Query psy3832
Match_columns 357
No_of_seqs 181 out of 1449
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 18:29:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3832.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3832hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3988|consensus 100.0 5.9E-49 1.3E-53 362.1 17.0 227 102-336 59-287 (378)
2 PF00685 Sulfotransfer_1: Sulf 99.8 4E-19 8.6E-24 165.0 7.7 178 114-312 2-200 (267)
3 PF13469 Sulfotransfer_3: Sulf 99.7 2.3E-17 5.1E-22 146.0 10.8 179 114-312 1-214 (215)
4 KOG3704|consensus 99.7 7E-17 1.5E-21 149.3 10.0 162 107-311 101-290 (360)
5 KOG1584|consensus 99.5 1.8E-14 3.9E-19 136.6 7.6 109 222-336 123-245 (297)
6 PLN02164 sulfotransferase 99.5 7.1E-14 1.5E-18 137.0 9.2 108 200-313 144-264 (346)
7 PF09037 Sulphotransf: Stf0 su 99.4 3.4E-12 7.3E-17 119.8 14.2 180 116-312 2-219 (245)
8 COG4424 Uncharacterized protei 98.7 3E-07 6.5E-12 82.6 12.8 177 113-313 5-219 (250)
9 KOG3703|consensus 98.7 1.2E-07 2.5E-12 95.9 10.9 158 112-311 594-792 (873)
10 COG3551 Uncharacterized protei 98.5 2.4E-06 5.2E-11 81.0 12.8 103 199-313 106-212 (402)
11 PRK13808 adenylate kinase; Pro 90.9 17 0.00038 35.8 16.9 176 116-307 3-192 (333)
12 PRK14527 adenylate kinase; Pro 89.0 16 0.00034 32.4 18.7 179 112-307 5-191 (191)
13 PF06990 Gal-3-0_sulfotr: Gala 88.4 1.2 2.6E-05 45.0 6.8 32 213-244 137-169 (402)
14 TIGR01359 UMP_CMP_kin_fam UMP- 87.2 19 0.00042 31.3 18.0 175 115-306 1-182 (183)
15 PRK00279 adk adenylate kinase; 85.9 27 0.00058 31.6 16.6 175 116-307 3-213 (215)
16 PRK02496 adk adenylate kinase; 83.0 31 0.00068 30.1 15.8 173 116-306 4-182 (184)
17 TIGR01351 adk adenylate kinase 81.8 39 0.00084 30.4 17.8 174 116-306 2-209 (210)
18 PRK14526 adenylate kinase; Pro 80.4 46 0.001 30.4 16.7 175 116-308 3-209 (211)
19 PRK13949 shikimate kinase; Pro 80.4 39 0.00085 29.5 14.4 25 115-139 3-27 (169)
20 TIGR01360 aden_kin_iso1 adenyl 79.1 42 0.0009 29.1 16.3 26 112-137 2-27 (188)
21 PRK14532 adenylate kinase; Pro 78.9 44 0.00096 29.2 17.0 175 116-307 3-186 (188)
22 cd01428 ADK Adenylate kinase ( 77.8 47 0.001 28.9 14.6 118 116-242 2-123 (194)
23 PRK14528 adenylate kinase; Pro 70.6 77 0.0017 28.1 16.8 176 114-306 2-186 (186)
24 PF08257 Sulfakinin: Sulfakini 65.7 2.5 5.3E-05 19.2 0.3 8 43-50 1-8 (9)
25 PLN02200 adenylate kinase fami 61.0 1.4E+02 0.003 27.6 17.5 177 114-310 44-226 (234)
26 PF13207 AAA_17: AAA domain; P 56.3 11 0.00024 30.3 2.8 23 115-137 1-23 (121)
27 PRK14531 adenylate kinase; Pro 50.2 1.7E+02 0.0038 25.5 17.7 173 115-306 4-182 (183)
28 PF12273 RCR: Chitin synthesis 48.4 11 0.00023 31.8 1.6 16 56-71 2-17 (130)
29 PF13521 AAA_28: AAA domain; P 47.9 15 0.00032 31.5 2.5 29 116-145 2-30 (163)
30 PLN02459 probable adenylate ki 44.5 2.9E+02 0.0062 26.3 17.5 179 116-312 32-255 (261)
31 COG1102 Cmk Cytidylate kinase 43.3 22 0.00048 31.7 2.8 36 116-151 3-38 (179)
32 PF03266 NTPase_1: NTPase; In 42.0 24 0.00051 31.1 2.8 21 116-136 2-23 (168)
33 PRK14529 adenylate kinase; Pro 41.2 1.8E+02 0.0039 26.9 8.7 116 116-242 3-124 (223)
34 PF08433 KTI12: Chromatin asso 41.0 20 0.00044 34.2 2.4 24 113-136 1-24 (270)
35 PTZ00088 adenylate kinase 1; P 40.7 3E+02 0.0065 25.4 11.0 116 116-240 9-126 (229)
36 PLN02674 adenylate kinase 40.5 3.2E+02 0.0069 25.7 17.1 174 114-306 32-243 (244)
37 PRK08118 topology modulation p 38.9 31 0.00067 30.2 3.1 26 114-139 2-27 (167)
38 cd01862 Rab7 Rab7 subfamily. 38.3 25 0.00055 29.6 2.4 20 116-135 3-23 (172)
39 PRK13947 shikimate kinase; Pro 37.3 34 0.00075 29.3 3.1 24 115-138 3-26 (171)
40 PF01118 Semialdhyde_dh: Semia 36.9 28 0.0006 28.6 2.3 26 116-142 2-28 (121)
41 PF02492 cobW: CobW/HypB/UreG, 36.1 37 0.00081 29.8 3.2 25 114-138 1-27 (178)
42 PF13150 DUF3989: Protein of u 34.8 12 0.00027 29.4 -0.1 34 40-73 13-46 (85)
43 PF00071 Ras: Ras family; Int 34.8 34 0.00074 28.6 2.7 20 116-135 2-22 (162)
44 PRK14737 gmk guanylate kinase; 34.0 43 0.00092 29.9 3.2 39 201-242 96-135 (186)
45 PRK00131 aroK shikimate kinase 33.5 45 0.00097 28.3 3.2 27 113-139 4-30 (175)
46 PRK00625 shikimate kinase; Pro 32.8 38 0.00082 30.0 2.7 24 115-138 2-25 (173)
47 cd01887 IF2_eIF5B IF2/eIF5B (i 32.8 38 0.00083 28.3 2.6 22 114-135 1-23 (168)
48 KOG3062|consensus 31.9 33 0.00071 32.3 2.1 24 113-136 1-24 (281)
49 cd00154 Rab Rab family. Rab G 31.8 47 0.001 27.0 3.0 21 116-136 3-24 (159)
50 PRK03839 putative kinase; Prov 31.7 42 0.00091 29.2 2.8 25 115-139 2-26 (180)
51 COG4088 Predicted nucleotide k 31.5 41 0.00088 31.4 2.6 23 113-135 1-23 (261)
52 PRK03731 aroL shikimate kinase 31.4 45 0.00097 28.7 2.9 26 114-139 3-28 (171)
53 PRK14021 bifunctional shikimat 30.9 51 0.0011 34.7 3.7 29 110-138 3-31 (542)
54 PF00625 Guanylate_kin: Guanyl 30.8 62 0.0013 28.4 3.7 28 113-140 2-30 (183)
55 TIGR03795 chp_BMA0021 conserve 30.8 28 0.00061 28.9 1.4 67 288-357 31-110 (114)
56 PF03567 Sulfotransfer_2: Sulf 30.7 42 0.00092 30.1 2.7 25 114-138 9-33 (253)
57 cd04113 Rab4 Rab4 subfamily. 30.4 44 0.00096 27.9 2.6 20 116-135 3-23 (161)
58 cd01131 PilT Pilus retraction 29.6 47 0.001 29.7 2.8 23 115-137 3-26 (198)
59 PF00406 ADK: Adenylate kinase 29.5 3.3E+02 0.0072 22.7 9.1 113 118-242 1-121 (151)
60 cd01130 VirB11-like_ATPase Typ 29.4 58 0.0013 28.7 3.3 25 113-137 25-50 (186)
61 PHA02575 1 deoxynucleoside mon 28.9 51 0.0011 30.8 2.9 24 115-138 2-25 (227)
62 PF09125 COX2-transmemb: Cytoc 28.6 66 0.0014 21.2 2.5 19 56-74 18-36 (38)
63 PF13238 AAA_18: AAA domain; P 28.1 46 0.001 26.5 2.3 22 116-137 1-22 (129)
64 KOG2130|consensus 28.0 30 0.00065 33.9 1.2 13 116-128 182-194 (407)
65 smart00173 RAS Ras subfamily o 28.0 53 0.0012 27.4 2.7 20 116-135 3-23 (164)
66 cd02019 NK Nucleoside/nucleoti 27.9 56 0.0012 23.9 2.5 30 115-144 1-33 (69)
67 cd01673 dNK Deoxyribonucleosid 27.8 64 0.0014 28.3 3.3 32 115-146 1-32 (193)
68 TIGR02782 TrbB_P P-type conjug 26.9 54 0.0012 31.7 2.8 26 113-138 132-158 (299)
69 TIGR03598 GTPase_YsxC ribosome 26.6 61 0.0013 28.0 2.9 25 111-135 16-41 (179)
70 PF07172 GRP: Glycine rich pro 26.6 39 0.00084 27.1 1.5 14 53-66 3-16 (95)
71 PRK06620 hypothetical protein; 26.0 74 0.0016 29.1 3.4 30 114-143 45-74 (214)
72 PRK06217 hypothetical protein; 25.9 66 0.0014 28.2 3.0 24 115-138 3-26 (183)
73 cd01895 EngA2 EngA2 subfamily. 25.7 56 0.0012 27.1 2.4 21 115-135 4-25 (174)
74 smart00382 AAA ATPases associa 25.6 82 0.0018 24.6 3.3 23 114-136 3-25 (148)
75 PRK05800 cobU adenosylcobinami 25.6 66 0.0014 28.3 2.9 22 115-136 3-24 (170)
76 PF00437 T2SE: Type II/IV secr 25.0 57 0.0012 30.5 2.5 27 113-139 127-154 (270)
77 PRK13851 type IV secretion sys 24.9 65 0.0014 31.9 3.0 27 112-138 161-188 (344)
78 PRK13900 type IV secretion sys 24.3 73 0.0016 31.3 3.3 27 112-138 159-186 (332)
79 cd04135 Tc10 TC10 subfamily. 24.0 69 0.0015 27.1 2.7 20 116-135 3-23 (174)
80 cd04119 RJL RJL (RabJ-Like) su 24.0 68 0.0015 26.6 2.6 20 116-135 3-23 (168)
81 PRK13948 shikimate kinase; Pro 23.7 84 0.0018 28.0 3.3 27 112-138 9-35 (182)
82 PRK09087 hypothetical protein; 22.9 86 0.0019 28.9 3.3 27 113-139 44-70 (226)
83 cd00009 AAA The AAA+ (ATPases 22.7 88 0.0019 24.7 3.0 25 112-136 18-42 (151)
84 KOG3347|consensus 22.7 78 0.0017 28.0 2.7 29 111-139 5-33 (176)
85 cd01867 Rab8_Rab10_Rab13_like 22.4 79 0.0017 26.7 2.8 20 116-135 6-26 (167)
86 COG1084 Predicted GTPase [Gene 22.3 1E+02 0.0022 30.5 3.7 34 110-143 165-199 (346)
87 PRK13894 conjugal transfer ATP 22.2 81 0.0017 30.9 3.1 24 112-135 147-171 (319)
88 TIGR02788 VirB11 P-type DNA tr 22.0 83 0.0018 30.3 3.1 27 112-138 143-170 (308)
89 cd02021 GntK Gluconate kinase 21.9 96 0.0021 25.9 3.2 26 115-140 1-26 (150)
90 COG0563 Adk Adenylate kinase a 21.9 3.3E+02 0.0072 24.1 6.7 21 116-136 3-23 (178)
91 cd00544 CobU Adenosylcobinamid 21.9 86 0.0019 27.6 2.9 22 115-136 1-22 (169)
92 PF13173 AAA_14: AAA domain 21.8 94 0.002 25.4 3.0 25 112-136 1-26 (128)
93 PRK13946 shikimate kinase; Pro 21.7 86 0.0019 27.6 2.9 24 115-138 12-35 (184)
94 cd02028 UMPK_like Uridine mono 21.4 90 0.002 27.5 3.0 22 115-136 1-22 (179)
95 TIGR00073 hypB hydrogenase acc 21.0 63 0.0014 29.0 1.9 29 107-135 16-45 (207)
96 PHA02831 EEV host range protei 20.6 76 0.0017 30.4 2.4 30 50-81 225-260 (268)
97 PRK12339 2-phosphoglycerate ki 20.5 95 0.0021 28.0 3.0 25 115-139 5-29 (197)
98 PRK01184 hypothetical protein; 20.5 1E+02 0.0022 26.7 3.2 23 114-136 2-24 (184)
99 PHA03105 EEV glycoprotein; Pro 20.4 67 0.0015 28.3 1.8 30 52-81 2-31 (188)
100 cd04136 Rap_like Rap-like subf 20.3 93 0.002 25.8 2.7 19 116-134 4-23 (163)
101 PRK12338 hypothetical protein; 20.2 1.1E+02 0.0024 30.1 3.5 37 115-151 6-42 (319)
No 1
>KOG3988|consensus
Probab=100.00 E-value=5.9e-49 Score=362.13 Aligned_cols=227 Identities=55% Similarity=0.857 Sum_probs=215.3
Q ss_pred ccCccCCcCCCCCcEEEEcCCCchHHHHHHHHHhCCCCccCCCCCchHHHHHhhHhhhhhhhhhhhhhhhhccCCCHHHH
Q psy3832 102 KDAHVYRYDRFMPLIFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQHWIRSQKECQVYLISCTCQVYLIVI 181 (357)
Q Consensus 102 ~~~~~~~~~~~~p~IfIvG~pRSGTTlL~~lL~~hP~v~~~~E~~~l~~~~~~~~~w~~~~~e~~~~L~~~~~~~~~~~l 181 (357)
..|..|+|.+..|+|||.|.|||||||+++||++||+|+|++|+.++|+++..+..|.++.++++ +|+ ++|++.+++
T Consensus 59 ~~~~~~~y~~~mplIFiGGVPRSGTTLMRAmLDAHPdVRCGeETrviPriL~lr~~W~ks~ke~~-rl~--eaGvT~EV~ 135 (378)
T KOG3988|consen 59 SVRSDYGYNRTMPLIFIGGVPRSGTTLMRAMLDAHPDVRCGEETRVIPRILALRSGWSKSEKEWL-RLQ--EAGVTDEVL 135 (378)
T ss_pred hhhhhhhhcccCceEEEcCCCCCchHHHHHHHhcCCCcccCccceehHHHHHHHHHhhhhhHhHh-hhh--hccchHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999988887 888 899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEeCCCCcccHHHHHHHCCCCeEEEEEeChhHHHHHHhhcccccCCCChHHHHHHHHH
Q psy3832 182 NAAIAAFCLEVIARHGEPAERLCNKDPLTLKSADYLSEIFPFAKFIFMVRDGRATVHSIISRKVTITGFDLESYRQCLKK 261 (357)
Q Consensus 182 ~~~~~~~~l~~i~~~~~~~~~~~dK~P~~~~~l~~i~~~FP~aK~I~lvRdP~dv~~S~~~~~~~~~gfdl~~~~~~~~~ 261 (357)
++++.+|+++++.++|++++++++|+|..+..+.++.++||||||++++||+|++++|+..++.++.|||+++|++|+..
T Consensus 136 d~AisaFilEIiakHge~AprLCNKDPftlk~~~yl~rLfPNAKfllMvRDgRAtVhSmIsRKVtIaGfdlssyr~c~tk 215 (378)
T KOG3988|consen 136 DSAISAFILEIIAKHGEPAPRLCNKDPFTLKSLVYLSRLFPNAKFLLMVRDGRATVHSMISRKVTIAGFDLSSYRQCMTK 215 (378)
T ss_pred HHHHHHHHHHHHHhcCCcccccccCCchHHHHHHHHHHHCCCceEEEEEecchHHHHHHHhccceeccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhh-c-ccCCCccEEEecchhccCHHHHHHHHHHHhCCCCCccccccchhhhcCCccccccccccc
Q psy3832 262 WNEAISIIFGDEAD-R-TKLCGVPKPVCLCSKVSEPDDACKSIANALGATNPKCSELQVCEVTYKGKQVSISNNTVN 336 (357)
Q Consensus 262 W~~~~~~~~~~~~~-~-dr~~~~il~V~YEDLv~dP~~~l~~I~~FLGL~~~~~~~~~~~e~~~~~~~~~~s~~~~~ 336 (357)
|+++++.++.++.. + ++ | +.|.||+|+.+|++++++|.+||++||++.+ +|+++..-+.+++++|+..-+
T Consensus 216 WN~aie~M~~QC~~vg~~~-C---l~VyYEqLVlhPe~~mr~Il~FLdipw~d~v-LhHedlIgk~~gVsLskvErS 287 (378)
T KOG3988|consen 216 WNQAIEVMYFQCMEVGKKK-C---LKVYYEQLVLHPEEWMRRILKFLDIPWSDAV-LHHEDLIGKPGGVSLSKVERS 287 (378)
T ss_pred HHHHHHHHHHHHHhccccc-h---hHHHHHHHHhCHHHHHHHHHHHhCCCcHHHH-HhHHHhcCCCCCCChhhhhcc
Confidence 99999999999987 3 45 8 9999999999999999999999999999886 688888888889999987543
No 2
>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase. These enzymes are responsible for the transfer of sulphate groups to specific compounds.; GO: 0008146 sulfotransferase activity; PDB: 3MGC_A 3MGB_A 3MG9_A 1G3M_B 1HY3_B 2QP4_A 3F3Y_C 1EFH_A 1OV4_A 1J99_A ....
