BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3832
(357 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AP3|A Chain A, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap
pdb|3AP3|B Chain B, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap
pdb|3AP3|C Chain C, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap
pdb|3AP3|D Chain D, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap
Length = 355
Score = 234 bits (598), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 121/211 (57%), Positives = 148/211 (70%), Gaps = 9/211 (4%)
Query: 99 IVSKDAHVYRYDRFMPLIFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQHW 158
+V + VYRY + MPLIF+GGVPRSGTTLMRAMLDAHP+VRCG+ETRIIPR+L MRQ W
Sbjct: 32 MVGTNHVVYRYGKAMPLIFVGGVPRSGTTLMRAMLDAHPEVRCGEETRIIPRVLAMRQAW 91
Query: 159 IRSQKECQVYLISCTCQVYLIVINAAIAAFCLEVIARHGEPAERLCNKDPLTLKSADYLS 218
+S +E L V V++AA+ AF LEVIA+HGEPA LCNKDP TLKS+ YLS
Sbjct: 92 SKSGRE---KLRLDEAGVTDEVLDAAMQAFILEVIAKHGEPARVLCNKDPFTLKSSVYLS 148
Query: 219 EIFPFAKFIFMVRDGRATVHSIISRKVTITGFDLESYRQCLKKWNEAISIIFGD--EADR 276
+FP +KF+ MVRDGRA+VHS+I+RKVTI GFDL SYR CL KWN+AI +++ E +
Sbjct: 149 RLFPNSKFLLMVRDGRASVHSMITRKVTIAGFDLSSYRDCLTKWNKAIEVMYAQCMEVGK 208
Query: 277 TKLCGVPKPVCLCSKVSEPDDACKSIANALG 307
K PV V P + K I + LG
Sbjct: 209 EKCL----PVYYEQLVLHPRRSLKLILDFLG 235
>pdb|3AP1|A Chain A, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap And C4 Peptide
pdb|3AP1|B Chain B, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap And C4 Peptide
pdb|3AP2|A Chain A, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap,C4 Peptide, And
Phosphate Ion
pdb|3AP2|B Chain B, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap,C4 Peptide, And
Phosphate Ion
Length = 337
Score = 232 bits (592), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/206 (58%), Positives = 146/206 (70%), Gaps = 10/206 (4%)
Query: 105 HV-YRYDRFMPLIFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQHWIRSQK 163
HV YRY + MPLIF+GGVPRSGTTLMRAMLDAHP+VRCG+ETRIIPR+L MRQ W +S +
Sbjct: 37 HVEYRYGKAMPLIFVGGVPRSGTTLMRAMLDAHPEVRCGEETRIIPRVLAMRQAWSKSGR 96
Query: 164 ECQVYLISCTCQVYLIVINAAIAAFCLEVIARHGEPAERLCNKDPLTLKSADYLSEIFPF 223
E L V V++AA+ AF LEVIA+HGEPA LCNKDP TLKS+ YLS +FP
Sbjct: 97 E---KLRLDEAGVTDEVLDAAMQAFILEVIAKHGEPARVLCNKDPFTLKSSVYLSRLFPN 153
Query: 224 AKFIFMVRDGRATVHSIISRKVTITGFDLESYRQCLKKWNEAISIIFGD--EADRTKLCG 281
+KF+ MVRDGRA+VHS+I+RKVTI GFDL SYR CL KWN+AI +++ E + K
Sbjct: 154 SKFLLMVRDGRASVHSMITRKVTIAGFDLSSYRDCLTKWNKAIEVMYAQCMEVGKEKCL- 212
Query: 282 VPKPVCLCSKVSEPDDACKSIANALG 307
PV V P + K I + LG
Sbjct: 213 ---PVYYEQLVLHPRRSLKLILDFLG 235
>pdb|4GOX|A Chain A, Sulfotransferase Domain From The Synechococcus Pcc 7002
Olefin Synthase
Length = 313
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 114 PLIFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIP 149
P+ FI PRSG+TL+R ML HP + E ++P
Sbjct: 25 PIAFILSSPRSGSTLLRVMLAGHPGLYSPPELHLLP 60
>pdb|4GBM|A Chain A, Sulfotransferase Domain From The Curacin Biosynthetic
Pathway
Length = 323
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 78/194 (40%), Gaps = 25/194 (12%)
Query: 90 VEFFVFKTYIVSKDAHVYRYDRFMP-LIFIGGVPRSGTTLMRAMLDAHPDVRCGQETRII 148
+E F K+ A +P +IFI PRSG+TL+R ML H + E ++
