|.+.|+..+++.|+|+||.+|+.++
T Consensus 77 d~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 4789999999999999998 7889999999999999999999999999999999999999999999999876
No 32
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.49 E-value=8.2e-08 Score=86.99 Aligned_cols=64 Identities=25% Similarity=0.371 Sum_probs=60.4
Q ss_pred ccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhh----hhhhhcCCeeeeCcccHHHHHHH
Q psy3827 509 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDT----NLCAIHAKRVTIMPKDIQLARRI 576 (581)
Q Consensus 509 ~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda----~lcA~HaKRVTI~~kDiqLa~rI 576 (581)
++..|..+|+.|+.++++|+++++.|+..| +.|+.++||.. ..++.|+||.||+++|||.|.||
T Consensus 31 ~~esy~~YIyKVLKQVhpd~gISskAm~Im----nSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 98 (123)
T 2nqb_D 31 RKESYAIYIYTVLKQVHPDTGISSKAMSIM----NSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRL 98 (123)
T ss_dssp CCCCSHHHHHHHHHHHCTTCEECHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhCCCCCcCHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHH
Confidence 678899999999999999999999999999 99999999986 77899999999999999999997
No 33
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.49 E-value=8e-08 Score=87.34 Aligned_cols=64 Identities=27% Similarity=0.370 Sum_probs=60.6
Q ss_pred ccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhh----hhhhhcCCeeeeCcccHHHHHHH
Q psy3827 509 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDT----NLCAIHAKRVTIMPKDIQLARRI 576 (581)
Q Consensus 509 ~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda----~lcA~HaKRVTI~~kDiqLa~rI 576 (581)
++..|..+|+.|+.++++|+++++.|+..| +.|+.++||.. ..++.|+||.||+++|||.|.||
T Consensus 34 ~~esy~~YIyKVLKQVhpd~gISskAm~Im----nSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 101 (126)
T 1tzy_B 34 RKESYSIYVYKVLKQVHPDTGISSKAMGIM----NSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRL 101 (126)
T ss_dssp CCCCCHHHHHHHHHHHCTTCEECHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhCCCCCcCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 678899999999999999999999999999 99999999986 77999999999999999999997
No 34
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.18 E-value=2.5e-06 Score=69.08 Aligned_cols=65 Identities=28% Similarity=0.413 Sum_probs=61.5
Q ss_pred ccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhc
Q psy3827 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (581)
Q Consensus 24 qFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~n 89 (581)
.||..+|.|++|+. ...||++.|...|.-++|++..+|.+-|...|...+++.|+|+||++|++.
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 48999999999998 678999999999999999999999999999999999999999999999863
No 35
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.12 E-value=5.5e-06 Score=72.83 Aligned_cols=86 Identities=24% Similarity=0.375 Sum_probs=64.4
Q ss_pred CCCCCCCC-------CCCCCCCCCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy3827 2 SGRGKGGK-------AKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNK 74 (581)
Q Consensus 2 sg~gk~gk-------~~~k~~SrSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~k 74 (581)
||+||+|| ++.++..+.+..+ +|..-|.|+++.+.. .||+..+..-|+-+|||+..+|+.-|...|+..+
T Consensus 1 ~~~~~~~~g~~~~g~kr~~k~~r~~i~~--ip~~~I~Rlar~~Gv-~rIS~da~~~l~~~le~fi~~I~~dA~~~a~Hak 77 (102)
T 1id3_B 1 SGRGKGGKGLGKGGAKRHRKILRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAK 77 (102)
T ss_dssp -----------------------CCGGG--SCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCccchHHHHHHhccCC--CCHHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45655443 3344455666666 788999999998764 7999999999999999999999999999999999
Q ss_pred CcccchhhHHHHHhcc
Q psy3827 75 KTRIIPRHLQLAIRND 90 (581)
Q Consensus 75 kkrItP~hL~lAI~nD 90 (581)
++.|+++|+.+|+...
T Consensus 78 RKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 78 RKTVTSLDVVYALKRQ 93 (102)
T ss_dssp CSEECHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHHHc
Confidence 9999999999999855
No 36
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.11 E-value=4.1e-06 Score=68.39 Aligned_cols=65 Identities=32% Similarity=0.468 Sum_probs=61.7
Q ss_pred ccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhc
Q psy3827 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (581)
Q Consensus 24 qFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~n 89 (581)
.||.+.|+|++|++. ..|++..+...|..++|+++.+|++-|...|...+++.|+|+|+.+|+++
T Consensus 6 ~lp~a~v~Rl~r~~g-~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 6 ELPIAPVDRLIRKAG-AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CSCHHHHHHHHHHTT-CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cCChHHHHHHHHHcC-cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 689999999999874 67999999999999999999999999999999999999999999999875
No 37
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.04 E-value=7.1e-07 Score=93.43 Aligned_cols=50 Identities=42% Similarity=0.525 Sum_probs=12.9
Q ss_pred cccccccCCCCCCCCccchhhhhhcccCCCCCCCCCCccCCCCcchhhhh
Q psy3827 448 RTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREI 497 (581)
Q Consensus 448 RtKqtArkstggkaPrK~la~k~arks~p~~~~~kk~~r~rpgt~alrEI 497 (581)
||||+|+|++||++|++++++++++++.|..++.+++|||+||++|+.|.
