RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3827
(581 letters)
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 95
Score = 195 bits (498), Expect = 2e-61
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 487 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL 546
YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL
Sbjct: 1 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL 60
Query: 547 VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 581
VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 61 VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 95
>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 92
Score = 187 bits (476), Expect = 3e-58
Identities = 86/92 (93%), Positives = 90/92 (97%)
Query: 238 RKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSR 297
RKESY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSR
Sbjct: 1 RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSR 60
Query: 298 EIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 329
EIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS
Sbjct: 61 EIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 92
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 106
Score = 182 bits (464), Expect = 3e-56
Identities = 93/101 (92%), Positives = 98/101 (97%)
Query: 13 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD 72
K+K+RSSRAGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARD
Sbjct: 1 KAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARD 60
Query: 73 NKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 113
NKKTRIIPRHLQLAIRNDEELNKLL VTIAQGGVLPNIQA
Sbjct: 61 NKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQA 101
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 177 bits (450), Expect = 3e-54
Identities = 65/99 (65%), Positives = 81/99 (81%)
Query: 15 KTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNK 74
+RS++AG+ FPVGR+ R ++KG+ R+G GAPVY+AAV+EYL AE+LELA NAARDNK
Sbjct: 2 TSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNK 61
Query: 75 KTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 113
K R+ PRH+ LA+ NDEELN+LL GVTIA GGVLPNI
Sbjct: 62 KGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHP 100
Score = 34.0 bits (78), Expect = 0.008
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 246 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304
+ + +K+ HP + A M + + + I + A NK+ +T R I AV
Sbjct: 17 MLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 75
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant
H2A.Z [TaxId: 9606]}
Length = 103
Score = 158 bits (400), Expect = 4e-47
Identities = 64/101 (63%), Positives = 76/101 (75%), Gaps = 2/101 (1%)
Query: 14 SKTRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARD 72
+ +RS RAGLQFPVGRIHR L+ + RVGA A VY AA++EYL AEVLELAGNA++D
Sbjct: 1 AVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD 60
Query: 73 NKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 113
K RI PRHLQLAIR DEEL+ L+ TIA GGV+P+I
Sbjct: 61 LKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHK 100
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 148 bits (376), Expect = 1e-42
Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 3 GRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEV 62
+ A++ + R R L PV +IH LL++ ++ VY+ AV+EY++A++
Sbjct: 78 DKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEV-LGYKIDHQVSVYIVAVLEYISADI 136
Query: 63 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 97
L+LAGN R+ + I + +++A+ D+ L +
Sbjct: 137 LKLAGNYVRNIRHYEITKQDIKVAMCADKVLMDMF 171
Score = 90.2 bits (224), Expect = 1e-21
Identities = 14/97 (14%), Positives = 36/97 (37%), Gaps = 10/97 (10%)
Query: 232 KKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKR 291
++ + + + KV QVHP + A+ + + + + R
Sbjct: 8 EENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQAQPR------- 60
Query: 292 STITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 328
++ +++ V+ P + K A+++ A+ K
Sbjct: 61 ---SASDVEERVQKSFPHPIDKWAIADAQSAIEKRKR 94
Score = 40.5 bits (95), Expect = 1e-04
Identities = 10/83 (12%), Positives = 27/83 (32%), Gaps = 5/83 (6%)
Query: 493 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFED 552
A I + ++ L + L++E+ + + + E + +
Sbjct: 85 AQSAIEKRKRRNPLSLPVEKIHPLLKEVLGY-----KIDHQVSVYIVAVLEYISADILKL 139
Query: 553 TNLCAIHAKRVTIMPKDIQLARR 575
+ + I +DI++A
Sbjct: 140 AGNYVRNIRHYEITKQDIKVAMC 162
Score = 29.4 bits (66), Expect = 0.67
Identities = 6/46 (13%), Positives = 17/46 (36%)
Query: 259 VSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304
+ + + + + I I + + IT ++I+ A+
Sbjct: 117 IDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAMC 162
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 88.6 bits (220), Expect = 2e-22
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 83
+FP RI ++++ +V A PV ++ +E +L+ A + + HL
Sbjct: 2 RFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 61
Query: 84 QLAI 87
+ I
Sbjct: 62 KQCI 65
Score = 35.9 bits (83), Expect = 7e-04
Identities = 7/58 (12%), Positives = 25/58 (43%)
Query: 246 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAV 303