Probab=99.77 E-value=4e-19 Score=164.99 Aligned_cols=178 Identities=24% Similarity=0.361 Sum_probs=95.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHhCCCCccCC---CCCchHHHHHhhHhhhhhhhhhh-hhhhhh-----ccCCCHHHHHHH
Q psy3832 114 PLIFIGGVPRSGTTLMRAMLDAHPDVRCGQ---ETRIIPRILQMRQHWIRSQKECQ-VYLISC-----TCQVYLIVINAA 184 (357)
Q Consensus 114 p~IfIvG~pRSGTTlL~~lL~~hP~v~~~~---E~~~l~~~~~~~~~w~~~~~e~~-~~L~~~-----~~~~~~~~l~~~ 184 (357)
|+|||+|+||||||||.++|++||++.... ++++... ... ..|........ ...... ........
T Consensus 2 ~~i~I~g~prSGTt~l~~lL~~h~~~~~~~~~~~~~~~~~-~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 75 (267)
T PF00685_consen 2 PPIFIVGAPRSGTTWLRELLNSHPDIFSFSPFKEPHFFNN-RDY-SPFLEWYRDFFPFRIKPQEHIPSFSHVESKI---- 75 (267)
T ss_dssp TSEEEEESTTSSHHHHHHHHHHHHTTTETHHHTSSHHTTT-HHH-STBTTHHHHTSHEEGTTTEEEGGCTTTETHH----
T ss_pred CCEEEECCCCCcHHHHHHHHHhCcccccccccccccccch-hhh-hhhhhhhhcccccccccccccccccccchhH----
Confidence 579999999999999999999999987762 2322111 000 00000000000 000000 00000000
Q ss_pred HHHHHHHHHHhcCCCCceEEEeCCCCcccHHHHHHHCCCCeEEEEEeChhHHHHHHhhcccccCCCC-----hHHH----
Q psy3832 185 IAAFCLEVIARHGEPAERLCNKDPLTLKSADYLSEIFPFAKFIFMVRDGRATVHSIISRKVTITGFD-----LESY---- 255 (357)
Q Consensus 185 ~~~~~l~~i~~~~~~~~~~~dK~P~~~~~l~~i~~~FP~aK~I~lvRdP~dv~~S~~~~~~~~~gfd-----l~~~---- 255 (357)
..+. .....+++ |++..+..+. ....+|++|+|+|+|||+|++.|.+++......+. .+.+
T Consensus 76 ------~~~~--~~~~~~~~-~~H~~~~~~~-~~~~~~~~KiI~ivRdP~d~~~S~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (267)
T PF00685_consen 76 ------VRLR--DLPSPRFI-KTHLPLDLLP-KKLLFPNAKIIYIVRDPRDVIVSRYKHSWRSNPFSDPGQRFEEFVDWF 145 (267)
T ss_dssp ------HHHH--CSCSSEEE-EE-S-GGGSH-HHHHHTTEEEEEEE--HHHHHHHHHHHHHHBTTSTTHHSHHHHHHHHH
T ss_pred ------HHHh--hccCchhh-hhcccccccc-ccccccccccceecccccchhHHHHHHHHhcccccccchhhhhhhhhh
Confidence 0011 22234444 3322222221 12347999999999999999999998765322111 1111
Q ss_pred ---HHHHHHHHHHHHHHHhhhhhcccCCCccEEEecchhccCHHHHHHHHHHHhCCCCCc
Q psy3832 256 ---RQCLKKWNEAISIIFGDEADRTKLCGVPKPVCLCSKVSEPDDACKSIANALGATNPK 312 (357)
Q Consensus 256 ---~~~~~~W~~~~~~~~~~~~~~dr~~~~il~V~YEDLv~dP~~~l~~I~~FLGL~~~~ 312 (357)
......|...+..++... .+ +++++|+||||+.||.+++++|++|||++.++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~i~YEdl~~dp~~~l~~I~~FLgl~~~~ 200 (267)
T PF00685_consen 146 LQPRLLYGSWADHLKSWLSSF---DR--DNVLIIRYEDLVADPEKELKRICDFLGLPFSD 200 (267)
T ss_dssp HTTHSTTSCHHHHHHHHHHHT---TT--STEEEEEHHHHHHSHHHHHHHHHHHTTSS--H
T ss_pred hccccccccccccccchhhhh---cc--chhhhhcchhhhhhhhHHHHHHHHHHhhccch
Confidence 111224444444444421 22 55699999999999999999999999999773
No 3
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=99.72 E-value=2.3e-17 Score=146.02 Aligned_cols=179 Identities=20% Similarity=0.167 Sum_probs=87.1
Q ss_pred CcEEEEcCCCchHHHHH-HHHHhCCCCccCCCCCch-----HHHHHhh--------Hhhhhhhhhhhhhhh-hhccCCCH
Q psy3832 114 PLIFIGGVPRSGTTLMR-AMLDAHPDVRCGQETRII-----PRILQMR--------QHWIRSQKECQVYLI-SCTCQVYL 178 (357)
Q Consensus 114 p~IfIvG~pRSGTTlL~-~lL~~hP~v~~~~E~~~l-----~~~~~~~--------~~w~~~~~e~~~~L~-~~~~~~~~ 178 (357)
++|||+|+||||||+|. .+|++||++....|+... ....... ..+.... ....... ........
T Consensus 1 ~pvfI~G~~RSGTTlL~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 79 (215)
T PF13469_consen 1 RPVFIVGMPRSGTTLLSRRLLSQHPQIWGVHEPQMPPHRSPPRGIPEEEDFSRFLRAAMPAAH-QRWDARPRYGRARDRA 79 (215)
T ss_dssp SCEEEECSTTSSHHHHH-HHHCTSTTEECGCHHCCHCGCCCHHHHHHHHHHHHHHHHHHHHHH-HHTTTSSCSHCTTCCH
T ss_pred CeEEEECCCCCcHHHHHHHHHccCCCeeecCCccccccccccccccchhhhHHHHHHHHHhcc-ccccchhhcchhhHHH
Confidence 47999999999999999 999999999888876421 1111100 0000000 0000000 00000000
Q ss_pred HH----------HHHHHHHHHHHHHHh--cCCCCceEEEeCCCCcccHHHHHHHCCCCeEEEEEeChhHHHHHHhhcccc
Q psy3832 179 IV----------INAAIAAFCLEVIAR--HGEPAERLCNKDPLTLKSADYLSEIFPFAKFIFMVRDGRATVHSIISRKVT 246 (357)
Q Consensus 179 ~~----------l~~~~~~~~l~~i~~--~~~~~~~~~dK~P~~~~~l~~i~~~FP~aK~I~lvRdP~dv~~S~~~~~~~ 246 (357)
.. ............... .......++.|+|.+. +||+ |||+++|||++++.|+.+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~--------~~p~-~~V~i~RdP~~~~~S~~~~~~~ 150 (215)
T PF13469_consen 80 YFARDFARERARSARRRSRRKRLLIKKIASPLGRPPWLLKSPRHL--------LFPD-RFVHIVRDPRDVAASWLRMFLR 150 (215)
T ss_dssp HCHHHCGTGGCGHHHHHHHHHHHHHHTCCSCCS-SEEEEESCGHH--------HSTT-EEEEEE--HHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhhhccccceeeecChHHh--------hCCC-eEEEEEeChHHHHhhHHHHhhh
Confidence 00 000000000111111 1122457889999876 9999 9999999999999998776531
Q ss_pred ---cCCCCh-HHHHHHHHHHHHHHHHHHhhhhhcccCCCccEEEec----chhccCHHHHHHHHHHHhCCCCCc
Q psy3832 247 ---ITGFDL-ESYRQCLKKWNEAISIIFGDEADRTKLCGVPKPVCL----CSKVSEPDDACKSIANALGATNPK 312 (357)
Q Consensus 247 ---~~gfdl-~~~~~~~~~W~~~~~~~~~~~~~~dr~~~~il~V~Y----EDLv~dP~~~l~~I~~FLGL~~~~ 312 (357)
..+... .........+. ....... .+. +++.|+| |||++||++++++||+ + +++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~----~~~~~~~~~~yedl~~~p~~~l~~i~~-~-~~l~~ 214 (215)
T PF13469_consen 151 HLLRRSFYEDQWARWYWEWRR-ALRRWRD---YPH----RWLRVRYEWRYEDLVADPEATLRRICA-L-LELTR 214 (215)
T ss_dssp HHHCTCCCCCHHHHHHHHHHH-HHHHHHH---HHH----HHHHHHHHHEHHHHHHSHHHHHHHHHH-C-----H
T ss_pred hhhhcccchhhhHHhHHHHHH-HHHhhcc---cHH----HHHHHHhhcCHHHHHHCHHHHHHHHHH-h-hCCcC
Confidence 111111 10000000000 0000000 001 1144555 9999999999999999 7 88763
No 4
>KOG3704|consensus
Probab=99.69 E-value=7e-17 Score=149.26 Aligned_cols=162 Identities=22% Similarity=0.311 Sum_probs=127.2
Q ss_pred CCcCCCCCcEEEEcCCCchHHHHHHHHHhCCCCccCC-CCCchHHHHHhhHhhhhhhhhhhhhhhhhccCCCHHHHHHHH
Q psy3832 107 YRYDRFMPLIFIGGVPRSGTTLMRAMLDAHPDVRCGQ-ETRIIPRILQMRQHWIRSQKECQVYLISCTCQVYLIVINAAI 185 (357)
Q Consensus 107 ~~~~~~~p~IfIvG~pRSGTTlL~~lL~~hP~v~~~~-E~~~l~~~~~~~~~w~~~~~e~~~~L~~~~~~~~~~~l~~~~ 185 (357)
..-.+..|..+|+|.-++||.+|.++|..||+|++.+ |+||+++.+..+-.|.++. + |..+
T Consensus 101 ~~~~k~lPqalIigvkkggtRalle~l~lhpdVra~~~e~hffD~~y~~gl~wyr~~------M--------P~tl---- 162 (360)
T KOG3704|consen 101 SHGSKQLPQALIIGVKKGGTRALLEFLRLHPDVRAVGSEPHFFDRNYTRGLDWYRSQ------M--------PRTL---- 162 (360)
T ss_pred CcccccCChheEEeecccchHHHHHHHhhChhhhhhccCCccccccccccchhHHhc------C--------Cccc----
Confidence 3445677889999999999999999999999999875 9999987665555564421 1 2221
Q ss_pred HHHHHHHHHhcCCCCceEEEeCCCCccc---HHHHHHHCCCCeEEEEEeChhHHHHHHhhccccc---------------
Q psy3832 186 AAFCLEVIARHGEPAERLCNKDPLTLKS---ADYLSEIFPFAKFIFMVRDGRATVHSIISRKVTI--------------- 247 (357)
Q Consensus 186 ~~~~l~~i~~~~~~~~~~~dK~P~~~~~---l~~i~~~FP~aK~I~lvRdP~dv~~S~~~~~~~~--------------- 247 (357)
.+++.++|+|.++.. -..+..+-|+.|.|.+||||...+.|-+.+....
T Consensus 163 -------------~~qItmEKTPsYFvt~e~P~Rv~~M~pd~KLivvvR~PvtRaiSDyTQt~sk~~~~P~fe~lafkn~ 229 (360)
T KOG3704|consen 163 -------------DGQITMEKTPSYFVTREVPKRVYSMNPDTKLIVVVRDPVTRAISDYTQTLSKKPDIPTFEVLAFKNR 229 (360)
T ss_pred -------------CCceEEecCchhhcccccchHHHhcCCCceEEEEEcCchhhhHHHHHHHHhcCCCCCceeeeeeecC
Confidence 247889999998864 3467778899999999999999999999875431
Q ss_pred -CC-----CC---hHHHHHHHHHHHHHHHHHHhhhhhcccCCCccEEEecchhccCHHHHHHHHHHHhCCCCC
Q psy3832 248 -TG-----FD---LESYRQCLKKWNEAISIIFGDEADRTKLCGVPKPVCLCSKVSEPDDACKSIANALGATNP 311 (357)
Q Consensus 248 -~g-----fd---l~~~~~~~~~W~~~~~~~~~~~~~~dr~~~~il~V~YEDLv~dP~~~l~~I~~FLGL~~~ 311 (357)
.| |. ..-|...+++|.++++. .++++|+-|.|+.||..+++++.+||||...
T Consensus 230 ~~g~id~~w~ai~iglY~~Hle~WL~yFpL------------~q~lfVsGerli~dPa~E~~rVqdFLgLkr~ 290 (360)
T KOG3704|consen 230 TAGLIDTSWKAIRIGLYAVHLENWLRYFPL------------RQILFVSGERLISDPAGELGRVQDFLGLKRV 290 (360)
T ss_pred ccceeecchhhhhhhHHHHHHHHHHHhCch------------hheEEecCceeecCcHHHHHHHHHHhcccce
Confidence 01 11 23478888999988764 3449999999999999999999999999965
No 5
>KOG1584|consensus
Probab=99.52 E-value=1.8e-14 Score=136.57 Aligned_cols=109 Identities=15% Similarity=0.151 Sum_probs=67.5
Q ss_pred CCCeEEEEEeChhHHHHHHhhccccc--CCC--ChHHHHH-H-------HHHHHHHHHHHHhhhhhcccCCCccEEEecc
Q psy3832 222 PFAKFIFMVRDGRATVHSIISRKVTI--TGF--DLESYRQ-C-------LKKWNEAISIIFGDEADRTKLCGVPKPVCLC 289 (357)
Q Consensus 222 P~aK~I~lvRdP~dv~~S~~~~~~~~--~gf--dl~~~~~-~-------~~~W~~~~~~~~~~~~~~dr~~~~il~V~YE 289 (357)
+++|+||+.|||.|++.|++...... ... ..+.+.. . --.|.+ +..+++ ...+ .+|++++||
T Consensus 123 ~~cKvVYv~RNpKD~~VSy~hf~~~~~~~~~~~~~e~~fe~F~~G~~~~Gp~~dH-Vl~~W~-~~~~----~~VLFl~YE 196 (297)
T KOG1584|consen 123 SKCKVVYVCRNPKDVLVSYYHFNRMLKTQPGPGTFEEFFESFCNGVVPYGPWWDH-VLGYWE-LEDP----KNVLFLKYE 196 (297)
T ss_pred CCCcEEEEecCccceeeeHHHHHhhhccCCCCCcHHHHHHHHhCCcCCcCChHHH-HHHHHH-hcCC----CceEEEEHH
Confidence 48999999999999999999754321 111 1222111 0 112222 222233 1223 456999999
Q ss_pred hhccCHHHHHHHHHHHhCCCCC-ccccccchhhhcCCc-cccccccccc
Q psy3832 290 SKVSEPDDACKSIANALGATNP-KCSELQVCEVTYKGK-QVSISNNTVN 336 (357)
Q Consensus 290 DLv~dP~~~l~~I~~FLGL~~~-~~~~~~~~e~~~~~~-~~~~s~~~~~ 336 (357)
||.+||..++++|++|||.+++ +.++....+..+..- .-+++|.+.|
T Consensus 197 dmk~dp~~~ikrlaeFLg~~~~~Ee~~~~~~~~~~~~~~~n~l~nle~n 245 (297)
T KOG1584|consen 197 DMKADPKGEIKKLAEFLGCPFTKEEEDKGVVHLSFELCSLNPLSNLEVN 245 (297)
T ss_pred HhhhCHHHHHHHHHHHhCCCCCHHHHhhhhHHHHHHHHhhccccCceec
Confidence 9999999999999999999999 444444445444432 2334444444
No 6
>PLN02164 sulfotransferase
Probab=99.49 E-value=7.1e-14 Score=136.98 Aligned_cols=108 Identities=12% Similarity=0.032 Sum_probs=64.7
Q ss_pred CceEEEeCCCCcccHHHHHHHCCCCeEEEEEeChhHHHHHHhhccc--cc-CC--CChHHH-HHH------HHHHHHHHH
Q psy3832 200 AERLCNKDPLTLKSADYLSEIFPFAKFIFMVRDGRATVHSIISRKV--TI-TG--FDLESY-RQC------LKKWNEAIS 267 (357)
Q Consensus 200 ~~~~~dK~P~~~~~l~~i~~~FP~aK~I~lvRdP~dv~~S~~~~~~--~~-~g--fdl~~~-~~~------~~~W~~~~~ 267 (357)
.++++ |+...+..++.-. .-|++|+|+|+|||+|++.|++.... .. .+ .+.++. ... .-.|-.++.
T Consensus 144 ~PRli-kTHlp~~~lP~~i-~~~~~KiIyv~RnPkDv~VS~yhf~~~~~~~~~~~~s~ee~~e~f~~g~~~~G~y~dHv~ 221 (346)
T PLN02164 144 GNTLF-STHIPYGLLPDSV-VKSGCKMVYIWRDPKDTFISMWTFLHKERSQQGPLNSLEESFDMFCRGLSVYGPYLDHVL 221 (346)
T ss_pred CCCee-EecCChhhCcccc-ccCCceEEEEecCchhheeeHHHHHhhccccCCCCCCHHHHHHHHHcCCCCCCcHHHHHH
Confidence 34443 5544443333211 12799999999999999999985322 11 11 111111 100 011222223
Q ss_pred HHHhhhh-hcccCCCccEEEecchhccCHHHHHHHHHHHhCCCCCcc
Q psy3832 268 IIFGDEA-DRTKLCGVPKPVCLCSKVSEPDDACKSIANALGATNPKC 313 (357)
Q Consensus 268 ~~~~~~~-~~dr~~~~il~V~YEDLv~dP~~~l~~I~~FLGL~~~~~ 313 (357)
.+++... .+ .+|++|+||||..||..++++|++|||+++++.