T Consensus 3 ~tk~tarkstggkaprk~~~~k~~rk~~~~~~~~kkp~R~rPGt~a~~e~ 52 (361)
T 2r10_A 3 DPFTTARKSTGGKAPRKGGMVVKKRKLATEAGGSDERPKYLPGKHPKNQE 52 (361)
T ss_dssp ------------------------------------CCSSCCSCCBCCCS
T ss_pred cccccccCCCCCCCCCccccccccCCCCCCCCCCCCCcccCCCccccccc
Confidence 89999999999999999999999999888888889999999999998775
No 38
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.02 E-value=2.5e-06 Score=74.86 Aligned_cols=70 Identities=23% Similarity=0.216 Sum_probs=61.7
Q ss_pred hhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhcc
Q psy3827 505 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 579 (581)
Q Consensus 505 ~lLI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~ 579 (581)
.--||+.+..|+.|.. . .-|++.+|.++|++..|.|+..+.+|+..+|-|++|-||++.||++|.+-.|+
T Consensus 27 ~~gip~~~I~Rlar~~----G-~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~ 96 (103)
T 1tzy_D 27 IQGITKPAIRRLARRG----G-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 96 (103)
T ss_dssp GGGSCHHHHHHHHHHT----T-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred cccCCHHHHHHHHHHc----C-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCC
Confidence 3348888888887754 2 25999999999999999999999999999999999999999999999987665
No 39
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=97.99 E-value=2.4e-06 Score=75.11 Aligned_cols=69 Identities=23% Similarity=0.254 Sum_probs=60.0
Q ss_pred hhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhcc
Q psy3827 506 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 579 (581)
Q Consensus 506 lLI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~ 579 (581)
--||+.+..||.|.. . .-|++.+|.++|++..|.|+..+.+|+..+|-|++|-||++.||++|.+-.|+
T Consensus 28 ~gip~~~I~Rlar~~----G-~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~ 96 (103)
T 2yfw_B 28 QGITKPAIRRLARRG----G-VKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 96 (103)
T ss_dssp --CCHHHHHHHHHHT----T-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred ccCCHHHHHHHHHHc----C-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 348888888887654 2 26999999999999999999999999999999999999999999999987765
No 40
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.94 E-value=4e-06 Score=73.72 Aligned_cols=70 Identities=23% Similarity=0.240 Sum_probs=62.7
Q ss_pred hhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhcc
Q psy3827 505 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 579 (581)
Q Consensus 505 ~lLI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~ 579 (581)
.--||+.|..||.|.. ...|++.+|.++|+++.|.|+..+-+|+..+|-|++|-||++.||.+|.+-.|+
T Consensus 26 i~~ip~~~I~Rlar~~-----Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~ 95 (102)
T 1id3_B 26 IQGITKPAIRRLARRG-----GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 95 (102)
T ss_dssp GGGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 3348999988888764 347999999999999999999999999999999999999999999999987765
No 41
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=97.83 E-value=5e-06 Score=70.47 Aligned_cols=69 Identities=23% Similarity=0.232 Sum_probs=61.3
Q ss_pred hhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhcc
Q psy3827 506 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 579 (581)
Q Consensus 506 lLI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~ 579 (581)
--||+.|..|+.|.. ...|++.+|.++|++..|.|+..+-+|+..+|-|++|-||++.|+.+|.+-.|+
T Consensus 9 ~~ip~~~I~Riar~~-----Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~ 77 (84)
T 2hue_C 9 QGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 77 (84)
T ss_dssp CSSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCE
T ss_pred CCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 348888888887754 347999999999999999999999999999999999999999999999886664
No 42
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=97.78 E-value=7.8e-06 Score=67.96 Aligned_cols=66 Identities=15% Similarity=0.261 Sum_probs=59.0
Q ss_pred hhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHH
Q psy3827 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 576 (581)
Q Consensus 507 LI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rI 576 (581)
.+|+++..|+++++. ++.+++.+|..+|++++|.|+..|-..++-.|.|.+|-||.++||+.|.+.
T Consensus 4 ~LP~A~V~rI~K~~~----p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHK----PHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp CCCHHHHHHHHHHHC----TTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred cccccHHHHHHHHhC----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 367777777777664 578999999999999999999999999999999999999999999998865
No 43
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=97.68 E-value=2.7e-05 Score=69.39 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=57.7
Q ss_pred hhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhcc
Q psy3827 505 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 579 (581)
Q Consensus 505 ~lLI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~ 579 (581)
++-||+..-.||.|+- ...|++.+|+++|+|+++.|+..+-.|+...|-||+|-||++.|+.++.+--|.
T Consensus 5 d~~lP~a~I~Ri~r~~-----g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-----VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp -----CHHHHHHHHHH-----HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHC-----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 4567777766766555 468999999999999999999999999999999999999999999999886553
No 44
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.47 E-value=0.00011 Score=60.40 Aligned_cols=62 Identities=23% Similarity=0.428 Sum_probs=56.6
Q ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHh
Q psy3827 515 RLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 577 (581)
Q Consensus 515 RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIr 577 (581)
++|..|+.+.+- -+++..+...|-|.+|.|..++.+|+..+|-||+|-||...|++||.+.|
T Consensus 5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 677778877654 39999999999999999999999999999999999999999999998876
No 45
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.46 E-value=0.0002 Score=61.38 Aligned_cols=68 Identities=10% Similarity=0.248 Sum_probs=62.2
Q ss_pred cCcccchhHHHHHHhcCC-cccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHh
Q psy3827 21 AGLQFPVGRIHRLLRKGN-YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (581)
Q Consensus 21 AgLqFPVgRI~RlLk~~~-ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~ 88 (581)
..+.||.++|.|++|+.. -..||+..|...|+-+.|.+..+|.+-|...|...+++-|+++||..|++
T Consensus 5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 367899999999999873 35799999999999999999999999999999999999999999999997
No 46
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.00011 Score=63.56 Aligned_cols=66 Identities=24% Similarity=0.185 Sum_probs=55.2
Q ss_pred cCchhHHHHHHHhhcc--ccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHH
Q psy3827 510 KLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 575 (581)
Q Consensus 510 K~pF~RLVrEI~~~~~--~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~r 575 (581)
|..+.--|-.|+++.- .++.++.+++.+|-|.++.|+..+-+|+...|-||+|-||.+.|+.|+.|
T Consensus 11 Kaal~~~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLR 78 (90)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 3344555556665542 24789999999999999999999999999999999999999999999865
No 47
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=97.33 E-value=0.00014 Score=65.22 Aligned_cols=60 Identities=30% Similarity=0.425 Sum_probs=52.1
Q ss_pred hHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHH
Q psy3827 514 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 575 (581)
Q Consensus 514 ~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~r 575 (581)
.|+|++...+ .++.++.+++.+|-|.++.|+..+-.|+...|-||+|-||.+.|+.|+.|
