Query psy3828
Match_columns 365
No_of_seqs 308 out of 788
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 18:23:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nqb_D Histone H2B; nucleosome 100.0 3.2E-51 1.1E-55 350.1 8.3 103 263-365 21-123 (123)
2 1tzy_B Histone H2B; histone-fo 100.0 9.9E-51 3.4E-55 348.3 7.9 102 264-365 25-126 (126)
3 2nqb_C Histone H2A; nucleosome 100.0 3.2E-42 1.1E-46 295.6 7.3 115 37-151 1-115 (123)
4 2f8n_G Core histone macro-H2A. 100.0 4.2E-42 1.5E-46 293.8 7.1 114 36-151 1-114 (120)
5 1tzy_A Histone H2A-IV; histone 100.0 4.7E-42 1.6E-46 296.8 7.4 116 36-151 1-117 (129)
6 2f8n_K Histone H2A type 1; nuc 100.0 2.7E-41 9.4E-46 298.1 7.3 117 35-151 19-136 (149)
7 1id3_C Histone H2A.1; nucleoso 100.0 2.7E-40 9.4E-45 286.4 9.5 112 40-151 6-117 (131)
8 1f66_C Histone H2A.Z; nucleoso 100.0 7.8E-40 2.7E-44 282.6 7.3 108 43-151 11-119 (128)
9 2jss_A Chimera of histone H2B. 100.0 9.5E-36 3.2E-40 271.8 3.4 124 12-146 68-192 (192)
10 2jss_A Chimera of histone H2B. 100.0 5.4E-35 1.8E-39 266.8 8.0 92 273-364 1-92 (192)
11 3ksy_A SOS-1, SON of sevenless 99.9 4.9E-23 1.7E-27 225.6 3.9 98 49-148 94-191 (1049)
12 1jfi_A Transcription regulator 99.8 3.4E-20 1.2E-24 152.9 6.3 82 51-132 3-84 (98)
13 1n1j_B NF-YC; histone-like PAI 99.6 5.9E-16 2E-20 127.1 6.2 78 55-132 15-92 (97)
14 4g92_C HAPE; transcription fac 99.6 1.3E-15 4.4E-20 129.6 6.0 76 57-132 39-114 (119)
15 1tzy_D Histone H4-VI; histone- 99.5 2E-14 6.8E-19 119.3 6.2 87 36-125 1-94 (103)
16 2yfw_B Histone H4, H4; cell cy 99.5 2E-14 6.9E-19 119.4 5.5 88 36-126 1-95 (103)
17 2byk_A Chrac-16; nucleosome sl 99.5 1.9E-14 6.4E-19 125.9 4.1 85 48-132 8-93 (140)
18 3b0c_W CENP-W, centromere prot 99.5 4E-14 1.4E-18 111.4 5.5 65 279-343 8-72 (76)
19 1f1e_A Histone fold protein; a 99.3 1.6E-11 5.5E-16 108.9 12.0 147 59-344 4-150 (154)
20 1f1e_A Histone fold protein; a 98.9 1.2E-09 4.1E-14 96.9 4.6 72 53-125 76-147 (154)
21 1b67_A Protein (histone HMFA); 98.6 3.6E-08 1.2E-12 75.2 5.6 60 281-341 8-67 (68)
22 1b67_A Protein (histone HMFA); 98.4 1.8E-07 6.3E-12 71.3 5.0 65 59-124 2-66 (68)
23 1ku5_A HPHA, archaeal histon; 98.3 6.2E-07 2.1E-11 69.0 4.9 65 59-124 6-70 (70)
24 1id3_B Histone H4; nucleosome 98.1 4.8E-06 1.6E-10 69.0 6.3 77 46-125 17-93 (102)
25 1tzy_D Histone H4-VI; histone- 97.9 1.8E-05 6.2E-10 65.3 6.9 62 279-341 33-94 (103)
26 2yfw_B Histone H4, H4; cell cy 97.9 1.7E-05 5.9E-10 65.5 6.4 62 279-341 33-94 (103)
27 1n1j_A NF-YB; histone-like PAI 97.9 1.4E-05 4.9E-10 64.5 5.0 68 56-123 5-73 (93)
28 3b0c_W CENP-W, centromere prot 97.8 3.1E-05 1.1E-09 60.5 5.5 65 59-123 4-68 (76)
29 2byk_B Chrac-14; nucleosome sl 97.7 1.9E-05 6.5E-10 67.9 3.4 72 57-128 7-79 (128)
30 1id3_B Histone H4; nucleosome 97.5 0.00015 5.2E-09 60.0 6.5 62 279-341 32-93 (102)
31 1ku5_A HPHA, archaeal histon; 97.5 0.00014 4.9E-09 55.7 5.8 59 280-339 11-69 (70)
32 2hue_C Histone H4; mini beta s 97.4 0.00031 1.1E-08 56.0 6.1 71 52-125 5-75 (84)
33 1n1j_A NF-YB; histone-like PAI 97.2 0.00061 2.1E-08 54.8 6.7 60 280-339 13-73 (93)
34 1taf_B TFIID TBP associated fa 97.0 0.00081 2.8E-08 52.4 5.3 66 57-123 4-69 (70)
35 2hue_C Histone H4; mini beta s 97.0 0.00066 2.3E-08 54.0 4.9 62 279-341 14-75 (84)
36 3b0c_T CENP-T, centromere prot 97.0 0.00097 3.3E-08 55.9 5.9 61 279-340 11-71 (111)
37 1jfi_B DR1 protein, transcript 97.0 0.0015 5E-08 59.2 7.3 61 280-340 20-80 (179)
38 1id3_C Histone H2A.1; nucleoso 97.0 0.0013 4.5E-08 56.7 6.7 64 276-339 25-89 (131)
39 2f8n_K Histone H2A type 1; nuc 96.9 0.0011 3.9E-08 58.4 5.3 64 276-339 44-108 (149)
40 1f66_C Histone H2A.Z; nucleoso 96.8 0.0014 4.7E-08 56.4 5.4 65 275-339 26-92 (128)
41 2nqb_C Histone H2A; nucleosome 96.8 0.0021 7.1E-08 54.9 6.3 64 276-339 23-87 (123)
42 2f8n_G Core histone macro-H2A. 96.8 0.0022 7.4E-08 54.6 6.2 64 276-339 22-86 (120)
43 2byk_B Chrac-14; nucleosome sl 96.7 0.0032 1.1E-07 54.0 6.7 61 281-341 15-76 (128)
44 1tzy_A Histone H2A-IV; histone 96.7 0.0027 9.1E-08 54.7 6.2 64 276-339 25-89 (129)
45 1n1j_B NF-YC; histone-like PAI 96.6 0.0038 1.3E-07 50.8 6.4 58 281-339 25-83 (97)
46 4g92_C HAPE; transcription fac 96.5 0.0032 1.1E-07 53.1 5.8 58 281-339 47-105 (119)
47 1jfi_B DR1 protein, transcript 96.5 0.0021 7.3E-08 58.2 4.7 76 55-131 11-86 (179)
48 1h3o_B Transcription initiatio 96.4 0.0083 2.9E-07 47.4 6.7 59 281-339 11-69 (76)
49 3b0c_T CENP-T, centromere prot 96.3 0.0046 1.6E-07 51.7 5.4 71 57-128 5-75 (111)
50 1taf_B TFIID TBP associated fa 96.3 0.0087 3E-07 46.5 6.4 60 280-340 11-70 (70)
51 1jfi_A Transcription regulator 95.9 0.0068 2.3E-07 49.5 4.2 59 280-339 16-75 (98)
52 2hue_B Histone H3; mini beta s 95.8 0.018 6.2E-07 45.6 6.3 65 276-340 8-72 (77)
53 3v9r_A MHF1, uncharacterized p 95.7 0.014 4.7E-07 47.5 5.3 78 55-134 11-89 (90)
54 1taf_A TFIID TBP associated fa 95.7 0.035 1.2E-06 42.9 7.4 63 279-342 5-67 (68)
55 3v9r_A MHF1, uncharacterized p 95.7 0.017 6E-07 46.9 5.8 60 281-340 18-79 (90)
56 1tzy_B Histone H2B; histone-fo 95.7 0.0096 3.3E-07 51.2 4.4 71 57-128 35-107 (126)
57 2l5a_A Histone H3-like centrom 95.5 0.28 9.5E-06 46.1 13.9 207 58-341 10-226 (235)
58 3b0b_B CENP-S, centromere prot 95.4 0.012 4E-07 49.3 4.0 61 280-340 24-86 (107)
59 4dra_A Centromere protein S; D 95.4 0.018 6E-07 48.7 5.0 61 280-340 32-94 (113)
60 3nqj_A Histone H3-like centrom 95.3 0.036 1.2E-06 44.4 6.2 66 276-341 8-75 (82)
61 2nqb_D Histone H2B; nucleosome 95.3 0.015 5.1E-07 49.9 4.3 69 59-128 34-104 (123)
62 1taf_A TFIID TBP associated fa 95.2 0.031 1.1E-06 43.2 5.5 60 64-124 6-65 (68)
63 3vh5_A CENP-S; histone fold, c 94.9 0.029 9.9E-07 49.0 5.0 60 281-340 25-86 (140)
64 3b0b_B CENP-S, centromere prot 94.7 0.022 7.6E-07 47.6 3.6 78 55-133 18-95 (107)
65 4dra_A Centromere protein S; D 94.6 0.024 8.2E-07 47.9 3.8 79 54-133 25-103 (113)
66 2byk_A Chrac-16; nucleosome sl 94.6 0.06 2E-06 46.8 6.3 58 281-339 25-84 (140)
67 2yfv_A Histone H3-like centrom 94.5 0.058 2E-06 44.6 5.7 66 275-340 31-99 (100)
68 3ksy_A SOS-1, SON of sevenless 94.5 0.07 2.4E-06 58.9 8.1 75 274-358 20-94 (1049)
69 1tzy_C Histone H3; histone-fol 94.4 0.065 2.2E-06 46.5 6.1 64 277-340 68-131 (136)
70 2ly8_A Budding yeast chaperone 94.4 0.056 1.9E-06 46.1 5.4 48 293-340 64-111 (121)
71 3nqu_A Histone H3-like centrom 93.8 0.094 3.2E-06 45.8 5.9 61 281-341 67-133 (140)
72 3r45_A Histone H3-like centrom 93.7 0.084 2.9E-06 46.9 5.4 60 281-340 83-148 (156)
73 3vh5_A CENP-S; histone fold, c 93.4 0.053 1.8E-06 47.4 3.5 79 55-134 18-96 (140)
74 1bh9_B TAFII28; histone fold, 92.6 0.11 3.6E-06 42.1 4.1 64 59-123 16-80 (89)
75 2hue_B Histone H3; mini beta s 92.4 0.14 4.6E-06 40.5 4.4 65 59-123 3-71 (77)
76 3nqj_A Histone H3-like centrom 92.2 0.13 4.3E-06 41.2 4.0 64 60-123 4-73 (82)
77 3nqu_A Histone H3-like centrom 91.1 0.18 6E-06 44.1 4.0 68 56-123 58-131 (140)
78 3r45_A Histone H3-like centrom 91.1 0.14 4.7E-06 45.5 3.4 69 56-124 74-148 (156)
79 3b0b_C CENP-X, centromere prot 90.2 0.39 1.3E-05 38.2 5.0 64 57-120 6-71 (81)
80 2yfv_A Histone H3-like centrom 89.9 0.24 8.1E-06 40.9 3.6 68 56-123 24-98 (100)
81 1tzy_C Histone H3; histone-fol 89.9 0.3 1E-05 42.4 4.5 68 56-123 59-130 (136)
82 2ly8_A Budding yeast chaperone 89.6 0.48 1.6E-05 40.4 5.4 49 75-123 62-110 (121)
83 4dra_E Centromere protein X; D 88.9 0.63 2.2E-05 37.3 5.3 66 56-121 9-76 (84)
84 2l5a_A Histone H3-like centrom 88.2 0.4 1.4E-05 45.0 4.3 59 65-124 167-225 (235)
85 1k6k_A ATP-dependent CLP prote 74.8 2.2 7.7E-05 34.9 3.5 41 94-134 6-46 (143)
86 1khy_A CLPB protein; alpha hel 61.1 4.5 0.00015 33.2 2.5 33 94-126 10-42 (148)
87 1bh9_B TAFII28; histone fold, 59.6 26 0.00087 28.0 6.6 61 281-342 22-83 (89)
88 2y1q_A CLPC N-domain, negative 58.4 3.7 0.00013 33.8 1.6 40 94-133 10-51 (150)
89 3fes_A ATP-dependent CLP endop 57.7 3.4 0.00012 34.4 1.2 40 94-133 12-53 (145)
90 3fh2_A Probable ATP-dependent 57.6 5.5 0.00019 33.1 2.5 40 94-133 11-52 (146)
91 1h3o_B Transcription initiatio 56.8 15 0.00052 28.7 4.8 66 59-124 5-70 (76)
92 3fes_A ATP-dependent CLP endop 50.5 6.1 0.00021 32.8 1.7 40 94-133 86-127 (145)
93 3zri_A CLPB protein, CLPV; cha 50.3 7.6 0.00026 33.9 2.3 48 86-133 18-70 (171)
94 3fh2_A Probable ATP-dependent 50.0 8.4 0.00029 31.9 2.4 39 95-133 87-127 (146)
95 4dra_E Centromere protein X; D 42.6 64 0.0022 25.6 6.3 55 279-337 16-76 (84)
96 3b0b_C CENP-X, centromere prot 42.3 54 0.0018 25.8 5.9 54 280-337 13-72 (81)
97 1khy_A CLPB protein; alpha hel 41.8 20 0.00069 29.1 3.5 40 94-133 87-127 (148)
98 1k6k_A ATP-dependent CLP prote 41.5 14 0.00049 29.9 2.5 40 94-133 84-125 (143)
99 3aji_B S6C, proteasome (prosom 39.4 39 0.0013 25.2 4.5 36 309-344 39-74 (83)
100 1wwi_A Hypothetical protein TT 38.9 43 0.0015 29.4 5.2 61 59-120 2-62 (148)
101 3zri_A CLPB protein, CLPV; cha 37.4 18 0.00062 31.5 2.7 32 95-126 104-136 (171)
102 3vlf_B 26S protease regulatory 33.2 38 0.0013 26.0 3.6 38 310-347 40-77 (88)
103 2dzn_B 26S protease regulatory 32.8 38 0.0013 25.4 3.5 36 310-345 37-72 (82)
104 1r6b_X CLPA protein; AAA+, N-t 32.2 30 0.001 36.0 3.7 40 94-133 6-45 (758)
105 3f9v_A Minichromosome maintena 31.3 34 0.0011 35.3 3.9 65 275-341 505-587 (595)
106 2y1q_A CLPC N-domain, negative 29.3 35 0.0012 27.8 3.0 33 94-126 84-116 (150)
107 2krk_A 26S protease regulatory 28.3 37 0.0013 26.1 2.8 36 309-344 49-84 (86)
108 3kw6_A 26S protease regulatory 26.2 49 0.0017 24.4 3.1 36 309-344 41-76 (78)
109 1g8p_A Magnesium-chelatase 38 24.1 1.1E+02 0.0037 27.7 5.6 57 290-346 264-327 (350)
110 1r4v_A Hypothetical protein AQ 21.5 47 0.0016 29.7 2.4 62 59-121 26-87 (171)
