RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3832
(357 letters)
>gnl|CDD|222153 pfam13469, Sulfotransfer_3, Sulfotransferase family.
Length = 172
Score = 41.2 bits (94), Expect = 2e-04
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 114 PLIFIGGVPRSGTTLM-RAMLDAHPDVRCGQETRIIPRILQMRQHW 158
+F+ G+PRSGTTL+ A+LD HP E L
Sbjct: 1 RPVFVLGLPRSGTTLLAAALLDLHPAELGLLELLEPLLALAGAGFT 46
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are approximately 90 amino acids in
length. There are two completely conserved L residues
that may be functionally important.
Length = 70
Score = 32.7 bits (75), Expect = 0.035
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 1 MEEEEKKKEEVEREEIPDEVKEGRRRKSGERIGEEDNED 39
++ EE+K+EE E +E KE + KS E + E D
Sbjct: 29 LKAEEEKREEEEEARKREERKEREKNKSFEELLNESELD 67
>gnl|CDD|183172 PRK11517, PRK11517, transcriptional regulatory protein YedW;
Provisional.
Length = 223
Score = 32.9 bits (75), Expect = 0.16
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 209 LTLKSADYLSEIFPFAKFIFMVRDGRATVHSIISRKVTITGFDLESYRQCLKKWNEAISI 268
L + DYL + F F++ + VR + H ++ + I+G ++S Q + + N +I++
Sbjct: 90 LDSGANDYLVKPFSFSELLARVR-AQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITL 148
>gnl|CDD|216059 pfam00685, Sulfotransfer_1, Sulfotransferase domain.
Length = 254
Score = 33.1 bits (76), Expect = 0.17
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 116 IFIGGVPRSGTTLMRAMLDAHPDVR 140
+ I P+SGTT ++ +L P+
Sbjct: 4 VLIVTYPKSGTTWLQEILSLIPNRG 28
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein
7 (Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal
RNA recognition motif (RRM), also termed RBD (RNA
binding domain) or RNP (ribonucleoprotein domain), and
a C-terminal RRP7 domain.
Length = 118
Score = 31.5 bits (72), Expect = 0.21
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 2 EEEEKKKEEVEREEIPDE------VKEGRRRKSGERIGEEDNEDDKV 42
EEE+K+E E PDE + GR+ K+ E +K
Sbjct: 33 REEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKE 79
>gnl|CDD|188159 TIGR01633, phi3626_gp14_N, putative phage tail component,
N-terminal domain. This model represents the
best-conserved region of about 125 amino acids, toward
the N-terminus, of a family of proteins from temperate
phage of a number of Gram-positive bacteria. These phage
proteins range in length from 230 to 525 amino acids
[Mobile and extrachromosomal element functions, Prophage
functions].
Length = 124
Score = 30.4 bits (69), Expect = 0.56
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 232 DGRATVHSIISRKVTITGFDLESYRQCLKKW---NEAISIIFGDEADRT 277
A ++ + I DL + L W E + +IF DE D+T
Sbjct: 44 KLGARELTVPVKINDIDPRDLRERFRELAGWLNRQEPVPLIFSDEPDKT 92
>gnl|CDD|197314 cd09080, TDP2, Phosphodiesterase domain of human TDP2, a 5'-tyrosyl
DNA phosphodiesterase, and related domains. Human TDP2,
also known as TTRAP (TRAF/TNFR-associated factors, and
tumor necrosis factor receptor/TNFR-associated protein),
is a 5'-tyrosyl DNA phosphodiesterase. It is required
for the efficient repair of topoisomerase II-induced DNA
double strand breaks. The topoisomerase is covalently
linked by a phosphotyrosyl bond to the 5'-terminus of
the break. TDP2 cleaves the DNA 5'-phosphodiester bond
and restores 5'-phosphate termini, needed for subsequent
DNA ligation, and hence repair of the break. TDP2 and
3'-tyrosyl DNA phosphodiesterase (TDP1) are
complementary activities; together, they allow cells to
remove trapped topoisomerase from both 3'- and 5'-DNA
termini. TTRAP has been reported as being involved in
apoptosis, embryonic development, and transcriptional
regulation, and it may inhibit the activation of nuclear
factor-kB. This family belongs to the large EEP
(exonuclease/endonuclease/phosphatase) superfamily that
contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds.