T Consensus 34 ~rIvke~gae--r~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R 93 (113)
T 4dra_A 34 GCLCEEVALD--KEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLAR 93 (113)
T ss_dssp HHHHHHHHHH--HTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHH--cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 3555555443 35779999999999999999999999999999999999999999999965
No 48
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=97.25 E-value=0.00023 Score=63.96 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=61.8
Q ss_pred hhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHH
Q psy3827 506 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 575 (581)
Q Consensus 506 lLI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~r 575 (581)
+=.+.+|..| |+.|++.-....+++.+|..++..|+|-|+..|.+.++.+|...||-||+++||..|.+
T Consensus 37 ~k~~~lPvaR-IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 37 YKIHQLPLAR-IKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp SSCCSSCHHH-HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred cccCCCCHHH-HHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence 3356789998 68888865556799999999999999999999999999999999999999999999875
No 49
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=97.25 E-value=0.00012 Score=65.10 Aligned_cols=64 Identities=27% Similarity=0.321 Sum_probs=53.6
Q ss_pred chhHHHHHHHhhcc--ccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHH
Q psy3827 512 PFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 575 (581)
Q Consensus 512 pF~RLVrEI~~~~~--~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~r 575 (581)
.++--|-.|+++.. .+.+++.+++.+|-|.++.|...+-.|+...|-||+|-||...|+.|+.|
T Consensus 20 al~~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~R 85 (107)
T 3b0b_B 20 AVHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLAR 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHH
Confidence 33334444444432 35799999999999999999999999999999999999999999999876
No 50
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.23 E-value=0.00026 Score=61.42 Aligned_cols=80 Identities=20% Similarity=0.306 Sum_probs=57.0
Q ss_pred hhhhhhcccchhhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHH
Q psy3827 494 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 573 (581)
Q Consensus 494 lrEIR~yQkst~lLI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa 573 (581)
+.||+..- ..+.--..+|-.|. +.|++.-...-+++.+|..+|..|+|-|+..|-+.++.+|.|.||.||+++||++|
T Consensus 4 ~~~~~~~~-~~~~~~~~lP~arI-krImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~A 81 (97)
T 1n1j_B 4 MEEIRNLT-VKDFRVQELPLARI-KKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMA 81 (97)
T ss_dssp -----------------CCHHHH-HHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred HHHHHhcc-cCCcCCCcCCHHHH-HHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHH
Confidence 45666542 12233356777775 67777654446899999999999999999999999999999999999999999998
Q ss_pred HH
Q psy3827 574 RR 575 (581)
Q Consensus 574 ~r 575 (581)
.+
T Consensus 82 v~ 83 (97)
T 1n1j_B 82 IT 83 (97)
T ss_dssp HT
T ss_pred Hh
Confidence 75
No 51
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.20 E-value=0.00024 Score=64.79 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=58.5
Q ss_pred hhhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHH
Q psy3827 504 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 576 (581)
Q Consensus 504 t~lLI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rI 576 (581)
.++.+|..+-.|++++... ...+++.+|..+|++|+|.|+..|-..++..+.|.+|-||...||..|..-
T Consensus 6 ~d~~LP~A~I~rImK~~~p---d~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~ 75 (128)
T 2byk_B 6 EDLNLPNAVIGRLIKEALP---ESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTE 75 (128)
T ss_dssp -----CCSHHHHHHHHHSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHhCc---ccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 3567888888888877643 468999999999999999999999999999999999999999999988753
No 52
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.12 E-value=0.00021 Score=68.61 Aligned_cols=70 Identities=14% Similarity=0.269 Sum_probs=63.3
Q ss_pred cchhhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHH
Q psy3827 502 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 575 (581)
Q Consensus 502 kst~lLI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~r 575 (581)
...++.+|+.+..|++++++- +.+++.+|..+|+++++.|+.-|--.++-.+.|.+|-||.+.||-.|..
T Consensus 10 ~~eD~~LP~A~V~RImK~alp----~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~ 79 (179)
T 1jfi_B 10 NDDDLTIPRAAINKMIKETLP----NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE 79 (179)
T ss_dssp --CCCCCCHHHHHHHHHHHST----TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred chhhhhcCHHHHHHHHHHhCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 345788999999999999863 7899999999999999999999999999999999999999999998875
No 53
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=97.11 E-value=0.00023 Score=65.84 Aligned_cols=64 Identities=28% Similarity=0.353 Sum_probs=54.6
Q ss_pred chhHHHHHHHhhc--cccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHH
Q psy3827 512 PFQRLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 575 (581)
Q Consensus 512 pF~RLVrEI~~~~--~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~r 575 (581)
..+--|-.|+++. ..++.++.+++.+|-|.++.|+..+-.|+...|-||+|-||.+.||.|+.|
T Consensus 20 Al~y~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~R 85 (140)
T 3vh5_A 20 AVHYTTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLAR 85 (140)
T ss_dssp HHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 3444455555554 246889999999999999999999999999999999999999999999976
No 54
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.09 E-value=0.00046 Score=62.87 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=61.2
Q ss_pred CcccchhHHHHHHhc-CCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhccH
Q psy3827 22 GLQFPVGRIHRLLRK-GNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (581)
Q Consensus 22 gLqFPVgRI~RlLk~-~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~nDe 91 (581)
.+.||+++|.|++|+ ..-..+|+..|+..|+-+.|.+..+|-..|...|...+++-|+++||..|+....
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~ 77 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELD 77 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 578999999999995 4456799999999999999999999999999999999999999999999999764
No 55
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.06 E-value=0.00045 Score=57.09 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=53.2
Q ss_pred hccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHH
Q psy3827 508 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 576 (581)
Q Consensus 508 I~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rI 576 (581)
+|..|..++. +..+- -+.+.+|..+|-+-.|.++-.+.+++..|+.|+||-||+..||.+|.++
T Consensus 7 lp~~~v~~ia----es~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 7 ISAESMKVIA----ESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp CCHHHHHHHH----HHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred CCHHHHHHHH----HHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 4555555544 44332 3889999999999999999999999999999999999999999999864
No 56
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=96.93 E-value=0.002 Score=54.45 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=64.0
Q ss_pred CCcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhcc
Q psy3827 17 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 90 (581)
Q Consensus 17 rSsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~nD 90 (581)
|.+..| +|..-|.|+++.+.. .||+..+..-|+.++||...+|+.-|...++..+++.|+++|+..|++..