111 3iz6_S 40S ribosomal protein S 20.1 1E+02 0.0034 26.9 4.2 39 276-314 98-146 (146)
No 1
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=100.00 E-value=3.2e-51 Score=350.09 Aligned_cols=103 Identities=93% Similarity=1.236 Sum_probs=93.8
Q ss_pred ccccccccccCccchhhhhhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHHhC
Q psy3828 263 AKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLL 342 (365)
Q Consensus 263 ~~~~~k~~~kr~esy~~YIykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrllL 342 (365)
+++++|++++|+|+|++||||||||||||+|||++||+||||||||||||||.||++|++||+|+|||+||||+||||+|
T Consensus 21 ~~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlL 100 (123)
T 2nqb_D 21 TKTDKKKKRKRKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLL 100 (123)
T ss_dssp --------CCCCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHS
T ss_pred CCCCCCCCccccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhC
Confidence 34456677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHhhHHhhhhhhhhccccCC
Q psy3828 343 PGELAKHAVSEGTKAVTKYTSSK 365 (365)
Q Consensus 343 PgeLakhAvseGtkAV~ky~~~k 365 (365)
||||+||||+||||||++|++++
T Consensus 101 pGELaKhAvseGtkAV~ky~ss~ 123 (123)
T 2nqb_D 101 PGELAKHAVSEGTKAVTKYTSSK 123 (123)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHHhcccCCC
Confidence 99999999999999999999986
No 2
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=100.00 E-value=9.9e-51 Score=348.32 Aligned_cols=102 Identities=90% Similarity=1.222 Sum_probs=91.5
Q ss_pred cccccccccCccchhhhhhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHHhCc
Q psy3828 264 KSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 343 (365)
Q Consensus 264 ~~~~k~~~kr~esy~~YIykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrllLP 343 (365)
++++||+++|+|+|++||||||||||||+|||++||+||||||||||||||.||++|++||+|+|||+||||+|||||||
T Consensus 25 ~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLp 104 (126)
T 1tzy_B 25 KGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLP 104 (126)
T ss_dssp ---------CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSC
T ss_pred CCCCCccccccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCc
Confidence 34466778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHhhhhhhhhccccCC
Q psy3828 344 GELAKHAVSEGTKAVTKYTSSK 365 (365)
Q Consensus 344 geLakhAvseGtkAV~ky~~~k 365 (365)
|||+||||+||||||++|++++
T Consensus 105 GELaKhAvseGtkAV~ky~ssk 126 (126)
T 1tzy_B 105 GELAKHAVSEGTKAVTKYTSSK 126 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhcccCCC
Confidence 9999999999999999999985
No 3
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=100.00 E-value=3.2e-42 Score=295.63 Aligned_cols=115 Identities=93% Similarity=1.307 Sum_probs=101.9
Q ss_pred CCCCCCCCCCCCCCCcccccccccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccch
Q psy3828 37 SGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 116 (365)
Q Consensus 37 Sg~gkggk~~~k~~SrSsRAgLqFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~ 116 (365)
||+|||||.+++++|+|+||||||||+||+|||++++|++||+++|||||+||||||++||||+|+|+|+++++++|+|+
T Consensus 1 ~~~~~~~~~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~ 80 (123)
T 2nqb_C 1 SGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 80 (123)
T ss_dssp ------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH
T ss_pred CCCCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHH
Confidence 57888888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCcHHHHhhhcCCeecCCcccCCcccccc
Q psy3828 117 HLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGAA 151 (365)
Q Consensus 117 hI~lAI~nDeEL~~Lf~~vtIa~GGV~P~i~~gl~ 151 (365)
||++||+||+|||+||+++||++|||+||||+.+.
T Consensus 81 hi~lAI~nDeEL~~Ll~~vtia~ggvlp~i~~~l~ 115 (123)
T 2nqb_C 81 HLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLL 115 (123)
T ss_dssp HHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGS
T ss_pred HHHHHHhccHHHHHHhcCceeCCCCcCCCccHHHc
Confidence 99999999999999999999999999999999986
No 4
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=100.00 E-value=4.2e-42 Score=293.77 Aligned_cols=114 Identities=63% Similarity=0.991 Sum_probs=103.3
Q ss_pred cCCCCCCCCCCCCCCCcccccccccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccc
Q psy3828 36 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIP 115 (365)
Q Consensus 36 mSg~gkggk~~~k~~SrSsRAgLqFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP 115 (365)
|||+| ||++++++|+|+||||||||+||+|||++++|++||+++|||||+||||||++||||+|+|+|+++++++|+|
T Consensus 1 m~~~~--~~~~~~~~srs~ragLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp 78 (120)
T 2f8n_G 1 MSSRG--GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTP 78 (120)
T ss_dssp -----------CCCCCHHHHHTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred CCCCC--CCCCcCCcCcccccCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcH
Confidence 78876 6677788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCcHHHHhhhcCCeecCCcccCCcccccc
Q psy3828 116 RHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGAA 151 (365)
Q Consensus 116 ~hI~lAI~nDeEL~~Lf~~vtIa~GGV~P~i~~gl~ 151 (365)
+||++||+||+|||+||+++||++|||+||||+.+.
T Consensus 79 ~hi~lAI~nDeEL~~Ll~~vtia~ggv~p~i~~~l~ 114 (120)
T 2f8n_G 79 RHILLAVANDEELNQLLKGVTIASGGVLPNIHPELL 114 (120)
T ss_dssp HHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGS
T ss_pred HHHHHHHhcCHHHHHHhCCceECCCCcCCCcCHHHc
Confidence 999999999999999999999999999999999985
No 5
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=100.00 E-value=4.7e-42 Score=296.77 Aligned_cols=116 Identities=90% Similarity=1.282 Sum_probs=102.7
Q ss_pred cCCCCC-CCCCCCCCCCcccccccccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCcccc
Q psy3828 36 MSGRGK-GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRII 114 (365)
Q Consensus 36 mSg~gk-ggk~~~k~~SrSsRAgLqFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrIt 114 (365)
|||+|+ |||.+++.+|+|+||||||||+||+|||++++|++||+++|||||+||||||++||||+|+|+|+++++++|+
T Consensus 1 m~~~~~~~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krIt 80 (129)
T 1tzy_A 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 80 (129)
T ss_dssp -------------CCCCHHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCCCCCCCCCCCCCCCccccCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEc
Confidence 889887 7787888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhcCcHHHHhhhcCCeecCCcccCCcccccc
Q psy3828 115 PRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGAA 151 (365)
Q Consensus 115 P~hI~lAI~nDeEL~~Lf~~vtIa~GGV~P~i~~gl~ 151 (365)
|+||++||+||+|||+||+++||++|||+||||+.+.
T Consensus 81 p~hi~lAI~nDeEL~~L~~~vtIa~ggvlP~i~~~l~ 117 (129)
T 1tzy_A 81 PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLL 117 (129)
T ss_dssp HHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGS
T ss_pred HHHHHHHHhccHHHHHHhCCCeecCCCcCCCCCHHHc
Confidence 9999999999999999999999999999999999986
No 6
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=100.00 E-value=2.7e-41 Score=298.11 Aligned_cols=117 Identities=88% Similarity=1.253 Sum_probs=101.8
Q ss_pred ccCCCCCC-CCCCCCCCCcccccccccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccc
Q psy3828 35 TMSGRGKG-GKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRI 113 (365)
Q Consensus 35 ~mSg~gkg-gk~~~k~~SrSsRAgLqFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrI 113 (365)
+|||+|++ ||.+++.+|+|+||||||||+||+|||++++|++||+++|||||+||||||++||||+|+|+|+++++++|
T Consensus 19 ~~~~~~~~~~~~~~k~~srS~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrI 98 (149)
T 2f8n_K 19 SMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 98 (149)
T ss_dssp ---------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred ccccCCCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 69999885 77788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhcCcHHHHhhhcCCeecCCcccCCcccccc
Q psy3828 114 IPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGAA 151 (365)
Q Consensus 114 tP~hI~lAI~nDeEL~~Lf~~vtIa~GGV~P~i~~gl~ 151 (365)
+|+||++||+||+|||+||+++||++|||+|+||+.+.
T Consensus 99 tprhI~lAI~nDeEL~~Ll~~vtIa~gGVlP~i~~~l~ 136 (149)
T 2f8n_K 99 IPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLL 136 (149)
T ss_dssp CHHHHHHHHHHSHHHHHHTTTEEETTCCCCCCCCGGGS
T ss_pred cHHHHHHHHhccHHHHHHhcCceEcCCCCCCCccHHHc
Confidence 99999999999999999999999999999999999986
No 7
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=100.00 E-value=2.7e-40 Score=286.40 Aligned_cols=112 Identities=77% Similarity=1.189 Sum_probs=100.9
Q ss_pred CCCCCCCCCCCCcccccccccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhh
Q psy3828 40 GKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQ 119 (365)
Q Consensus 40 gkggk~~~k~~SrSsRAgLqFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~ 119 (365)
|+++|.+++.+|+|+||||||||+||+|||++++|++||+++|||||+||||||++||||+|+|+|+++++++|+|+||+
T Consensus 6 ~~~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~ 85 (131)
T 1id3_C 6 GKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQ 85 (131)
T ss_dssp ----------CCTTGGGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred CCCCCCCCCCCCccccCCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHH
Confidence 34566677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCcHHHHhhhcCCeecCCcccCCcccccc
Q psy3828 120 LAIRNDEELNKLLSGVTIAQGGVLPNIQAGAA 151 (365)
Q Consensus 120 lAI~nDeEL~~Lf~~vtIa~GGV~P~i~~gl~ 151 (365)
+||+||+|||+||+++||++|||+||||+.+.