Length = 248
Score = 30.8 bits (70), Expect = 0.95
Identities = 31/163 (19%), Positives = 49/163 (30%), Gaps = 50/163 (30%)
Query: 128 LMRAMLDAHPDVRCGQETRIIPRILQM--RQHWIRSQKECQVYLISCTCQVYLIVINAAI 185
+++ + + PDV QE + P L Q W+R Y S
Sbjct: 23 ILKLLEELDPDVIFLQE--VTPPFLAYLLSQPWVRKN-----YYFSE------------- 62
Query: 186 AAFCLEVIARHGEPAERLCNKDPLTLKSADYLSEIFPFAKFIFMVRDG-RATVHSIISRK 244
G P+ + L L + PF M R+ A ++
Sbjct: 63 -----------GPPSPAVDPYGVLILSKKSLVVRRVPFTS-TRMGRNLLAAEINLGSGEP 110
Query: 245 VTITGFDLESYRQC--------------LKKWNEAISIIF-GD 272
+ + LES + LKK A ++I GD
Sbjct: 111 LRLATTHLESLKSHSSERTAQLEEIAKKLKKPPGAANVILGGD 153
>gnl|CDD|180565 PRK06450, PRK06450, threonine synthase; Validated.
Length = 338
Score = 30.5 bits (69), Expect = 1.4
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 288 LCSKVS----EPDDACKSIANALGATNPKCSELQVCEVTYKGKQVSISNNTV 335
LC+K P D SIA+AL +T P + V ++ G+ + +S+N +
Sbjct: 242 LCAKFKGISYTPPDKVTSIADALVSTRPFLLDYMVKALSEYGECIVVSDNEI 293
>gnl|CDD|233129 TIGR00796, livcs, branched-chain amino acid uptake carrier. The
Branched Chain Amino Acid:Cation Symporter (LIVCS)
Family (TC 2.A.26) Characterized members of this family
transport all three of the branched chain aliphatic
amino acids (leucine (L), isoleucine (I) and valine
(V)). They function by a Na+ or H+ symport mechanism and
display 12 putative transmembrane helical spanners
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 378
Score = 30.4 bits (69), Expect = 1.5
Identities = 6/41 (14%), Positives = 12/41 (29%)
Query: 46 IGRMNRGTRRTVFLTVILVLCIFLMYKLHTCSDRTGSIMLP 86
+ +F + + + L DR G + P
Sbjct: 102 LHSPTSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTP 142
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family.
Prothymosin alpha and parathymosin are two ubiquitous
small acidic nuclear proteins that are thought to be
involved in cell cycle progression, proliferation, and
cell differentiation.
Length = 106
Score = 28.8 bits (64), Expect = 1.7
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 2 EEEEKKKEEVEREEIPDEVKEGRRRKSGERIGEEDNED 39
++EE++ E E E +E EG +G+R E++ +D
Sbjct: 60 DDEEEEGEGEEEEGEEEEETEG---ATGKRAAEDEEDD 94
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 30.0 bits (68), Expect = 2.2
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 3 EEEKKKEEVEREEIPDEVKEGR-RRKSGERIGEEDNEDDKVSND 45
EEE KEE ER + +++ R RR GE +E+ ED K S D
Sbjct: 260 EEELAKEEAERLK---KLEAERLRRMRGEEEDDEEEEDSKESAD 300
>gnl|CDD|234166 TIGR03310, matur_ygfJ, molybdenum hydroxylase accessory protein,
YgfJ family. Members of this protein family are
probable accessory proteins for the biosynthesis of
enzymes related to xanthine dehydrogenase. Comparative
genomics suggests a role in the maturation of
selenium-dependent molybdenum hydroxylases, although a
tenuous alternative hypothesis is a role for this
protein (with a requirement for SelD, the selenium donor
protein in the selenocysteine and selenouridine
biosynthesis pathways) metabolizing a
selenium-containing substrate such as selenate.
Length = 188
Score = 29.2 bits (66), Expect = 2.4
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 180 VINAAIAAFCLEVIA----RHGEPAERLCNKDPLTL 211
V++ A+ F EVI E L N +TL
Sbjct: 31 VVDNALRLFFDEVILVLGHEADELVALLANHSNITL 66
>gnl|CDD|235019 PRK02259, PRK02259, aspartoacylase; Provisional.