T Consensus 222 ~yw~~~~~~p----~~VLfl~YEDmk~D~~~~v~ria~FLG~~~s~e 264 (346)
T PLN02164 222 GYWKAYQENP----DRILFLKYETMRADPLPYVKRLAEFMGYGFTAE 264 (346)
T ss_pred HHHHHhhcCC----ccEEEEEHHHHHHhHHHHHHHHHHHhCCCCchh
Confidence 3333221 23 345999999999999999999999999999853
No 7
>PF09037 Sulphotransf: Stf0 sulphotransferase; InterPro: IPR024628 Members of this family are essential for the biosynthesis of sulpholipid-1 in prokaryotes. They adopt a structure that belongs to the sulphotransferase superfamily, consisting of a single domain with a core four-stranded parallel beta-sheet flanked by alpha-helices []. ; PDB: 1TEX_B.
Probab=99.41 E-value=3.4e-12 Score=119.82 Aligned_cols=180 Identities=20% Similarity=0.212 Sum_probs=91.1
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCccCCCCCchHHHHHhhHhhhhhhhhhhhhhhhhccCCCHHHHHH-HHHHHHHHHHH
Q psy3832 116 IFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQHWIRSQKECQVYLISCTCQVYLIVINA-AIAAFCLEVIA 194 (357)
Q Consensus 116 IfIvG~pRSGTTlL~~lL~~hP~v~~~~E~~~l~~~~~~~~~w~~~~~e~~~~L~~~~~~~~~~~l~~-~~~~~~l~~i~ 194 (357)
.+|++.||||||||..+|++|+.+-.+.|..--+. ...|...- .+.. . +...+. ....|...+++
T Consensus 2 yii~~t~RSGStlL~~~L~~tg~~G~p~E~F~~~~----~~~w~~~~-----~~~~-~----~~~~~~~~~~~~~~~~~~ 67 (245)
T PF09037_consen 2 YIICSTQRSGSTLLCELLRATGVAGRPQEFFQSPQ----PREWFAGV-----GLPS-D----PGTPDKEDPDEWLDAALA 67 (245)
T ss_dssp EEEEE-TTSSHHHHHHHHHHCTSS-----TT--------HHHHTTT------------------------HHHHHHHHHH
T ss_pred eEEEeCCCCcHHHHHHHHHhCcCCCCchHhcCCcc----HHHHHhhc-----CCcc-c----ccccccccHHHHHHHHHH
Confidence 47899999999999999999998877777632222 12342210 0000 0 001111 12233333343
Q ss_pred hcCCCCceEEEeCCC-Cc----------------ccHHHHHHHCCCCeEEEEEe-ChhHHHHHHhhccccc----C--C-
Q psy3832 195 RHGEPAERLCNKDPL-TL----------------KSADYLSEIFPFAKFIFMVR-DGRATVHSIISRKVTI----T--G- 249 (357)
Q Consensus 195 ~~~~~~~~~~dK~P~-~~----------------~~l~~i~~~FP~aK~I~lvR-dP~dv~~S~~~~~~~~----~--g- 249 (357)
....+..+++.|.=. ++ ..+.+|..+||++++|||.| |-...+.|+.+...+. . +
T Consensus 68 ~~~t~ngv~G~KLm~~q~~~~~~~~~~l~~~~~~d~~~~i~~~~~~~~~I~L~R~d~l~QAvS~~~A~qtg~w~~~~~~~ 147 (245)
T PF09037_consen 68 RGRTPNGVFGFKLMWNQLPLLIRRLAHLYPGRSSDHLRFIEDLFGDVKFIHLRRRDLLRQAVSLWRARQTGVWHQHADGT 147 (245)
T ss_dssp HTB-TTS-EEEEEEGGGHHHHHHHHTTS-TT---SSHHHHHHHHTS-EEEEEE-S-HHHHHHHHHHHHHHS---------
T ss_pred hcCCCCCeEEEEecHhhhHHHHHHHhhhcccccccHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHHHHhCCCcccCCCCC
Confidence 333345677777432 11 12336788899999999998 9999999999865431 0 0
Q ss_pred ------------CChHHHHHHHHHHHHHHHHHHhhhhhcccCCCccEEEecchhccCHHHHHHHHHHHhCCCCCc
Q psy3832 250 ------------FDLESYRQCLKKWNEAISIIFGDEADRTKLCGVPKPVCLCSKVSEPDDACKSIANALGATNPK 312 (357)
Q Consensus 250 ------------fdl~~~~~~~~~W~~~~~~~~~~~~~~dr~~~~il~V~YEDLv~dP~~~l~~I~~FLGL~~~~ 312 (357)
|+...+.+++..-......+...... .. -..+.|.||||++||.+++.+|++|||++...
T Consensus 148 ~~~r~~~~~~~~yd~~~i~~~i~~i~~~~~~w~~~f~~-~~--i~pl~i~YEdL~~dp~~~~~~Vl~fLgv~~~~ 219 (245)
T PF09037_consen 148 RDERVSPPRKPRYDFEEIAHLIDRIEDQEAFWRNWFAR-HG--IEPLEITYEDLLADPQKTVARVLDFLGVDPPL 219 (245)
T ss_dssp --TT----------HHHHHHHHHHHHHHHHHHHHHHHH-TT-----EEEEHHHHHHHHHHHHHHHHHHTTS-GGG
T ss_pred ccccccccccceeCHHHHHHHHHHHHHHHHHHHHHHHH-cC--CCeeEEEHHHHHhCHHHHHHHHHHHhCCCCcc
Confidence 12222211111111111111111111 10 11278999999999999999999999998764
No 8
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.69 E-value=3e-07 Score=82.59 Aligned_cols=177 Identities=21% Similarity=0.259 Sum_probs=105.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHhCCCCccCCCCC-chHHHHHhhHhhhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHH
Q psy3832 113 MPLIFIGGVPRSGTTLMRAMLDAHPDVRCGQETR-IIPRILQMRQHWIRSQKECQVYLISCTCQVYLIVINAAIAAFCLE 191 (357)
Q Consensus 113 ~p~IfIvG~pRSGTTlL~~lL~~hP~v~~~~E~~-~l~~~~~~~~~w~~~~~e~~~~L~~~~~~~~~~~l~~~~~~~~l~ 191 (357)
..+.+|.+.||||||||.++|++-. +.+||+ |+.+ +....|..- .+.....+..... ...+|+..
T Consensus 5 fr~Ylilt~pRSGStlLckllaatG---~sG~p~sff~r--p~~sEWla~------~~~pld~g~pea~---~~va~f~a 70 (250)
T COG4424 5 FRPYLILTTPRSGSTLLCKLLAATG---CSGEPQSFFQR--PQPSEWLAQ------LLDPLDPGTPEAA---TPVAWFEA 70 (250)
T ss_pred ccceeEecCCCCcchHHHHHHHhcC---CCCCchhhhcC--CCHHHHHHh------hccccCCCCcccc---cHHHHHHH
Confidence 3468899999999999999999843 567884 3321 111234321 1111112221111 12344444
Q ss_pred HHHhcCCCCceEEEeCCCCcc---------------cHHHHHHHCCCCeEEEEEe-ChhHHHHHHhhccccc------CC
Q psy3832 192 VIARHGEPAERLCNKDPLTLK---------------SADYLSEIFPFAKFIFMVR-DGRATVHSIISRKVTI------TG 249 (357)
Q Consensus 192 ~i~~~~~~~~~~~dK~P~~~~---------------~l~~i~~~FP~aK~I~lvR-dP~dv~~S~~~~~~~~------~g 249 (357)
.+.+-..+...|+.|.-.+.. ..-.+...|-+.-|||+.| |-...+.|+.+...+. .|
T Consensus 71 ai~kgstpngvfGlkLmrn~d~l~q~lav~lp~~ssD~~r~e~afg~~lfvhl~R~dkv~QAvSl~rA~QTglwhahpdG 150 (250)
T COG4424 71 AITKGSTPNGVFGLKLMRNQDALLQQLAVQLPDRSSDGLRIEDAFGEPLFVHLHRPDKVSQAVSLWRAVQTGLWHAHPDG 150 (250)
T ss_pred HHHcCCCCCccchhhhccchHHHHHHHHHhCccccchHHHHHHHhCCeeEEEeecchHHHHHHHHHHHHHhcceeccCCC
Confidence 454433345566666544421 2234566777888999998 8999999999875431 12
Q ss_pred --------CChHHH-------HHHHHHHHHHHHHHHhhhhhcccCCCccEEEecchhccCHHHHHHHHHHHhCCCCCcc
Q psy3832 250 --------FDLESY-------RQCLKKWNEAISIIFGDEADRTKLCGVPKPVCLCSKVSEPDDACKSIANALGATNPKC 313 (357)
Q Consensus 250 --------fdl~~~-------~~~~~~W~~~~~~~~~~~~~~dr~~~~il~V~YEDLv~dP~~~l~~I~~FLGL~~~~~ 313 (357)
||.+.+ +.+-..|+..+.. +..+ . +.|-||.|-+||-..+..+|+.||++....
T Consensus 151 ~ap~s~p~Ydfe~Ia~~~~~lrdydaaWn~wfa~-----qGie--p---~riaYe~Lsadp~aava~~~ealgv~~p~a 219 (250)
T COG4424 151 PAPDSQPVYDFEAIAHIIRNLRDYDAAWNAWFAE-----QGIE--P---IRIAYEVLSADPTAAVASVLEALGVDPPLA 219 (250)
T ss_pred CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHH-----cCCc--H---HHHhHHHHccCcHHHHHHHHHHhCCCCCCC
Confidence 333222 2222334443331 1122 2 578899999999999999999999998743
No 9
>KOG3703|consensus
Probab=98.68 E-value=1.2e-07 Score=95.87 Aligned_cols=158 Identities=18% Similarity=0.270 Sum_probs=103.4
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHhCCCCccCC-------CCCchHH-HHHhhHhhhhhhhhhhhhhhhhccCCCHHHHHH
Q psy3832 112 FMPLIFIGGVPRSGTTLMRAMLDAHPDVRCGQ-------ETRIIPR-ILQMRQHWIRSQKECQVYLISCTCQVYLIVINA 183 (357)
Q Consensus 112 ~~p~IfIvG~pRSGTTlL~~lL~~hP~v~~~~-------E~~~l~~-~~~~~~~w~~~~~e~~~~L~~~~~~~~~~~l~~ 183 (357)
..|-+.|+|..++|||+|.-.|.-||.+.... |..|+.. -+-.+-.|
T Consensus 594 ~lPkfLiIGPQKTGtTAly~FLsmHp~i~sn~psp~tFEEvQFFng~NY~kGidW------------------------- 648 (873)
T KOG3703|consen 594 RLPKFLIIGPQKTGTTALYLFLSMHPSISSNTPSPETFEEVQFFNGNNYHKGIDW------------------------- 648 (873)
T ss_pred cccceEEEcCcccchhHHHHHHhhCcchhcCCCCCCchhheeeccCCccccchhh-------------------------
Confidence 47889999999999999999999999987643 2222211 01111122
Q ss_pred HHHHHHHHHHH-hcCCCCceEEEeCCCCccc--H-HHHHHHCCCCeEEEEEeChhHHHHHHhhccccc-------CCC--
Q psy3832 184 AIAAFCLEVIA-RHGEPAERLCNKDPLTLKS--A-DYLSEIFPFAKFIFMVRDGRATVHSIISRKVTI-------TGF-- 250 (357)
Q Consensus 184 ~~~~~~l~~i~-~~~~~~~~~~dK~P~~~~~--l-~~i~~~FP~aK~I~lvRdP~dv~~S~~~~~~~~-------~gf-- 250 (357)
|++... ........+.+|+-.++.. + ..-+.+.|.||+|-|.-||.|.+.|++.+.... ++|
T Consensus 649 -----YMdfFP~psn~~tdf~FEKSAtYFdse~aPkraasLvP~AKIvtILinPadRAYSWyQHqraH~DpvAl~~~fye 723 (873)
T KOG3703|consen 649 -----YMDFFPVPSNTTTDFLFEKSATYFDSEVAPKRAASLVPHAKIVTILINPADRAYSWYQHQRAHEDPVALNYSFYE 723 (873)
T ss_pred -----HHhcCCCCccccchheeeccccccCCcccchhhhhhCCcceEEEEEeChHHhhhHHHHHHhhcCCcceecceeEE
Confidence 111111 0011112345555444321 1 234567799999999999999999999865321 111
Q ss_pred ------C----h----------HHHHHHHHHHHHHHHHHHhhhhhcccCCCccEEEecchhccCHHHHHHHHHHHhCCCC
Q psy3832 251 ------D----L----------ESYRQCLKKWNEAISIIFGDEADRTKLCGVPKPVCLCSKVSEPDDACKSIANALGATN 310 (357)
Q Consensus 251 ------d----l----------~~~~~~~~~W~~~~~~~~~~~~~~dr~~~~il~V~YEDLv~dP~~~l~~I~~FLGL~~ 310 (357)
+ + ..|...+.+|..++.. .++++|.-++|-.+|..+|..+..|||+.+
T Consensus 724 VIsas~~aps~lk~lq~RClvpG~Ya~HlerWL~y~~~------------~QlliiDg~qLr~~Pa~vm~~~qkfLgv~p 791 (873)
T KOG3703|consen 724 VISASSSAPSALKALQNRCLVPGWYATHLERWLTYFPA------------QQLLIIDGQQLRTNPATVMNELQKFLGVTP 791 (873)
T ss_pred EEecCCCCcHHHHHHHHhccCcchHHHHHHHHHHhCCc------------ccEEEEccHHhccCcHHHHHHHHHHhCCCC
Confidence 0 1 1366677788776652 334899999999999999999999999954
Q ss_pred C
Q psy3832 311 P 311 (357)
Q Consensus 311 ~ 311 (357)
.
T Consensus 792 ~ 792 (873)
T KOG3703|consen 792 E 792 (873)
T ss_pred C
Confidence 3
No 10
>COG3551 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.47 E-value=2.4e-06 Score=81.00 Aligned_cols=103 Identities=14% Similarity=0.030 Sum_probs=73.2
Q ss_pred CCceEEEeCCCCcccHHHHHHHCC---C-CeEEEEEeChhHHHHHHhhcccccCCCChHHHHHHHHHHHHHHHHHHhhhh
Q psy3832 199 PAERLCNKDPLTLKSADYLSEIFP---F-AKFIFMVRDGRATVHSIISRKVTITGFDLESYRQCLKKWNEAISIIFGDEA 274 (357)
Q Consensus 199 ~~~~~~dK~P~~~~~l~~i~~~FP---~-aK~I~lvRdP~dv~~S~~~~~~~~~gfdl~~~~~~~~~W~~~~~~~~~~~~ 274 (357)
..+.|+.|+|.....++++...|- + ..+|.-.|+|..|+.|..++... ...+.+..|-.+.-......+
T Consensus 106 ~kpl~gIKDPRm~r~~p~w~~~~d~~~~~~~~iv~~r~plsVA~sl~rrD~~-------~leksliLw~~h~~~~~~~~~ 178 (402)
T COG3551 106 GKPLWGIKDPRMLRTFPLWKGPMDRVADITYIIVHRRIPLSVASSLRRRDMT-------ELEKSLILWPYHGNKQRIREQ 178 (402)
T ss_pred CCceeeecCcchhcccHHhhhHHHHhccceeEEeecCCcHHHHHHHHhhhhh-------hchHHHHHHHHhhHHHHHHHH
Confidence 357899999999999998887774 2 34566678999999999887532 223444556544322221111
Q ss_pred hcccCCCccEEEecchhccCHHHHHHHHHHHhCCCCCcc
Q psy3832 275 DRTKLCGVPKPVCLCSKVSEPDDACKSIANALGATNPKC 313 (357)
Q Consensus 275 ~~dr~~~~il~V~YEDLv~dP~~~l~~I~~FLGL~~~~~ 313 (357)
..+. ..+.||-++.||.+.+.++..-+|++..++
T Consensus 179 h~~~-----~~~~yd~~l~d~rqh~dr~~~~~~~~v~~a 212 (402)
T COG3551 179 HVEE-----GADIYDVHLSDLRQHPDRLVAAVNQRVGRA 212 (402)
T ss_pred hccc-----hhhhHHHHHhhHHhChHHHHHHhcCcCCcc
Confidence 1222 578999999999999999999999987754
No 11
>PRK13808 adenylate kinase; Provisional
Probab=90.94 E-value=17 Score=35.79 Aligned_cols=176 Identities=14% Similarity=0.091 Sum_probs=85.2
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCccCCCCCchHHHHHhhHhhhhhhhhhhhhhhhhccC-CCHHHHHHHHHHHHHHHHH
Q psy3832 116 IFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQHWIRSQKECQVYLISCTCQ-VYLIVINAAIAAFCLEVIA 194 (357)
Q Consensus 116 IfIvG~pRSGTTlL~~lL~~hP~v~~~~E~~~l~~~~~~~~~w~~~~~e~~~~L~~~~~~-~~~~~l~~~~~~~~l~~i~ 194 (357)
|+|+|.|-||-|-+..+|.+.-++.+..-..++...+.....+..... .+.+ ..+ ++++.+...+.. .+.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~----~~~~-~G~lVPdeiv~~li~e----~l~ 73 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAK----DIMA-SGGLVPDEVVVGIISD----RIE 73 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHH----HHHH-cCCCCCHHHHHHHHHH----HHh
Confidence 899999999999999999987665444333333221111111111000 1110 111 223333322222 232
Q ss_pred hcCCCCceEEEeCCCCcccHHHHHHHCC----CCeEEEEEeChhHHHHHHhhccccc---CC----CC--hHHHHHHHHH
Q psy3832 195 RHGEPAERLCNKDPLTLKSADYLSEIFP----FAKFIFMVRDGRATVHSIISRKVTI---TG----FD--LESYRQCLKK 261 (357)
Q Consensus 195 ~~~~~~~~~~dK~P~~~~~l~~i~~~FP----~aK~I~lvRdP~dv~~S~~~~~~~~---~g----fd--l~~~~~~~~~ 261 (357)
.......+++|--|.+...+..+..++. ..-+++.+.=|.+++...+...... .+ +| .+.+.+.+..