T Consensus 86 lAI~nDeEL~~Ll~~vtIa~ggvlP~i~~~l~ 117 (131)
T 1id3_C 86 LAIRNDDELNKLLGNVTIAQGGVLPNIHQNLL 117 (131)
T ss_dssp HHHHTCHHHHHHTTTEEETTCCCCCCCCGGGS
T ss_pred HHHhccHHHHHHhcCceecCCccCCCccHHHc
Confidence 99999999999999999999999999999986
No 8
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=100.00 E-value=7.8e-40 Score=282.57 Aligned_cols=108 Identities=64% Similarity=0.942 Sum_probs=99.1
Q ss_pred CCCCCCCCCcccccccccchhhhhhhhhcCCcc-cccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhh
Q psy3828 43 GKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA 121 (365)
Q Consensus 43 gk~~~k~~SrSsRAgLqFPVsRI~RlLke~~ya-~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lA 121 (365)
++.+++.+|+|+||||||||+||+|||++++|+ +||+++|||||+||||||++||||+|+|+|+++++++|+|+||++|
T Consensus 11 ~~~~~~~~srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lA 90 (128)
T 1f66_C 11 GKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLA 90 (128)
T ss_dssp ------CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHH
T ss_pred CCcCCCCcCccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHH
Confidence 445667899999999999999999999999987 5999999999999999999999999999999999999999999999
Q ss_pred hcCcHHHHhhhcCCeecCCcccCCcccccc
Q psy3828 122 IRNDEELNKLLSGVTIAQGGVLPNIQAGAA 151 (365)
Q Consensus 122 I~nDeEL~~Lf~~vtIa~GGV~P~i~~gl~ 151 (365)
|+||+|||+||+ +||++|||+||||+.+.
T Consensus 91 I~nDeEL~~Ll~-~tia~ggv~P~i~~~l~ 119 (128)
T 1f66_C 91 IRGDEELDSLIK-ATIAGGGVIPHIHKSLI 119 (128)
T ss_dssp HHHSHHHHHHCC-SEETTCCCCCCCCGGGC
T ss_pred HhccHHHhhhhc-ceecCCccCCCCCHHhc
Confidence 999999999996 59999999999999986
No 9
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=100.00 E-value=9.5e-36 Score=271.79 Aligned_cols=124 Identities=52% Similarity=0.753 Sum_probs=116.0
Q ss_pred cCCCcccccccccCCCCCcccccccCCCCCCCCCCCCCCCcccccccccchhhhhhhhhcCCcc-cccCCChhHHHHHHH
Q psy3828 12 NDSSITQSRSFSIPGAVPIPQIYTMSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVM 90 (365)
Q Consensus 12 ~~~s~~~a~~c~~~~a~~a~~~~~mSg~gkggk~~~k~~SrSsRAgLqFPVsRI~RlLke~~ya-~RVs~~ApVYLaAVL 90 (365)
-+.+|.|+..|. ..+.+|.+.|++++ +.+++|+|+||||||+||+|||++++++ .||+++|||||+|||
T Consensus 68 l~lpgeLak~Av-~eG~kAv~k~~~sk---------~~~s~s~ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavL 137 (192)
T 2jss_A 68 LILPGELAKHAV-SEGTRAVTKYSSST---------QAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVL 137 (192)
T ss_dssp HHSCSHHHHHHH-HHHHHHHHHHHHHC---------SSSCHHHHSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHH
T ss_pred HhcCHHHHHHHH-HHHHHHHHhhcccc---------ccccccccCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHH
Confidence 356799999998 57999999999975 2469999999999999999999999887 799999999999999
Q ss_pred HHHHHHHHHHHhHHHhhcCCccccchhhhhhhcCcHHHHhhhcCCeecCCcccCCc
Q psy3828 91 EYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNI 146 (365)
Q Consensus 91 EYLtaEILELAgn~A~~~kkkrItP~hI~lAI~nDeEL~~Lf~~vtIa~GGV~P~i 146 (365)
|||++||||+|+|+|+++++++|+|+||++||+||+|||+||+ +||++|||+|||
T Consensus 138 Eyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~eL~~L~~-~ti~~ggv~p~i 192 (192)
T 2jss_A 138 EYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIR-ATIASGGVLPHI 192 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSHHHHHHHC-SCCTTTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccHHHHHHHh-hhhcCCCcCCCC
Confidence 9999999999999999999999999999999999999999996 699999999997
No 10
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=100.00 E-value=5.4e-35 Score=266.82 Aligned_cols=92 Identities=80% Similarity=1.168 Sum_probs=89.5
Q ss_pred CccchhhhhhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHHhCcHHHHhhHHh
Q psy3828 273 RKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVS 352 (365)
Q Consensus 273 r~esy~~YIykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrllLPgeLakhAvs 352 (365)
|+|+|++||||||||||||++||++||++||+|++|+|||||.||++|++||+|+|||+||||+||||+|||||+|||++
T Consensus 1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~ 80 (192)
T 2jss_A 1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVS 80 (192)
T ss_dssp CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHH
T ss_pred CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccC
Q psy3828 353 EGTKAVTKYTSS 364 (365)
Q Consensus 353 eGtkAV~ky~~~ 364 (365)
||+|||++|+++
T Consensus 81 eG~kAv~k~~~s 92 (192)
T 2jss_A 81 EGTRAVTKYSSS 92 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhccc
Confidence 999999999653
No 11
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.86 E-value=4.9e-23 Score=225.57 Aligned_cols=98 Identities=28% Similarity=0.478 Sum_probs=82.2
Q ss_pred CCCcccccccccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhcCcHHH
Q psy3828 49 SKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEEL 128 (365)
Q Consensus 49 ~~SrSsRAgLqFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~nDeEL 128 (365)
..++|+|||||||||||||+| +|+|++||+++||||||||||||++||||||||+|+++++.+|+|+||++||+||+||
T Consensus 94 ~~~~~~~~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~eL 172 (1049)
T 3ksy_A 94 IEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVL 172 (1049)
T ss_dssp HTTCCCSSSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCSSH
T ss_pred hhcccccCCccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCHHH
Confidence 469999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCeecCCcccCCccc
Q psy3828 129 NKLLSGVTIAQGGVLPNIQA 148 (365)
Q Consensus 129 ~~Lf~~vtIa~GGV~P~i~~ 148 (365)
..||++. ...+|++|....
T Consensus 173 ~~l~~~d-ee~~~~lp~~~~ 191 (1049)
T 3ksy_A 173 MDMFHQD-VEDINILSLTDE 191 (1049)
T ss_dssp HHHCC---------------
T ss_pred HHHHhhc-cccccCCCCccc
Confidence 9999765 456677786543
No 12
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.80 E-value=3.4e-20 Score=152.92 Aligned_cols=82 Identities=17% Similarity=0.346 Sum_probs=62.6
Q ss_pred CcccccccccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhcCcHHHHh
Q psy3828 51 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNK 130 (365)
Q Consensus 51 SrSsRAgLqFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~nDeEL~~ 130 (365)
+++.+++++|||+||+|+||.+.+..||++.|++|+++++|||+.||+++|++.|+++++++|+|+||..||++|++|++
T Consensus 3 ~~~kk~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~F 82 (98)
T 1jfi_A 3 SKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAA 82 (98)
T ss_dssp -------CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-------
T ss_pred CcccccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh
Q psy3828 131 LL 132 (365)
Q Consensus 131 Lf 132 (365)
|+
T Consensus 83 L~ 84 (98)
T 1jfi_A 83 NK 84 (98)
T ss_dssp --
T ss_pred HH
Confidence 97
No 13
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.60 E-value=5.9e-16 Score=127.15 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=71.8
Q ss_pred ccccccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhcCcHHHHhhh
Q psy3828 55 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 132 (365)
Q Consensus 55 RAgLqFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~nDeEL~~Lf 132 (365)
-.+++||++||+|+||.+.+..||++.|++|+++++|||+.+|++.|++.|+.+++++|+|+||..||++|++|++|.
T Consensus 15 ~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~ 92 (97)
T 1n1j_B 15 FRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 92 (97)
T ss_dssp -----CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred cCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHH
Confidence 347899999999999999999999999999999999999999999999999999999999999999999999999996
No 14
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.58 E-value=1.3e-15 Score=129.62 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=73.0
Q ss_pred ccccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhcCcHHHHhhh
Q psy3828 57 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 132 (365)
Q Consensus 57 gLqFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~nDeEL~~Lf 132 (365)
-.+||++||+|+||.+.+..+|+..|++|+++++|||+.+|++.|++.|+++++++|+|+||..||++|++|++|.
T Consensus 39 ~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~ 114 (119)
T 4g92_C 39 IHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLI 114 (119)
T ss_dssp CCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred cCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHHH
Confidence 3479999999999999999999999999999999999999999999999999999999999999999999999874
No 15
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.50 E-value=2e-14 Score=119.33 Aligned_cols=87 Identities=25% Similarity=0.386 Sum_probs=70.1
Q ss_pred cCCCCCCCCC-------CCCCCCcccccccccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhc
Q psy3828 36 MSGRGKGGKA-------KAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 108 (365)
Q Consensus 36 mSg~gkggk~-------~~k~~SrSsRAgLqFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~ 108 (365)
|||+|||||. +.++.++++.+| ||+..|+|+++.+.+ .||+..+..+|+.+|||++.||++.|.+.|+..
T Consensus 1 m~g~gk~~kg~~~~~~kr~~k~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha 77 (103)
T 1tzy_D 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHA 77 (103)
T ss_dssp --------------------CCCCCGGGG--SCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCccccccchhhhccc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7888775553 334568999999 999999999999877 899999999999999999999999999999999
Q ss_pred CCccccchhhhhhhcCc
Q psy3828 109 KKTRIIPRHLQLAIRND 125 (365)
Q Consensus 109 kkkrItP~hI~lAI~nD 125 (365)
+++.|+|+||.+|+++.
T Consensus 78 kRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 78 KRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp TCSEECHHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHc
Confidence 99999999999999865
No 16
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.49 E-value=2e-14 Score=119.38 Aligned_cols=88 Identities=25% Similarity=0.378 Sum_probs=63.1
Q ss_pred cCCCCCCCCC-------CCCCCCcccccccccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhc
Q psy3828 36 MSGRGKGGKA-------KAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 108 (365)
Q Consensus 36 mSg~gkggk~-------~~k~~SrSsRAgLqFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~ 108 (365)
|||+|||||. +.+++++++.+| ||+..|+|+++.+.+ .||+..+..+|+.+|||++.||++.|.+.|+..
T Consensus 1 m~~~gk~gkg~~~~~~kr~~~~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha 77 (103)
T 2yfw_B 1 MSGRGKGGKGLGKGGAKRHRKILRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHA 77 (103)
T ss_dssp -------------------------------CCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCccchhhhhhhhhcc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7888876664 334556899999 999999999999877 899999999999999999999999999999999
Q ss_pred CCccccchhhhhhhcCcH
Q psy3828 109 KKTRIIPRHLQLAIRNDE 126 (365)
Q Consensus 109 kkkrItP~hI~lAI~nDe 126 (365)
+++.|+|+||.+|+++..
T Consensus 78 kRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 78 KRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp TCSEECHHHHHHHHHHHC
T ss_pred CCCcCcHHHHHHHHHHcC
Confidence 999999999999999654
No 17
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.47 E-value=1.9e-14 Score=125.87 Aligned_cols=85 Identities=13% Similarity=0.195 Sum_probs=62.5
Q ss_pred CCCCcccccccccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHH-hhcCCccccchhhhhhhcCcH
Q psy3828 48 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAA-RDNKKTRIIPRHLQLAIRNDE 126 (365)
Q Consensus 48 k~~SrSsRAgLqFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A-~~~kkkrItP~hI~lAI~nDe 126 (365)
+..+++.+.+++||++||+|+||.+....+|+..|+++++.++|||+.+|++.|++.| ...++++|+++||..||.+++
T Consensus 8 k~~s~~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e 87 (140)
T 2byk_A 8 PPVERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNK 87 (140)
T ss_dssp ---------------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCS
T ss_pred CCCCCCcccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCc
Confidence 3478888999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHhhh
Q psy3828 127 ELNKLL 132 (365)
Q Consensus 127 EL~~Lf 132 (365)
+|.+|.
T Consensus 88 ~~dFL~ 93 (140)
T 2byk_A 88 NLEFLL 93 (140)
T ss_dssp TTGGGT
T ss_pred hhhhHh
Confidence 999996
No 18
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.46 E-value=4e-14 Score=111.42 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=62.7
Q ss_pred hhhhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHHhCc
Q psy3828 279 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 343 (365)
Q Consensus 279 ~YIykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrllLP 343 (365)
.+|+|++||+||+..||.+|+.+|+.++.+++++|+.||..++++++|+||+++||+.|++.+|-
T Consensus 8 A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~ 72 (76)
T 3b0c_W 8 GTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVILK 72 (76)
T ss_dssp HHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999998863
No 19
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.30 E-value=1.6e-11 Score=108.92 Aligned_cols=147 Identities=19% Similarity=0.261 Sum_probs=123.0
Q ss_pred ccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhcCcHHHHhhhcCCeec
Q psy3828 59 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIA 138 (365)
Q Consensus 59 qFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~nDeEL~~Lf~~vtIa 138 (365)
.+|..-|.|+||++--..|||..|...|+.++|.+..+|...|.+.|...+++.|+++||..|+ ..