T Consensus 5 r~~~~~--ip~~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 5 RDNIQG--ITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp GGGCCS--SCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred cccCCC--CCHHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 344455 788899999998864 79999999999999999999999999999999999999999999999865
No 57
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B*
Probab=96.40 E-value=0.0011 Score=44.02 Aligned_cols=24 Identities=75% Similarity=1.055 Sum_probs=19.3
Q ss_pred hhcccCCCCCCCCCCccCCCCcch
Q psy3827 470 AARKSAPATGGVKKPHRYRPGTVA 493 (581)
Q Consensus 470 ~arks~p~~~~~kk~~r~rpgt~a 493 (581)
++++++|..++.+++||||||++|
T Consensus 3 ~ark~~p~~~~~kk~~RyRPGtvA 26 (26)
T 2x4w_B 3 AARKSAPATGGVXKPHRYRXXXXX 26 (26)
T ss_pred ccccCCCCCCccccccccccccCC
Confidence 445666777788899999999986
No 58
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.29 E-value=0.0085 Score=49.48 Aligned_cols=65 Identities=9% Similarity=0.140 Sum_probs=60.4
Q ss_pred cccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHh
Q psy3827 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (581)
Q Consensus 23 LqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~ 88 (581)
-.||+.-|.++.+.-.. .|++..+...|+--+||-..||++-|.+.++..+++.++++||+.|++
T Consensus 5 s~lp~~~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 46999999999997554 699999999999999999999999999999999999999999999975
No 59
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=96.13 E-value=0.0036 Score=55.68 Aligned_cols=59 Identities=17% Similarity=0.299 Sum_probs=52.1
Q ss_pred eeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHh
Q psy3827 246 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 305 (581)
Q Consensus 246 iykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 305 (581)
|.|+.|.- ....||..+...|..++.++++.|+.+|..++++.+|+||+..||..|++-
T Consensus 13 I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr 71 (111)
T 3b0c_T 13 IKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRR 71 (111)
T ss_dssp HHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 44444443 568999999999999999999999999999999999999999999999884
No 60
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=96.04 E-value=0.005 Score=51.63 Aligned_cols=65 Identities=23% Similarity=0.325 Sum_probs=58.1
Q ss_pred hhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHH
Q psy3827 507 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 575 (581)
Q Consensus 507 LI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~r 575 (581)
+++|.-.+.||++| .+...+..++-++|.+-|+.|+.+..+.+-.+|-|.+--||.+||+||...
T Consensus 5 vl~k~~L~~Lv~~i----dp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 5 VLTKKKLQDLVREV----DPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp SSCHHHHHHHHHHH----CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred cccHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 45676777888777 467899999999999999999999999999999999999999999999764
No 61
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=95.98 E-value=0.0021 Score=55.90 Aligned_cols=66 Identities=14% Similarity=0.197 Sum_probs=54.2
Q ss_pred ccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHH
Q psy3827 509 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 575 (581)
Q Consensus 509 ~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~r 575 (581)
..+|..|. +.|++.-...-|+..+|...|-.|+|-|+..|.+.+..+|.|.+|-||.++||++|.+
T Consensus 10 ~~fPvaRI-krimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~ 75 (98)
T 1jfi_A 10 ARFPPARI-KKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE 75 (98)
T ss_dssp CCCCHHHH-HHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred CCCChHHH-HHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence 45677775 6677764444699999999999999999999999999999999999999999998764
No 62
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=95.80 E-value=0.013 Score=56.32 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=65.6
Q ss_pred CcccCcccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhccHHHHhhh
Q psy3827 18 SSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 97 (581)
Q Consensus 18 SsRAgLqFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~nDeEL~~Lf 97 (581)
..-..+.||++.|.|++|+.....||+..|...|+-+.+-+..+|--.|...|...+++-|+++||..|+. +.++..++
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~-~LgF~~fv 87 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE-SLGFGSYI 87 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HHTTGGGH
T ss_pred CchhhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH-hcChHHHH
Confidence 33457789999999999985436799999999999999999899988898999999999999999999998 44444444
No 63
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=95.51 E-value=0.01 Score=53.75 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=55.6
Q ss_pred eeeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHH
Q psy3827 245 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304 (581)
Q Consensus 245 YiykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 304 (581)
.|+|.||.-.---.||+.|.-.|-..+.++...|.+.|...++.+++.+|++|+||.|++
T Consensus 28 ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 28 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp HHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 689999997444589999999999999999999999999999999999999999999998
No 64
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=95.46 E-value=0.01 Score=53.51 Aligned_cols=60 Identities=23% Similarity=0.280 Sum_probs=55.7
Q ss_pred eeeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHH
Q psy3827 245 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304 (581)
Q Consensus 245 YiykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 304 (581)
.|+|.||....--.|+..|--.|-..+.++...|.+.|...|+.+++.+|++|+||.|++
T Consensus 27 ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 27 RMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp HHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 588999987655689999999999999999999999999999999999999999999998
No 65
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=95.37 E-value=0.011 Score=54.05 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=55.3
Q ss_pred eeeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHH
Q psy3827 245 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304 (581)
Q Consensus 245 YiykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 304 (581)
.|+|.||.-.---.|+..|.-.|-..+.++...|.+.|...|+.+++.+|++|+||.|++
T Consensus 30 rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 30 RVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp HHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 588999986444489999999999999999999999999999999999999999999998
No 66
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=95.34 E-value=0.01 Score=54.91 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=50.4
Q ss_pred ccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhh-hcCCeeeeCcccHHHHHH
Q psy3827 509 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCA-IHAKRVTIMPKDIQLARR 575 (581)
Q Consensus 509 ~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA-~HaKRVTI~~kDiqLa~r 575 (581)
..+|..|+ +.|++.-...-+++.+|..+++.|+|-|+-.|-+.++.+| ...||-||.++||..|..