T Consensus 74 ~~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~ 153 (333)
T PRK13808 74 QPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLAS 153 (333)
T ss_pred cccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHH
Confidence 2222345788989998876665544321 2334555566777777776532110 01 22 2223333344
Q ss_pred HHHHHHHHHhhhhhcccCCCccEEEecchhccCHHHHHHHHHHHhC
Q psy3832 262 WNEAISIIFGDEADRTKLCGVPKPVCLCSKVSEPDDACKSIANALG 307 (357)
Q Consensus 262 W~~~~~~~~~~~~~~dr~~~~il~V~YEDLv~dP~~~l~~I~~FLG 307 (357)
|......++++.. ++ ++++.|+-+ .+++++..+|+..|.
T Consensus 154 Y~~~t~PLl~~Y~--e~--~~lv~IDa~---~siEEV~eeI~~~L~ 192 (333)
T PRK13808 154 YRAQTEPLVHYYS--EK--RKLLTVDGM---MTIDEVTREIGRVLA 192 (333)
T ss_pred HHHHhHHHHHHhh--cc--CcEEEEECC---CCHHHHHHHHHHHHH
Confidence 4444333333332 22 334666643 455666666666664
No 12
>PRK14527 adenylate kinase; Provisional
Probab=88.99 E-value=16 Score=32.41 Aligned_cols=179 Identities=17% Similarity=0.139 Sum_probs=86.8
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHhCCCCccCCCCCchHHHHHhhHhhhhhhhhhhhhhhhhccC-CCHHHHHHHHHHHHH
Q psy3832 112 FMPLIFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQHWIRSQKECQVYLISCTCQ-VYLIVINAAIAAFCL 190 (357)
Q Consensus 112 ~~p~IfIvG~pRSGTTlL~~lL~~hP~v~~~~E~~~l~~~~~~~~~w~~~~~e~~~~L~~~~~~-~~~~~l~~~~~~~~l 190 (357)
..+.|+|+|.|.||-|-+.+.|.....+....-..++.........+.....+ .+. ... .+.+.+.. ...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~---~~~--~g~~~p~~~~~~----l~~ 75 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKP---IME--AGDLVPDELILA----LIR 75 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHH---HHH--cCCCCcHHHHHH----HHH
Confidence 44679999999999999999998655443322111221111100111100000 011 011 11222221 122
Q ss_pred HHHHhcCCCCceEEEeCCCCcccHHHHHHHC----CCCeEEEEEeChhHHHHHHhhcccc-cCCCC--hHHHHHHHHHHH
Q psy3832 191 EVIARHGEPAERLCNKDPLTLKSADYLSEIF----PFAKFIFMVRDGRATVHSIISRKVT-ITGFD--LESYRQCLKKWN 263 (357)
Q Consensus 191 ~~i~~~~~~~~~~~dK~P~~~~~l~~i~~~F----P~aK~I~lvRdP~dv~~S~~~~~~~-~~gfd--l~~~~~~~~~W~ 263 (357)
+.+.... ....++|-.|.+......+..++ ....+|+...=|.+++...+..... ....| .+...+.+..|.
T Consensus 76 ~~l~~~~-~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~ 154 (191)
T PRK14527 76 DELAGME-PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYR 154 (191)
T ss_pred HHHhcCC-CCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHH
Confidence 2232211 13467787887765544443322 3455566667777777655543221 11121 223344444455
Q ss_pred HHHHHHHhhhhhcccCCCccEEEecchhccCHHHHHHHHHHHhC
Q psy3832 264 EAISIIFGDEADRTKLCGVPKPVCLCSKVSEPDDACKSIANALG 307 (357)
Q Consensus 264 ~~~~~~~~~~~~~dr~~~~il~V~YEDLv~dP~~~l~~I~~FLG 307 (357)
......++.... + +.+..|.- -.+++.+.++|+..||
T Consensus 155 ~~~~~v~~~y~~--~--~~~~~id~---~~~~~~v~~~i~~~l~ 191 (191)
T PRK14527 155 EQTQPLVDYYEA--R--GHLKRVDG---LGTPDEVYARILKALG 191 (191)
T ss_pred HHhHHHHHHHHh--c--CCEEEEEC---CCCHHHHHHHHHHhhC
Confidence 444444444432 2 33466663 3467888999998887
No 13
>PF06990 Gal-3-0_sulfotr: Galactose-3-O-sulfotransferase ; InterPro: IPR009729 This family consists of several mammalian galactose-3-O-sulphotransferase proteins. Gal-3-O-sulphotransferase is thought to play a critical role in 3'-sulphation of N-acetyllactosamine in both O- and N-glycans [].; GO: 0001733 galactosylceramide sulfotransferase activity, 0009058 biosynthetic process, 0005794 Golgi apparatus, 0016021 integral to membrane
Probab=88.44 E-value=1.2 Score=44.99 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=27.5
Q ss_pred cHHHHHHHCC-CCeEEEEEeChhHHHHHHhhcc
Q psy3832 213 SADYLSEIFP-FAKFIFMVRDGRATVHSIISRK 244 (357)
Q Consensus 213 ~l~~i~~~FP-~aK~I~lvRdP~dv~~S~~~~~ 244 (357)
..+.+.+++| |+++|-|+|||.....|.+...
T Consensus 137 n~~~~~~lmP~dt~yiTILRdP~~~feS~f~Yy 169 (402)
T PF06990_consen 137 NRPEVRKLMPPDTKYITILRDPVSHFESSFNYY 169 (402)
T ss_pred CHHHHHHhCCCCCeEEEEEcCHHHHHHhHHHHh
Confidence 3567888998 7999999999999999998754
No 14
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=87.20 E-value=19 Score=31.29 Aligned_cols=175 Identities=13% Similarity=0.152 Sum_probs=80.6
Q ss_pred cEEEEcCCCchHHHHHHHHHhCCCCccCCCCCchHHHHHhhHhhhhhhhhhhhhhhhhccC-CCHHHHHHHHHHHHHHHH
Q psy3832 115 LIFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQHWIRSQKECQVYLISCTCQ-VYLIVINAAIAAFCLEVI 193 (357)
Q Consensus 115 ~IfIvG~pRSGTTlL~~lL~~hP~v~~~~E~~~l~~~~~~~~~w~~~~~e~~~~L~~~~~~-~~~~~l~~~~~~~~l~~i 193 (357)
.|+|+|.|.||-|-+.+.|..+-.+....-..++.........+...-. . .+. ... ++++.+. ..+.+.+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~-~--~~~--~g~~~~~~~~~----~ll~~~~ 71 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIE-S--MIK--NGKIVPSEVTV----KLLKNAI 71 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHH-H--HHH--CCCcCCHHHHH----HHHHHHH
Confidence 4899999999999999999987665433322233221110011111000 0 011 111 2222222 2222233
Q ss_pred HhcCCCCceEEEeCCCCcccHHHHHHHCC---CCeEEEEEeChhHHHHHHhhcccccCC-CC--hHHHHHHHHHHHHHHH
Q psy3832 194 ARHGEPAERLCNKDPLTLKSADYLSEIFP---FAKFIFMVRDGRATVHSIISRKVTITG-FD--LESYRQCLKKWNEAIS 267 (357)
Q Consensus 194 ~~~~~~~~~~~dK~P~~~~~l~~i~~~FP---~aK~I~lvRdP~dv~~S~~~~~~~~~g-fd--l~~~~~~~~~W~~~~~ 267 (357)
...+ ...+++|-.|.+......+..... .+.+++.+.-|.+++...........+ .+ .+.+.+.+..+.....
T Consensus 72 ~~~~-~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~ 150 (183)
T TIGR01359 72 QADG-SKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTL 150 (183)
T ss_pred hccC-CCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3222 345788889988766555444321 223344445555665544432211111 11 2222333333333322
Q ss_pred HHHhhhhhcccCCCccEEEecchhccCHHHHHHHHHHHh
Q psy3832 268 IIFGDEADRTKLCGVPKPVCLCSKVSEPDDACKSIANAL 306 (357)
Q Consensus 268 ~~~~~~~~~dr~~~~il~V~YEDLv~dP~~~l~~I~~FL 306 (357)
..++..... ++++.|.-+ .+|+...++|.+.|
T Consensus 151 ~i~~~~~~~----~~~~~Id~~---~~~~~v~~~i~~~l 182 (183)
T TIGR01359 151 PVIEHYENK----GKVKEINAE---GSVEEVFEDVEKIF 182 (183)
T ss_pred HHHHHHHhC----CCEEEEECC---CCHHHHHHHHHHHh
Confidence 222222222 223566644 57788888888765
No 15
>PRK00279 adk adenylate kinase; Reviewed
Probab=85.86 E-value=27 Score=31.62 Aligned_cols=175 Identities=16% Similarity=0.174 Sum_probs=89.0
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCccCCCCCchHHHHHhhHhhhhhhhhhhhhhhhhccC--CCHHHHHHHHHHHHHHHH
Q psy3832 116 IFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQHWIRSQKECQVYLISCTCQ--VYLIVINAAIAAFCLEVI 193 (357)
Q Consensus 116 IfIvG~pRSGTTlL~~lL~~hP~v~~~~E~~~l~~~~~~~~~w~~~~~e~~~~L~~~~~~--~~~~~l~~~~~~~~l~~i 193 (357)
|+|+|.|-||-|-+.+.|+.+-++....-...+................ .+ ..| ++.+.+. ..+.+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~---~~---~~g~~~p~~~~~----~~i~~~l 72 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKS---YM---DAGELVPDEIVI----GLVKERL 72 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHH---HH---HcCCcCCHHHHH----HHHHHHH
Confidence 8999999999999999999876654443223333221111111110000 01 111 2222322 2222223
Q ss_pred HhcCCCCceEEEeCCCCcccHHHHHHHCC----CCeEEEEEeChhHHHHHHhhcccc--cCC------------------
Q psy3832 194 ARHGEPAERLCNKDPLTLKSADYLSEIFP----FAKFIFMVRDGRATVHSIISRKVT--ITG------------------ 249 (357)
Q Consensus 194 ~~~~~~~~~~~dK~P~~~~~l~~i~~~FP----~aK~I~lvRdP~dv~~S~~~~~~~--~~g------------------ 249 (357)
........+++|-.|.....+..+.+.+. .+.+++.+-=|.+++......... ..|
T Consensus 73 ~~~~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~ 152 (215)
T PRK00279 73 AQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDV 152 (215)
T ss_pred hccCccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcC
Confidence 32222235778888988776666644331 222445556666666554433210 000
Q ss_pred --------C-C-hHHHHHHHHHHHHHHHHHHhhhhhcccCCCccEEEecchhccCHHHHHHHHHHHhC
Q psy3832 250 --------F-D-LESYRQCLKKWNEAISIIFGDEADRTKLCGVPKPVCLCSKVSEPDDACKSIANALG 307 (357)
Q Consensus 250 --------f-d-l~~~~~~~~~W~~~~~~~~~~~~~~dr~~~~il~V~YEDLv~dP~~~l~~I~~FLG 307 (357)
- | .+.+.+-+..|.......++.... + +.++.|.-+ .+|+.+.+.|+..|.
T Consensus 153 ~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~--~--~~~~~id~~---~~~~~v~~~i~~~l~ 213 (215)
T PRK00279 153 CGEELIQRADDNEETVRKRLEVYHKQTAPLIDYYKK--K--GKLKKIDGT---GSIDEVFADILKALG 213 (215)
T ss_pred CCCcccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHh--C--CCEEEEECC---CCHHHHHHHHHHHHh
Confidence 0 1 123455556666665555555442 1 333666654 688888888887764
No 16
>PRK02496 adk adenylate kinase; Provisional
Probab=82.98 E-value=31 Score=30.13 Aligned_cols=173 Identities=13% Similarity=0.118 Sum_probs=82.2
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCccCCCCCchHHHHHhhHhhhhhhhhhhhhhhhhccC-CCHHHHHHHHHHHHHHHHH
Q psy3832 116 IFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQHWIRSQKECQVYLISCTCQ-VYLIVINAAIAAFCLEVIA 194 (357)
Q Consensus 116 IfIvG~pRSGTTlL~~lL~~hP~v~~~~E~~~l~~~~~~~~~w~~~~~e~~~~L~~~~~~-~~~~~l~~~~~~~~l~~i~ 194 (357)
|+|+|.|-||-|-+.+.|...-.+....-...+................ .+. ... .+++.+. ..+.+.+.
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~---~~~--~g~~~~~~~~~----~~l~~~l~ 74 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQG---YMD--KGELVPDQLVL----DLVQERLQ 74 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHH---HHH--CCCccCHHHHH----HHHHHHHh
Confidence 8999999999999999998754322111111111111100000000000 011 011 1122222 22222232
Q ss_pred hcCCCCceEEEeCCCCcccHHHHHHH---C-CCCeEEEEEeChhHHHHHHhhcccccCCCCh-HHHHHHHHHHHHHHHHH
Q psy3832 195 RHGEPAERLCNKDPLTLKSADYLSEI---F-PFAKFIFMVRDGRATVHSIISRKVTITGFDL-ESYRQCLKKWNEAISII 269 (357)
Q Consensus 195 ~~~~~~~~~~dK~P~~~~~l~~i~~~---F-P~aK~I~lvRdP~dv~~S~~~~~~~~~gfdl-~~~~~~~~~W~~~~~~~ 269 (357)
.......+++|-.|.+......+... + ..+..++...-|.+++......... ..+. +.+.+.+..|.......