T Consensus 4 ~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~------~~-------- 69 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALA------DV-------- 69 (154)
T ss_dssp CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH------HH--------
T ss_pred cCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH------Hh--------
Confidence 4788889999999845599999999999999999999999999999999999999999999887 11
Q ss_pred CCcccCCccccccccccccccccCCCCCccceeccCCCcCcchhhhhhcccccccccCCCCccccCCccccCCCCCcccc
Q psy3828 139 QGGVLPNIQAGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATGLLVDEPGDTLDSTSTRQTTDGGLGDSL 218 (365)
Q Consensus 139 ~GGV~P~i~~gl~l~lekv~~vhgg~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l 218 (365)
|++++-+ -++++
T Consensus 70 --------------------------------lg~~~v~----d~~~l-------------------------------- 81 (154)
T 1f1e_A 70 --------------------------------LMVEGVE----DYDGE-------------------------------- 81 (154)
T ss_dssp --------------------------------HTCTTST----TCCSC--------------------------------
T ss_pred --------------------------------cccccCC----ccccc--------------------------------
Confidence 1111111 11110
Q ss_pred ccccccccccCCcccccccccccccCCCCChhhHHhhcccccccccccccccccCccchhhhhhhhhhhcCCCCCcchhH
Q psy3828 219 DVVTEYFPVPLGASFSESLSSLTTAAGKSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKA 298 (365)
Q Consensus 219 ~~~~~~~~v~~~~~~~~~~~s~~t~~~~~~~k~~~~~~~~~~~~~~~~~k~~~kr~esy~~YIykVLKQVhpd~gISska 298 (365)
+||+ .=|.|++|+. ....||+.|
T Consensus 82 -----~lP~---------------------------------------------------a~V~Ri~k~~-g~~RVS~~A 104 (154)
T 1f1e_A 82 -----LFGR---------------------------------------------------ATVRRILKRA-GIERASSDA 104 (154)
T ss_dssp -----CCCH---------------------------------------------------HHHHHHHHHT-TCCEECHHH
T ss_pred -----cCCc---------------------------------------------------cHHHHHHHHc-CCccchHHH
Confidence 0111 1188888888 678999999
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHHhCcH
Q psy3828 299 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 344 (365)
Q Consensus 299 m~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrllLPg 344 (365)
...|..++.++.+.|+.+|..++++.+|+||+.+||+.|++..||.
T Consensus 105 ~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~~ 150 (154)
T 1f1e_A 105 VDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMPK 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999999999993
No 20
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.87 E-value=1.2e-09 Score=96.90 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=68.5
Q ss_pred ccccccccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhcCc
Q psy3828 53 SSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 125 (365)
Q Consensus 53 SsRAgLqFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~nD 125 (365)
-.+.+|.||++.|.|+|+++ ...|||..|.++|..+|||++.+|.+.|.+.|+..+++.|+|+||.+|+.++
T Consensus 76 ~d~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 76 EDYDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp TTCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CccccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 34789999999999999998 8899999999999999999999999999999999999999999999999875
No 21
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.63 E-value=3.6e-08 Score=75.25 Aligned_cols=60 Identities=27% Similarity=0.384 Sum_probs=57.8
Q ss_pred hhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHHh
Q psy3828 281 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 341 (365)
Q Consensus 281 IykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrll 341 (365)
|.|++|++ ++..||+.|+..|...+.++++.|++||...+.+++|+||+.+|||.|++.|
T Consensus 8 v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 8 IGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp HHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred HHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 78999999 8899999999999999999999999999999999999999999999999865
No 22
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.44 E-value=1.8e-07 Score=71.32 Aligned_cols=65 Identities=28% Similarity=0.413 Sum_probs=61.5
Q ss_pred ccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhcC
Q psy3828 59 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 124 (365)
Q Consensus 59 qFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~n 124 (365)
.||.++|.|+|++. ...||+..|...|.-++|+++.+|.+.|...|...+++.|+|+||++|++.
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 48999999999998 778999999999999999999999999999999999999999999999863
No 23
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.30 E-value=6.2e-07 Score=68.97 Aligned_cols=65 Identities=32% Similarity=0.446 Sum_probs=61.6
Q ss_pred ccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhcC
Q psy3828 59 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 124 (365)
Q Consensus 59 qFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~n 124 (365)
.||.+.|+|+++++ -..|++..+...|..++|+++.+|++-|...|...|++.|+++||++|+++
T Consensus 6 ~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 68999999999996 578999999999999999999999999999999999999999999999875
No 24
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.08 E-value=4.8e-06 Score=69.01 Aligned_cols=77 Identities=17% Similarity=0.254 Sum_probs=63.5
Q ss_pred CCCCCCcccccccccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhcCc
Q psy3828 46 KAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 125 (365)
Q Consensus 46 ~~k~~SrSsRAgLqFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~nD 125 (365)
+-+++.+.+..+ +|..-|.|+++.+. ..||+..+..-|.-+|||++.+|++-|...++..+++.|+++||.+|+...
T Consensus 17 r~~k~~r~~i~~--ip~~~I~Rlar~~G-v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 17 RHRKILRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp -------CCGGG--SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred hHHHHHHhccCC--CCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 334456666666 78888999999964 589999999999999999999999999999999999999999999998843
No 25
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=97.92 E-value=1.8e-05 Score=65.33 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=57.7
Q ss_pred hhhhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHHh
Q psy3828 279 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 341 (365)
Q Consensus 279 ~YIykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrll 341 (365)
-.|.|+++..-. ..||..+..-|...+.+.++.|+.+|..++++++|+|||.+||+.|++-+
T Consensus 33 ~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 33 PAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 458899999876 68999999999999999999999999999999999999999999999854
No 26
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=97.90 E-value=1.7e-05 Score=65.54 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=57.8
Q ss_pred hhhhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHHh
Q psy3828 279 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 341 (365)
Q Consensus 279 ~YIykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrll 341 (365)
-.|.|+++..-. ..||..+..-|..++.+.++.|+.+|..++++++|+|||.+||+.|++-+
T Consensus 33 ~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 33 PAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 458899999876 68999999999999999999999999999999999999999999999965
No 27
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.86 E-value=1.4e-05 Score=64.50 Aligned_cols=68 Identities=10% Similarity=0.257 Sum_probs=62.5
Q ss_pred cccccchhhhhhhhhcC-CcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhc
Q psy3828 56 AGLQFPVGRIHRLLRKG-NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 123 (365)
Q Consensus 56 AgLqFPVsRI~RlLke~-~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~ 123 (365)
..+.||.++|.|+||+. ....||+..|...|+-+.|.++.+|.+.|...|...+++.|+++||..|+.
T Consensus 5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 36789999999999997 446899999999999999999999999999999999999999999999997
No 28
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=97.77 E-value=3.1e-05 Score=60.53 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=60.1
Q ss_pred ccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhc
Q psy3828 59 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 123 (365)
Q Consensus 59 qFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~ 123 (365)
.+|.+.|.|+|++..-..+|+..|...+.-+.|-++.+|-..|...|+..+++.|+++||..|+.
T Consensus 4 ~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~ 68 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAK 68 (76)
T ss_dssp CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred cccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 58999999999975446899999999999999999999999999999999999999999999985
No 29
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.69 E-value=1.9e-05 Score=67.85 Aligned_cols=72 Identities=17% Similarity=0.155 Sum_probs=62.5
Q ss_pred ccccchhhhhhhhhc-CCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhcCcHHH
Q psy3828 57 GLQFPVGRIHRLLRK-GNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEEL 128 (365)
Q Consensus 57 gLqFPVsRI~RlLke-~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~nDeEL 128 (365)
.+.||+++|.|+|++ .....+|+..|...|+-+.|.|+.+|-..|...|...+++.|+++||..|+...+-+
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~ 79 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFE 79 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCT
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcH
Confidence 578999999999996 556789999999999999999999999999999999999999999999999876533
No 30
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.53 E-value=0.00015 Score=59.96 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=56.7
Q ss_pred hhhhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHHh
Q psy3828 279 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 341 (365)
Q Consensus 279 ~YIykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrll 341 (365)
-.|.|+.+..-. ..||..+...+..++.+.++.|+.||..++++.+|+|||..||..|++-+
T Consensus 32 ~~I~Rlar~~Gv-~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 32 PAIRRLARRGGV-KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 348899998754 67999999999999999999999999999999999999999999999854
No 31
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=97.51 E-value=0.00014 Score=55.66 Aligned_cols=59 Identities=17% Similarity=0.340 Sum_probs=54.9
Q ss_pred hhhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHH
Q psy3828 280 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 339 (365)
Q Consensus 280 YIykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvr 339 (365)
-|.|++|+. ....||+.+..-+..++...++.|+.+|...+++.+|+||+.+||+.|++
T Consensus 11 ~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 11 PVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 478899986 46789999999999999999999999999999999999999999999975
No 32
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=97.36 E-value=0.00031 Score=55.96 Aligned_cols=71 Identities=18% Similarity=0.261 Sum_probs=63.5
Q ss_pred cccccccccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhcCc
Q psy3828 52 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 125 (365)
Q Consensus 52 rSsRAgLqFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~nD 125 (365)
|.+..| +|..-|+|+++.+. ..||+..+..-|..++||++.+|++-|...++..+++.|+++||.+|+...
