RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3828
(365 letters)
>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 92
Score = 182 bits (463), Expect = 2e-58
Identities = 86/92 (93%), Positives = 90/92 (97%)
Query: 273 RKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSR 332
RKESY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSR
Sbjct: 1 RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSR 60
Query: 333 EIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 364
EIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS
Sbjct: 61 EIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 92
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 106
Score = 181 bits (462), Expect = 3e-58
Identities = 93/101 (92%), Positives = 98/101 (97%)
Query: 48 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD 107
K+K+RSSRAGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARD
Sbjct: 1 KAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARD 60
Query: 108 NKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 148
NKKTRIIPRHLQLAIRNDEELNKLL VTIAQGGVLPNIQA
Sbjct: 61 NKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQA 101
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 176 bits (447), Expect = 8e-56
Identities = 65/99 (65%), Positives = 81/99 (81%)
Query: 50 KTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNK 109
+RS++AG+ FPVGR+ R ++KG+ R+G GAPVY+AAV+EYL AE+LELA NAARDNK
Sbjct: 2 TSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNK 61
Query: 110 KTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 148
K R+ PRH+ LA+ NDEELN+LL GVTIA GGVLPNI
Sbjct: 62 KGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHP 100
Score = 34.0 bits (78), Expect = 0.006
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 281 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 339
+ + +K+ HP + A M + + + I + A NK+ +T R I AV
Sbjct: 17 MLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 75
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant
H2A.Z [TaxId: 9606]}
Length = 103
Score = 157 bits (399), Expect = 8e-49
Identities = 64/101 (63%), Positives = 76/101 (75%), Gaps = 2/101 (1%)
Query: 49 SKTRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARD 107
+ +RS RAGLQFPVGRIHR L+ + RVGA A VY AA++EYL AEVLELAGNA++D
Sbjct: 1 AVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD 60
Query: 108 NKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 148
K RI PRHLQLAIR DEEL+ L+ TIA GGV+P+I
Sbjct: 61 LKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHK 100
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 148 bits (376), Expect = 2e-44
Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 38 GRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEV 97
+ A++ + R R L PV +IH LL++ ++ VY+ AV+EY++A++
Sbjct: 78 DKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEV-LGYKIDHQVSVYIVAVLEYISADI 136
Query: 98 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 132
L+LAGN R+ + I + +++A+ D+ L +
Sbjct: 137 LKLAGNYVRNIRHYEITKQDIKVAMCADKVLMDMF 171
Score = 90.2 bits (224), Expect = 3e-22
Identities = 14/97 (14%), Positives = 36/97 (37%), Gaps = 10/97 (10%)
Query: 267 KKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKR 326
++ + + + KV QVHP + A+ + + + + R
Sbjct: 8 EENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQAQPR------- 60
Query: 327 STITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 363
++ +++ V+ P + K A+++ A+ K
Sbjct: 61 ---SASDVEERVQKSFPHPIDKWAIADAQSAIEKRKR 94
Score = 29.4 bits (66), Expect = 0.38
Identities = 6/46 (13%), Positives = 17/46 (36%)
Query: 294 VSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 339
+ + + + + I I + + IT ++I+ A+
Sbjct: 117 IDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAMC 162
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 88.3 bits (219), Expect = 9e-23
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 59 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 118
+FP RI ++++ +V A PV ++ +E +L+ A + + HL
Sbjct: 2 RFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 61
Query: 119 QLAI 122
+ I
Sbjct: 62 KQCI 65
Score = 35.9 bits (83), Expect = 5e-04
Identities = 7/58 (12%), Positives = 25/58 (43%)
Query: 281 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAV 338
I K+++ V++ I++ + E + ++ ++ T+T+ ++ +
Sbjct: 8 IKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCI 65
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 86.0 bits (213), Expect = 6e-21
Identities = 11/80 (13%), Positives = 32/80 (40%)
Query: 281 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 340
I ++ +Q + +S A + FV + E +A + + + + T+ ++ +
Sbjct: 7 IERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADV 66
Query: 341 LLPGELAKHAVSEGTKAVTK 360
L+ + + +A +
Sbjct: 67 LMVEGVEDYDGELFGRATVR 86
Score = 64.8 bits (158), Expect = 2e-13
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 49 SKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 108
+ G F + R+L++ ER + A ++ E+ E A A ++
Sbjct: 69 VEGVEDYDGELFGRATVRRILKRAG-IERASSDAVDLYNKLICRATEELGEKAAEYADED 127
Query: 109 KKTRIIPRHLQLAIRN 124
+ + ++ AI
Sbjct: 128 GRKTVQGEDVEKAITY 143
Score = 56.3 bits (136), Expect = 2e-10
Identities = 13/65 (20%), Positives = 25/65 (38%)
Query: 59 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 118
+ P I R+ R+G R+ A + + +A V A + + K ++ HL
Sbjct: 1 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHL 60
Query: 119 QLAIR 123
+
Sbjct: 61 KALAD 65
Score = 40.5 bits (95), Expect = 6e-05
Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Query: 229 LGASFSESLSSLTTAAGKSSGKA--VKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLK 286
+ + + S+ A+GK + +K D + + + + ++LK
Sbjct: 35 MAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVEDYDGELFGRAT----VRRILK 90
Query: 287 QVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP--G 344
+ + SS A+ + N + E + +++ A + R T+ +++ A+ +P G
Sbjct: 91 RAGIER-ASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMPKGG 149
Query: 345 EL 346
