BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3828
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NQB|C Chain C, Drosophila Nucleosome Structure
pdb|2NQB|G Chain G, Drosophila Nucleosome Structure
Length = 123
Score = 187 bits (476), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 58 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 117
LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH
Sbjct: 22 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 81
Query: 118 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 148
LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA
Sbjct: 82 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 112
>pdb|2PYO|C Chain C, Drosophila Nucleosome Core
pdb|2PYO|G Chain G, Drosophila Nucleosome Core
Length = 120
Score = 187 bits (475), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 58 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 117
LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH
Sbjct: 22 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 81
Query: 118 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 148
LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA
Sbjct: 82 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 112
>pdb|2PYO|D Chain D, Drosophila Nucleosome Core
pdb|2PYO|H Chain H, Drosophila Nucleosome Core
Length = 122
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 93/107 (86%), Positives = 95/107 (88%)
Query: 259 QKNIAXXXXXXXXXXXESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESS 318
QKNI ESYAIYIYKVLKQVHPDTG+SSKAMSIMNSFVNDIFERIAAE+S
Sbjct: 16 QKNITKTDKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEAS 75
Query: 319 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 365
RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 76 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 122
>pdb|2NQB|D Chain D, Drosophila Nucleosome Structure
pdb|2NQB|H Chain H, Drosophila Nucleosome Structure
Length = 123
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 92/107 (85%), Positives = 94/107 (87%)
Query: 259 QKNIAXXXXXXXXXXXESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESS 318
QKNI ESYAIYIY VLKQVHPDTG+SSKAMSIMNSFVNDIFERIAAE+S
Sbjct: 17 QKNITKTDKKKKRKRKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEAS 76
Query: 319 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 365
RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 77 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>pdb|3C9K|B Chain B, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|F Chain F, Model Of Histone Octamer Tubular Crystals
Length = 125
Score = 181 bits (458), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 86/91 (94%), Positives = 90/91 (98%)
Query: 275 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 334
ESY+IY+YKVLKQVHPDTG+SSKAMSIMNSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 35 ESYSIYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 94
Query: 335 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 365
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 95 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 125
>pdb|1S32|D Chain D, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|H Chain H, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|3LJA|D Chain D, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|H Chain H, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3KXB|D Chain D, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|H Chain H, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3MVD|D Chain D, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|H Chain H, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3O62|D Chain D, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|H Chain H, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3TU4|D Chain D, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|H Chain H, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|D Chain D, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|H Chain H, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|D Chain D, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|H Chain H, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|D Chain D, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|H Chain H, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|D Chain D, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|H Chain H, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|D Chain D, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|H Chain H, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
Length = 122
Score = 181 bits (458), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 275 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 334
ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 32 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 91
Query: 335 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 365
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 92 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 122
>pdb|2F8N|H Chain H, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 123
Score = 181 bits (458), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 275 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 334
ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 33 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 92
Query: 335 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 365
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 93 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 123
>pdb|3C1B|D Chain D, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|H Chain H, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|D Chain D, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|H Chain H, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 125
Score = 180 bits (457), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 275 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 334
ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 35 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 94
Query: 335 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 365
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 95 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 125
>pdb|1ZLA|D Chain D, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|H Chain H, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
Length = 125
Score = 180 bits (457), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 275 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 334
ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 35 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 94
Query: 335 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 365
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 95 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 125