T Consensus 75 ~~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~--~dd~~~~~~~r~~~y~~~~~~v 152 (184)
T PRK02496 75 QPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGR--KDDTEEVIRRRLEVYREQTAPL 152 (184)
T ss_pred CcCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHHHHHH
Confidence 22222356788888876555444432 2 2345566667777776655443211 1122 22344555555544444
Q ss_pred HhhhhhcccCCCccEEEecchhccCHHHHHHHHHHHh
Q psy3832 270 FGDEADRTKLCGVPKPVCLCSKVSEPDDACKSIANAL 306 (357)
Q Consensus 270 ~~~~~~~dr~~~~il~V~YEDLv~dP~~~l~~I~~FL 306 (357)
++..... +.++.|.-+. +++...++|...|
T Consensus 153 ~~~~~~~----~~~~~Ida~~---~~~~V~~~i~~~l 182 (184)
T PRK02496 153 IDYYRDR----QKLLTIDGNQ---SVEAVTTELKAAL 182 (184)
T ss_pred HHHHHhc----CCEEEEECCC---CHHHHHHHHHHHh
Confidence 4333322 2235665443 7888888888776
No 17
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=81.85 E-value=39 Score=30.41 Aligned_cols=174 Identities=15% Similarity=0.128 Sum_probs=87.1
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCccCCCCCchHHHHHhhHhhhhhhhhhhhhhhhhccC--CCHHHHHHHHHHHHHHHH
Q psy3832 116 IFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQHWIRSQKECQVYLISCTCQ--VYLIVINAAIAAFCLEVI 193 (357)
Q Consensus 116 IfIvG~pRSGTTlL~~lL~~hP~v~~~~E~~~l~~~~~~~~~w~~~~~e~~~~L~~~~~~--~~~~~l~~~~~~~~l~~i 193 (357)
|+|+|.|-||-|-+.+.|++.-.+....-..++............... .+. ..| ++++.+. ..+.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~----~~~--~~g~~vp~~~~~----~l~~~~i 71 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAK----EYM--EKGELVPDEIVN----QLVKERL 71 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHH----HHH--hCCCCCCHHHHH----HHHHHHH
Confidence 899999999999999999986554333322222221111111100000 010 111 1222222 2222223
Q ss_pred Hhc-CCCCceEEEeCCCCcccHHHHHHHCC-CCeEEEEEeChhHHHHHHhhcccc--cCC--------------------
Q psy3832 194 ARH-GEPAERLCNKDPLTLKSADYLSEIFP-FAKFIFMVRDGRATVHSIISRKVT--ITG-------------------- 249 (357)
Q Consensus 194 ~~~-~~~~~~~~dK~P~~~~~l~~i~~~FP-~aK~I~lvRdP~dv~~S~~~~~~~--~~g-------------------- 249 (357)
... .....+++|--|.....+..+...+. .+-+|+.+==|.+++...+..... ..|
T Consensus 72 ~~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~ 151 (210)
T TIGR01351 72 TQNQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTG 151 (210)
T ss_pred hcCcccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccC
Confidence 321 11245778889998877777777764 344455555566666655543210 000
Q ss_pred ------C-C-hHHHHHHHHHHHHHHHHHHhhhhhcccCCCccEEEecchhccCHHHHHHHHHHHh
Q psy3832 250 ------F-D-LESYRQCLKKWNEAISIIFGDEADRTKLCGVPKPVCLCSKVSEPDDACKSIANAL 306 (357)
Q Consensus 250 ------f-d-l~~~~~~~~~W~~~~~~~~~~~~~~dr~~~~il~V~YEDLv~dP~~~l~~I~~FL 306 (357)
. | .+.+.+-+..|.......++..... +.++.|.- -.+++.+.+.|.+.|
T Consensus 152 ~~l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~----~~~~~id~---~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 152 ELLIQREDDTEEVVKKRLEVYKEQTEPLIDYYKKR----GILVQIDG---NGPIDEVWKRILEAL 209 (210)
T ss_pred CccccCCCCCHHHHHHHHHHHHHhhHHHHHHHHhC----CCEEEEEC---CCCHHHHHHHHHHhh
Confidence 0 1 1223444555555554444444322 22355543 347888888888765
No 18
>PRK14526 adenylate kinase; Provisional
Probab=80.44 E-value=46 Score=30.39 Aligned_cols=175 Identities=11% Similarity=0.072 Sum_probs=91.7
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCccCCCCCchHHHHHhhHhhhhhhhhhhhhhhhhccC--CCHHHHHHHHHHHHHHHH
Q psy3832 116 IFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQHWIRSQKECQVYLISCTCQ--VYLIVINAAIAAFCLEVI 193 (357)
Q Consensus 116 IfIvG~pRSGTTlL~~lL~~hP~v~~~~E~~~l~~~~~~~~~w~~~~~e~~~~L~~~~~~--~~~~~l~~~~~~~~l~~i 193 (357)
|+|+|.|-||-|-+.++|++.-.+....-...+............ .+..+. ..| ++++.. ...+.+.+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~----~i~~~~--~~g~lvpd~~~----~~lv~~~l 72 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGK----EIKQIV--ENGQLVPDSIT----IKIVEDKI 72 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhH----HHHHHH--HcCccCChHHH----HHHHHHHH
Confidence 789999999999999999976443322211122111000000000 000010 111 122222 22233333
Q ss_pred HhcCCCCceEEEeCCCCcccHHHHHHHCCCCeEEEEEeChhHHHHHHhhcccc--cCC------C---------------
Q psy3832 194 ARHGEPAERLCNKDPLTLKSADYLSEIFPFAKFIFMVRDGRATVHSIISRKVT--ITG------F--------------- 250 (357)
Q Consensus 194 ~~~~~~~~~~~dK~P~~~~~l~~i~~~FP~aK~I~lvRdP~dv~~S~~~~~~~--~~g------f--------------- 250 (357)
........+++|--|.+...+..+...+|+..+|++. =|.+++......... ..| |
T Consensus 73 ~~~~~~~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~-~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~ 151 (211)
T PRK14526 73 NTIKNNDNFILDGFPRNINQAKALDKFLPNIKIINFL-IDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGD 151 (211)
T ss_pred hcccccCcEEEECCCCCHHHHHHHHHhcCCCEEEEEE-CCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCe
Confidence 3322234577899999999888888888876676665 467777665543210 000 0
Q ss_pred ------C-hHHHHHHHHHHHHHHHHHHhhhhhcccCCCccEEEecchhccCHHHHHHHHHHHhCC
Q psy3832 251 ------D-LESYRQCLKKWNEAISIIFGDEADRTKLCGVPKPVCLCSKVSEPDDACKSIANALGA 308 (357)
Q Consensus 251 ------d-l~~~~~~~~~W~~~~~~~~~~~~~~dr~~~~il~V~YEDLv~dP~~~l~~I~~FLGL 308 (357)
| .+.+.+-+..|.......++.... + +.++.|. =-.+++.+.++|.+.|+-
T Consensus 152 l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~--~--~~~~~id---~~~~~~~V~~~i~~~l~~ 209 (211)
T PRK14526 152 LYQRKDDKEESLKTRLQEYKLQTKPLIEFYSK--C--NRLNNID---ASKDIDEVKKKLIEIISK 209 (211)
T ss_pred eeccCCCCHHHHHHHHHHHHHhhhHHHHHHHh--c--CCEEEEE---CCCCHHHHHHHHHHHHcc
Confidence 1 123444555566555555555442 2 2235554 345788889999888763
No 19
>PRK13949 shikimate kinase; Provisional
Probab=80.41 E-value=39 Score=29.54 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.5
Q ss_pred cEEEEcCCCchHHHHHHHHHhCCCC
Q psy3832 115 LIFIGGVPRSGTTLMRAMLDAHPDV 139 (357)
Q Consensus 115 ~IfIvG~pRSGTTlL~~lL~~hP~v 139 (357)
.|+|+|+|-||-|-+.++|+.+-++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~ 27 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4999999999999999999987654
No 20
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=79.13 E-value=42 Score=29.06 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=22.6
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHhCC
Q psy3832 112 FMPLIFIGGVPRSGTTLMRAMLDAHP 137 (357)
Q Consensus 112 ~~p~IfIvG~pRSGTTlL~~lL~~hP 137 (357)
+.|.|+|+|.|.||-|-+.+.|...-
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998653
No 21
>PRK14532 adenylate kinase; Provisional
Probab=78.93 E-value=44 Score=29.25 Aligned_cols=175 Identities=14% Similarity=0.111 Sum_probs=81.7
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCccCCCCCchHHHHHhhHhhhhhhhhhhhhhhhhccC--CCHHHHHHHHHHHHHHHH
Q psy3832 116 IFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQHWIRSQKECQVYLISCTCQ--VYLIVINAAIAAFCLEVI 193 (357)
Q Consensus 116 IfIvG~pRSGTTlL~~lL~~hP~v~~~~E~~~l~~~~~~~~~w~~~~~e~~~~L~~~~~~--~~~~~l~~~~~~~~l~~i 193 (357)
|+|+|.|-||-|-+++.|++..++....-...+.........+...-. .+. ..| ++++.+.. .+.+.+
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~----~~~--~~g~~~~~~~~~~----~~~~~~ 72 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVK----GIM--DRGELVSDEIVIA----LIEERL 72 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHH----HHH--HCCCccCHHHHHH----HHHHHH
Confidence 899999999999999999987664433322222221111111111000 010 111 22333222 222223
Q ss_pred HhcCCCCceEEEeCCCCcccHHHHHHHC----CCCeEEEEEeChhHHHHHHhhcccc-cCCCC--hHHHHHHHHHHHHHH
Q psy3832 194 ARHGEPAERLCNKDPLTLKSADYLSEIF----PFAKFIFMVRDGRATVHSIISRKVT-ITGFD--LESYRQCLKKWNEAI 266 (357)
Q Consensus 194 ~~~~~~~~~~~dK~P~~~~~l~~i~~~F----P~aK~I~lvRdP~dv~~S~~~~~~~-~~gfd--l~~~~~~~~~W~~~~ 266 (357)
.........++|-.|.+......+..+. ....+++.+.=|.+++......... ....+ ...+.+-+..+....
T Consensus 73 ~~~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~ 152 (188)
T PRK14532 73 PEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQT 152 (188)
T ss_pred hCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHH
Confidence 2222234577888898776555443321 1222355555566666554432211 11122 223333333333333
Q ss_pred HHHHhhhhhcccCCCccEEEecchhccCHHHHHHHHHHHhC
Q psy3832 267 SIIFGDEADRTKLCGVPKPVCLCSKVSEPDDACKSIANALG 307 (357)
Q Consensus 267 ~~~~~~~~~~dr~~~~il~V~YEDLv~dP~~~l~~I~~FLG 307 (357)
...++..... +.++.|.- ..+|+...++|.+.|.
T Consensus 153 ~~i~~~y~~~----~~~~~id~---~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 153 APLLPYYAGQ----GKLTEVDG---MGSIEAVAASIDAALE 186 (188)
T ss_pred HHHHHHHHhc----CCEEEEEC---CCCHHHHHHHHHHHHh
Confidence 2222222222 22255543 3688899999988773
No 22
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=77.77 E-value=47 Score=28.94 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=60.2
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCccCCCCCchHHHHHhhHhhhhhhhhhhhhhhhhccC-CCHHHHHHHHHHHHHHHHH
Q psy3832 116 IFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQHWIRSQKECQVYLISCTCQ-VYLIVINAAIAAFCLEVIA 194 (357)
Q Consensus 116 IfIvG~pRSGTTlL~~lL~~hP~v~~~~E~~~l~~~~~~~~~w~~~~~e~~~~L~~~~~~-~~~~~l~~~~~~~~l~~i~ 194 (357)
|+|+|.|-||-|.+.+.|+.+..+....-...+.............-.. .+. ... .+.+.+. ..+...+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~---~~~--~g~~~~~~~~~----~l~~~~l~ 72 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKE---YID--SGKLVPDEIVI----KLLKERLK 72 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHH---HHH--cCCccCHHHHH----HHHHHHHh
Confidence 8999999999999999999986554433222222221111001000000 011 011 1222222 22222232
Q ss_pred hcCCCCceEEEeCCCCcccHHHHHHHCC---CCeEEEEEeChhHHHHHHhh
Q psy3832 195 RHGEPAERLCNKDPLTLKSADYLSEIFP---FAKFIFMVRDGRATVHSIIS 242 (357)
Q Consensus 195 ~~~~~~~~~~dK~P~~~~~l~~i~~~FP---~aK~I~lvRdP~dv~~S~~~ 242 (357)
.......++++-.|.....+..+.+.+. ...+++.+.-|.+++...+.
T Consensus 73 ~~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~ 123 (194)
T cd01428 73 KPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERIL 123 (194)
T ss_pred cccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHH
Confidence 2112245678888988777777777663 34445555666666655554
No 23
>PRK14528 adenylate kinase; Provisional
Probab=70.55 E-value=77 Score=28.05 Aligned_cols=176 Identities=15% Similarity=0.093 Sum_probs=86.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHhCCCCccCCCCCchHHHHHhhHhhhhhhhhhhhhhhhhccC--CCHHHHHHHHHHHHHH
Q psy3832 114 PLIFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQHWIRSQKECQVYLISCTCQ--VYLIVINAAIAAFCLE 191 (357)
Q Consensus 114 p~IfIvG~pRSGTTlL~~lL~~hP~v~~~~E~~~l~~~~~~~~~w~~~~~e~~~~L~~~~~~--~~~~~l~~~~~~~~l~ 191 (357)
+.|+|.|.|-||-|-+.+.|+.+-++....-...+..... .+...... ...+. ..| .+.+.+... +.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~---~~~~~g~~-~~~~~--~~g~lvp~~~~~~~----~~~ 71 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVK---NQTAMGIE-AKRYM--DAGDLVPDSVVIGI----IKD 71 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhh---cCCHHHHH-HHHHH--hCCCccCHHHHHHH----HHH
Confidence 4589999999999999999987654322211111111111 11110000 00011 112 112221111 222
Q ss_pred HHHhcCCCCceEEEeCCCCcccHHHHHHHC----CCCeEEEEEeChhHHHHHHhhcccccCC-C-C-hHHHHHHHHHHHH
Q psy3832 192 VIARHGEPAERLCNKDPLTLKSADYLSEIF----PFAKFIFMVRDGRATVHSIISRKVTITG-F-D-LESYRQCLKKWNE 264 (357)
Q Consensus 192 ~i~~~~~~~~~~~dK~P~~~~~l~~i~~~F----P~aK~I~lvRdP~dv~~S~~~~~~~~~g-f-d-l~~~~~~~~~W~~ 264 (357)
.+.........++|--|.+...+..+.+.. ..+.+|+.+.=|.+++...........+ . | .+...+-+..+..
T Consensus 72 ~l~~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~ 151 (186)
T PRK14528 72 RIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNK 151 (186)
T ss_pred HHhCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHH
Confidence 232222234577888898877666555432 4566777778777777665543221111 1 2 2334444444555
Q ss_pred HHHHHHhhhhhcccCCCccEEEecchhccCHHHHHHHHHHHh
Q psy3832 265 AISIIFGDEADRTKLCGVPKPVCLCSKVSEPDDACKSIANAL 306 (357)
Q Consensus 265 ~~~~~~~~~~~~dr~~~~il~V~YEDLv~dP~~~l~~I~~FL 306 (357)
.....++.... + +.++.|. =..+++.....|..+|
T Consensus 152 ~~~pv~~~y~~--~--~~~~~i~---~~~~~~~v~~~~~~~~ 186 (186)
T PRK14528 152 KTLPLLDFYAA--Q--KKLSQVN---GVGSLEEVTSLIQKEL 186 (186)
T ss_pred HhHHHHHHHHh--C--CCEEEEE---CCCCHHHHHHHHHHhC
Confidence 44445554443 2 3335554 3345777777777654
No 24
>PF08257 Sulfakinin: Sulfakinin family; InterPro: IPR013259 The sulfakinin (SK) family of neuropeptides have only been identified in crustaceans and insects. For most species there is the potential for producing two sulfakinin peptides, one has a short sulfakinin sequence. The function of the sulfakinins is difficult to assess. For the Periplaneta americana (American cockroach), various forms of the endogenous sulfakinins have been shown to be active on the hindgut, and also on the heart. In Calliphora vomitoria (Blue blowfly) the peptides act as neurotransmitters or neuromodulators, linking the brain with all thoracic and abdominal ganglia. In adults of Penaeus monodon (Penoeid shrimp) they appear to be restricted to a few neurones in the brain with a neural pathway extending along to the ventral thoracic and abdominal ganglia [].
Probab=65.73 E-value=2.5 Score=19.20 Aligned_cols=8 Identities=38% Similarity=0.634 Sum_probs=6.3
Q ss_pred cccccccc
Q psy3832 43 SNDIGRMN 50 (357)
Q Consensus 43 ~~~~~~~~ 50 (357)
++|.|||.
T Consensus 1 f~dyghmr 8 (9)
T PF08257_consen 1 FDDYGHMR 8 (9)
T ss_pred CCcccccc
Confidence 47899985
No 25
>PLN02200 adenylate kinase family protein
Probab=61.01 E-value=1.4e+02 Score=27.64 Aligned_cols=177 Identities=11% Similarity=0.079 Sum_probs=85.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHhCCCCccCCCCCchHHHHHhhHhhhhhhhhhhhhhhhh-ccC--CCHHHHHHHHHHHHH
Q psy3832 114 PLIFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQHWIRSQKECQVYLISC-TCQ--VYLIVINAAIAAFCL 190 (357)
Q Consensus 114 p~IfIvG~pRSGTTlL~~lL~~hP~v~~~~E~~~l~~~~~~~~~w~~~~~e~~~~L~~~-~~~--~~~~~l~~~~~~~~l 190 (357)
..|+|+|.|-||-|-+.+.|..+-++....-..++..-......... .+... ..| ++++... ..+.
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~-------~i~~~~~~G~~vp~e~~~----~~l~ 112 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGA-------MILNTIKEGKIVPSEVTV----KLIQ 112 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHH-------HHHHHHHcCCCCcHHHHH----HHHH
Confidence 35899999999999999999886654322211122111000000000 01100 111 2222221 1222
Q ss_pred HHHHhcCCCCceEEEeCCCCcccHHHHHHHCC-CCeEEEEEeChhHHHHHHhhcccccCCCC--hHHHHHHHHHHHHHHH
Q psy3832 191 EVIARHGEPAERLCNKDPLTLKSADYLSEIFP-FAKFIFMVRDGRATVHSIISRKVTITGFD--LESYRQCLKKWNEAIS 267 (357)
Q Consensus 191 ~~i~~~~~~~~~~~dK~P~~~~~l~~i~~~FP-~aK~I~lvRdP~dv~~S~~~~~~~~~gfd--l~~~~~~~~~W~~~~~ 267 (357)
+.+.... ....++|-.|........+...+. .+-+++.+.-|.+++......... ..++ .+...+-+..+.....
T Consensus 113 ~~l~~~~-~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~-~r~dd~~e~~~~Rl~~y~~~~~ 190 (234)
T PLN02200 113 KEMESSD-NNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQ-GRVDDNIDTIKKRLKVFNALNL 190 (234)
T ss_pred HHHhcCC-CCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcC-CCCCCCHHHHHHHHHHHHHHHH
Confidence 2232211 234678888887655544444331 233566667677776655443211 1122 2223344444544444
Q ss_pred HHHhhhhhcccCCCccEEEecchhccCHHHHHHHHHHHhCCCC
Q psy3832 268 IIFGDEADRTKLCGVPKPVCLCSKVSEPDDACKSIANALGATN 310 (357)
Q Consensus 268 ~~~~~~~~~dr~~~~il~V~YEDLv~dP~~~l~~I~~FLGL~~ 310 (357)
..++..... ++++.|+-+ .+|+++.+.|.+.+....
T Consensus 191 pv~~~y~~~----~~~~~IDa~---~~~eeV~~~v~~~l~~~~ 226 (234)
T PLN02200 191 PVIDYYSKK----GKLYTINAV---GTVDEIFEQVRPIFAACE 226 (234)
T ss_pred HHHHHHHhc----CCEEEEECC---CCHHHHHHHHHHHHHHcC
Confidence 434333322 334677644 388999999988876543
No 26
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=56.29 E-value=11 Score=30.31 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.5
Q ss_pred cEEEEcCCCchHHHHHHHHHhCC
Q psy3832 115 LIFIGGVPRSGTTLMRAMLDAHP 137 (357)
Q Consensus 115 ~IfIvG~pRSGTTlL~~lL~~hP 137 (357)
.|+|.|.|.||-|-+.+.|..+=
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999853
No 27
>PRK14531 adenylate kinase; Provisional
Probab=50.24 E-value=1.7e+02 Score=25.49 Aligned_cols=173 Identities=13% Similarity=0.112 Sum_probs=84.5
Q ss_pred cEEEEcCCCchHHHHHHHHHhCCCCccCCCCCchHHHHHhhHhhhhhhhhhhhhhhhhccC-CCHHHHHHHHHHHHHHHH
Q psy3832 115 LIFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQHWIRSQKECQVYLISCTCQ-VYLIVINAAIAAFCLEVI 193 (357)
Q Consensus 115 ~IfIvG~pRSGTTlL~~lL~~hP~v~~~~E~~~l~~~~~~~~~w~~~~~e~~~~L~~~~~~-~~~~~l~~~~~~~~l~~i 193 (357)
-|+|+|.|-||-|-+.+.|+..-++....=...+..-......+.....+ .+. ..+ ++++.+...+... +
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~---~~~--~G~~v~d~l~~~~~~~~----l 74 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEA---VMN--RGELVSDALVLAIVESQ----L 74 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHH---HHH--cCCCCCHHHHHHHHHHH----H
Confidence 49999999999999999998875543322112222111111111110000 011 111 2233333323222 2
Q ss_pred HhcCCCCceEEEeCCCCcccHHHHHHHCC----CCeEEEEEeChhHHHHHHhhcccccCCCCh-HHHHHHHHHHHHHHHH
Q psy3832 194 ARHGEPAERLCNKDPLTLKSADYLSEIFP----FAKFIFMVRDGRATVHSIISRKVTITGFDL-ESYRQCLKKWNEAISI 268 (357)
Q Consensus 194 ~~~~~~~~~~~dK~P~~~~~l~~i~~~FP----~aK~I~lvRdP~dv~~S~~~~~~~~~gfdl-~~~~~~~~~W~~~~~~ 268 (357)
.... ....++|-.|.+......+...+. ..-.|+.+.=|.+++.-....... .=|. +.+.+-+..|......