I K+++ V++ I++ + E + ++ ++ T+T+ ++ +
Sbjct: 8 IKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCI 65
Score = 32.0 bits (73), Expect = 0.018
Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 510 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 569
+ P R +++I Q + + ++ + + A E +L L + T+
Sbjct: 2 RFPPAR-IKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSH 60
Query: 570 IQLA 573
++
Sbjct: 61 LKQC 64
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 86.4 bits (214), Expect = 1e-20
Identities = 11/89 (12%), Positives = 34/89 (38%)
Query: 246 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 305
I ++ +Q + +S A + FV + E +A + + + + T+ ++ +
Sbjct: 7 IERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADV 66
Query: 306 LLPGELAKHAVSEGTKAVTKYTSSKCRAK 334
L+ + + +A + + +
Sbjct: 67 LMVEGVEDYDGELFGRATVRRILKRAGIE 95
Score = 65.2 bits (159), Expect = 3e-13
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 14 SKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 73
+ G F + R+L++ ER + A ++ E+ E A A ++
Sbjct: 69 VEGVEDYDGELFGRATVRRILKRAG-IERASSDAVDLYNKLICRATEELGEKAAEYADED 127
Query: 74 KKTRIIPRHLQLAIRN 89
+ + ++ AI
Sbjct: 128 GRKTVQGEDVEKAITY 143
Score = 56.7 bits (137), Expect = 3e-10
Identities = 13/65 (20%), Positives = 25/65 (38%)
Query: 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 83
+ P I R+ R+G R+ A + + +A V A + + K ++ HL
Sbjct: 1 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHL 60
Query: 84 QLAIR 88
+
Sbjct: 61 KALAD 65
Score = 55.6 bits (134), Expect = 7e-10
Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 5/89 (5%)
Query: 485 HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEA 544
+ + + + L + +R+++ R S AV +
Sbjct: 57 EEHLKALADVLMVEGVEDYDGELFGRATVRRILKR-----AGIERASSDAVDLYNKLICR 111
Query: 545 YLVGLFEDTNLCAIHAKRVTIMPKDIQLA 573
L E A R T+ +D++ A
Sbjct: 112 ATEELGEKAAEYADEDGRKTVQGEDVEKA 140
Score = 40.9 bits (96), Expect = 9e-05
Identities = 24/136 (17%), Positives = 56/136 (41%), Gaps = 10/136 (7%)
Query: 180 GDSLDVVTEYFPVPLGASFSESLSSLTTAAGKSSGKA--VKKAGKAQKNIAKSDKKKKHR 237
D+ D + + F + + + S+ A+GK + +K D +
Sbjct: 22 QDAKDTIYD-FVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVEDYDGELF 80
Query: 238 RKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSR 297
+ + + ++LK+ + SS A+ + N + E + +++ A + R T+
Sbjct: 81 GRAT----VRRILKRAGIER-ASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGE 135
Query: 298 EIQTAVRLLLP--GEL 311
+++ A+ +P GEL
Sbjct: 136 DVEKAITYSMPKGGEL 151
Score = 33.2 bits (76), Expect = 0.037
Identities = 6/69 (8%), Positives = 20/69 (28%), Gaps = 4/69 (5%)
Query: 512 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 571
+R+ R+ + R A + + + + + T+M + ++
Sbjct: 6 AIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLK 61
Query: 572 LARRIRGER 580
+
Sbjct: 62 ALADVLMVE 70
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma
(Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 81.0 bits (200), Expect = 1e-19
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 26 PVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 85
P+ RI ++++ + + A APV A + E+ A DNK+ + + +
Sbjct: 2 PLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAM 61
Query: 86 AIRNDEELNKLLSGV 100
AI ++ + L+ V
Sbjct: 62 AITKFDQFDFLIDIV 76
Score = 31.4 bits (71), Expect = 0.038
Identities = 11/59 (18%), Positives = 22/59 (37%)
Query: 246 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304
I K++K +S++A + + + NKR T+ +I A+
Sbjct: 6 IKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT 64
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus
horikoshii) [TaxId: 53953]}
Length = 66
Score = 41.3 bits (97), Expect = 9e-06
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 511 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 570
LP + R I + R A L E E Y + + + A HA R T+ +DI
Sbjct: 3 LPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDI 60
Query: 571 QLA 573
+LA
Sbjct: 61 KLA 63
Score = 30.1 bits (68), Expect = 0.090
Identities = 10/59 (16%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 246 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304
+ +++++ VS +A ++ ++ + IA ++ A + R T+ +I+ A++
Sbjct: 8 VDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 65
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus
fervidus, histone A [TaxId: 2180]}
Length = 68
Score = 39.0 bits (91), Expect = 8e-05
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 512 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 571
P R+++ R A +AL + E + + A HA R TI +DI+
Sbjct: 8 PIGRIIKNAG-----AERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIE 62
Query: 572 LA 573
LA
Sbjct: 63 LA 64
Score = 31.6 bits (72), Expect = 0.028
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 246 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 305
I +++K VS A + + ++ E IA+E+ +LA + R TI + +I+ A ++
Sbjct: 9 IGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 67
Query: 306 L 306
Sbjct: 68 F 68
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta
(Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 37.5 bits (87), Expect = 4e-04
Identities = 13/63 (20%), Positives = 23/63 (36%)
Query: 511 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 570
LP + R + + A +QE ++ + + + KR TI +DI
Sbjct: 3 LPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDI 62
Query: 571 QLA 573
A
Sbjct: 63 LFA 65
Score = 32.9 bits (75), Expect = 0.014
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 246 IYKVLKQVHPDTG-VSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304
+ +++K P TG ++ A + V++ I +E+S H KR TI +I A+
Sbjct: 8 VARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 67
Score = 32.1 bits (73), Expect = 0.029
Identities = 7/73 (9%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Query: 23 LQFPVGRIHRLLRKG-NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 81
+ P+ + R+++ ++ A + + + + A K+ I
Sbjct: 1 IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGE 60
Query: 82 HLQLAIRNDEELN 94
+ A+ +
Sbjct: 61 DILFAMSTLGFDS 73
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 35.7 bits (82), Expect = 0.005
Identities = 8/63 (12%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 511 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 570
+P + ++ ++ ++R + A + ++ + + N +++ TI P+ +
Sbjct: 5 IPRAA-INKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHV 63
Query: 571 QLA 573
A
Sbjct: 64 IQA 66
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 82
Score = 32.8 bits (75), Expect = 0.015
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 529 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 579
R + + +L + D HAKR T+ D+ A + +G
Sbjct: 26 RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 76
Score = 27.4 bits (61), Expect = 1.0
Identities = 7/46 (15%), Positives = 19/46 (41%)
Query: 259 VSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304
+S + E + ++ + KR T+T+ ++ A++
Sbjct: 27 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 72
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 89
Score = 32.5 bits (74), Expect = 0.020
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 246 IYKVLKQVHPDTG-VSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 304
I +++K+ P++ VS +A + + + + + S+ LAH TIT+++I +
Sbjct: 5 IGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLT 64
Query: 305 LL 306
L
Sbjct: 65 EL 66
Score = 32.1 bits (73), Expect = 0.029
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 514 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 573
RL++E + A A+ A+ + + + + A TI KDI
Sbjct: 6 GRLIKEALPE---SASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQT 62
>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 327
Score = 33.5 bits (76), Expect = 0.055
Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 6/146 (4%)
Query: 149 EHLENATG-LLVDEPGDTLDSTSTRQTTDGGLGDSLDVVTEYFPVPLGASFSESLSSLTT 207
HL G +L+D+P LD +T + L + + + L A +
Sbjct: 105 RHLRAILGPILLDQP---LDGVTTSLPSPEQLKGKILLKGKKLGGLLPAGGENGSEATDV 161
Query: 208 AAGKSSGKAVKKAGKAQ-KNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSI 266
+ + + +A ++Q ++ K DK K IY V G S +A
Sbjct: 162 SDEVEAAEMEDEAVRSQVQHKPKEDKLKLVPELSDMIIYCKSVHFGGFSSPGTSGQAFYE 221
Query: 267 MNSFVNDIFERIAAESSR-LAHYNKR 291
M SF R+ ES +N
Sbjct: 222 MASFSESRALRLLQESGNGFVRHNVS 247
>d1tafa_ a.22.1.3 (A:) TAF(II)42 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 68
Score = 30.0 bits (68), Expect = 0.11
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 515 RLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 573
+++ I ++ ++ V L E + Y+ + +D + A HA++ TI D++LA
Sbjct: 5 QVIMSILKELNVQ-EYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLA 62
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone
fold domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 29.7 bits (67), Expect = 0.15
Identities = 10/55 (18%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 250 LKQVHPDTGVSSKA----MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQ 300
+++V P+ + + I + F+ + + +LA + K ST+ +++Q
Sbjct: 13 VREVDPNEQLDEDVEEMLLQIADDFIESVVTA----ACQLARHRKSSTLEVKDVQ 63
>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM,
C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 75
Score = 26.2 bits (58), Expect = 2.7
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 53 AVMEYLAAEVLELAGNAARDNKKTRIIP 80
++E A +V+ + A + + R++P
Sbjct: 24 HLLETGANDVMVVKPCAGSLDDRERLLP 51
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock
protein F84.1) {Escherichia coli [TaxId: 562]}
Length = 139
Score = 26.6 bits (58), Expect = 5.2
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92
L A + A + I P HL A+ N E
Sbjct: 7 FQLALADAQSLALGHDNQFIEPLHLMSALLNQEG 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.360
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,947,013
Number of extensions: 87991
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 42
Length of query: 581
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 491
Effective length of database: 1,171,896
Effective search space: 575400936
Effective search space used: 575400936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.0 bits)