>pdb|1KX3|D Chain D, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|H Chain H, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|D Chain D, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|H Chain H, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|D Chain D, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|H Chain H, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1M18|D Chain D, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|H Chain H, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|D Chain D, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|H Chain H, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|D Chain D, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|H Chain H, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1ZBB|D Chain D, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|H Chain H, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|DD Chain d, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|HH Chain h, Structure Of The 4_601_167 Tetranucleosome
pdb|2FJ7|D Chain D, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|H Chain H, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2NZD|D Chain D, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|H Chain H, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3B6F|D Chain D, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|H Chain H, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|D Chain D, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|H Chain H, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3KUY|D Chain D, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|H Chain H, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3LEL|D Chain D, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|H Chain H, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|N Chain N, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|R Chain R, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3MGP|D Chain D, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|H Chain H, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|D Chain D, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|H Chain H, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|D Chain D, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|H Chain H, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|D Chain D, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|H Chain H, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3LZ0|D Chain D, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|H Chain H, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|D Chain D, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|H Chain H, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3MNN|D Chain D, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|H Chain H, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3UT9|D Chain D, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|H Chain H, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|D Chain D, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|H Chain H, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|D Chain D, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|H Chain H, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
Length = 125
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 275 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 334
ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 35 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 94
Query: 335 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 365
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 95 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 125
>pdb|1F66|D Chain D, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|H Chain H, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 126
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 275 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 334
ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 36 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 95
Query: 335 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 365
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 126
>pdb|1P34|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 125
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 275 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 334
ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 35 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 94
Query: 335 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 365
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 95 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 125
>pdb|1AOI|D Chain D, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|H Chain H, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 99
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 275 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 334
ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 9 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 68
Query: 335 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 365
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 69 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 99
>pdb|3KWQ|D Chain D, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|H Chain H, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
Length = 93
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 275 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 334
ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 3 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 62
Query: 335 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 365
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 63 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 93
>pdb|1EQZ|A Chain A, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|E Chain E, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|A Chain A, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|E Chain E, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|A Chain A, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|E Chain E, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2ARO|A Chain A, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|E Chain E, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
Length = 129
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 88/91 (96%)
Query: 58 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 117
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 83
Query: 118 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 148
LQLAIRNDEELNKLL VTIAQGGVLPNIQA
Sbjct: 84 LQLAIRNDEELNKLLGKVTIAQGGVLPNIQA 114
>pdb|2HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein
pdb|3C9K|A Chain A, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|E Chain E, Model Of Histone Octamer Tubular Crystals