T Consensus 75 ~~~~-~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r--~dD~~e~i~~Rl~~y~~~~~p 151 (183)
T PRK14531 75 KALN-SGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGR--ADDNEAVIRNRLEVYREKTAP 151 (183)
T ss_pred hhcc-CCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCC--CCCCHHHHHHHHHHHHHHHHH
Confidence 2211 235778999998776655544321 233455566677766655443211 1121 2233344445444444
Q ss_pred HHhhhhhcccCCCccEEEecchhccCHHHHHHHHHHHh
Q psy3832 269 IFGDEADRTKLCGVPKPVCLCSKVSEPDDACKSIANAL 306 (357)
Q Consensus 269 ~~~~~~~~dr~~~~il~V~YEDLv~dP~~~l~~I~~FL 306 (357)
.++.... + +.++.|.-+ .+++.+...|...|
T Consensus 152 v~~~y~~--~--~~~~~id~~---~~~~~v~~~i~~~l 182 (183)
T PRK14531 152 LIDHYRQ--R--GLLQSVEAQ---GSIEAITERIEKVL 182 (183)
T ss_pred HHHHHHh--c--CCEEEEECC---CCHHHHHHHHHHHh
Confidence 4444332 2 334667654 56788888887765
No 28
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=48.42 E-value=11 Score=31.83 Aligned_cols=16 Identities=19% Similarity=0.629 Sum_probs=7.6
Q ss_pred eehHHHHHHHHHHHHH
Q psy3832 56 TVFLTVILVLCIFLMY 71 (357)
Q Consensus 56 ~~~~~~~~~~~~~~~~ 71 (357)
-+||++|++++|++|.
T Consensus 2 W~l~~iii~~i~l~~~ 17 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLF 17 (130)
T ss_pred eeeHHHHHHHHHHHHH
Confidence 4555555544434333
No 29
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=47.87 E-value=15 Score=31.54 Aligned_cols=29 Identities=31% Similarity=0.344 Sum_probs=21.3
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCccCCCC
Q psy3832 116 IFIGGVPRSGTTLMRAMLDAHPDVRCGQET 145 (357)
Q Consensus 116 IfIvG~pRSGTTlL~~lL~~hP~v~~~~E~ 145 (357)
|.|.|.|.||-|-|.+.|.++ ++.+.+|.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ 30 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEY 30 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--T
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeec
Confidence 789999999999999999999 76666665
No 30
>PLN02459 probable adenylate kinase
Probab=44.46 E-value=2.9e+02 Score=26.33 Aligned_cols=179 Identities=12% Similarity=0.048 Sum_probs=93.0
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCccCCCCCchHHHHHhhHhhhhhhhhhhhhhhhhccC--CCHHHHHHHHHHHHHHHH
Q psy3832 116 IFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQHWIRSQKECQVYLISCTCQ--VYLIVINAAIAAFCLEVI 193 (357)
Q Consensus 116 IfIvG~pRSGTTlL~~lL~~hP~v~~~~E~~~l~~~~~~~~~w~~~~~e~~~~L~~~~~~--~~~~~l~~~~~~~~l~~i 193 (357)
|+|+|.|-||-+-+...|...-.+....-...+.........+...-.+ .+ ..| ++.+.+...+. +.+
T Consensus 32 ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~---~~---~~G~lVPdeiv~~ll~----~~l 101 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKE---IV---NQGKLVPDEIIFSLLS----KRL 101 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHH---HH---HcCCccCHHHHHHHHH----HHH
Confidence 8889999999999999999876654333223332211111111110000 11 222 23333332222 223
Q ss_pred Hhc--CCCCceEEEeCCCCcccHHHHHHHCCCCeEEEEEeChhHHHHHHhhcccc--cCC--------------------
Q psy3832 194 ARH--GEPAERLCNKDPLTLKSADYLSEIFPFAKFIFMVRDGRATVHSIISRKVT--ITG-------------------- 249 (357)
Q Consensus 194 ~~~--~~~~~~~~dK~P~~~~~l~~i~~~FP~aK~I~lvRdP~dv~~S~~~~~~~--~~g-------------------- 249 (357)
... .....+++|--|.+...+..+....+--.+|++ -=|.+++...+..... ..|
T Consensus 102 ~~~~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L-~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~ 180 (261)
T PLN02459 102 EAGEEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNL-KLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIV 180 (261)
T ss_pred hcccccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEE-ECCHHHHHHHhhccccccccCcccccccccccccccccccc
Confidence 221 122457889999999888877766532234444 4455555544332110 000
Q ss_pred -----------------C-C-hHHHHHHHHHHHHHHHHHHhhhhhcccCCCccEEEecchhccCHHHHHHHHHHHhCCCC
Q psy3832 250 -----------------F-D-LESYRQCLKKWNEAISIIFGDEADRTKLCGVPKPVCLCSKVSEPDDACKSIANALGATN 310 (357)
Q Consensus 250 -----------------f-d-l~~~~~~~~~W~~~~~~~~~~~~~~dr~~~~il~V~YEDLv~dP~~~l~~I~~FLGL~~ 310 (357)
. | .+.+.+-+..|.......++.... + +.++.|. --.+++++.++|...|.++-
T Consensus 181 ~~p~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~--~--g~l~~id---~~~~~~eV~~~i~~~l~~~~ 253 (261)
T PLN02459 181 MPPLLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRK--R--GKLLEFE---LPGGIPETWPRLLQALNLDD 253 (261)
T ss_pred CCCCCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHh--c--CCeEEEe---CCCCHHHHHHHHHHHhchhh
Confidence 0 1 122344455555555555554442 2 2234444 44688999999999999986
Q ss_pred Cc
Q psy3832 311 PK 312 (357)
Q Consensus 311 ~~ 312 (357)
.+
T Consensus 254 ~~ 255 (261)
T PLN02459 254 ED 255 (261)
T ss_pred hh
Confidence 53
No 31
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=43.34 E-value=22 Score=31.72 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=27.1
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCccCCCCCchHHH
Q psy3832 116 IFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRI 151 (357)
Q Consensus 116 IfIvG~pRSGTTlL~~lL~~hP~v~~~~E~~~l~~~ 151 (357)
|-|.|.|-||||-++.+|+.|-...+..-..+|..+
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~ 38 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREM 38 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHH
Confidence 789999999999999999998765444433444433
No 32
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=41.95 E-value=24 Score=31.12 Aligned_cols=21 Identities=43% Similarity=0.797 Sum_probs=18.0
Q ss_pred EEEEcCCCch-HHHHHHHHHhC
Q psy3832 116 IFIGGVPRSG-TTLMRAMLDAH 136 (357)
Q Consensus 116 IfIvG~pRSG-TTlL~~lL~~h 136 (357)
|||.|.|.+| ||++.+++...
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999 89999988875
No 33
>PRK14529 adenylate kinase; Provisional
Probab=41.18 E-value=1.8e+02 Score=26.93 Aligned_cols=116 Identities=19% Similarity=0.139 Sum_probs=58.2
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCccCCCCCchHHHHHhhHhhhhhhhhhhhhhhhhccC--CCHHHHHHHHHHHHHHHH
Q psy3832 116 IFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQHWIRSQKECQVYLISCTCQ--VYLIVINAAIAAFCLEVI 193 (357)
Q Consensus 116 IfIvG~pRSGTTlL~~lL~~hP~v~~~~E~~~l~~~~~~~~~w~~~~~e~~~~L~~~~~~--~~~~~l~~~~~~~~l~~i 193 (357)
|+|.|.|-||-|-+.+.|..+-.+....-..++.............-.+ .+. .| ++.+..- ..+.+.+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~---~i~---~G~lvpdei~~----~lv~~~l 72 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKE---YID---RGDLVPDDITI----PMILETL 72 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHH---HHh---ccCcchHHHHH----HHHHHHH
Confidence 8999999999999999999866544332222221111100011100000 011 11 1222222 2222233
Q ss_pred HhcCCCCceEEEeCCCCcccHHHHHHHCC----CCeEEEEEeChhHHHHHHhh
Q psy3832 194 ARHGEPAERLCNKDPLTLKSADYLSEIFP----FAKFIFMVRDGRATVHSIIS 242 (357)
Q Consensus 194 ~~~~~~~~~~~dK~P~~~~~l~~i~~~FP----~aK~I~lvRdP~dv~~S~~~ 242 (357)
.... ....++|--|.+...+..+...+. ...+|+..-=|.+++...+.
T Consensus 73 ~~~~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~ 124 (223)
T PRK14529 73 KQDG-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIM 124 (223)
T ss_pred hccC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhh
Confidence 3323 345788999999887776654320 12234444566677665554
No 34
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=41.01 E-value=20 Score=34.19 Aligned_cols=24 Identities=42% Similarity=0.595 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHhC
Q psy3832 113 MPLIFIGGVPRSGTTLMRAMLDAH 136 (357)
Q Consensus 113 ~p~IfIvG~pRSGTTlL~~lL~~h 136 (357)
+|+|+|.|.|-||=|-+.+-|.+.
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Confidence 589999999999999888888773
No 35
>PTZ00088 adenylate kinase 1; Provisional
Probab=40.66 E-value=3e+02 Score=25.44 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=56.9
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCccCCCCCchHHHHHhhHhhhhhhhhhhhhhhhhccC--CCHHHHHHHHHHHHHHHH
Q psy3832 116 IFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQHWIRSQKECQVYLISCTCQ--VYLIVINAAIAAFCLEVI 193 (357)
Q Consensus 116 IfIvG~pRSGTTlL~~lL~~hP~v~~~~E~~~l~~~~~~~~~w~~~~~e~~~~L~~~~~~--~~~~~l~~~~~~~~l~~i 193 (357)
|+|+|.|-||-|-+++.|++.-++....--..+...... +...+. .+..+. ..| ++++.+...+...+.+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~---~t~lg~-~i~~~~--~~G~lvpd~iv~~lv~~~l~~~~ 82 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKA---KTTIGK-EIQKVV--TSGNLVPDNLVIAIVKDEIAKVT 82 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhc---CChHHH-HHHHHH--HcCCcCCHHHHHHHHHHHHHhhc
Confidence 999999999999999999987654333222222211110 100000 000011 112 233333332333222211
Q ss_pred HhcCCCCceEEEeCCCCcccHHHHHHHCCCCeEEEEEeChhHHHHHH
Q psy3832 194 ARHGEPAERLCNKDPLTLKSADYLSEIFPFAKFIFMVRDGRATVHSI 240 (357)
Q Consensus 194 ~~~~~~~~~~~dK~P~~~~~l~~i~~~FP~aK~I~lvRdP~dv~~S~ 240 (357)
......++++-.|.+...+..+.....--.+|++ --|.+++...
T Consensus 83 --~~~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l-~~~~~~~~~R 126 (229)
T PTZ00088 83 --DDCFKGFILDGFPRNLKQCKELGKITNIDLFVNI-YLPRNILIKK 126 (229)
T ss_pred --cccCceEEEecCCCCHHHHHHHHhcCCCCEEEEE-eCCHHHHHHH
Confidence 1222356788899998877776654322234444 4555554433
No 36
>PLN02674 adenylate kinase
Probab=40.48 E-value=3.2e+02 Score=25.68 Aligned_cols=174 Identities=14% Similarity=0.127 Sum_probs=88.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHhCCCCccCCCCCchHHHHHhhHhhhhhhhhhhhhhhhhccC--CCHHHHHHHHHHHHHH
Q psy3832 114 PLIFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQHWIRSQKECQVYLISCTCQ--VYLIVINAAIAAFCLE 191 (357)
Q Consensus 114 p~IfIvG~pRSGTTlL~~lL~~hP~v~~~~E~~~l~~~~~~~~~w~~~~~e~~~~L~~~~~~--~~~~~l~~~~~~~~l~ 191 (357)
+.|+|+|.|-||-+-+.+.|.++-++....-...+.........+...-. .+. ..| ++++.+.. .+.+
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~----~~~--~~G~lvpd~iv~~----lv~~ 101 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAK----EAM--DKGELVSDDLVVG----IIDE 101 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHH----HHH--HcCCccCHHHHHH----HHHH
Confidence 56999999999999999999997765443322233222111111111000 111 122 22222222 2223
Q ss_pred HHHhcCCCCceEEEeCCCCcccHHHHHHHC------CCCeEEEEEeChhHHHHHHhhcccc--cCC------C-------
Q psy3832 192 VIARHGEPAERLCNKDPLTLKSADYLSEIF------PFAKFIFMVRDGRATVHSIISRKVT--ITG------F------- 250 (357)
Q Consensus 192 ~i~~~~~~~~~~~dK~P~~~~~l~~i~~~F------P~aK~I~lvRdP~dv~~S~~~~~~~--~~g------f------- 250 (357)
.+.........++|--|.+...+..+...+ |++ +|++ -=|.+++.-.+..... ..| |
T Consensus 102 ~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~-vi~l-~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~ 179 (244)
T PLN02674 102 AMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDK-VLNF-AIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPG 179 (244)
T ss_pred HHhCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCE-EEEE-ECCHHHHHHHHhccccccccCCccccccCCCcccC
Confidence 333323234578899999987776665442 332 4444 3466666555442210 000 0
Q ss_pred --------------C-hHHHHHHHHHHHHHHHHHHhhhhhcccCCCccEEEecchhccCHHHHHHHHHHHh
Q psy3832 251 --------------D-LESYRQCLKKWNEAISIIFGDEADRTKLCGVPKPVCLCSKVSEPDDACKSIANAL 306 (357)
Q Consensus 251 --------------d-l~~~~~~~~~W~~~~~~~~~~~~~~dr~~~~il~V~YEDLv~dP~~~l~~I~~FL 306 (357)
| .+.+.+-+..|.......++.... + +.++.|.- -.+|+++.+.|...|
T Consensus 180 ~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~--~--g~l~~Ida---~~~~~eV~~~i~~~l 243 (244)
T PLN02674 180 VDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAK--K--GVVANLHA---EKPPKEVTAEVQKAL 243 (244)
T ss_pred cccccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHh--c--CCEEEEEC---CCCHHHHHHHHHHHh
Confidence 1 122344455555554545544432 2 23355553 347888888888765
No 37
>PRK08118 topology modulation protein; Reviewed
Probab=38.90 E-value=31 Score=30.17 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHhCCCC
Q psy3832 114 PLIFIGGVPRSGTTLMRAMLDAHPDV 139 (357)
Q Consensus 114 p~IfIvG~pRSGTTlL~~lL~~hP~v 139 (357)
+-|+|+|.|-||-|-|++.|+..-++
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34999999999999999999987553
No 38
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=38.26 E-value=25 Score=29.59 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=16.9
Q ss_pred EEEEcCCCch-HHHHHHHHHh
Q psy3832 116 IFIGGVPRSG-TTLMRAMLDA 135 (357)
Q Consensus 116 IfIvG~pRSG-TTlL~~lL~~ 135 (357)
|.|+|.+.|| ||++.+++..
T Consensus 3 i~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 7899999999 7777787765
No 39
>PRK13947 shikimate kinase; Provisional
Probab=37.32 E-value=34 Score=29.30 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.3
Q ss_pred cEEEEcCCCchHHHHHHHHHhCCC
Q psy3832 115 LIFIGGVPRSGTTLMRAMLDAHPD 138 (357)
Q Consensus 115 ~IfIvG~pRSGTTlL~~lL~~hP~ 138 (357)
.|+|+|+|-||-|-+++.|+..-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 599999999999999999998543
No 40
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=36.87 E-value=28 Score=28.55 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=21.1
Q ss_pred EEEEc-CCCchHHHHHHHHHhCCCCccC
Q psy3832 116 IFIGG-VPRSGTTLMRAMLDAHPDVRCG 142 (357)
Q Consensus 116 IfIvG-~pRSGTTlL~~lL~~hP~v~~~ 142 (357)
|.|+| .+-.|+.++..++. ||++...
T Consensus 2 V~IvGAtG~vG~~l~~lL~~-hp~~e~~ 28 (121)
T PF01118_consen 2 VAIVGATGYVGRELLRLLAE-HPDFELV 28 (121)
T ss_dssp EEEESTTSHHHHHHHHHHHH-TSTEEEE
T ss_pred EEEECCCCHHHHHHHHHHhc-CCCccEE
Confidence 67899 99999999876666 9997643
No 41
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=36.05 E-value=37 Score=29.79 Aligned_cols=25 Identities=40% Similarity=0.630 Sum_probs=19.0
Q ss_pred CcEEEEcCCCch-HHHHHHHH-HhCCC
Q psy3832 114 PLIFIGGVPRSG-TTLMRAML-DAHPD 138 (357)
Q Consensus 114 p~IfIvG~pRSG-TTlL~~lL-~~hP~ 138 (357)
|.++|.|..-|| ||+|.++| ....+
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~ 27 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQG 27 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 678899999999 88899999 44333
No 42
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=34.80 E-value=12 Score=29.41 Aligned_cols=34 Identities=21% Similarity=0.455 Sum_probs=26.7
Q ss_pred ccccccccccccCCceeehHHHHHHHHHHHHHHH
Q psy3832 40 DKVSNDIGRMNRGTRRTVFLTVILVLCIFLMYKL 73 (357)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
+++-.=-|+|....|+.+.++|+++|+++-+|++
T Consensus 13 ~~Lr~~c~~Lsp~~R~~vvl~ml~~fa~l~ly~~ 46 (85)
T PF13150_consen 13 DRLRRYCGRLSPKQRLRVVLVMLVLFAALCLYMT 46 (85)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556778888899999999999998888853
No 43
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=34.79 E-value=34 Score=28.58 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=16.5
Q ss_pred EEEEcCCCch-HHHHHHHHHh
Q psy3832 116 IFIGGVPRSG-TTLMRAMLDA 135 (357)
Q Consensus 116 IfIvG~pRSG-TTlL~~lL~~ 135 (357)
|+|+|.+.+| ||++.++.+.