Length = 288
Score = 29.5 bits (67), Expect = 2.5
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 203 LCNKDPLTLKSADYLSEIFPFAKFIF 228
L + P L A YL P ++
Sbjct: 116 LYGRRPFDLALAAYLQSRLPLPIYLH 141
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 29.7 bits (66), Expect = 2.9
Identities = 12/54 (22%), Positives = 23/54 (42%)
Query: 2 EEEEKKKEEVEREEIPDEVKEGRRRKSGERIGEEDNEDDKVSNDIGRMNRGTRR 55
EE K +E ++ E + +E R+ + + E +D +I R R+
Sbjct: 1112 EEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARK 1165
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 29.7 bits (66), Expect = 3.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 2 EEEEKKKEEVEREEIPDEVKEGRRRKSGER 31
E E+K +EE ERE+ ++ +E R + ER
Sbjct: 591 EAEQKAREEREREKEKEKEREREREREAER 620
>gnl|CDD|215916 pfam00431, CUB, CUB domain.
Length = 110
Score = 27.7 bits (62), Expect = 4.5
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 244 KVTITGFDLESYRQCLKKWNEAISIIFGDEADRT---KLCGVPKP 285
+T FDLE + +C + + I G + + CG P
Sbjct: 40 SLTFQDFDLEDHDEC---GYDYVEIRDGLPSSSPLLGRFCGSGPP 81
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 28.9 bits (65), Expect = 5.2
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 1 MEEEEKKKEEVEREEIPDEVKEGRRRKSGERIGEEDNEDDKVSNDI 46
M+ E +K+E EI + +E + + E+ V
Sbjct: 379 MQRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRK 424
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is presumably
controlled by tissue-specific microtubule-associated
proteins (MAPs). The 115-kDa epithelial MAP
(E-MAP-115/MAP7) has been identified as a
microtubule-stabilising protein predominantly expressed
in cell lines of epithelial origin. The binding of this
microtubule associated protein is nucleotide
independent.
Length = 171
Score = 28.1 bits (62), Expect = 5.2
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 3 EEEKKKEEVEREEIPDEVKEGRRRKSGERIGEEDNEDDKVSNDIGRMNRGTRRTVFL 59
EEE+ +E+ E+ + E +E + ++ ERI ++ E + + + R R F
Sbjct: 79 EEERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAERMRLEREKHFQ 135
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 28.6 bits (64), Expect = 5.8
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 1 MEEEEKKKEEVEREEIPDEVKEGRRRKSGERIGEEDNEDDKVSNDIGRMNRGTRRTV 57
ME+E++ +E E P E E + +++ E ++V+ R RR V
Sbjct: 302 MEDEDEDEEMEIVPESPVEE-EESEEPEPPPLPKKEEEKEEVTVSPDGGRRRGRRRV 357
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM).
This family consists of several Plasmodium falciparum
SPAM (secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the
alanine heptad-repeat domain. Heptad repeats in which
the a and d position contain hydrophobic residues
generate amphipathic alpha-helices which give rise to
helical bundles or coiled-coil structures in proteins.
SPAM is an example of a P. falciparum antigen in which
a repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 27.5 bits (61), Expect = 6.9
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 7/41 (17%)
Query: 2 EEEEKKKEEVEREEIPDEVKEGRRRKSGERIGEEDNEDDKV 42
EE+E++ EE E E +E+ E + EE++E+D V
Sbjct: 56 EEDEEEIEEPEDIEDEEEIVE-------DEEEEEEDEEDNV 89
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 28.3 bits (64), Expect = 6.9
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 2 EEEEKKKEEVEREEIPDEVKEGRRRKSGERIGEEDNEDDKVSNDIGRMNRGTRRTVF 58
EEE+K+K++ E +E ++ E EE+ E+ + + + + T+F
Sbjct: 424 EEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQATLF 480
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The
family functions as a highly conserved exonuclease that
is required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing
and export.