EL
Sbjct: 150 EL 151
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma
(Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 80.7 bits (199), Expect = 8e-20
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 61 PVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 120
P+ RI ++++ + + A APV A + E+ A DNK+ + + +
Sbjct: 2 PLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAM 61
Query: 121 AIRNDEELNKLLSGV 135
AI ++ + L+ V
Sbjct: 62 AITKFDQFDFLIDIV 76
Score = 31.4 bits (71), Expect = 0.027
Identities = 11/59 (18%), Positives = 22/59 (37%)
Query: 281 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 339
I K++K +S++A + + + NKR T+ +I A+
Sbjct: 6 IKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT 64
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta
(Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 32.5 bits (74), Expect = 0.011
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 281 IYKVLKQVHPDTG-VSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 339
+ +++K P TG ++ A + V++ I +E+S H KR TI +I A+
Sbjct: 8 VARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 67
Score = 31.7 bits (72), Expect = 0.022
Identities = 7/73 (9%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Query: 58 LQFPVGRIHRLLRKG-NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 116
+ P+ + R+++ ++ A + + + + A K+ I
Sbjct: 1 IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGE 60
Query: 117 HLQLAIRNDEELN 129
+ A+ +
Sbjct: 61 DILFAMSTLGFDS 73
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 89
Score = 32.1 bits (73), Expect = 0.016
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 281 IYKVLKQVHPDTG-VSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 339
I +++K+ P++ VS +A + + + + + S+ LAH TIT+++I +
Sbjct: 5 IGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLT 64
Query: 340 LL 341
L
Sbjct: 65 EL 66
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus
fervidus, histone A [TaxId: 2180]}
Length = 68
Score = 31.3 bits (71), Expect = 0.021
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 281 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 340
I +++K VS A + + ++ E IA+E+ +LA + R TI + +I+ A ++
Sbjct: 9 IGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 67
Query: 341 L 341
Sbjct: 68 F 68
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus
horikoshii) [TaxId: 53953]}
Length = 66
Score = 30.1 bits (68), Expect = 0.064
Identities = 10/59 (16%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 281 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 339
+ +++++ VS +A ++ ++ + IA ++ A + R T+ +I+ A++
Sbjct: 8 VDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 65
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone
fold domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 30.0 bits (68), Expect = 0.066
Identities = 10/55 (18%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 285 LKQVHPDTGVSSKA----MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQ 335
+++V P+ + + I + F+ + + +LA + K ST+ +++Q
Sbjct: 13 VREVDPNEQLDEDVEEMLLQIADDFIESVVTA----ACQLARHRKSSTLEVKDVQ 63
>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 327
Score = 32.7 bits (74), Expect = 0.068
Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 6/146 (4%)
Query: 184 EHLENATG-LLVDEPGDTLDSTSTRQTTDGGLGDSLDVVTEYFPVPLGASFSESLSSLTT 242
HL G +L+D+P LD +T + L + + + L A +
Sbjct: 105 RHLRAILGPILLDQP---LDGVTTSLPSPEQLKGKILLKGKKLGGLLPAGGENGSEATDV 161
Query: 243 AAGKSSGKAVKKAGKAQ-KNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSI 301
+ + + +A ++Q ++ K DK K IY V G S +A
Sbjct: 162 SDEVEAAEMEDEAVRSQVQHKPKEDKLKLVPELSDMIIYCKSVHFGGFSSPGTSGQAFYE 221
Query: 302 MNSFVNDIFERIAAESSR-LAHYNKR 326
M SF R+ ES +N
Sbjct: 222 MASFSESRALRLLQESGNGFVRHNVS 247
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 82
Score = 27.4 bits (61), Expect = 0.66
Identities = 7/46 (15%), Positives = 19/46 (41%)
Query: 294 VSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 339
+S + E + ++ + KR T+T+ ++ A++
Sbjct: 27 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 72
>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM,
C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 75
Score = 26.2 bits (58), Expect = 1.9
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 88 AVMEYLAAEVLELAGNAARDNKKTRIIP 115
++E A +V+ + A + + R++P
Sbjct: 24 HLLETGANDVMVVKPCAGSLDDRERLLP 51
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock
protein F84.1) {Escherichia coli [TaxId: 562]}
Length = 139
Score = 27.0 bits (59), Expect = 2.1
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 94 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 127
L A + A + I P HL A+ N E
Sbjct: 7 FQLALADAQSLALGHDNQFIEPLHLMSALLNQEG 40
>d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium
[TaxId: 1352]}
Length = 307
Score = 26.5 bits (57), Expect = 5.7
Identities = 9/47 (19%), Positives = 14/47 (29%)
Query: 122 IRNDEELNKLLSGVTIAQGGVLPNIQAGAALTFERVDDVHGGDGLSL 168
EL + A G +LP I+A + + L
Sbjct: 247 NVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITSLEN 293
>d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and
4 {Bacillus stearothermophilus [TaxId: 1422]}
Length = 99
Score = 25.1 bits (55), Expect = 6.7
Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 7/63 (11%)
Query: 26 GAVPIPQIYTMSGRGK-------GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERV 78
G + Q + +S G GK SK R R G+ G I L R + V
Sbjct: 7 GQAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREV 66
Query: 79 GAG 81
G
Sbjct: 67 AQG 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.130 0.356
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,213,975
Number of extensions: 54833
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 34
Length of query: 365
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 278
Effective length of database: 1,213,086
Effective search space: 337237908
Effective search space used: 337237908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.2 bits)