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLING 22 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 7899999999 7777777664
No 44
>PRK14737 gmk guanylate kinase; Provisional
Probab=34.02 E-value=43 Score=29.91 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=24.3
Q ss_pred ceEEEeCCCCcccHHHHHHHCCCC-eEEEEEeChhHHHHHHhh
Q psy3832 201 ERLCNKDPLTLKSADYLSEIFPFA-KFIFMVRDGRATVHSIIS 242 (357)
Q Consensus 201 ~~~~dK~P~~~~~l~~i~~~FP~a-K~I~lvRdP~dv~~S~~~ 242 (357)
..+++=++.. +..+...||+. .+||+.=...+.....+.
T Consensus 96 ~~i~d~~~~g---~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~ 135 (186)
T PRK14737 96 SAIMDIDVQG---AKIIKEKFPERIVTIFIEPPSEEEWEERLI 135 (186)
T ss_pred eEEEEcCHHH---HHHHHHhCCCCeEEEEEECCCHHHHHHHHH
Confidence 3455555433 45567789987 788886544566655543
No 45
>PRK00131 aroK shikimate kinase; Reviewed
Probab=33.52 E-value=45 Score=28.30 Aligned_cols=27 Identities=19% Similarity=0.237 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHhCCCC
Q psy3832 113 MPLIFIGGVPRSGTTLMRAMLDAHPDV 139 (357)
Q Consensus 113 ~p~IfIvG~pRSGTTlL~~lL~~hP~v 139 (357)
.+.|+|+|.|-||-|-++..|+..-.+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~ 30 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 346999999999999999999986543
No 46
>PRK00625 shikimate kinase; Provisional
Probab=32.83 E-value=38 Score=29.96 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.6
Q ss_pred cEEEEcCCCchHHHHHHHHHhCCC
Q psy3832 115 LIFIGGVPRSGTTLMRAMLDAHPD 138 (357)
Q Consensus 115 ~IfIvG~pRSGTTlL~~lL~~hP~ 138 (357)
.|||+|+|-||=|-+.+.|+.+-+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999988754
No 47
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=32.79 E-value=38 Score=28.35 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=16.7
Q ss_pred CcEEEEcCCCch-HHHHHHHHHh
Q psy3832 114 PLIFIGGVPRSG-TTLMRAMLDA 135 (357)
Q Consensus 114 p~IfIvG~pRSG-TTlL~~lL~~ 135 (357)
|.|.|+|.+.+| ||++.+++..
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~ 23 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKT 23 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhc
Confidence 568999999999 6666666543
No 48
>KOG3062|consensus
Probab=31.93 E-value=33 Score=32.32 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=20.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHhC
Q psy3832 113 MPLIFIGGVPRSGTTLMRAMLDAH 136 (357)
Q Consensus 113 ~p~IfIvG~pRSGTTlL~~lL~~h 136 (357)
+|.|+|.|+|.||-|-.+.-|..+
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~ 24 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREA 24 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHH
Confidence 589999999999988877776653
No 49
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=31.77 E-value=47 Score=26.99 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=15.5
Q ss_pred EEEEcCCCch-HHHHHHHHHhC
Q psy3832 116 IFIGGVPRSG-TTLMRAMLDAH 136 (357)
Q Consensus 116 IfIvG~pRSG-TTlL~~lL~~h 136 (357)
|.++|.+.|| ||++.++++..
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999 55566665543
No 50
>PRK03839 putative kinase; Provisional
Probab=31.68 E-value=42 Score=29.19 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.1
Q ss_pred cEEEEcCCCchHHHHHHHHHhCCCC
Q psy3832 115 LIFIGGVPRSGTTLMRAMLDAHPDV 139 (357)
Q Consensus 115 ~IfIvG~pRSGTTlL~~lL~~hP~v 139 (357)
.|+|+|+|-||-|-+.+.|+..-++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999997654
No 51
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=31.47 E-value=41 Score=31.39 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=18.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHh
Q psy3832 113 MPLIFIGGVPRSGTTLMRAMLDA 135 (357)
Q Consensus 113 ~p~IfIvG~pRSGTTlL~~lL~~ 135 (357)
+|.|++.|+|.||-|-+++=|.+
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHH
Confidence 57899999999998877665554
No 52
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=31.41 E-value=45 Score=28.66 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHhCCCC
Q psy3832 114 PLIFIGGVPRSGTTLMRAMLDAHPDV 139 (357)
Q Consensus 114 p~IfIvG~pRSGTTlL~~lL~~hP~v 139 (357)
..|||+|++-||.|-+.+.|+....+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~ 28 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGY 28 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35999999999999999999986543
No 53
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=30.93 E-value=51 Score=34.66 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=25.4
Q ss_pred CCCCCcEEEEcCCCchHHHHHHHHHhCCC
Q psy3832 110 DRFMPLIFIGGVPRSGTTLMRAMLDAHPD 138 (357)
Q Consensus 110 ~~~~p~IfIvG~pRSGTTlL~~lL~~hP~ 138 (357)
+.+.++||++|+|-||-|-+.++|++.-+
T Consensus 3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L~ 31 (542)
T PRK14021 3 PTRRPQAVIIGMMGAGKTRVGKEVAQMMR 31 (542)
T ss_pred CCCCccEEEECCCCCCHHHHHHHHHHHhC
Confidence 45678899999999999999999998654
No 54
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=30.85 E-value=62 Score=28.35 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=21.5
Q ss_pred CCcEEEEcCCCchHHHHHH-HHHhCCCCc
Q psy3832 113 MPLIFIGGVPRSGTTLMRA-MLDAHPDVR 140 (357)
Q Consensus 113 ~p~IfIvG~pRSGTTlL~~-lL~~hP~v~ 140 (357)
..+|+|+|..-||.|-|.. ++..+|+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~ 30 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKF 30 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccccc
Confidence 3579999999999877776 557788643
No 55
>TIGR03795 chp_BMA0021 conserved hypothetical protein, BMA_0021 family. Members of this protein family are found sparsely, mostly in members of the genus Burkholderia. Members often occur as tandem homologous genes, such as BMA_0021 and BMA_0022 in Burkholderia mallei ATCC 23344. The genes regularly are encoded near the so-called docking protein of TOMM (thiazole/oxazole-modified microcins) biosynthetic clusters, suggesting a role in bacteriocin biosynthesis. The function is unknown.
Probab=30.81 E-value=28 Score=28.94 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=34.1
Q ss_pred cchhccCHHHHHHHHHHHhCCCCCccccccchhhhcC------------CcccccccccccCCCCCccc-ccCCCCcccc
Q psy3832 288 LCSKVSEPDDACKSIANALGATNPKCSELQVCEVTYK------------GKQVSISNNTVNVSATPKCS-CDTNGLTAFC 354 (357)
Q Consensus 288 YEDLv~dP~~~l~~I~~FLGL~~~~~~~~~~~e~~~~------------~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~ 354 (357)
=++|++||..++++- +|..+...++....+..-. +.......++..|...++-- +-.--++|||
T Consensus 31 r~eLl~DPk~~L~e~---Fgy~~P~~v~l~v~E~~~d~~~~~~~~~~~~~w~~~~n~i~l~iP~aP~~~~~~a~ALAayn 107 (114)
T TIGR03795 31 KDELLADPVDALEKY---FDYRCPWILDLKVTENSSDWTPYGWGAWTQGRWNLPVNRLTLGIPPAPEHLAEEAIALAAYN 107 (114)
T ss_pred HHHHHHCHHHHHHHH---hCCCCCCceEEEEEecCCCCCccccccccccCCccccCeEEEEcCCCCCccchHHHHHHHHh
Confidence 366779999887776 5555554444444443322 11123334444555555321 1123566777
Q ss_pred ccC
Q psy3832 355 KSH 357 (357)
Q Consensus 355 ~~~ 357 (357)
+.|
T Consensus 108 ~~~ 110 (114)
T TIGR03795 108 DAG 110 (114)
T ss_pred ccC
Confidence 655
No 56
>PF03567 Sulfotransfer_2: Sulfotransferase family; InterPro: IPR005331 This entry consists of a number of carbohydrate sulphotransferases that transfer sulphate to carbohydrate groups in glycoproteins and glycolipids. These include: Carbohydrate sulphotransferases 8 and 9, which transfer sulphate to position 4 of non-reducing N-acetylgalactosamine (GalNAc) residues in both N-glycans and O-glycans []. They function in the biosynthesis of glycoprotein hormones lutropin and thyrotropin, by mediating sulphation of their carbohydrate structures. Carbohydrate sulphotransferase 10, which transfers sulphate to position 3 of the terminal glucuronic acid in both protein- and lipid-linked oligosaccharides []. It directs the biosynthesis of the HNK-1 carbohydrate structure, a sulphated glucuronyl-lactosaminyl residue carried by many neural recognition molecules, which is involved in cell interactions during ontogenetic development and in synaptic plasticity in the adult. Carbohydrate sulphotransferases 11 - 13, which catalyze the transfer of sulphate to position 4 of the GalNAc residue of chondroitin []. Chondroitin sulphate constitutes the predominant proteoglycan present in cartilage and is distributed on the surfaces of many cells and extracellular matrices. Some, thought not all, of these enzymes also transfer sulphate to dermatan. Carbohydrate sulphotransferase D4ST1, which transfers sulphate to position 4 of the GalNAc residue of dermatan sulphate []. Heparan sulphate 2-O-sulphotransferase (HS2ST). Heparan sulphate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development []. Heparan-sulphate 6-O-sulphotransferase (HS6ST), which catalyses the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate []. Chondroitin 6-sulphotransferase catalyses the transfer of sulphate to position 6 of the N-acetylgalactosamine residue of chondroitin []. ; GO: 0008146 sulfotransferase activity, 0016021 integral to membrane; PDB: 3F5F_A.
Probab=30.70 E-value=42 Score=30.05 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=17.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHhCCC
Q psy3832 114 PLIFIGGVPRSGTTLMRAMLDAHPD 138 (357)
Q Consensus 114 p~IfIvG~pRSGTTlL~~lL~~hP~ 138 (357)
..|+.+-.||+|+|-+..+|..+-.
T Consensus 9 ~~i~f~~ipK~g~Ts~~~~l~~~~~ 33 (253)
T PF03567_consen 9 HKIIFCHIPKTGGTSLKSILRRLYG 33 (253)
T ss_dssp -EEEE---SSSSHHHHHHHHHHHHH
T ss_pred CcEEEEecCCHHHHHHHHHHHHHhh
Confidence 3588899999999999999997543
No 57
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=30.43 E-value=44 Score=27.90 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=15.0
Q ss_pred EEEEcCCCch-HHHHHHHHHh
Q psy3832 116 IFIGGVPRSG-TTLMRAMLDA 135 (357)
Q Consensus 116 IfIvG~pRSG-TTlL~~lL~~ 135 (357)
|.|+|.+.+| ||++.++++.
T Consensus 3 i~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 7899999999 5555665544
No 58
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=29.60 E-value=47 Score=29.75 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=19.1
Q ss_pred cEEEEcCCCch-HHHHHHHHHhCC
Q psy3832 115 LIFIGGVPRSG-TTLMRAMLDAHP 137 (357)
Q Consensus 115 ~IfIvG~pRSG-TTlL~~lL~~hP 137 (357)
.|.|+|.+-|| ||++..++...+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 58999999999 888887777654
No 59
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=29.53 E-value=3.3e+02 Score=22.66 Aligned_cols=113 Identities=14% Similarity=0.025 Sum_probs=53.5
Q ss_pred EEcCCCchHHHHHHHHHhCCCCccCCCCCchHHHHHhhH-hhhhhhhhhhhhhhhh-ccC--CCHHHHHHHHHHHHHHHH
Q psy3832 118 IGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQ-HWIRSQKECQVYLISC-TCQ--VYLIVINAAIAAFCLEVI 193 (357)
Q Consensus 118 IvG~pRSGTTlL~~lL~~hP~v~~~~E~~~l~~~~~~~~-~w~~~~~e~~~~L~~~-~~~--~~~~~l~~~~~~~~l~~i 193 (357)
|+|.|.||-|-+...|+..-++.... ...+++... ...... . .+.++ ..| ++++.+-..+.. .+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is----~~~llr~~~~~~s~~g-~---~i~~~l~~g~~vp~~~v~~ll~~----~l 68 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHIS----VGDLLREEIKSDSELG-K---QIQEYLDNGELVPDELVIELLKE----RL 68 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEE----HHHHHHHHHHTTSHHH-H---HHHHHHHTTSS--HHHHHHHHHH----HH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceec----hHHHHHHHHhhhhHHH-H---HHHHHHHhhccchHHHHHHHHHH----HH
Confidence 78999999999999999865432221 122222100 000000 0 11111 122 223333222222 23
Q ss_pred HhcCCCCceEEEeCCCCcccHHHHHH----HCCCCeEEEEEeChhHHHHHHhh
Q psy3832 194 ARHGEPAERLCNKDPLTLKSADYLSE----IFPFAKFIFMVRDGRATVHSIIS 242 (357)
Q Consensus 194 ~~~~~~~~~~~dK~P~~~~~l~~i~~----~FP~aK~I~lvRdP~dv~~S~~~ 242 (357)
........++++--|.+...+..+.. ..-....++..-=|.+++...+.
T Consensus 69 ~~~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~ 121 (151)
T PF00406_consen 69 EQPPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLS 121 (151)
T ss_dssp HSGGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHH
T ss_pred hhhcccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhcc
Confidence 32223356778999999988777776 33233334444555565555443
No 60
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=29.38 E-value=58 Score=28.74 Aligned_cols=25 Identities=44% Similarity=0.539 Sum_probs=19.8
Q ss_pred CCcEEEEcCCCch-HHHHHHHHHhCC
Q psy3832 113 MPLIFIGGVPRSG-TTLMRAMLDAHP 137 (357)
Q Consensus 113 ~p~IfIvG~pRSG-TTlL~~lL~~hP 137 (357)
...+.|+|...|| ||++..+++..|
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4579999999999 777777777655
No 61
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=28.93 E-value=51 Score=30.76 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.2
Q ss_pred cEEEEcCCCchHHHHHHHHHhCCC
Q psy3832 115 LIFIGGVPRSGTTLMRAMLDAHPD 138 (357)
Q Consensus 115 ~IfIvG~pRSGTTlL~~lL~~hP~ 138 (357)
.|.|+|.|+||-+.+++++..+-.
T Consensus 2 iI~i~G~~gsGKstva~~~~~~g~ 25 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIENYN 25 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999987643
No 62
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=28.59 E-value=66 Score=21.22 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=14.7
Q ss_pred eehHHHHHHHHHHHHHHHh
Q psy3832 56 TVFLTVILVLCIFLMYKLH 74 (357)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~ 74 (357)
.+-++||++|.++.-|++.
T Consensus 18 ~F~l~mi~vFi~li~ytl~ 36 (38)
T PF09125_consen 18 AFALAMILVFIALIGYTLA 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4557888998888888874
No 63
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=28.12 E-value=46 Score=26.48 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEEcCCCchHHHHHHHHHhCC
Q psy3832 116 IFIGGVPRSGTTLMRAMLDAHP 137 (357)
Q Consensus 116 IfIvG~pRSGTTlL~~lL~~hP 137 (357)
|+|.|.+.||=|-+.+.|..+-
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999888888864
No 64
>KOG2130|consensus
Probab=27.99 E-value=30 Score=33.88 Aligned_cols=13 Identities=46% Similarity=0.774 Sum_probs=11.3
Q ss_pred EEEEcCCCchHHH
Q psy3832 116 IFIGGVPRSGTTL 128 (357)
Q Consensus 116 IfIvG~pRSGTTl 128 (357)
-||+|.+||||.+
T Consensus 182 WfvmGParSGtsi 194 (407)
T KOG2130|consen 182 WFVMGPARSGTSI 194 (407)
T ss_pred eEEecCCCCCcee
Confidence 7999999999753
No 65
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=27.98 E-value=53 Score=27.44 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=15.5
Q ss_pred EEEEcCCCch-HHHHHHHHHh
Q psy3832 116 IFIGGVPRSG-TTLMRAMLDA 135 (357)
Q Consensus 116 IfIvG~pRSG-TTlL~~lL~~ 135 (357)
|.|+|.+.+| ||++.+++..