Length = 128
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 88/91 (96%)
Query: 58 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 117
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 118 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 148
LQLAIRNDEELNKLL VTIAQGGVLPNIQA
Sbjct: 83 LQLAIRNDEELNKLLGKVTIAQGGVLPNIQA 113
>pdb|1EQZ|B Chain B, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|F Chain F, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|B Chain B, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|F Chain F, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|B Chain B, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|F Chain F, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2ARO|B Chain B, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|F Chain F, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
Length = 126
Score = 178 bits (451), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 275 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 334
ESY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 335 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 365
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>pdb|2HIO|B Chain B, Histone Octamer (Chicken), Chromosomal Protein
Length = 125
Score = 178 bits (451), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 275 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 334
ESY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 35 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 94
Query: 335 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 365
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 95 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 125
>pdb|3C1B|C Chain C, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|G Chain G, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|C Chain C, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|G Chain G, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 129
Score = 178 bits (451), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 83/91 (91%), Positives = 88/91 (96%)
Query: 58 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 117
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 118 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 148
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+
Sbjct: 83 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQS 113
>pdb|1U35|D Chain D, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|H Chain H, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|2F8N|D Chain D, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 126
Score = 178 bits (451), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 84/91 (92%), Positives = 90/91 (98%)
Query: 275 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 334
ESY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA+E+SRLAHYNKRSTITSRE+
Sbjct: 36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREV 95
Query: 335 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 365
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>pdb|1ZBB|C Chain C, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|G Chain G, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|CC Chain c, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|GG Chain g, Structure Of The 4_601_167 Tetranucleosome
pdb|2FJ7|C Chain C, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|G Chain G, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|3LJA|C Chain C, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|G Chain G, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3KXB|C Chain C, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|G Chain G, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3MVD|C Chain C, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|G Chain G, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3TU4|C Chain C, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|G Chain G, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|C Chain C, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|G Chain G, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|C Chain C, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|G Chain G, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|C Chain C, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|G Chain G, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|C Chain C, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|G Chain G, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|C Chain C, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|G Chain G, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3UT9|C Chain C, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|G Chain G, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|C Chain C, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|G Chain G, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|C Chain C, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|G Chain G, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
Length = 129
Score = 177 bits (450), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 83/91 (91%), Positives = 88/91 (96%)
Query: 58 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 117
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 118 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 148
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+
Sbjct: 83 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQS 113
>pdb|1M18|C Chain C, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|G Chain G, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|C Chain C, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|G Chain G, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|C Chain C, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|G Chain G, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1P34|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 129
Score = 177 bits (450), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 83/91 (91%), Positives = 88/91 (96%)
Query: 58 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 117
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 118 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 148
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+
Sbjct: 83 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQS 113
>pdb|2CV5|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Length = 130
Score = 177 bits (449), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 84/91 (92%), Positives = 88/91 (96%)
Query: 58 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 117
LQFPVGR+HRLLRKGNY+ERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 24 LQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 83
Query: 118 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 148
LQLAIRNDEELNKLL VTIAQGGVLPNIQA