T Consensus 18 ~~LPlaRI-KrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 18 TFLPLSRV-RTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp ------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred CCCCHHHH-HHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 45677764 7788765445689999999999999999999999999999 999999999999999875
No 67
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=95.29 E-value=0.013 Score=53.49 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=55.5
Q ss_pred eeeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHH
Q psy3827 245 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304 (581)
Q Consensus 245 YiykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 304 (581)
.|+|.||...---.||+.|.-.|-..+.++...|.+.|...|+.+++.+|++|+||.|++
T Consensus 30 rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 30 RVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp HHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 589999986444589999999999999999999999999999999999999999999998
No 68
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=95.10 E-value=0.032 Score=46.74 Aligned_cols=58 Identities=17% Similarity=0.397 Sum_probs=53.8
Q ss_pred eeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHH
Q psy3827 247 YKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304 (581)
Q Consensus 247 ykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 304 (581)
...++||-|...+...+...|-.+.+|+.+.+.+.|++||++.+..||..+|||-...
T Consensus 12 ~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 12 QDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp HHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999999999999997653
No 69
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=95.07 E-value=0.016 Score=54.23 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=55.5
Q ss_pred eeeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHH
Q psy3827 245 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304 (581)
Q Consensus 245 YiykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 304 (581)
.|+|.||.-.---.|+..|.-.|-..+.++...|.+.|...|+.+++.+|++|+||.|++
T Consensus 49 rI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 49 RVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp HHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 588999987555589999999999999999999999999999999999999999999998
No 70
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=95.04 E-value=0.052 Score=44.50 Aligned_cols=60 Identities=18% Similarity=0.106 Sum_probs=55.5
Q ss_pred HHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhc
Q psy3827 29 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (581)
Q Consensus 29 RI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~n 89 (581)
-|+++|++.. .+|++..++..|.-.+|-.+.+|+.-|...|..-+++.|+.+++.+||..
T Consensus 6 ~i~~iLk~~G-~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 6 VIMSILKELN-VQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHTT-CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHCC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 5789999866 47999999999999999999999999999999999999999999999975
No 71
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=94.44 E-value=0.043 Score=49.21 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=52.0
Q ss_pred eeeeccccc--CCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHH
Q psy3827 246 IYKVLKQVH--PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304 (581)
Q Consensus 246 iykVLKQVh--pd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 304 (581)
|.|+++++- .++.+|.+++..|.-++.+.++.||.++..+|+..+|+||+..||..++|
T Consensus 33 V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R 93 (113)
T 4dra_A 33 VGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLAR 93 (113)
T ss_dssp HHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 445555542 25789999999999999999999999999999999999999999999987
No 72
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=94.21 E-value=0.055 Score=46.64 Aligned_cols=48 Identities=6% Similarity=0.136 Sum_probs=46.2
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHH
Q psy3827 257 TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304 (581)
Q Consensus 257 ~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 304 (581)
+.+|..++.-|--++.+.++.||.++..+|++.+|+||+..||..++|
T Consensus 31 ~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 31 IKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLR 78 (90)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 679999999999999999999999999999999999999999998877
No 73
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=94.01 E-value=0.048 Score=48.37 Aligned_cols=50 Identities=24% Similarity=0.255 Sum_probs=47.3
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHh
Q psy3827 256 DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 305 (581)
Q Consensus 256 d~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 305 (581)
+..+|.+++..|.-|+.+.++.|+.+|..+|++.+|+||+..||..|+|-
T Consensus 37 ~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 37 GVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999999874
No 74
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=93.89 E-value=0.057 Score=49.22 Aligned_cols=68 Identities=19% Similarity=0.151 Sum_probs=56.2
Q ss_pred hhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHH
Q psy3827 505 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 575 (581)
Q Consensus 505 ~lLI~K~pF~RLVrEI~~~~~~~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~r 575 (581)
.|.+|-.++.|+.++-. ....|+...|-..|-.+-|.+...++|-+...|.|++|.+|+|+||+||.+
T Consensus 25 gLqfPV~ri~R~Lk~~~---~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRT---TSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp TCSSCHHHHHHHHHHTS---CSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred CccCChHHHHHHHHHcc---cchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 45566666667665431 123589999999999999999999999999999999999999999999976
No 75
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=93.68 E-value=0.068 Score=49.49 Aligned_cols=50 Identities=24% Similarity=0.245 Sum_probs=47.9
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHh
Q psy3827 256 DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 305 (581)
Q Consensus 256 d~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 305 (581)
++.+|..++..|--++.+.++.||.++..+|++.+|+||+..||..++|-
T Consensus 37 ~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 37 GVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999883
No 76
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=93.13 E-value=0.12 Score=46.82 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=45.7
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHh
Q psy3827 257 TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 305 (581)
Q Consensus 257 ~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 305 (581)
-.||..+...+...+.+..|.|+.+|..++.+.+|+|+|..||--|++.
T Consensus 63 kRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr 111 (121)
T 2ly8_A 63 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 111 (121)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 4689999999999999999999999999999999999999999998773
No 77
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=92.72 E-value=0.052 Score=54.10 Aligned_cols=53 Identities=21% Similarity=0.272 Sum_probs=49.7
Q ss_pred cccccHHHHHHHHHHHHhhhhccchhhhhhhhcCCeeeeCcccHHHHHHHhcc
Q psy3827 527 DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 579 (581)
Q Consensus 527 ~~Rfq~~Al~aLQeAaEayLv~lFEda~lcA~HaKRVTI~~kDiqLa~rIrg~ 579 (581)
--|++..+.+.+.++.|.||-.+-.|+..+|-||+|-||++.|+.+|.+-.|.
T Consensus 176 VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~gr 228 (235)
T 2l5a_A 176 VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 228 (235)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcCC
Confidence 36999999999999999999999999999999999999999999999987664
No 78
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=92.12 E-value=0.087 Score=44.20 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=47.5
Q ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHh
Q psy3827 254 HPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 305 (581)
Q Consensus 254 hpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 305 (581)
.++..+++.|+.-|--..-+..-.+.++|..++.+.||.||.++|||-|.|+
T Consensus 21 ~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 21 KTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp CSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence 4678999999999998888888888899999999999999999999999886
No 79
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=89.76 E-value=0.27 Score=57.92 Aligned_cols=75 Identities=16% Similarity=0.304 Sum_probs=64.4
Q ss_pred cceeEeeeeecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcccchhHHHHHHHhhCchHHhhhhhhhh
Q psy3827 240 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEG 319 (581)
Q Consensus 240 esy~~YiykVLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLPgeLaKhAvseG 319 (581)
.-|-.-++||+.||||++.+...|+.-+++++--+.-.|+. ...-|--|+...|.-.+|.++.++|+.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (1049)
T 3ksy_A 21 GLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQ----------AQPRSASDVEERVQKSFPHPIDKWAIADA 90 (1049)
T ss_dssp SSSHHHHHHHHHHHCTTSBCCHHHHHHHHHHHHHHHHHHHH----------TCCCSHHHHHHHHHHHSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCccHhHHHHHHHHHHHHHHHHhc----------CCCccHHHHHHHHHHhCCCchHHHHHHHH
Confidence 35666789999999999999999999999999888877764 44678889999999999999999999997
Q ss_pred cchhh
Q psy3827 320 TKAVT 324 (581)
Q Consensus 320 tkAVt 324 (581)
-.|..