Sbjct: 8 LEIFATKSSPSGNSARPASVSSRLPGIIFILSSPRSGSTLLRVMLAGHSSLFSPPELHLL 67
Query: 149 P-RILQMRQHWIR--------SQKECQVYLISCTCQVYLIVINAAIAAFCLEVIARHGEP 199
P ++ RQ + + +V + T LI + + L + +G
Sbjct: 68 PFNTMKERQEQLNLSYLGEGLQKTFMEVKNLDATASQALI---KDLESQNLSIQQVYGML 124
Query: 200 AERLCNKDPLTLKSADYLSE---------IFPFAKFIFMVRDGRATVHSIIS-RKVTITG 249
E + + L KS Y E +F +K+I++VR + + S + R + G
Sbjct: 125 QENIAPRL-LVDKSPTYAMEPTILERGEALFANSKYIYLVRHPYSVIESFVRMRMQKLVG 183
Query: 250 FDLES-YRQCLKKW 262
E+ YR + W
Sbjct: 184 LGEENPYRVAEQVW 197
>pdb|3Q2K|A Chain A, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|B Chain B, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|C Chain C, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|D Chain D, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|E Chain E, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|F Chain F, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|G Chain G, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|H Chain H, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|I Chain I, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|J Chain J, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|K Chain K, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|L Chain L, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|M Chain M, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|N Chain N, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|O Chain O, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|P Chain P, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
Length = 370
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 192 VIARHGEPAE--RLCNKDPLTLKSADYLSEIFPFAKFIFMVRDGRA 235
IA+HG+ AE +C+ +P L++A+ + PF+ M+ G A
Sbjct: 48 AIAQHGDRAELVEICDTNPEALQAAEAATGARPFSSLSDMLAQGNA 93
>pdb|4EKU|A Chain A, Crystal Structure Of Ferm Domain Of Proline-Rich Tyrosine
Kinase 2
Length = 392
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 246 TITGF---DLESYR-QCLKKWNEAISIIFGDEADRTKLCGVPKPVCLCS 290
T+ GF D E+YR + ++ WN + ++ G + R KP CL
Sbjct: 236 TLAGFANIDQETYRCELIQGWNITVDLVIGPKGIRQLTSQDAKPTCLAE 284
>pdb|1T8U|A Chain A, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap And Tetrasaccharide Substrate
pdb|1T8U|B Chain B, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap And Tetrasaccharide Substrate
Length = 272
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 113 MPLIFIGGVPRSGTTLMRAMLDAHPDVRC-GQETRIIPRILQMRQHWIR 160
+P I GV + GT + L HPDVR G E R W R
Sbjct: 18 LPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFDRSYDKGLAWYR 66
>pdb|1T8T|A Chain A, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap
pdb|1T8T|B Chain B, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap
Length = 271
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 113 MPLIFIGGVPRSGTTLMRAMLDAHPDVRC-GQETRIIPRILQMRQHWIR 160
+P I GV + GT + L HPDVR G E R W R
Sbjct: 17 LPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFDRSYDKGLAWYR 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,455,231
Number of Sequences: 62578
Number of extensions: 363209
Number of successful extensions: 884
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 878
Number of HSP's gapped (non-prelim): 8
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)