Sbjct: 84 LQLAIRNDEELNKLLGRVTIAQGGVLPNIQA 114
>pdb|3A6N|C Chain C, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|G Chain G, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3AFA|C Chain C, The Human Nucleosome Structure
pdb|3AFA|G Chain G, The Human Nucleosome Structure
pdb|3AV1|C Chain C, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|G Chain G, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV2|C Chain C, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|G Chain G, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AN2|C Chain C, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|G Chain G, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AYW|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AZE|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZF|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZG|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZH|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZI|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZJ|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZK|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZL|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZM|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZN|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 133
Score = 177 bits (449), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 84/91 (92%), Positives = 88/91 (96%)
Query: 58 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 117
LQFPVGR+HRLLRKGNY+ERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 27 LQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 86
Query: 118 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 148
LQLAIRNDEELNKLL VTIAQGGVLPNIQA
Sbjct: 87 LQLAIRNDEELNKLLGRVTIAQGGVLPNIQA 117
>pdb|3A6N|D Chain D, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|H Chain H, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3AFA|D Chain D, The Human Nucleosome Structure
pdb|3AFA|H Chain H, The Human Nucleosome Structure
pdb|3AV1|D Chain D, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|H Chain H, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV2|D Chain D, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|H Chain H, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AYW|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AZE|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZF|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZG|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZH|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZI|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZJ|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZK|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZL|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZM|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZN|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 129
Score = 177 bits (449), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 84/91 (92%), Positives = 89/91 (97%)
Query: 275 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 334
ESY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 39 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 98
Query: 335 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 365
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 99 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 129
>pdb|2F8N|K Chain K, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 149
Score = 177 bits (449), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 84/91 (92%), Positives = 88/91 (96%)
Query: 58 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 117
LQFPVGR+HRLLRKGNY+ERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 43 LQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 102
Query: 118 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 148
LQLAIRNDEELNKLL VTIAQGGVLPNIQA
Sbjct: 103 LQLAIRNDEELNKLLGRVTIAQGGVLPNIQA 133
>pdb|2CV5|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Length = 126
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 83/91 (91%), Positives = 89/91 (97%)
Query: 275 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 334
ESY++Y+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 335 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 365
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 126
>pdb|1S32|C Chain C, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|G Chain G, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|2NZD|C Chain C, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|G Chain G, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3KUY|C Chain C, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|G Chain G, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3MGP|C Chain C, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|G Chain G, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|C Chain C, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|G Chain G, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|C Chain C, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|G Chain G, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|C Chain C, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|G Chain G, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3LZ0|C Chain C, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|G Chain G, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|C Chain C, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|G Chain G, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3MNN|C Chain C, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|G Chain G, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
Length = 119
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/91 (91%), Positives = 88/91 (96%)
Query: 58 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 117
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 118 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 148
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+
Sbjct: 83 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQS 113
>pdb|1AOI|C Chain C, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|G Chain G, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 116
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/91 (91%), Positives = 88/91 (96%)
Query: 58 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 117
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 20 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 79
Query: 118 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 148
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+
Sbjct: 80 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQS 110