T Consensus 91 ~~~~~ 95 (1049)
T 3ksy_A 91 QSAIE 95 (1049)
T ss_dssp HHHHT
T ss_pred HHhhh
Confidence 65543
No 80
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=89.76 E-value=0.47 Score=40.22 Aligned_cols=64 Identities=22% Similarity=0.130 Sum_probs=53.3
Q ss_pred cchhHHHHHHhcCC------cccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHh
Q psy3827 25 FPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (581)
Q Consensus 25 FPVgRI~RlLk~~~------ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~ 88 (581)
+|.--+.|+.|+-. ...|++++|...|--..|....+++|-+..-|...++..|.|+|+++|.+
T Consensus 4 I~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 4 IRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp SCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 44445556666522 35799999999999999999999999998889899999999999999865
No 81
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=88.32 E-value=0.46 Score=44.73 Aligned_cols=69 Identities=22% Similarity=0.115 Sum_probs=59.5
Q ss_pred cCcccchhHHHHHHhcCC------cccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHhc
Q psy3827 21 AGLQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (581)
Q Consensus 21 AgLqFPVgRI~RlLk~~~------ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~n 89 (581)
.+|-+|.--+.|++||-. ...|+.++|...|--+.|....+++|-|..-|...++..|+|+||++|.+=
T Consensus 74 teLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 74 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp -CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 468888888888888632 256999999999999999999999999988888889999999999999763
No 82
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=87.89 E-value=0.57 Score=43.41 Aligned_cols=68 Identities=22% Similarity=0.131 Sum_probs=58.4
Q ss_pred cCcccchhHHHHHHhcCC------cccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHh
Q psy3827 21 AGLQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (581)
Q Consensus 21 AgLqFPVgRI~RlLk~~~------ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~ 88 (581)
.+|-+|.--+.|+++|-. ...|+.++|...|--+.|....+++|-+..-|...++..|+|+||++|.+
T Consensus 58 t~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 58 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp -CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 467788888888888632 35799999999999999999999999998888888999999999999865
No 83
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=86.49 E-value=0.77 Score=40.21 Aligned_cols=68 Identities=24% Similarity=0.222 Sum_probs=55.9
Q ss_pred cCcccchhHHHHHHhcCC--c-----ccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHh
Q psy3827 21 AGLQFPVGRIHRLLRKGN--Y-----AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (581)
Q Consensus 21 AgLqFPVgRI~RlLk~~~--y-----a~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~ 88 (581)
.+|-+|.--+.|+.|+-. + ..|+.++|...|.-..|....+++|-+..-|...++.-|+|+||++|.+
T Consensus 24 t~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 24 TDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred chhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 478888888888888632 1 5799999999999999999999999999999999999999999999964
No 84
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=86.31 E-value=1 Score=41.47 Aligned_cols=68 Identities=25% Similarity=0.249 Sum_probs=58.7
Q ss_pred cCcccchhHHHHHHhcCC----cccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHHHh
Q psy3827 21 AGLQFPVGRIHRLLRKGN----YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (581)
Q Consensus 21 AgLqFPVgRI~RlLk~~~----ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lAI~ 88 (581)
.+|-+|.--+.|++++-. -..|+.++|...|.-..|....+++|-+..-|..-++.-|.|+||++|.+
T Consensus 59 t~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 367788888888887631 24799999999999999999999999999999999999999999999975
No 85
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=86.02 E-value=1.2 Score=38.21 Aligned_cols=65 Identities=22% Similarity=0.379 Sum_probs=52.8
Q ss_pred ccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhh-CCcccchhhHHHHHhc
Q psy3827 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN-KKTRIIPRHLQLAIRN 89 (581)
Q Consensus 24 qFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~-kkkrItP~hL~lAI~n 89 (581)
.||=..|+|++.. .....++....+.++++--.+..||.|.|....... ....|.|.||+.|.+.
T Consensus 16 ~f~k~~vKrl~~~-~~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rr 81 (89)
T 1bh9_B 16 AFPKAAIKRLIQS-ITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRR 81 (89)
T ss_dssp CCCHHHHHHHHHH-HHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH-HcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Confidence 4677788888864 446688888888999999999999999998877754 4568999999998763
No 86
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=82.34 E-value=3.3 Score=35.26 Aligned_cols=67 Identities=18% Similarity=0.171 Sum_probs=55.2
Q ss_pred ccCcccchhHHHHHHhcCC--cccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHH
Q psy3827 20 RAGLQFPVGRIHRLLRKGN--YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA 86 (581)
Q Consensus 20 RAgLqFPVgRI~RlLk~~~--ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lA 86 (581)
.++..||-.-|.|+|+..- -.-||+..|-..++..|+-++.|.+..|...|...+...|.++||+..
T Consensus 8 ~~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki 76 (84)
T 4dra_E 8 GAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKV 76 (84)
T ss_dssp ---CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 4567899999999999432 235999999999999999999999999998888777778999999864
No 87
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=81.59 E-value=2.2 Score=36.01 Aligned_cols=65 Identities=20% Similarity=0.220 Sum_probs=55.5
Q ss_pred CcccchhHHHHHHhcCC--cccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHHH
Q psy3827 22 GLQFPVGRIHRLLRKGN--YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA 86 (581)
Q Consensus 22 gLqFPVgRI~RlLk~~~--ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~lA 86 (581)
+-.||-.-|+|+|+..- -.-||+..|-..++..|+-++.|.+..|...|...+...|.++||+..