Length = 134
Score = 27.3 bits (61), Expect = 7.3
Identities = 10/53 (18%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 1 MEEEEKKKEEVEREEIPDEVKEG------RRRKSGERIGEEDNEDDKVSNDIG 47
+E+E+++ ER+ I +E K+ R+++ + + EE+++++ +
Sbjct: 42 AKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEEDAETEDT 94
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 27.2 bits (61), Expect = 7.9
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 2 EEEEKKKEEVEREEIPDE------VKEGRRRKSG 29
+ EE+ KEE + PDE + GR+RK+G
Sbjct: 32 KREEEAKEEAKARSEPDEDGWTTVTRGGRKRKAG 65
>gnl|CDD|238571 cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates
2-keto-3-deoxygluconate (KDG) to form
2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the
common intermediate product, that allows organisms to
channel D-glucuronate and/or D-galacturinate into the
glycolysis and therefore use polymers, like pectin and
xylan as carbon sources.
Length = 294
Score = 27.9 bits (63), Expect = 7.9
Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 30/126 (23%)
Query: 195 RHGEPAERLCNK--DPLTLKSAD--YLSEIFPFAKFIFMVRDGRATVHSII----SRKVT 246
R G A RL + D L AD +LS I + R + + +R VT
Sbjct: 104 RAGSAASRLTPEDLDEAALAGADHLHLSGITLA-----LSESAREALLEALEAAKARGVT 158
Query: 247 ITGFDL---------ESYRQCLKKWNEAISIIFGDEADRTKLCGVPKPVCLCSKVSEPDD 297
++ FDL E R+ L++ + I+ E + L G P ++ +
Sbjct: 159 VS-FDLNYRPKLWSAEEAREALEELLPYVDIVLPSEEEAEALLGDEDP-------TDAAE 210
Query: 298 ACKSIA 303
++A
Sbjct: 211 RALALA 216
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 27.7 bits (61), Expect = 8.5
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 2 EEEEKKKEEVEREEIPDEVKEGRRRKSGER-IGEEDNEDDKVSND 45
EEEE+ +E REE DE G R + EE+ E+ + S+D
Sbjct: 177 EEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDD 221
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 28.1 bits (63), Expect = 9.0
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 2 EEEEKKKEEVEREEIPDEVKEGR---RRKSGERIGEEDNEDDKVSNDIGRMNRGTRR 55
+E+ + + E + ++ R RR ER DN + + NR RR
Sbjct: 588 PQEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRRNRR 644
>gnl|CDD|237185 PRK12739, PRK12739, elongation factor G; Reviewed.
Length = 691
Score = 27.9 bits (63), Expect = 9.3
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 13/75 (17%)
Query: 3 EEEKKKEEVEREEIPDEVKE---GRRRKSGERIGEEDN-------EDDKVSNDIGRMNRG 52
++E + E E+IP ++KE R K E + E D E ++++ + +
Sbjct: 185 DDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEE--EIKAA 242
Query: 53 TRR-TVFLTVILVLC 66
R+ T+ + VLC
Sbjct: 243 IRKATINMEFFPVLC 257
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved
in cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 27.8 bits (62), Expect = 9.5
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 2 EEEEKKKEEVEREEIPDEVKEGRRRKS----GERIGEEDNEDDKVSNDIGRM 49
E E K+K E RE+I + +E R R S + +GE+D++DD + +
Sbjct: 48 EAEAKRKREELREKI-AKAREKRERNSKLGGIKTLGEDDDDDDDTKAWLKKS 98
>gnl|CDD|225888 COG3352, FlaC, Putative archaeal flagellar protein C [Cell
motility and secretion].
Length = 157
Score = 27.1 bits (60), Expect = 10.0
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 11/53 (20%)
Query: 6 KKKEEVEREEIPDEVKEGRRRKSGERIGE-EDNED--------DKVSNDIGRM 49
K+ E ++E DE E + R+ DNE + ND+G++
Sbjct: 13 KEATEEPQQESSDE--EKQVEAIHSRVENGIDNEVIDAIMERMTDIENDLGKV 63
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.414
Gapped
Lambda K H
0.267 0.0321 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,024,158
Number of extensions: 1733046
Number of successful extensions: 2611
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2590
Number of HSP's successfully gapped: 51
Length of query: 357
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 259
Effective length of database: 6,590,910
Effective search space: 1707045690
Effective search space used: 1707045690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (28.1 bits)