>pdb|2XQL|B Chain B, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|D Chain D, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|F Chain F, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|H Chain H, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|J Chain J, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5)
Length = 90
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/90 (93%), Positives = 88/90 (97%)
Query: 276 SYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQ 335
SY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQ
Sbjct: 1 SYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQ 60
Query: 336 TAVRLLLPGELAKHAVSEGTKAVTKYTSSK 365
TAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 61 TAVRLLLPGELAKHAVSEGTKAVTKYTSSK 90
>pdb|3KWQ|C Chain C, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|G Chain G, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
Length = 107
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/91 (91%), Positives = 88/91 (96%)
Query: 58 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 117
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 10 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 69
Query: 118 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 148
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+
Sbjct: 70 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQS 100
>pdb|1KX3|C Chain C, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|G Chain G, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|C Chain C, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|G Chain G, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|C Chain C, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|G Chain G, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|3B6F|C Chain C, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|G Chain G, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|C Chain C, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|G Chain G, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3LEL|C Chain C, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|G Chain G, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|M Chain M, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|Q Chain Q, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3O62|C Chain C, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|G Chain G, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
Length = 128
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 83/91 (91%), Positives = 88/91 (96%)
Query: 58 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 117
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 118 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 148
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+
Sbjct: 83 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQS 113
>pdb|1ZLA|C Chain C, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|G Chain G, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
Length = 129
Score = 174 bits (440), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 81/91 (89%), Positives = 86/91 (94%)
Query: 58 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 117
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGN RDNKKTRIIPRH
Sbjct: 23 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNWERDNKKTRIIPRH 82
Query: 118 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 148
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+
Sbjct: 83 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQS 113
>pdb|3AN2|D Chain D, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|H Chain H, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
Length = 129
Score = 172 bits (435), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 82/91 (90%), Positives = 87/91 (95%)
Query: 275 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 334
ESY+IY+YKVLKQVHPDTG+SSKA I NSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 39 ESYSIYVYKVLKQVHPDTGISSKAXGIXNSFVNDIFERIAGEASRLAHYNKRSTITSREI 98
Query: 335 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 365
QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 99 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 129
>pdb|1HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 95
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/87 (93%), Positives = 84/87 (96%)
Query: 58 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 117
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 9 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 68
Query: 118 LQLAIRNDEELNKLLSGVTIAQGGVLP 144
LQLAIRNDEELNKLL VTIAQGGVLP
Sbjct: 69 LQLAIRNDEELNKLLGKVTIAQGGVLP 95
>pdb|1HIO|B Chain B, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 90
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 81/90 (90%), Positives = 86/90 (95%)
Query: 276 SYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQ 335
SY+IY+YKVLKQVHPDTG+SSKAM MNSFVNDIFERIA +SRLAHYNKRSTITSREIQ
Sbjct: 1 SYSIYVYKVLKQVHPDTGISSKAMGSMNSFVNDIFERIAGLASRLAHYNKRSTITSREIQ 60
Query: 336 TAVRLLLPGELAKHAVSEGTKAVTKYTSSK 365
TAVRLLLPGELAKHAVSEGTKAVTK+TSSK
Sbjct: 61 TAVRLLLPGELAKHAVSEGTKAVTKHTSSK 90
>pdb|1ID3|C Chain C, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|G Chain G, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 131
Score = 167 bits (424), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 77/90 (85%), Positives = 85/90 (94%)
Query: 58 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 117
L FPVGR+HRLLR+GNYA+R+G+GAPVYL AV+EYLAAE+LELAGNAARDNKKTRIIPRH
Sbjct: 24 LTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRH 83
Query: 118 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQ 147
LQLAIRND+ELNKLL VTIAQGGVLPNI
Sbjct: 84 LQLAIRNDDELNKLLGNVTIAQGGVLPNIH 113
>pdb|2XQL|A Chain A, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|C Chain C, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|E Chain E, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|G Chain G, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|I Chain I, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5)
Length = 91
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 77/83 (92%), Positives = 80/83 (96%)
Query: 58 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 117
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 9 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 68
Query: 118 LQLAIRNDEELNKLLSGVTIAQG 140
LQLAIRNDEELNKLL VTIAQG
Sbjct: 69 LQLAIRNDEELNKLLGKVTIAQG 91
>pdb|1ID3|D Chain D, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|H Chain H, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 130
Score = 158 bits (399), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 85/90 (94%)
Query: 275 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 334
E+Y+ YIYKVLKQ HPDTG+S K+MSI+NSFVNDIFERIA E+S+LA YNK+STI++REI
Sbjct: 38 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREI 97
Query: 335 QTAVRLLLPGELAKHAVSEGTKAVTKYTSS 364
QTAVRL+LPGELAKHAVSEGT+AVTKY+SS
Sbjct: 98 QTAVRLILPGELAKHAVSEGTRAVTKYSSS 127