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki 72 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKV 72 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHH
Confidence 45799999999999732 245999999999999999999999999999998888888999999873
No 88
>3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
Probab=80.94 E-value=0.63 Score=30.68 Aligned_cols=25 Identities=84% Similarity=1.042 Sum_probs=18.9
Q ss_pred ccchhhhhhcccCCCCCCCCCCccC
Q psy3827 463 RKQLATKAARKSAPATGGVKKPHRY 487 (581)
Q Consensus 463 rK~la~k~arks~p~~~~~kk~~r~ 487 (581)
+++++++++++++|..++++++||.
T Consensus 1 rK~la~Kaarks~p~~~g~kk~hR~ 25 (26)
T 3avr_B 1 RKQLATKAARXSAPATGGVKKPXXX 25 (26)
T ss_pred CcccccccccCCCCCCccccccCCC
Confidence 4667778888887888888887764
No 89
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=78.85 E-value=0.43 Score=45.05 Aligned_cols=21 Identities=95% Similarity=1.164 Sum_probs=12.5
Q ss_pred ccccccccCCCCCCCCccchh
Q psy3827 447 ARTKQTARKSTGGKAPRKQLA 467 (581)
Q Consensus 447 ARtKqtArkstggkaPrK~la 467 (581)
|||||+|||++|+|+|.+++.
T Consensus 1 ~~~~~~~r~s~~~K~~~~~~r 21 (159)
T 3a1b_A 1 ARTKQTARKSTGGKAPRKQLR 21 (159)
T ss_dssp CEEEECCCC-------CHHHH
T ss_pred CccccccccccCCCcchHHHH
Confidence 799999999999999999873
No 90
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=63.65 E-value=6.6 Score=34.31 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhhCCcccchhhHHHHHhccHHHHhhhcC
Q psy3827 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSG 99 (581)
Q Consensus 59 taEILELAgn~A~~~kkkrItP~hL~lAI~nDeEL~~Lf~~ 99 (581)
+.++|+.|-+.|...+...|+|+||-+|+-++++...++..
T Consensus 6 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~~ 46 (143)
T 1k6k_A 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEA 46 (143)
T ss_dssp HHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHHH
Confidence 35789999999999999999999999999988877677653
No 91
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=52.99 E-value=12 Score=32.80 Aligned_cols=33 Identities=30% Similarity=0.223 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhhCCcccchhhHHHHHhccHH
Q psy3827 60 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (581)
Q Consensus 60 aEILELAgn~A~~~kkkrItP~hL~lAI~nDeE 92 (581)
.++|+.|-+.|...+...|+|+||-+|+-++++
T Consensus 11 ~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~ 43 (148)
T 1khy_A 11 QLALADAQSLALGHDNQFIEPLHLMSALLNQEG 43 (148)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCC
Confidence 578999999999999999999999999877753
No 92
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=50.01 E-value=8.9 Score=34.05 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhhCCcccchhhHHHHHhccH
Q psy3827 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (581)
Q Consensus 59 taEILELAgn~A~~~kkkrItP~hL~lAI~nDe 91 (581)
+.++|+.|.+.|+..+...|.|+||-+|+-.++
T Consensus 12 a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~ 44 (145)
T 3fes_A 12 AKKAIDLAFESAKSLGHNIVGSEHILLGLLREE 44 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 357899999999999999999999999998764
No 93
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=48.32 E-value=10 Score=33.30 Aligned_cols=33 Identities=27% Similarity=0.307 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhhCCcccchhhHHHHHhccHH
Q psy3827 60 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (581)
Q Consensus 60 aEILELAgn~A~~~kkkrItP~hL~lAI~nDeE 92 (581)
.++|+.|-+.|...+...|+|+||-+|+-++++
T Consensus 11 ~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~ 43 (150)
T 2y1q_A 11 QKVLALAQEEALRLGHNNIGTEHILLGLVREGE 43 (150)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCC
Confidence 578999999999999999999999999876654
No 94
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=48.26 E-value=10 Score=33.59 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhhCCcccchhhHHHHHhcc
Q psy3827 60 AEVLELAGNAARDNKKTRIIPRHLQLAIRND 90 (581)
Q Consensus 60 aEILELAgn~A~~~kkkrItP~hL~lAI~nD 90 (581)
.++|+.|.+.|+..+...|+|+||-+|+-.|
T Consensus 12 ~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~ 42 (146)
T 3fh2_A 12 RRVIVLAQEEARMLNHNYIGTEHILLGLIHE 42 (146)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHhC
Confidence 5789999999999999999999999999765
No 95
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=41.77 E-value=16 Score=32.40 Aligned_cols=40 Identities=38% Similarity=0.479 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhhCCcccchhhHHHHHhccHH--HHhhhc
Q psy3827 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE--LNKLLS 98 (581)
Q Consensus 59 taEILELAgn~A~~~kkkrItP~hL~lAI~nDeE--L~~Lf~ 98 (581)
+.++|+.|...|+..+...|+++||-+|+-.|++ ...+++
T Consensus 86 ~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~ 127 (145)
T 3fes_A 86 SKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILN 127 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHH
Confidence 4578899999999999999999999999986543 555664
No 96
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=41.36 E-value=19 Score=33.43 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHhhhCCcccchhhHHHHHhccHH
Q psy3827 49 VYLAAVMEYLAA---EVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (581)
Q Consensus 49 VyLAAVLEYLta---EILELAgn~A~~~kkkrItP~hL~lAI~nDeE 92 (581)
+.+..+++-+|. ++|+.|.+.|...+...|.|+||-+|+-.|++
T Consensus 16 ~~l~~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~ 62 (171)
T 3zri_A 16 IELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPL 62 (171)
T ss_dssp CCHHHHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTT
T ss_pred hhHHHHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccC
Confidence 456677777664 69999999999999999999999999987653
No 97
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=40.48 E-value=20 Score=31.63 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhhCCcccchhhHHHHHhccH--HHHhhhc
Q psy3827 60 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLLS 98 (581)
Q Consensus 60 aEILELAgn~A~~~kkkrItP~hL~lAI~nDe--EL~~Lf~ 98 (581)
.++|+.|...|+..+...|+++||-+|+-.|+ ....+++
T Consensus 87 ~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~ 127 (146)