T Consensus 5 r~~~~~--ip~~~I~Riar~~G-v~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 5 RDNIQG--ITKPAIRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp GGGCCS--SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred cccCCC--CCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 445556 67778999999974 489999999999999999999999999999999999999999999999854
No 33
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.24 E-value=0.00061 Score=54.85 Aligned_cols=60 Identities=23% Similarity=0.378 Sum_probs=56.4
Q ss_pred hhhhhhhhcCCC-CCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHH
Q psy3828 280 YIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 339 (365)
Q Consensus 280 YIykVLKQVhpd-~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvr 339 (365)
=|.|+.|..-|+ ..||+.|...|.-....+...|+.+|...+...+|+||+..||+.|++
T Consensus 13 ~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 13 NVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp HHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 388999999775 679999999999999999999999999999999999999999999997
No 34
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.04 E-value=0.00081 Score=52.38 Aligned_cols=66 Identities=11% Similarity=0.177 Sum_probs=60.5
Q ss_pred ccccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhc
Q psy3828 57 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 123 (365)
Q Consensus 57 gLqFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~ 123 (365)
.-.||+.-|.++.+.-. ..+|+..+...|+--+||-..||++-|.+.++..|+++++.+||+.|++
T Consensus 4 ~s~lp~~~v~~iaes~G-i~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 4 GSSISAESMKVIAESIG-VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp SCCCCHHHHHHHHHHTT-CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 34689999999999843 4799999999999999999999999999999999999999999999875
No 35
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=97.04 E-value=0.00066 Score=54.01 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=56.3
Q ss_pred hhhhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHHh
Q psy3828 279 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 341 (365)
Q Consensus 279 ~YIykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrll 341 (365)
-.|.|+.+..-. ..||..+...+...+...++.|+.||..++++.+|+|||..||..|.+-+
T Consensus 14 ~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 14 PAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred HHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 358899998754 67999999999999999999999999999999999999999999998743
No 36
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=97.01 E-value=0.00097 Score=55.90 Aligned_cols=61 Identities=16% Similarity=0.280 Sum_probs=56.2
Q ss_pred hhhhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHH
Q psy3828 279 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 340 (365)
Q Consensus 279 ~YIykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrl 340 (365)
..|.|+.|.- ....||..+...|..++.++++.|+.+|..++++.+|+||+..||..|++-
T Consensus 11 a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr 71 (111)
T 3b0c_T 11 SLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRR 71 (111)
T ss_dssp HHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 4578877776 678999999999999999999999999999999999999999999999884
No 37
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=96.99 E-value=0.0015 Score=59.25 Aligned_cols=61 Identities=18% Similarity=0.355 Sum_probs=58.1
Q ss_pred hhhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHH
Q psy3828 280 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 340 (365)
Q Consensus 280 YIykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrl 340 (365)
=|.|++|++-|+..||..|...|...+..+..-|+.||..++...+|+||+..||-.|+.-
T Consensus 20 ~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~ 80 (179)
T 1jfi_B 20 AINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALES 80 (179)
T ss_dssp HHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 3899999999999999999999999999999999999999999999999999999999874
No 38
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=96.98 E-value=0.0013 Score=56.70 Aligned_cols=64 Identities=19% Similarity=0.267 Sum_probs=57.3
Q ss_pred chh-hhhhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHH
Q psy3828 276 SYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 339 (365)
Q Consensus 276 sy~-~YIykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvr 339 (365)
.|. ..|+|.||+-.---.|+..|.-.|-..+.++...|.+.|...++.+++.+|++|+||.|++
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 25 TFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp SSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 444 4699999996444589999999999999999999999999999999999999999999999
No 39
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=96.85 E-value=0.0011 Score=58.37 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=57.7
Q ss_pred chh-hhhhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHH
Q psy3828 276 SYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 339 (365)
Q Consensus 276 sy~-~YIykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvr 339 (365)
.|. ..|+|.||+-.---.|+..|.-.|-..+.++...|.+.|...++.+++.+|++|+||.|++
T Consensus 44 qFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 44 QFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 444 4699999997555589999999999999999999999999999999999999999999999
No 40
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=96.82 E-value=0.0014 Score=56.41 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=57.1
Q ss_pred cchh-hhhhhhhhhcCC-CCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHH
Q psy3828 275 ESYA-IYIYKVLKQVHP-DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 339 (365)
Q Consensus 275 esy~-~YIykVLKQVhp-d~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvr 339 (365)
-.|- ..|+|.||.-.. ...|++.|--.|-..+..+...|.+.|...++.+++++|++|+||-||+
T Consensus 26 LqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 26 LQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp CSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred ccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 3454 369999998764 3479999999999999999999999999999999999999999999998
No 41
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=96.79 E-value=0.0021 Score=54.90 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=57.8
Q ss_pred chh-hhhhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHH
Q psy3828 276 SYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 339 (365)
Q Consensus 276 sy~-~YIykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvr 339 (365)
.|. ..|+|.||+-.---.||..|.-.|-..+..+...|.+.|...++.+++.+|++|+||.|++
T Consensus 23 ~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 23 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 454 4799999997544589999999999999999999999999999999999999999999999
No 42
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=96.76 E-value=0.0022 Score=54.58 Aligned_cols=64 Identities=22% Similarity=0.258 Sum_probs=57.9
Q ss_pred chh-hhhhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHH
Q psy3828 276 SYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 339 (365)
Q Consensus 276 sy~-~YIykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvr 339 (365)
.|. ..|+|.||...----|+..|--.|-..+..+...|.+.|...++.+++++|++|+||.|++
T Consensus 22 qfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 22 IFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp SSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 444 4699999998756689999999999999999999999999999999999999999999999
No 43
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=96.69 E-value=0.0032 Score=53.95 Aligned_cols=61 Identities=25% Similarity=0.341 Sum_probs=56.8
Q ss_pred hhhhhhhcCCC-CCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHHh
Q psy3828 281 IYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 341 (365)
Q Consensus 281 IykVLKQVhpd-~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrll 341 (365)
|.|+.|++-|+ ..||..|...|.-...-+...|+.+|..++...+|+||+..||..|+.-+
T Consensus 15 I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l 76 (128)
T 2byk_B 15 IGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL 76 (128)
T ss_dssp HHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred HHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence 89999988875 67999999999999999999999999999999999999999999999854
No 44
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=96.68 E-value=0.0027 Score=54.68 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=57.5
Q ss_pred chh-hhhhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHH
Q psy3828 276 SYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 339 (365)
Q Consensus 276 sy~-~YIykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvr 339 (365)
.|- ..|+|.||+-.---.||..|--.|-..+..+...|.+.|...++.+++.+|++|+||.|++
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 25 QFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp SSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 444 4699999997444589999999999999999999999999999999999999999999999
No 45
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=96.60 E-value=0.0038 Score=50.76 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=53.1
Q ss_pred hhhhhhhcCCC-CCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHH
Q psy3828 281 IYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 339 (365)
Q Consensus 281 IykVLKQVhpd-~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvr 339 (365)
|.|++|.- |+ ..||..|--.|.-....+.+.|+.+|...++.++|+||+.++|+.||+
T Consensus 25 IkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~ 83 (97)
T 1n1j_B 25 IKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT 83 (97)
T ss_dssp HHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHh
Confidence 88999986 77 459999999998888888899999999999999999999999999986
No 46
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=96.55 E-value=0.0032 Score=53.14 Aligned_cols=58 Identities=24% Similarity=0.282 Sum_probs=52.5
Q ss_pred hhhhhhhcCCC-CCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHH
Q psy3828 281 IYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 339 (365)
Q Consensus 281 IykVLKQVhpd-~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvr 339 (365)
|.|++|.. |+ ..||..|.-.|.--.--+...|+.+|...++.++|+||+.++|+.||+
T Consensus 47 IkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 47 IKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp HHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence 89999976 55 568999988888888888899999999999999999999999999996
No 47
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=96.51 E-value=0.0021 Score=58.18 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=65.1
Q ss_pred ccccccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhcCcHHHHhh
Q psy3828 55 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 131 (365)
Q Consensus 55 RAgLqFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~nDeEL~~L 131 (365)
--.+.||.+.|.|+|++.--..||+..|...|+-+.+-++.+|--.|...|...+++.|+++||..|+. +-++..+
T Consensus 11 ~eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~-~LgF~~f 86 (179)
T 1jfi_B 11 DDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE-SLGFGSY 86 (179)
T ss_dssp -CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HHTTGGG
T ss_pred hhhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH-hcChHHH
Confidence 346789999999999995336899999999999999999999999999999999999999999999998 3344433
No 48
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=96.37 E-value=0.0083 Score=47.39 Aligned_cols=59 Identities=17% Similarity=0.406 Sum_probs=55.1
Q ss_pred hhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHH
Q psy3828 281 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 339 (365)
Q Consensus 281 IykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvr 339 (365)
+-..++||-|...+...+...|-.+.+|+.+.+.+.|.+||++.+..||..+|||....
T Consensus 11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 66789999999999999999999999999999999999999999999999999997654
No 49
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=96.34 E-value=0.0046 Score=51.74 Aligned_cols=71 Identities=8% Similarity=0.045 Sum_probs=60.4
Q ss_pred ccccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhcCcHHH
Q psy3828 57 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEEL 128 (365)
Q Consensus 57 gLqFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~nDeEL 128 (365)
.+.+|-+-|.|+++++ -..||+..+...|.-+++.++.+|..-|...|+..+++.|+++||.+|++.+..+
T Consensus 5 d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~ 75 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLV 75 (111)
T ss_dssp -----CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCc
Confidence 3568999999999997 5689999999999999999999999999999999999999999999999865433
No 50
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.29 E-value=0.0087 Score=46.54 Aligned_cols=60 Identities=15% Similarity=0.279 Sum_probs=52.5
Q ss_pred hhhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHH
Q psy3828 280 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 340 (365)
Q Consensus 280 YIykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrl 340 (365)
.|.++.+++-= ..+|.++-..|-.-|.+....|+.||.+++++.+|+|||..||..|.++
T Consensus 11 ~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 11 SMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp HHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred HHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 36677777643 4789999999999999999999999999999999999999999999864
No 51
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=95.89 E-value=0.0068 Score=49.47 Aligned_cols=59 Identities=12% Similarity=0.272 Sum_probs=50.0
Q ss_pred hhhhhhhhcCCC-CCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHH
Q psy3828 280 YIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 339 (365)
Q Consensus 280 YIykVLKQVhpd-~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvr 339 (365)
=|.|++|. .|+ ..||..|--.|.-..-.+.+.|+.+|...++.++|+||+.++|+.||+
T Consensus 16 RIkrimK~-~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~ 75 (98)
T 1jfi_A 16 RIKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE 75 (98)
T ss_dssp HHHHHHTT-STTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred HHHHHHHc-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence 38899997 566 569999999888888888899999999999999999999999999986
No 52
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=95.83 E-value=0.018 Score=45.55 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=54.8
Q ss_pred chhhhhhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHH
Q psy3828 276 SYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 340 (365)
Q Consensus 276 sy~~YIykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrl 340 (365)
.|..-+..+..+..++..+++.|+..|.--..+....+.++|..++.+.||.||.++|||-|.|+
T Consensus 8 PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 8 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp HHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence 35555555555556788999999999988888888888889999999999999999999999986
No 53
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.014 Score=47.47 Aligned_cols=78 Identities=14% Similarity=0.052 Sum_probs=56.6
Q ss_pred ccccccchhhhhhhh-hcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhcCcHHHHhhhc
Q psy3828 55 RAGLQFPVGRIHRLL-RKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 133 (365)
Q Consensus 55 RAgLqFPVsRI~RlL-ke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~nDeEL~~Lf~ 133 (365)
|+.|.|-|++|=.-. +++ ...++..+...|+-.++..+.+|.+-+...|+..|++.|++.++.++++.++.|..+++
T Consensus 11 Kaal~~~V~ki~~e~~~~~--g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~~~l~ 88 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSSE--DIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQERVT 88 (90)
T ss_dssp HHHHHHHHHHHHHHHSCSS--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhc--CceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHHHHhh
Confidence 456778888765433 222 13466666666666666666666666667789999999999999999999999999876
Q ss_pred C
Q psy3828 134 G 134 (365)
Q Consensus 134 ~ 134 (365)
+
T Consensus 89 ~ 89 (90)
T 3v9r_A 89 Q 89 (90)
T ss_dssp C
T ss_pred c
Confidence 4
No 54
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=95.71 E-value=0.035 Score=42.86 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=55.1
Q ss_pred hhhhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHHhC
Q psy3828 279 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLL 342 (365)
Q Consensus 279 ~YIykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrllL 342 (365)
.-|.++||.--- ...|..+...|--|+...-+.|+.+|..++.+.+|+||+..||+.|++..+
T Consensus 5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~ 67 (68)
T 1taf_A 5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTL 67 (68)
T ss_dssp HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcc
Confidence 357888887432 467999999999999999999999999999999999999999999998643
No 55
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.017 Score=46.87 Aligned_cols=60 Identities=12% Similarity=0.177 Sum_probs=52.3
Q ss_pred hhhhhhhcCC--CCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHH
Q psy3828 281 IYKVLKQVHP--DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 340 (365)
Q Consensus 281 IykVLKQVhp--d~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrl 340 (365)
+-|+..++-+ +..+|.+++.-|--++.+.++.||.++..+|++.+|+||+..||..++|-
T Consensus 18 V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 18 VEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 4455556644 36699999999999999999999999999999999999999999998873
No 56
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=95.67 E-value=0.0096 Score=51.22 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=61.4
Q ss_pred ccccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhc--CcHHH
Q psy3828 57 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR--NDEEL 128 (365)
Q Consensus 57 gLqFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~--nDeEL 128 (365)
.-.|.+ .|+|.|++-.-...|++.|.-.|...++.++..|...|...++-+++..|++++||.|++ -..||
T Consensus 35 ~esy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGEL 107 (126)
T 1tzy_B 35 KESYSI-YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGEL 107 (126)
T ss_dssp CCCCHH-HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHHH
T ss_pred cccHHH-HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcHHH
Confidence 345766 899999996556689999999999999999999999999999999999999999999986 33444
No 57
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.28 Score=46.14 Aligned_cols=207 Identities=17% Similarity=0.180 Sum_probs=117.8
Q ss_pred cccchhhhhhhhhcC--Cc-----ccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhcCcHHHHh
Q psy3828 58 LQFPVGRIHRLLRKG--NY-----AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNK 130 (365)
Q Consensus 58 LqFPVsRI~RlLke~--~y-----a~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~nDeEL~~ 130 (365)
|-+|=--|.|+.++- .+ ..|..++|-..|--+-|..+-.++|-+.--|...++..|.|+++++|-+
T Consensus 10 ~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarr------- 82 (235)
T 2l5a_A 10 LLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARR------- 82 (235)
T ss_dssp -CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHT-------
T ss_pred ccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHH-------
Confidence 444444455655541 12 3588888888887777877778889887777778888999999999854
Q ss_pred hhcCCeecCCcccCCccccccccccccccccCCCCCccceeccCCCcCcchhhhhhcccccccccCCCCccccCCccc-c
Q psy3828 131 LLSGVTIAQGGVLPNIQAGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATGLLVDEPGDTLDSTSTRQ-T 209 (365)
Q Consensus 131 Lf~~vtIa~GGV~P~i~~gl~l~lekv~~vhgg~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~ 209 (365)
+-+...++.+ | ..-+.- +-|+--+ +-++|. +.= |= +|+-+|..|-.|-.- +
T Consensus 83 irg~~~~p~e-v-me~~~~---~~~~~k~-----------------~~~~i~----~ky-~~-~~~~gd~idl~tG~iv~ 134 (235)
T 2l5a_A 83 IRGQFLVPRG-S-MERHKL---ADENMRK-----------------VWSNII----SKY-ES-IEEQGDLVDLKTGEIVE 134 (235)
T ss_dssp SSCSCCCCSS-S-CHHHHH---HHHHHHH-----------------HHHHHH----HHH-TT-CCCCSCCCSSSSCCCCC
T ss_pred HhhccCCchh-H-HHHHHH---HHHHHHH-----------------HHHHHH----HHH-hc-ccCCCCcccCCCCceee
Confidence 2111111110 0 000000 1111000 001111 111 12 666777777666433 3
Q ss_pred CCCCCcccccc--ccccccccCCcccccccccccccCCCCChhhHHhhcccccccccccccccccCccchhhhhhhhhhh
Q psy3828 210 TDGGLGDSLDV--VTEYFPVPLGASFSESLSSLTTAAGKSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQ 287 (365)
Q Consensus 210 ~~~~~~~~l~~--~~~~~~v~~~~~~~~~~~s~~t~~~~~~~k~~~~~~~~~~~~~~~~~k~~~kr~esy~~YIykVLKQ 287 (365)
-||-+ +.|.. .+.+.++..+..| ++...+-|-|+++.