>pdb|2JSS|A Chain A, Nmr Structure Of Chaperone Chz1 Complexed With Histone
H2a.Z-H2b
Length = 192
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 82/87 (94%)
Query: 275 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 334
E+Y+ YIYKVLKQ HPDTG+S K+MSI+NSFVNDIFERIA E+S+LA YNK+STI++REI
Sbjct: 3 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREI 62
Query: 335 QTAVRLLLPGELAKHAVSEGTKAVTKY 361
QTAVRL+LPGELAKHAVSEGT+AVTKY
Sbjct: 63 QTAVRLILPGELAKHAVSEGTRAVTKY 89
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Query: 58 LQFPVGRIHRLL-RKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 116
LQFPVGRI R L R RVG+ A +YL AV+EYL AEVLELAGNAA+D K RI PR
Sbjct: 104 LQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPR 163
Query: 117 HLQLAIRNDEELNKLLSGVTIAQGGVLPNI 146
HLQLAIR D+EL+ L+ TIA GGVLP+I
Sbjct: 164 HLQLAIRGDDELDSLIRA-TIASGGVLPHI 192
>pdb|1U35|C Chain C, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|G Chain G, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|2F8N|G Chain G, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 120
Score = 131 bits (329), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 73/88 (82%)
Query: 60 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQ 119
FPVGR+ R ++KG+ R+G GAPVY+AAV+EYL AE+LELA NAARDNKK R+ PRH+
Sbjct: 23 FPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHIL 82
Query: 120 LAIRNDEELNKLLSGVTIAQGGVLPNIQ 147
LA+ NDEELN+LL GVTIA GGVLPNI
Sbjct: 83 LAVANDEELNQLLKGVTIASGGVLPNIH 110
>pdb|1F66|C Chain C, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|G Chain G, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 128
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 69/91 (75%), Gaps = 2/91 (2%)
Query: 58 LQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 116
LQFPVGRIHR L+ + RVGA A VY AA++EYL AEVLELAGNA++D K RI PR
Sbjct: 26 LQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 85
Query: 117 HLQLAIRNDEELNKLLSGVTIAQGGVLPNIQ 147
HLQLAIR DEEL+ L+ TIA GGV+P+I
Sbjct: 86 HLQLAIRGDEELDSLIK-ATIAGGGVIPHIH 115
>pdb|1Q9C|A Chain A, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|B Chain B, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|C Chain C, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|D Chain D, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|E Chain E, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|F Chain F, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|G Chain G, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|H Chain H, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|I Chain I, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
Length = 191
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 58 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 117
L PV +IH LL++ ++ VY+ AV+EY++A++L+LAGN R+ + I +
Sbjct: 103 LSLPVEKIHPLLKEV-LGYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQD 161
Query: 118 LQLAIRNDEEL 128
+++A D+ L
Sbjct: 162 IKVAXCADKVL 172
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 58 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 117
L PV +IH LL K ++ VY+ AV+EY++A++L+L GN R+ + I +
Sbjct: 103 LSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQD 161
Query: 118 LQLAIRNDEELNKLL 132
+++A+ D+ L +
Sbjct: 162 IKVAMCADKVLMDMF 176
>pdb|4EDU|T Chain T, The Mbt Repeats Of Human Scml2 In A Complex With Histone
H2a Peptide
Length = 16
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 14/16 (87%), Positives = 15/16 (93%)
Query: 65 IHRLLRKGNYAERVGA 80
+HRLLR GNYAERVGA
Sbjct: 1 VHRLLRXGNYAERVGA 16
>pdb|2RP5|A Chain A, Solution Structure Of The Oligomerization Domain In Cep-1
pdb|2RP5|B Chain B, Solution Structure Of The Oligomerization Domain In Cep-1
Length = 136
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 307 NDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 340
NDIFERI +SS+L+ Y + + ++ IQ A++L
Sbjct: 102 NDIFERIGIDSSKLSKYYE-AFLSFYRIQEAMKL 134
>pdb|3IBX|A Chain A, Crystal Structure Of F47y Variant Of Tena (Hp1287) From
Helicobacter Pylori
pdb|3IBX|D Chain D, Crystal Structure Of F47y Variant Of Tena (Hp1287) From
Helicobacter Pylori
Length = 221
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 300 SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 359
++M F N I + + E S HY + IT +E+Q A L + ++EG K
Sbjct: 70 AVMREFSNAIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKSYTSYMLAEGFKGSI 129
Query: 360 K 360
K
Sbjct: 130 K 130
>pdb|2RD3|A Chain A, Crystal Structure Of Tena Homologue (Hp1287) From
Helicobacter Pylori
pdb|2RD3|D Chain D, Crystal Structure Of Tena Homologue (Hp1287) From
Helicobacter Pylori
Length = 223
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 300 SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 359
++M F N I + + E S HY + IT +E+Q A L + ++EG K
Sbjct: 72 AVMREFSNAIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKSYTSYMLAEGFKGSI 131
Query: 360 K 360
K
Sbjct: 132 K 132
>pdb|4AWL|C Chain C, The Nf-y Transcription Factor Is Structurally And
Functionally A Sequence Specific Histone
Length = 94
Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 34/74 (45%)
Query: 59 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 118
+ P+ RI ++++ + + A APV A + E+ A DNK+ + +
Sbjct: 16 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDI 75
Query: 119 QLAIRNDEELNKLL 132
+AI ++ + L+
Sbjct: 76 AMAITKFDQFDFLI 89
>pdb|1N1J|B Chain B, Crystal Structure Of The Nf-YbNF-Yc Histone Pair
Length = 97
Score = 28.9 bits (63), Expect = 4.4, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 34/74 (45%)
Query: 59 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 118
+ P+ RI ++++ + + A APV A + E+ A DNK+ + +
Sbjct: 19 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDI 78
Query: 119 QLAIRNDEELNKLL 132
+AI ++ + L+
Sbjct: 79 AMAITKFDQFDFLI 92
>pdb|4G91|C Chain C, Ccaat-Binding Complex From Aspergillus Nidulans
pdb|4G92|C Chain C, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
Length = 119
Score = 28.5 bits (62), Expect = 6.2, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 59 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK 110
Q P+ RI ++++ + + A AP+ A + E+ A A DNK+
Sbjct: 41 QLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKR 92
>pdb|1JFI|A Chain A, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex
Length = 98
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 59 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 118
+FP RI ++++ +V A PV ++ +E +L+ A + + HL
Sbjct: 11 RFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 70
Query: 119 QLAI 122
+ I
Sbjct: 71 KQCI 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,553,017
Number of Sequences: 62578
Number of extensions: 227055
Number of successful extensions: 922
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 826
Number of HSP's gapped (non-prelim): 96
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)