T 3fh2_A 87 KKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLV 127 (146)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHH
Confidence 57899999999999999999999999998654 4556665
No 98
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=37.65 E-value=12 Score=34.50 Aligned_cols=25 Identities=72% Similarity=1.092 Sum_probs=18.8
Q ss_pred cchhhhh-hcccCCCCCCCCCCccCC
Q psy3827 464 KQLATKA-ARKSAPATGGVKKPHRYR 488 (581)
Q Consensus 464 K~la~k~-arks~p~~~~~kk~~r~r 488 (581)
++++.+. +.||+|.++++|+|||||
T Consensus 111 KeL~~kak~~Ks~p~tgGvkk~hr~r 136 (136)
T 2k3y_A 111 KRLANEAGSTGSAPATGGVXKPHRYR 136 (136)
T ss_dssp HHHHHHSCSCCCSTTCTTSCCCSSCC
T ss_pred HHHHHHHHhhccCCCCCCccCCCcCC
Confidence 4454444 357889999999999997
No 99
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=33.15 E-value=38 Score=31.42 Aligned_cols=32 Identities=16% Similarity=0.103 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHh-hhCCcccchhhHHHHHhccH
Q psy3827 60 AEVLELAGNAAR-DNKKTRIIPRHLQLAIRNDE 91 (581)
Q Consensus 60 aEILELAgn~A~-~~kkkrItP~hL~lAI~nDe 91 (581)
.++|+.|..+|+ ..+...|.++||-+|+-.|+
T Consensus 104 ~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~ 136 (171)
T 3zri_A 104 VELLQEAWLLSSTELEQAELRSGAIFLAALTRA 136 (171)
T ss_dssp HHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhCh
Confidence 467999999999 99999999999999999887
No 100
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=32.93 E-value=49 Score=28.74 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhhCCcccchhhHHHHHhc-cHHHHhhhc
Q psy3827 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRN-DEELNKLLS 98 (581)
Q Consensus 59 taEILELAgn~A~~~kkkrItP~hL~lAI~n-DeEL~~Lf~ 98 (581)
..++|+.|...|+..+...|+++||-+|+-. |.....+++
T Consensus 87 ~~~vl~~A~~~a~~~~~~~i~~ehlLlall~~~~~~~~~L~ 127 (148)
T 1khy_A 87 LVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILK 127 (148)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHcCCcHHHHHHH
Confidence 4568899999999999999999999999984 344455554
No 101
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=32.74 E-value=34 Score=29.64 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhhCCcccchhhHHHHHhccHH--HHhhhc
Q psy3827 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE--LNKLLS 98 (581)
Q Consensus 59 taEILELAgn~A~~~kkkrItP~hL~lAI~nDeE--L~~Lf~ 98 (581)
+.++|+.|...|+..+...|.++||-+|+-.+.+ ...+++
T Consensus 84 ~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~ 125 (143)
T 1k6k_A 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLR 125 (143)
T ss_dssp HHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHH
Confidence 4578999999999989999999999999987653 345554
No 102
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=27.20 E-value=73 Score=27.06 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=45.5
Q ss_pred ecccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcc-CCcccchhHHHHHHHhhC
Q psy3827 249 VLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYN-KRSTITSREIQTAVRLLL 307 (581)
Q Consensus 249 VLKQVhpd~gISskam~imnsfvnDiferIA~EAs~La~~n-kr~TitsreIqtAvrLlL 307 (581)
+..++. +..+|....-+|..+-.-+.-.|.++|-.+..-. ....|.++.|+.|+|.+-
T Consensus 25 l~~~~~-~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 25 LIQSIT-GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp HHHHHH-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHc-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 344543 6788888888898888888888888888887654 456999999999998764
No 103
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=26.86 E-value=37 Score=29.65 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhhCCcccchhhHHHHHhccH
Q psy3827 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (581)
Q Consensus 59 taEILELAgn~A~~~kkkrItP~hL~lAI~nDe 91 (581)
..++|+.|...|+..+...|.++||-+|+-.+.
T Consensus 84 ~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~ 116 (150)
T 2y1q_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREG 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCC
Confidence 457899999999999999999999999997654
No 104
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=21.85 E-value=1.1e+02 Score=24.36 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=30.5
Q ss_pred HHHHHHHHhhhhhccCCcccchhHHHHHHHhhCch
Q psy3827 275 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 309 (581)
Q Consensus 275 ferIA~EAs~La~~nkr~TitsreIqtAvrLlLPg 309 (581)
.+.++.||+..+-...+..||..++..|++-+.|+
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccC
Confidence 46688899999988888999999999999999886
No 105
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=20.64 E-value=72 Score=35.45 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhhCCcccchhhHHHHHhccHHHHhhhc
Q psy3827 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 98 (581)
Q Consensus 59 taEILELAgn~A~~~kkkrItP~hL~lAI~nDeEL~~Lf~ 98 (581)
+.++|+.|-+.|+..+...|+|+||-+|+-+|.+...++.
T Consensus 6 a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL~ 45 (758)
T 1r6b_X 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (758)
T ss_dssp HHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHHH
Confidence 3578999999999999999999999999998887766664
No 106
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=20.38 E-value=1.5e+02 Score=27.63 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=48.2
Q ss_pred ccchhHHHHHHhcCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchhhHHH
Q psy3827 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 85 (581)
Q Consensus 24 qFPVgRI~RlLk~~~ya~RVs~sApVyLAAVLEYLtaEILELAgn~A~~~kkkrItP~hL~l 85 (581)
.+++.++++++|+. ..-=|..+-.-=+..++|--..++|+.|-..|+.|++.-|.|+||-+
T Consensus 2 vm~~~~~e~lFR~a-a~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPI 62 (148)
T 1wwi_A 2 LMKVAEFERLFRQA-AGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPI 62 (148)
T ss_dssp CSCHHHHHHHHHHH-HCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCC
T ss_pred cCCHHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCc
Confidence 47889999999962 22345555666677788888899999999999999999999998753
Done!