T Consensus 135 dnGh~-~~l~~~~~~~~~~~r~~~vL----------------------------------------rD~i~i~~~RlaRr 173 (235)
T 2l5a_A 135 DNGHI-KTLTANNSTKDKRTKYTSVL----------------------------------------RDIIDISDEEDGDK 173 (235)
T ss_dssp CCCCC-CSCCCCCGGGCCSSTHHHHH----------------------------------------HHHHHHTCCTTSCC
T ss_pred eCcHH-HHhhcCCCCCccchhHHHHH----------------------------------------HHhhcccHHHHhhc
Confidence 44444 33331 0000000000000 01111112344443
Q ss_pred cCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHHh
Q psy3828 288 VHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 341 (365)
Q Consensus 288 Vhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrll 341 (365)
--- -.||..+..-+...+.+..|.|+.+|..++.+.+|+|+|+.||--|++..
T Consensus 174 gGV-kRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 174 GGV-KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp TTC-CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred CCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 221 35899999999999999999999999999999999999999999998854
No 58
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=95.42 E-value=0.012 Score=49.28 Aligned_cols=61 Identities=21% Similarity=0.185 Sum_probs=54.1
Q ss_pred hhhhhhhhcCC--CCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHH
Q psy3828 280 YIYKVLKQVHP--DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 340 (365)
Q Consensus 280 YIykVLKQVhp--d~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrl 340 (365)
.|-|+++.+-. +..+|.+++..|.-|+.+.++.|+.+|..++++.+|+||+..||..|+|-
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 36677776633 56799999999999999999999999999999999999999999999884
No 59
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=95.39 E-value=0.018 Score=48.73 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=54.6
Q ss_pred hhhhhhhhcCC--CCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHH
Q psy3828 280 YIYKVLKQVHP--DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 340 (365)
Q Consensus 280 YIykVLKQVhp--d~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrl 340 (365)
-|.|+++++-. +..+|.+++.-|.-++.+.++.||.++..+|+..+|+||+..||..++|-
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 36777777643 56799999999999999999999999999999999999999999999873
No 60
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=95.29 E-value=0.036 Score=44.36 Aligned_cols=66 Identities=12% Similarity=0.171 Sum_probs=53.1
Q ss_pred chhhhhhhhhhhcC--CCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHHh
Q psy3828 276 SYAIYIYKVLKQVH--PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 341 (365)
Q Consensus 276 sy~~YIykVLKQVh--pd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrll 341 (365)
.|...+..+-.+.. .+..+++.|+..+---..+..-.+.++|...+.+.||.||.++|||-|.|+-
T Consensus 8 PF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rir 75 (82)
T 3nqj_A 8 PFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 75 (82)
T ss_dssp HHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHc
Confidence 34444444444444 3678999999999888888888888899999999999999999999999973
No 61
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=95.29 E-value=0.015 Score=49.86 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=59.6
Q ss_pred ccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhc--CcHHH
Q psy3828 59 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR--NDEEL 128 (365)
Q Consensus 59 qFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~--nDeEL 128 (365)
.|. ..|+|.|++-.-...|++.|.-.|...++.++..|...|...++-+++..|++++||.|++ -..||
T Consensus 34 sy~-~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGEL 104 (123)
T 2nqb_D 34 SYA-IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGEL 104 (123)
T ss_dssp CSH-HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSCHHH
T ss_pred hHH-HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCcHHH
Confidence 455 4789999996556789999999999999999999999999999999999999999999986 33444
No 62
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=95.22 E-value=0.031 Score=43.16 Aligned_cols=60 Identities=17% Similarity=0.077 Sum_probs=54.6
Q ss_pred hhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhcC
Q psy3828 64 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 124 (365)
Q Consensus 64 RI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~n 124 (365)
-|+++|++. =..|++..++..|.-.+|-.+.+|+.-|...|...|++.|+.++|++||..
T Consensus 6 ~i~~iLk~~-G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 6 VIMSILKEL-NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHT-TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 478889985 347999999999999999999999999999999999999999999999964
No 63
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=94.86 E-value=0.029 Score=49.02 Aligned_cols=60 Identities=22% Similarity=0.205 Sum_probs=52.7
Q ss_pred hhhhhhhcC--CCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHH
Q psy3828 281 IYKVLKQVH--PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 340 (365)
Q Consensus 281 IykVLKQVh--pd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrl 340 (365)
|-|+.+++- .++.+|..++..|--++.+.++.|+.++..+|++.+|+||+..||..++|-
T Consensus 25 VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 25 TGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 445555552 357799999999999999999999999999999999999999999999884
No 64
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=94.66 E-value=0.022 Score=47.59 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=63.0
Q ss_pred ccccccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhcCcHHHHhhhc
Q psy3828 55 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 133 (365)
Q Consensus 55 RAgLqFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~nDeEL~~Lf~ 133 (365)
|+.|.|-|+||-+---. ....|++..+...|+-+++..+.+|..-+...|+..|++.|++.+|.++++.++.|...++
T Consensus 18 Kaal~~~V~rI~~~~g~-~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~ 95 (107)
T 3b0b_B 18 RAAVHYTTGCLCQDVAE-DKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYIT 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh-hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHH
Confidence 56788888887653322 1235888888888888888888888888888899999999999999999999999877765
No 65
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=94.64 E-value=0.024 Score=47.93 Aligned_cols=79 Identities=15% Similarity=0.158 Sum_probs=61.4
Q ss_pred cccccccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhcCcHHHHhhhc
Q psy3828 54 SRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 133 (365)
Q Consensus 54 sRAgLqFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~nDeEL~~Lf~ 133 (365)
=++.|.|.|+||=+-.-.. ....++..+...|+-+++..+.+|..-+...|+..|++.|++.+|.++++.++.|..+++
T Consensus 25 LKaal~y~V~rIvke~gae-r~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~l~ 103 (113)
T 4dra_A 25 LKAAVHYTVGCLCEEVALD-KEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYIT 103 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHHHH
Confidence 3678889998876533221 122477777777777777777777777778899999999999999999999999988875
No 66
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=94.59 E-value=0.06 Score=46.79 Aligned_cols=58 Identities=10% Similarity=0.173 Sum_probs=48.0
Q ss_pred hhhhhhhcCCCC-CcchhHHHHHHhHHHHHHHHHHHHHhhhh-hcCCCcccChhHHHHHHH
Q psy3828 281 IYKVLKQVHPDT-GVSSKAMSIMNSFVNDIFERIAAESSRLA-HYNKRSTITSREIQTAVR 339 (365)
Q Consensus 281 IykVLKQVhpd~-gISskam~ImnSfvnDiferIa~EAs~La-~~nkr~TitsreIqtAvr 339 (365)
|.|++|.- |+. .||..|.-+|.-..--+...|+.+|...+ +.++|+||+.++|..||+
T Consensus 25 IKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 25 VRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp ----CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred HHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 88888885 775 48999988888877777788999999999 999999999999999997
No 67
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=94.50 E-value=0.058 Score=44.59 Aligned_cols=66 Identities=21% Similarity=0.212 Sum_probs=52.7
Q ss_pred cchhhhhhhhhhhcCC---CCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHH
Q psy3828 275 ESYAIYIYKVLKQVHP---DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 340 (365)
Q Consensus 275 esy~~YIykVLKQVhp---d~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrl 340 (365)
-.|...+..+..+..+ +.-+++.|+..|.--..+..-.+.++|..++.+.+|.||..+|||-|.|+
T Consensus 31 ~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 99 (100)
T 2yfv_A 31 MPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI 99 (100)
T ss_dssp HHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence 3455555555555555 78899999998888888888888889999999999999999999999885
No 68
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=94.50 E-value=0.07 Score=58.94 Aligned_cols=75 Identities=16% Similarity=0.317 Sum_probs=65.2
Q ss_pred ccchhhhhhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHHhCcHHHHhhHHhh
Q psy3828 274 KESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 353 (365)
Q Consensus 274 ~esy~~YIykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrllLPgeLakhAvse 353 (365)
+.-|-.-|+||+.||||+..|.-.|+.-+++++--+.-.|+. ...-|..|++..|.-.+|..+.++|+.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (1049)
T 3ksy_A 20 RGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQ----------AQPRSASDVEERVQKSFPHPIDKWAIAD 89 (1049)
T ss_dssp SSSSHHHHHHHHHHHCTTSBCCHHHHHHHHHHHHHHHHHHHH----------TCCCSHHHHHHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCccHhHHHHHHHHHHHHHHHHhc----------CCCccHHHHHHHHHHhCCCchHHHHHHH
Confidence 456778899999999999999999999999999877776664 4467889999999999999999999999
Q ss_pred hhhhh
Q psy3828 354 GTKAV 358 (365)
Q Consensus 354 GtkAV 358 (365)
+-.|.
T Consensus 90 ~~~~~ 94 (1049)
T 3ksy_A 90 AQSAI 94 (1049)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 86663
No 69
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=94.43 E-value=0.065 Score=46.54 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=53.6
Q ss_pred hhhhhhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHH
Q psy3828 277 YAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 340 (365)
Q Consensus 277 y~~YIykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrl 340 (365)
|...|..+..+..+|.-+++.|+..|.-...+....+.+++..++.+.+|.||..+|||-|.|+
T Consensus 68 F~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 131 (136)
T 1tzy_C 68 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_dssp HHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHH
Confidence 4444444444446789999999999988888888888889999999999999999999999986
No 70
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=94.35 E-value=0.056 Score=46.13 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=45.0
Q ss_pred CcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHH
Q psy3828 293 GVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 340 (365)
Q Consensus 293 gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrl 340 (365)
.||..+..-+...+.+.+|.|+.+|..++.+.+|+|+|..||--|++.
T Consensus 64 RIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr 111 (121)
T 2ly8_A 64 RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 111 (121)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 389999999999999999999999999999999999999999998874
No 71
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=93.84 E-value=0.094 Score=45.81 Aligned_cols=61 Identities=13% Similarity=0.210 Sum_probs=49.9
Q ss_pred hhhhhhhcC------CCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHHh
Q psy3828 281 IYKVLKQVH------PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 341 (365)
Q Consensus 281 IykVLKQVh------pd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrll 341 (365)
|-|+++++- -+.-+++.|+..|--...+..-.+.++|..++.+.+|.||..+|||-|.|+-
T Consensus 67 F~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrir 133 (140)
T 3nqu_A 67 FSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 133 (140)
T ss_dssp HHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhc
Confidence 344555543 3678999999988887777777787899999999999999999999999973
No 72
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=93.69 E-value=0.084 Score=46.87 Aligned_cols=60 Identities=13% Similarity=0.226 Sum_probs=49.2
Q ss_pred hhhhhhhcC------CCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHHHHH
Q psy3828 281 IYKVLKQVH------PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 340 (365)
Q Consensus 281 IykVLKQVh------pd~gISskam~ImnSfvnDiferIa~EAs~La~~nkr~TitsreIqtAvrl 340 (365)
|-|+++++- -+.-+++.|+..|--...+..-.|.++|..+|.+.+|.||..+|||-|.|+
T Consensus 83 F~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 83 FSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp HHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 345555553 356789999998887777777777789999999999999999999999997
No 73
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=93.35 E-value=0.053 Score=47.36 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=62.0
Q ss_pred ccccccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhcCcHHHHhhhcC
Q psy3828 55 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSG 134 (365)
Q Consensus 55 RAgLqFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~nDeEL~~Lf~~ 134 (365)
++.|.|-|++|=.-.-.. ....|+..+...|+-+++..+.+|..-+-..|+..|++.|++.+|.++++.++.|..+++.