T Consensus 3 i~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 7899999999 6666666653
No 66
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=27.88 E-value=56 Score=23.93 Aligned_cols=30 Identities=27% Similarity=0.273 Sum_probs=23.2
Q ss_pred cEEEEcCCCchHHHHHHHHHhC---CCCccCCC
Q psy3832 115 LIFIGGVPRSGTTLMRAMLDAH---PDVRCGQE 144 (357)
Q Consensus 115 ~IfIvG~pRSGTTlL~~lL~~h---P~v~~~~E 144 (357)
.|+|.|.+-||-|-+.+.|... .++....|
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 3789999999999999999886 44444444
No 67
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=27.77 E-value=64 Score=28.29 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=27.2
Q ss_pred cEEEEcCCCchHHHHHHHHHhCCCCccCCCCC
Q psy3832 115 LIFIGGVPRSGTTLMRAMLDAHPDVRCGQETR 146 (357)
Q Consensus 115 ~IfIvG~pRSGTTlL~~lL~~hP~v~~~~E~~ 146 (357)
+|.|-|...||-|-+.+.|.++..+....|+.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~ 32 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPV 32 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccccccc
Confidence 48899999999999999999977776677773
No 68
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=26.91 E-value=54 Score=31.66 Aligned_cols=26 Identities=35% Similarity=0.358 Sum_probs=21.1
Q ss_pred CCcEEEEcCCCch-HHHHHHHHHhCCC
Q psy3832 113 MPLIFIGGVPRSG-TTLMRAMLDAHPD 138 (357)
Q Consensus 113 ~p~IfIvG~pRSG-TTlL~~lL~~hP~ 138 (357)
...|+|+|.+-|| ||++..+++..|.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 3469999999999 8888888877543
No 69
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=26.64 E-value=61 Score=28.03 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=19.2
Q ss_pred CCCCcEEEEcCCCch-HHHHHHHHHh
Q psy3832 111 RFMPLIFIGGVPRSG-TTLMRAMLDA 135 (357)
Q Consensus 111 ~~~p~IfIvG~pRSG-TTlL~~lL~~ 135 (357)
...+-|.|+|.+.+| ||++.++++.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 455679999999999 6666666654
No 70
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=26.55 E-value=39 Score=27.13 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=10.0
Q ss_pred CceeehHHHHHHHH
Q psy3832 53 TRRTVFLTVILVLC 66 (357)
Q Consensus 53 ~~~~~~~~~~~~~~ 66 (357)
||..+||+++|.++
T Consensus 3 SK~~llL~l~LA~l 16 (95)
T PF07172_consen 3 SKAFLLLGLLLAAL 16 (95)
T ss_pred hhHHHHHHHHHHHH
Confidence 77777777766665
No 71
>PRK06620 hypothetical protein; Validated
Probab=26.01 E-value=74 Score=29.05 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=25.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHhCCCCccCC
Q psy3832 114 PLIFIGGVPRSGTTLMRAMLDAHPDVRCGQ 143 (357)
Q Consensus 114 p~IfIvG~pRSGTTlL~~lL~~hP~v~~~~ 143 (357)
+++||.|.+-||=|.|.+++...++.....
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 569999999999999999999888754433
No 72
>PRK06217 hypothetical protein; Validated
Probab=25.90 E-value=66 Score=28.18 Aligned_cols=24 Identities=42% Similarity=0.465 Sum_probs=21.5
Q ss_pred cEEEEcCCCchHHHHHHHHHhCCC
Q psy3832 115 LIFIGGVPRSGTTLMRAMLDAHPD 138 (357)
Q Consensus 115 ~IfIvG~pRSGTTlL~~lL~~hP~ 138 (357)
-|+|+|.+-||-|-+.+.|++.-+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 399999999999999999998654
No 73
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=25.66 E-value=56 Score=27.13 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=16.0
Q ss_pred cEEEEcCCCch-HHHHHHHHHh
Q psy3832 115 LIFIGGVPRSG-TTLMRAMLDA 135 (357)
Q Consensus 115 ~IfIvG~pRSG-TTlL~~lL~~ 135 (357)
-|.|+|.+.+| ||++.++++.
T Consensus 4 ~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 4 RIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred EEEEEcCCCCCHHHHHHHHhCc
Confidence 48999999999 6666666554
No 74
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=25.63 E-value=82 Score=24.55 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=19.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHhC
Q psy3832 114 PLIFIGGVPRSGTTLMRAMLDAH 136 (357)
Q Consensus 114 p~IfIvG~pRSGTTlL~~lL~~h 136 (357)
+.++|+|.|-||-|.+.+.|..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 46899999999988888877664
No 75
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=25.60 E-value=66 Score=28.30 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=19.7
Q ss_pred cEEEEcCCCchHHHHHHHHHhC
Q psy3832 115 LIFIGGVPRSGTTLMRAMLDAH 136 (357)
Q Consensus 115 ~IfIvG~pRSGTTlL~~lL~~h 136 (357)
.++|.|.|+||=|-+...|...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 5899999999999999988765
No 76
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=25.01 E-value=57 Score=30.47 Aligned_cols=27 Identities=41% Similarity=0.539 Sum_probs=21.5
Q ss_pred CCcEEEEcCCCch-HHHHHHHHHhCCCC
Q psy3832 113 MPLIFIGGVPRSG-TTLMRAMLDAHPDV 139 (357)
Q Consensus 113 ~p~IfIvG~pRSG-TTlL~~lL~~hP~v 139 (357)
...|+|+|.+.|| ||+|..+|...|.-
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred ceEEEEECCCccccchHHHHHhhhcccc
Confidence 4579999999999 67778888877654
No 77
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=24.92 E-value=65 Score=31.92 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=21.4
Q ss_pred CCCcEEEEcCCCch-HHHHHHHHHhCCC
Q psy3832 112 FMPLIFIGGVPRSG-TTLMRAMLDAHPD 138 (357)
Q Consensus 112 ~~p~IfIvG~pRSG-TTlL~~lL~~hP~ 138 (357)
....|+|+|..-|| ||++..+++..|.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCC
Confidence 34569999999999 8888888876553
No 78
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=24.33 E-value=73 Score=31.31 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=20.7
Q ss_pred CCCcEEEEcCCCch-HHHHHHHHHhCCC
Q psy3832 112 FMPLIFIGGVPRSG-TTLMRAMLDAHPD 138 (357)
Q Consensus 112 ~~p~IfIvG~pRSG-TTlL~~lL~~hP~ 138 (357)
....|+|+|.+.|| ||+|..+++..|.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 34569999999999 6677777777664
No 79
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=24.01 E-value=69 Score=27.06 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=14.9
Q ss_pred EEEEcCCCch-HHHHHHHHHh
Q psy3832 116 IFIGGVPRSG-TTLMRAMLDA 135 (357)
Q Consensus 116 IfIvG~pRSG-TTlL~~lL~~ 135 (357)
|.|+|.+.+| ||++.+++..
T Consensus 3 i~i~G~~~~GKTsl~~~~~~~ 23 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYAND 23 (174)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 7899999999 5565555543
No 80
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=23.97 E-value=68 Score=26.58 Aligned_cols=20 Identities=10% Similarity=0.303 Sum_probs=14.9
Q ss_pred EEEEcCCCch-HHHHHHHHHh
Q psy3832 116 IFIGGVPRSG-TTLMRAMLDA 135 (357)
Q Consensus 116 IfIvG~pRSG-TTlL~~lL~~ 135 (357)
|+|+|.+.+| ||++.++++.
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 7899999999 5555555554
No 81
>PRK13948 shikimate kinase; Provisional
Probab=23.75 E-value=84 Score=28.04 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=23.0
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHhCCC
Q psy3832 112 FMPLIFIGGVPRSGTTLMRAMLDAHPD 138 (357)
Q Consensus 112 ~~p~IfIvG~pRSGTTlL~~lL~~hP~ 138 (357)
....|+++|++-||=|-+.+.|+.+-+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 445699999999999999999998643
No 82
>PRK09087 hypothetical protein; Validated
Probab=22.86 E-value=86 Score=28.86 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHhCCCC
Q psy3832 113 MPLIFIGGVPRSGTTLMRAMLDAHPDV 139 (357)
Q Consensus 113 ~p~IfIvG~pRSGTTlL~~lL~~hP~v 139 (357)
.|+++|.|.+.||=|-|.+++.....+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~ 70 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDA 70 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCC
Confidence 467999999999999999988876554
No 83
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=22.74 E-value=88 Score=24.74 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=20.7
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHhC
Q psy3832 112 FMPLIFIGGVPRSGTTLMRAMLDAH 136 (357)
Q Consensus 112 ~~p~IfIvG~pRSGTTlL~~lL~~h 136 (357)
..+.++|.|.|.+|=|.+.+.+..+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999988888888764
No 84
>KOG3347|consensus
Probab=22.70 E-value=78 Score=28.01 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=24.8
Q ss_pred CCCCcEEEEcCCCchHHHHHHHHHhCCCC
Q psy3832 111 RFMPLIFIGGVPRSGTTLMRAMLDAHPDV 139 (357)
Q Consensus 111 ~~~p~IfIvG~pRSGTTlL~~lL~~hP~v 139 (357)
+.+|.|+|.|.|-+|-|-+.+-|+.--++
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~ 33 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGL 33 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCC
Confidence 56789999999999999999999875443
No 85
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=22.36 E-value=79 Score=26.72 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=16.0
Q ss_pred EEEEcCCCch-HHHHHHHHHh
Q psy3832 116 IFIGGVPRSG-TTLMRAMLDA 135 (357)
Q Consensus 116 IfIvG~pRSG-TTlL~~lL~~ 135 (357)
|.|+|.+.+| ||++.+++..
T Consensus 6 i~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 6 LLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 8999999999 6666666654
No 86
>COG1084 Predicted GTPase [General function prediction only]
Probab=22.27 E-value=1e+02 Score=30.53 Aligned_cols=34 Identities=32% Similarity=0.572 Sum_probs=28.2
Q ss_pred CCCCCcEEEEcCCCch-HHHHHHHHHhCCCCccCC
Q psy3832 110 DRFMPLIFIGGVPRSG-TTLMRAMLDAHPDVRCGQ 143 (357)
Q Consensus 110 ~~~~p~IfIvG~pRSG-TTlL~~lL~~hP~v~~~~ 143 (357)
+...|.|+|.|+|-.| ||+|..+=.+.|+|.-.+
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YP 199 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYP 199 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCC
Confidence 4577889999999999 788888888899986543
No 87
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=22.20 E-value=81 Score=30.85 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=19.7
Q ss_pred CCCcEEEEcCCCch-HHHHHHHHHh
Q psy3832 112 FMPLIFIGGVPRSG-TTLMRAMLDA 135 (357)
Q Consensus 112 ~~p~IfIvG~pRSG-TTlL~~lL~~ 135 (357)
....|+|+|.+-|| ||++..++..
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHh
Confidence 44579999999999 8888888875
No 88
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=22.02 E-value=83 Score=30.35 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=20.7
Q ss_pred CCCcEEEEcCCCch-HHHHHHHHHhCCC
Q psy3832 112 FMPLIFIGGVPRSG-TTLMRAMLDAHPD 138 (357)
Q Consensus 112 ~~p~IfIvG~pRSG-TTlL~~lL~~hP~ 138 (357)
....+.|+|...|| ||++..+++..|.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCc
Confidence 34579999999999 7777777776653
No 89
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=21.94 E-value=96 Score=25.86 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.5
Q ss_pred cEEEEcCCCchHHHHHHHHHhCCCCc
Q psy3832 115 LIFIGGVPRSGTTLMRAMLDAHPDVR 140 (357)
Q Consensus 115 ~IfIvG~pRSGTTlL~~lL~~hP~v~ 140 (357)
+|+|.|.|-||=|-+.+.|.+..++.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~ 26 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAP 26 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCE
Confidence 48999999999999999999976643
No 90
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=21.88 E-value=3.3e+02 Score=24.07 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEcCCCchHHHHHHHHHhC
Q psy3832 116 IFIGGVPRSGTTLMRAMLDAH 136 (357)
Q Consensus 116 IfIvG~pRSGTTlL~~lL~~h 136 (357)
|+|+|.|-||.|=+++.|++.
T Consensus 3 iiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999997
No 91
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=21.86 E-value=86 Score=27.58 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=18.9
Q ss_pred cEEEEcCCCchHHHHHHHHHhC
Q psy3832 115 LIFIGGVPRSGTTLMRAMLDAH 136 (357)
Q Consensus 115 ~IfIvG~pRSGTTlL~~lL~~h 136 (357)
+++|.|.+|||-|.+..-+...
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~ 22 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE 22 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 4799999999999998888654
No 92
>PF13173 AAA_14: AAA domain
Probab=21.82 E-value=94 Score=25.44 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=18.1
Q ss_pred CCCcEEEEcCCCchHHH-HHHHHHhC
Q psy3832 112 FMPLIFIGGVPRSGTTL-MRAMLDAH 136 (357)
Q Consensus 112 ~~p~IfIvG~pRSGTTl-L~~lL~~h 136 (357)
+.+.++|.|..|+|=|- +.+++...
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999554 44555554
No 93
>PRK13946 shikimate kinase; Provisional
Probab=21.73 E-value=86 Score=27.57 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=21.7
Q ss_pred cEEEEcCCCchHHHHHHHHHhCCC
Q psy3832 115 LIFIGGVPRSGTTLMRAMLDAHPD 138 (357)
Q Consensus 115 ~IfIvG~pRSGTTlL~~lL~~hP~ 138 (357)
.|+++|++-||-|-+.+.|+..-+
T Consensus 12 ~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 12 TVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 599999999999999999998654
No 94
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=21.38 E-value=90 Score=27.48 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.8
Q ss_pred cEEEEcCCCchHHHHHHHHHhC
Q psy3832 115 LIFIGGVPRSGTTLMRAMLDAH 136 (357)
Q Consensus 115 ~IfIvG~pRSGTTlL~~lL~~h 136 (357)
.|.|.|.+.||-|.|.+.|...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999876
No 95
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=21.02 E-value=63 Score=28.98 Aligned_cols=29 Identities=24% Similarity=0.293 Sum_probs=21.2
Q ss_pred CCcCCCCCcEEEEcCCCch-HHHHHHHHHh
Q psy3832 107 YRYDRFMPLIFIGGVPRSG-TTLMRAMLDA 135 (357)
Q Consensus 107 ~~~~~~~p~IfIvG~pRSG-TTlL~~lL~~ 135 (357)
..+....|.|.++|++-|| ||++.+++.+
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3444457789999999999 5667777766
No 96
>PHA02831 EEV host range protein; Provisional
Probab=20.60 E-value=76 Score=30.36 Aligned_cols=30 Identities=20% Similarity=0.408 Sum_probs=15.1
Q ss_pred ccCCceeehHHHHHHHHHHHHH------HHhcccCCCC
Q psy3832 50 NRGTRRTVFLTVILVLCIFLMY------KLHTCSDRTG 81 (357)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 81 (357)
.+++ ++|.++||+..++||+ .++.|..+.-
T Consensus 225 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (268)
T PHA02831 225 NMQQ--NIITIIILLSIICFIFVLGLIALFLSCNKSTL 260 (268)
T ss_pred cccc--ceEeehhHHHHHHHHHHHHHHHHhhccccccc
Confidence 3444 4444455444444444 3666765544
No 97
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=20.47 E-value=95 Score=28.04 Aligned_cols=25 Identities=32% Similarity=0.707 Sum_probs=21.9
Q ss_pred cEEEEcCCCchHHHHHHHHHhCCCC
Q psy3832 115 LIFIGGVPRSGTTLMRAMLDAHPDV 139 (357)
Q Consensus 115 ~IfIvG~pRSGTTlL~~lL~~hP~v 139 (357)
.|+|.|.|-||.|-+.+.|...-++
T Consensus 5 ~i~i~G~~G~GKst~a~~l~~~~~~ 29 (197)
T PRK12339 5 IHFIGGIPGVGKTSISGYIARHRAI 29 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 6999999999999999999886544
No 98
>PRK01184 hypothetical protein; Provisional
Probab=20.47 E-value=1e+02 Score=26.75 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=18.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHhC
Q psy3832 114 PLIFIGGVPRSGTTLMRAMLDAH 136 (357)
Q Consensus 114 p~IfIvG~pRSGTTlL~~lL~~h 136 (357)
..|+|+|.|.||-|-+..++...
T Consensus 2 ~~i~l~G~~GsGKsT~a~~~~~~ 24 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSKIAREM 24 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHHc
Confidence 46899999999988888866543
No 99
>PHA03105 EEV glycoprotein; Provisional
Probab=20.44 E-value=67 Score=28.26 Aligned_cols=30 Identities=20% Similarity=0.514 Sum_probs=24.2
Q ss_pred CCceeehHHHHHHHHHHHHHHHhcccCCCC
Q psy3832 52 GTRRTVFLTVILVLCIFLMYKLHTCSDRTG 81 (357)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (357)
++...+...|.|++++|+.|.|+.|.+...
T Consensus 2 ~~~iv~Y~vv~~SfiiLi~Yll~i~K~~iK 31 (188)
T PHA03105 2 GIVIVVYVVVPLSFIVLILYIFFICKNTIK 31 (188)
T ss_pred ceEEEEeeehHHHHHHHHHHHHHHHHHHHH
Confidence 445667788999999999999998877655
No 100
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=20.33 E-value=93 Score=25.77 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=14.7
Q ss_pred EEEEcCCCch-HHHHHHHHH
Q psy3832 116 IFIGGVPRSG-TTLMRAMLD 134 (357)
Q Consensus 116 IfIvG~pRSG-TTlL~~lL~ 134 (357)
|.|+|.+-+| ||++.+++.
T Consensus 4 i~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 4 VVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 8899999999 555566664
No 101
>PRK12338 hypothetical protein; Provisional
Probab=20.24 E-value=1.1e+02 Score=30.06 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=29.1
Q ss_pred cEEEEcCCCchHHHHHHHHHhCCCCccCCCCCchHHH
Q psy3832 115 LIFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRI 151 (357)
Q Consensus 115 ~IfIvG~pRSGTTlL~~lL~~hP~v~~~~E~~~l~~~ 151 (357)
.|+|.|.|-||.|-++..|+..-.+.....+.++..+
T Consensus 6 ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~ 42 (319)
T PRK12338 6 VILIGSASGIGKSTIASELARTLNIKHLIETDFIREV 42 (319)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHH
Confidence 6889999999999999999998776655455554443
Done!