T Consensus 18 KaAl~y~VgkIvee~~~~-~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~ 96 (140)
T 3vh5_A 18 RAAVHYTTGALAQDVAED-KGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQ 96 (140)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHH
Confidence 567888888876533221 2345777787778888877777777777788999999999999999999999999988863
No 74
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=92.64 E-value=0.11 Score=42.07 Aligned_cols=64 Identities=22% Similarity=0.375 Sum_probs=52.3
Q ss_pred ccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhc-CCccccchhhhhhhc
Q psy3828 59 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN-KKTRIIPRHLQLAIR 123 (365)
Q Consensus 59 qFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~-kkkrItP~hI~lAI~ 123 (365)
.||=..|+|+++.- ....++....+.|+++--.++.||+|.|....... ....|.|.||+.|.+
T Consensus 16 ~f~k~~vKrl~~~~-~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~r 80 (89)
T 1bh9_B 16 AFPKAAIKRLIQSI-TGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR 80 (89)
T ss_dssp CCCHHHHHHHHHHH-HSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 35556688888763 56789999999999999999999999999876554 456899999998864
No 75
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=92.44 E-value=0.14 Score=40.52 Aligned_cols=65 Identities=25% Similarity=0.251 Sum_probs=53.7
Q ss_pred ccchhhhhhhhhcC----CcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhc
Q psy3828 59 QFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 123 (365)
Q Consensus 59 qFPVsRI~RlLke~----~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~ 123 (365)
-+|.--|.|++++- .-..|++++|...|--..|....++.|-+..-|...|+..|.|+||++|.+
T Consensus 3 li~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 3 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp CSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 45555566666652 135799999999999999999999999998889999999999999999865
No 76
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=92.24 E-value=0.13 Score=41.18 Aligned_cols=64 Identities=22% Similarity=0.130 Sum_probs=53.4
Q ss_pred cchhhhhhhhhcCC------cccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhc
Q psy3828 60 FPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 123 (365)
Q Consensus 60 FPVsRI~RlLke~~------ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~ 123 (365)
+|---|.|++++-. ...|++++|...|--+.|....++.|-+..-|...++..|.|++|++|.+
T Consensus 4 I~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 4 IRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp SCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 44455666666522 35799999999999999999999999998889889999999999999865
No 77
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=91.13 E-value=0.18 Score=44.10 Aligned_cols=68 Identities=22% Similarity=0.131 Sum_probs=59.1
Q ss_pred cccccchhhhhhhhhcCC------cccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhc
Q psy3828 56 AGLQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 123 (365)
Q Consensus 56 AgLqFPVsRI~RlLke~~------ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~ 123 (365)
.+|-+|.--|.|++++-. ...|+.++|...|--+.|..+.++.|-+..-|...++..|+|+||++|.+
T Consensus 58 t~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 58 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp -CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 467888888888888732 35799999999999999999999999998888888999999999999865
No 78
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=91.10 E-value=0.14 Score=45.50 Aligned_cols=69 Identities=22% Similarity=0.115 Sum_probs=59.5
Q ss_pred cccccchhhhhhhhhcCC------cccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhcC
Q psy3828 56 AGLQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 124 (365)
Q Consensus 56 AgLqFPVsRI~RlLke~~------ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~n 124 (365)
.+|-+|.--|.|++++-. ...|+.++|...|--+.|..+.+++|-+..-|...++..|+|+||++|.+=
T Consensus 74 teLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 74 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp -CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 467888888889888732 247999999999999999999999999988888889999999999999763
No 79
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=90.18 E-value=0.39 Score=38.18 Aligned_cols=64 Identities=20% Similarity=0.251 Sum_probs=55.9
Q ss_pred ccccchhhhhhhhhcC--CcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhh
Q psy3828 57 GLQFPVGRIHRLLRKG--NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 120 (365)
Q Consensus 57 gLqFPVsRI~RlLke~--~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~l 120 (365)
+-.||..-|+|+|+.. +..-||+.+|-.-++..|+-|+.|.+.+|...|+..+...|..+||+.
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEk 71 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEK 71 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHH
Confidence 4479999999999883 235799999999999999999999999999999888888899999986
No 80
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=89.94 E-value=0.24 Score=40.88 Aligned_cols=68 Identities=24% Similarity=0.222 Sum_probs=55.7
Q ss_pred cccccchhhhhhhhhcCC--c-----ccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhc
Q psy3828 56 AGLQFPVGRIHRLLRKGN--Y-----AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 123 (365)
Q Consensus 56 AgLqFPVsRI~RlLke~~--y-----a~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~ 123 (365)
.+|-+|..-|.|++++-. + ..|+.++|-..|--+.|..+.++.|-+..-|...++..|.|+||++|.+
T Consensus 24 t~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 24 TDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred chhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 477888888888888732 2 5799999999999999999999999998889999999999999999864
No 81
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=89.93 E-value=0.3 Score=42.36 Aligned_cols=68 Identities=25% Similarity=0.255 Sum_probs=58.9
Q ss_pred cccccchhhhhhhhhcC----CcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhc
Q psy3828 56 AGLQFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 123 (365)
Q Consensus 56 AgLqFPVsRI~RlLke~----~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~ 123 (365)
.+|-+|.--|.|++++- .-..|+.++|...|.-..|..+.++.|-+..-|...++..|.|+||++|.+
T Consensus 59 t~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 36778888888888773 124799999999999999999999999999889999999999999999864
No 82
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=89.62 E-value=0.48 Score=40.39 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=46.5
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhc
Q psy3828 75 AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 123 (365)
Q Consensus 75 a~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~ 123 (365)
..|||..+-.-+..+||.+..+|+.-|...+...++|.|+..||.+|++
T Consensus 62 vkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alk 110 (121)
T 2ly8_A 62 SKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 110 (121)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999876
No 83
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=88.94 E-value=0.63 Score=37.31 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=56.0
Q ss_pred cccccchhhhhhhhhcCC--cccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhh
Q psy3828 56 AGLQFPVGRIHRLLRKGN--YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA 121 (365)
Q Consensus 56 AgLqFPVsRI~RlLke~~--ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lA 121 (365)
++..||..-|.|+|+..- ..-||+..|-..++..|+-|+.|.+-.|...|...+...|..+||+..
T Consensus 9 ~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki 76 (84)
T 4dra_E 9 AGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKV 76 (84)
T ss_dssp --CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 466899999999999632 347999999999999999999999999999888877778999999863
No 84
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=88.21 E-value=0.4 Score=45.05 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=52.9
Q ss_pred hhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhcC
Q psy3828 65 IHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 124 (365)
Q Consensus 65 I~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~n 124 (365)
+.|+.+.+ =+.|||..+-.-+..+||.+..+|+.-|...|...+++.|++.+|.+|+..
T Consensus 167 ~~RlaRrg-GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr 225 (235)
T 2l5a_A 167 DEEDGDKG-GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 225 (235)
T ss_dssp CCTTSCCT-TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred HHHHhhcC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 44677775 348999999999999999999999999999999999999999999999874
No 85
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=74.84 E-value=2.2 Score=34.88 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=35.6
Q ss_pred HHHHHHHHhHHHhhcCCccccchhhhhhhcCcHHHHhhhcC
Q psy3828 94 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSG 134 (365)
Q Consensus 94 taEILELAgn~A~~~kkkrItP~hI~lAI~nDeEL~~Lf~~ 134 (365)
+.++|+.|-+.|...+...|+|+||-+|+-++++...+|+.
T Consensus 6 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~~ 46 (143)
T 1k6k_A 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEA 46 (143)
T ss_dssp HHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHHH
Confidence 46789999999999999999999999999988876666653
No 86
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=61.06 E-value=4.5 Score=33.16 Aligned_cols=33 Identities=30% Similarity=0.208 Sum_probs=29.4
Q ss_pred HHHHHHHHhHHHhhcCCccccchhhhhhhcCcH
Q psy3828 94 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 126 (365)
Q Consensus 94 taEILELAgn~A~~~kkkrItP~hI~lAI~nDe 126 (365)
+.++|+.|-+.|...+...|+|+||-+|+-+++
T Consensus 10 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 10 FQLALADAQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 357899999999999999999999999987765
No 87
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=59.62 E-value=26 Score=28.02 Aligned_cols=61 Identities=16% Similarity=0.272 Sum_probs=48.9
Q ss_pred hhhhhhhcCCCCCcchhHHHHHHhHHHHHHHHHHHHHhhhhhcC-CCcccChhHHHHHHHHhC
Q psy3828 281 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYN-KRSTITSREIQTAVRLLL 342 (365)
Q Consensus 281 IykVLKQVhpd~gISskam~ImnSfvnDiferIa~EAs~La~~n-kr~TitsreIqtAvrllL 342 (365)
|.|+..++. +.++|....-+|..+-.-+.-.|.++|-.+..-. ....|.++.|+.|+|.+-
T Consensus 22 vKrl~~~~~-~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 22 IKRLIQSIT-GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp HHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 666667775 6788888888888888888888888998887654 456999999999999763
No 88
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=58.44 E-value=3.7 Score=33.81 Aligned_cols=40 Identities=30% Similarity=0.312 Sum_probs=32.2
Q ss_pred HHHHHHHHhHHHhhcCCccccchhhhhhhcCcHH--HHhhhc
Q psy3828 94 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE--LNKLLS 133 (365)
Q Consensus 94 taEILELAgn~A~~~kkkrItP~hI~lAI~nDeE--L~~Lf~ 133 (365)
+.++|+.|-+.|...+...|+|+||-+|+-++++ ...+++
T Consensus 10 ~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~ 51 (150)
T 2y1q_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQ 51 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHH
Confidence 4678999999999999999999999999876543 444443
No 89
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=57.65 E-value=3.4 Score=34.40 Aligned_cols=40 Identities=25% Similarity=0.314 Sum_probs=32.4
Q ss_pred HHHHHHHHhHHHhhcCCccccchhhhhhhcCcH--HHHhhhc
Q psy3828 94 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLLS 133 (365)
Q Consensus 94 taEILELAgn~A~~~kkkrItP~hI~lAI~nDe--EL~~Lf~ 133 (365)
+.++|+.|-+.|+..+...|+|+||-+|+-.++ ....+++
T Consensus 12 a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 53 (145)
T 3fes_A 12 AKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLS 53 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHH
Confidence 467899999999999999999999999987654 3444443
No 90
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=57.56 E-value=5.5 Score=33.08 Aligned_cols=40 Identities=28% Similarity=0.268 Sum_probs=32.4
Q ss_pred HHHHHHHHhHHHhhcCCccccchhhhhhhcCc--HHHHhhhc
Q psy3828 94 AAEVLELAGNAARDNKKTRIIPRHLQLAIRND--EELNKLLS 133 (365)
Q Consensus 94 taEILELAgn~A~~~kkkrItP~hI~lAI~nD--eEL~~Lf~ 133 (365)
+.++|+.|-+.|+..+...|+|+||-+|+-.+ .....+|+
T Consensus 11 ~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 52 (146)
T 3fh2_A 11 ARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALE 52 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHH
Confidence 46789999999999999999999999998765 34444544
No 91
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=56.85 E-value=15 Score=28.66 Aligned_cols=66 Identities=17% Similarity=0.260 Sum_probs=56.8
Q ss_pred ccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhhhcC
Q psy3828 59 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 124 (365)
Q Consensus 59 qFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lAI~n 124 (365)
.++-.++..++++-.-...+...+--.|.-+-+=|+..+++.|...|+..+...+.++++++.+..
T Consensus 5 vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 456677888888865667888889999999999999999999999999999999999999987653
No 92
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=50.47 E-value=6.1 Score=32.80 Aligned_cols=40 Identities=35% Similarity=0.427 Sum_probs=32.3
Q ss_pred HHHHHHHHhHHHhhcCCccccchhhhhhhcCcH--HHHhhhc
Q psy3828 94 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLLS 133 (365)
Q Consensus 94 taEILELAgn~A~~~kkkrItP~hI~lAI~nDe--EL~~Lf~ 133 (365)
+.++|+.|...|+..+...|+++||-+|+-.|+ ....+|+
T Consensus 86 ~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~ 127 (145)
T 3fes_A 86 SKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILN 127 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHH
Confidence 356889999999999999999999999998654 3555654
No 93
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=50.32 E-value=7.6 Score=33.90 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=37.1
Q ss_pred HHHHHHHHH---HHHHHHHhHHHhhcCCccccchhhhhhhcCcH--HHHhhhc
Q psy3828 86 LAAVMEYLA---AEVLELAGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLLS 133 (365)
Q Consensus 86 LaAVLEYLt---aEILELAgn~A~~~kkkrItP~hI~lAI~nDe--EL~~Lf~ 133 (365)
+...++-|+ .++|+.|.+.|+..+...|.|+||-+|+-.++ ....+++
T Consensus 18 l~~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~ 70 (171)
T 3zri_A 18 LPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLK 70 (171)
T ss_dssp HHHHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHH
Confidence 455555554 56899999999999999999999999998764 3455554
No 94
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=50.02 E-value=8.4 Score=31.93 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=32.1
Q ss_pred HHHHHHHhHHHhhcCCccccchhhhhhhcCcH--HHHhhhc
Q psy3828 95 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLLS 133 (365)
Q Consensus 95 aEILELAgn~A~~~kkkrItP~hI~lAI~nDe--EL~~Lf~ 133 (365)
.++|+.|...|+..+...|+++||-+|+-.|+ ....+|+
T Consensus 87 ~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~ 127 (146)
T 3fh2_A 87 KKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLV 127 (146)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHH
Confidence 57889999999999999999999999998554 4556665
No 95
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=42.55 E-value=64 Score=25.61 Aligned_cols=55 Identities=16% Similarity=0.208 Sum_probs=38.4
Q ss_pred hhhhhhhhhcC--CCCCcchhHHHHHH----hHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHH
Q psy3828 279 IYIYKVLKQVH--PDTGVSSKAMSIMN----SFVNDIFERIAAESSRLAHYNKRSTITSREIQTA 337 (365)
Q Consensus 279 ~YIykVLKQVh--pd~gISskam~Imn----SfvnDiferIa~EAs~La~~nkr~TitsreIqtA 337 (365)
.-|-|+|++-+ +++.||..|+..+. -||+.-+.|-+.+|- -....+|...+++.-
T Consensus 16 ~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~----~e~~~~le~e~LEki 76 (84)
T 4dra_E 16 ELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQ----AEDALRVDVDQLEKV 76 (84)
T ss_dssp HHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTCSSBCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCcccHHHHHHH
Confidence 34888888775 67999999987654 455555555555544 346668888888763
No 96
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=42.34 E-value=54 Score=25.76 Aligned_cols=54 Identities=15% Similarity=0.276 Sum_probs=39.4
Q ss_pred hhhhhhhhcCC--CCCcchhHHHH----HHhHHHHHHHHHHHHHhhhhhcCCCcccChhHHHHH
Q psy3828 280 YIYKVLKQVHP--DTGVSSKAMSI----MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTA 337 (365)
Q Consensus 280 YIykVLKQVhp--d~gISskam~I----mnSfvnDiferIa~EAs~La~~nkr~TitsreIqtA 337 (365)
-|.|+|++.+. .+.|++.|+.. |+-||+.-+.|-+.+| .-.+...|...+++.-
T Consensus 13 lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a----~~e~~~~le~~~LEki 72 (81)
T 3b0b_C 13 TVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQA----QAEDLEKVDIEHVEKV 72 (81)
T ss_dssp HHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTTCSEECHHHHHHH
T ss_pred HHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCCCeecHHHHHHH
Confidence 47888888866 68999999765 5566666677766665 3356678888888763
No 97
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=41.79 E-value=20 Score=29.11 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=32.2
Q ss_pred HHHHHHHHhHHHhhcCCccccchhhhhhhcC-cHHHHhhhc
Q psy3828 94 AAEVLELAGNAARDNKKTRIIPRHLQLAIRN-DEELNKLLS 133 (365)
Q Consensus 94 taEILELAgn~A~~~kkkrItP~hI~lAI~n-DeEL~~Lf~ 133 (365)
+.++|+.|...|+..+...|+++||-+|+-. |.....+++
T Consensus 87 ~~~vl~~A~~~a~~~~~~~i~~ehlLlall~~~~~~~~~L~ 127 (148)
T 1khy_A 87 LVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILK 127 (148)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHcCCcHHHHHHH
Confidence 4568899999999999999999999999984 444555554
No 98
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=41.52 E-value=14 Score=29.94 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=32.2
Q ss_pred HHHHHHHHhHHHhhcCCccccchhhhhhhcCcHH--HHhhhc
Q psy3828 94 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE--LNKLLS 133 (365)
Q Consensus 94 taEILELAgn~A~~~kkkrItP~hI~lAI~nDeE--L~~Lf~ 133 (365)
+.++|+.|...|+..+...|.++||-+|+-.+++ ...+++
T Consensus 84 ~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~ 125 (143)
T 1k6k_A 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLR 125 (143)
T ss_dssp HHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHH
Confidence 4578999999999999999999999999986653 445554
No 99
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=39.42 E-value=39 Score=25.20 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhhhhcCCCcccChhHHHHHHHHhCcH
Q psy3828 309 IFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 344 (365)
Q Consensus 309 iferIa~EAs~La~~nkr~TitsreIqtAvrllLPg 344 (365)
=.+.++.||+..+-...+..||..++..|++-+-|+
T Consensus 39 Di~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 39 DINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp HHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccC
Confidence 345788899999888888899999999999999996
No 100
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=38.93 E-value=43 Score=29.37 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=48.8
Q ss_pred ccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhh
Q psy3828 59 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 120 (365)
Q Consensus 59 qFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~l 120 (365)
.+++.+++|++++. -.--|..+-.-=+..++|-=+.++|+.|-..|+.|++.-|.|+||-.
T Consensus 2 vm~~~~~e~lFR~a-a~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPI 62 (148)
T 1wwi_A 2 LMKVAEFERLFRQA-AGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPI 62 (148)
T ss_dssp CSCHHHHHHHHHHH-HCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCC
T ss_pred cCCHHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCc
Confidence 46888999999983 33345555555677788888899999999999999999999999864
No 101
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=37.38 E-value=18 Score=31.47 Aligned_cols=32 Identities=16% Similarity=0.103 Sum_probs=29.2
Q ss_pred HHHHHHHhHHHh-hcCCccccchhhhhhhcCcH
Q psy3828 95 AEVLELAGNAAR-DNKKTRIIPRHLQLAIRNDE 126 (365)
Q Consensus 95 aEILELAgn~A~-~~kkkrItP~hI~lAI~nDe 126 (365)
.++|+.|..+|+ ..+...|.++||-+|+-.|+
T Consensus 104 ~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~ 136 (171)
T 3zri_A 104 VELLQEAWLLSSTELEQAELRSGAIFLAALTRA 136 (171)
T ss_dssp HHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhCh
Confidence 467999999999 99999999999999999887
No 102
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=33.19 E-value=38 Score=25.98 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=29.6
Q ss_pred HHHHHHHHhhhhhcCCCcccChhHHHHHHHHhCcHHHH
Q psy3828 310 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELA 347 (365)
Q Consensus 310 ferIa~EAs~La~~nkr~TitsreIqtAvrllLPgeLa 347 (365)
.+.++.||+-.+-......|+..|+..|++-+.||-..
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~ 77 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKK 77 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCccc
Confidence 45778888888877778899999999999999998544
No 103
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=32.80 E-value=38 Score=25.41 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=29.3
Q ss_pred HHHHHHHHhhhhhcCCCcccChhHHHHHHHHhCcHH
Q psy3828 310 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE 345 (365)
Q Consensus 310 ferIa~EAs~La~~nkr~TitsreIqtAvrllLPge 345 (365)
.+.++.||+..+-...+..||..+++.|++-+.+|.
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~ 72 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTD 72 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCc
Confidence 356888888888888888999999999999997653
No 104
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=32.22 E-value=30 Score=36.00 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=35.0
Q ss_pred HHHHHHHHhHHHhhcCCccccchhhhhhhcCcHHHHhhhc
Q psy3828 94 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 133 (365)
Q Consensus 94 taEILELAgn~A~~~kkkrItP~hI~lAI~nDeEL~~Lf~ 133 (365)
+.++|+.|-+.|+..+...|+|+||-+|+-.|++...+++
T Consensus 6 a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL~ 45 (758)
T 1r6b_X 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (758)
T ss_dssp HHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHHH
Confidence 4678999999999999999999999999998887766664
No 105
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=31.35 E-value=34 Score=35.25 Aligned_cols=65 Identities=20% Similarity=0.383 Sum_probs=47.2
Q ss_pred cchhhhhhhhhhhcCCCCCcchhHHHHHHhHHHHH------------------HHHHHHHHhhhhhcCCCcccChhHHHH
Q psy3828 275 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDI------------------FERIAAESSRLAHYNKRSTITSREIQT 336 (365)
Q Consensus 275 esy~~YIykVLKQVhpd~gISskam~ImnSfvnDi------------------ferIa~EAs~La~~nkr~TitsreIqt 336 (365)
+....||..+-+.++| .+|.+|...+..+..++ .+.+..-|.-+|....+.+++..|++.
T Consensus 505 ~~l~~~i~~ar~~~~p--~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ 582 (595)
T 3f9v_A 505 DTLRKYIAYARKYVTP--KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAER 582 (595)
T ss_dssp TTTHHHHHHHHHHHCC--CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHH
T ss_pred HHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHH
Confidence 3455566555556677 56777777766665432 566777777788888999999999999
Q ss_pred HHHHh
Q psy3828 337 AVRLL 341 (365)
Q Consensus 337 Avrll 341 (365)
|++|+
T Consensus 583 Ai~l~ 587 (595)
T 3f9v_A 583 AINIM 587 (595)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99976
No 106
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=29.32 E-value=35 Score=27.80 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=28.6
Q ss_pred HHHHHHHHhHHHhhcCCccccchhhhhhhcCcH
Q psy3828 94 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 126 (365)
Q Consensus 94 taEILELAgn~A~~~kkkrItP~hI~lAI~nDe 126 (365)
+.++|+.|...|+..+...|+++||-+|+-.++
T Consensus 84 ~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~ 116 (150)
T 2y1q_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREG 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCC
Confidence 457889999999999999999999999997554
No 107
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=28.30 E-value=37 Score=26.12 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhhhhcCCCcccChhHHHHHHHHhCcH
Q psy3828 309 IFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 344 (365)
Q Consensus 309 iferIa~EAs~La~~nkr~TitsreIqtAvrllLPg 344 (365)
=++.++.||+..+-......|+..++..|+.-+.|+
T Consensus 49 DL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 49 EVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 345688888888877778899999999999988886
No 108
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=26.15 E-value=49 Score=24.37 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhhhhcCCCcccChhHHHHHHHHhCcH
Q psy3828 309 IFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 344 (365)
Q Consensus 309 iferIa~EAs~La~~nkr~TitsreIqtAvrllLPg 344 (365)
=.+.++.||+..+-...+..||..++..|++-++.+
T Consensus 41 Di~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 41 EVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 346788899988888888999999999999876543
No 109
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=24.12 E-value=1.1e+02 Score=27.70 Aligned_cols=57 Identities=11% Similarity=0.114 Sum_probs=41.9
Q ss_pred CCCCcchhHHHHHHhHHHH-------HHHHHHHHHhhhhhcCCCcccChhHHHHHHHHhCcHHH
Q psy3828 290 PDTGVSSKAMSIMNSFVND-------IFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL 346 (365)
Q Consensus 290 pd~gISskam~ImnSfvnD-------iferIa~EAs~La~~nkr~TitsreIqtAvrllLPgeL 346 (365)
++..+|.+++..+..+... -.+.+..-|..++...++.+|+..+|..|+.++|+.-+
T Consensus 264 ~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~ 327 (350)
T 1g8p_A 264 PKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRL 327 (350)
T ss_dssp GGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhcc
Confidence 4457888888777666543 23456666666777788889999999999999887544
No 110
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=21.48 E-value=47 Score=29.74 Aligned_cols=62 Identities=13% Similarity=0.065 Sum_probs=48.8
Q ss_pred ccchhhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHhhcCCccccchhhhhh
Q psy3828 59 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA 121 (365)
Q Consensus 59 qFPVsRI~RlLke~~ya~RVs~~ApVYLaAVLEYLtaEILELAgn~A~~~kkkrItP~hI~lA 121 (365)
.+++.+++|++++. -.--|..+-.-=+..++|-=+.++|+.|-..|+.|++--|.|+||-..
T Consensus 26 vmg~~kferlFR~a-agLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLPIT 87 (171)
T 1r4v_A 26 PKGFDKLDHYFRTE-LDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLNIT 87 (171)
T ss_dssp CTTHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSCCC
T ss_pred cCChHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCcc
Confidence 78999999999983 233444445555677778888889999999999999999999998643
No 111
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.08 E-value=1e+02 Score=26.92 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=29.3
Q ss_pred chhhhhhhhhhh--------cCCCC--CcchhHHHHHHhHHHHHHHHHH
Q psy3828 276 SYAIYIYKVLKQ--------VHPDT--GVSSKAMSIMNSFVNDIFERIA 314 (365)
Q Consensus 276 sy~~YIykVLKQ--------Vhpd~--gISskam~ImnSfvnDiferIa 314 (365)
....-|.++|+| .+|+- .||++.++.||.+...|++.+|
T Consensus 98 asg~iiR~~LQqLE~~g~Vek~~~gGR~lT~~G~~~LD~iA~~v~~~~~ 146 (146)
T 3iz6_S 98 SSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDVTIA 146 (146)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEETTTEEEECHHHHHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHCCCeEecCCCCcEECHhHHHHHHHHHHHHHHhhC
Confidence 345667777776 36643 5999999999999988887653
Done!