RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3832
(357 letters)
>3ap1_A Protein-tyrosine sulfotransferase 2; sulfotransferase fold,
transferase; HET: A3P; 1.90A {Homo sapiens} PDB: 3ap2_A*
3ap3_A*
Length = 337
Score = 178 bits (454), Expect = 2e-53
Identities = 110/174 (63%), Positives = 134/174 (77%), Gaps = 3/174 (1%)
Query: 96 KTYIVSKDAHVYRYDRFMPLIFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMR 155
+ +V + YRY + MPLIF+GGVPRSGTTLMRAMLDAHP+VRCG+ETRIIPR+L MR
Sbjct: 29 ELVMVGTNHVEYRYGKAMPLIFVGGVPRSGTTLMRAMLDAHPEVRCGEETRIIPRVLAMR 88
Query: 156 QHWIRSQKECQVYLISCTCQVYLIVINAAIAAFCLEVIARHGEPAERLCNKDPLTLKSAD 215
Q W +S +E L V V++AA+ AF LEVIA+HGEPA LCNKDP TLKS+
Sbjct: 89 QAWSKSGRE---KLRLDEAGVTDEVLDAAMQAFILEVIAKHGEPARVLCNKDPFTLKSSV 145
Query: 216 YLSEIFPFAKFIFMVRDGRATVHSIISRKVTITGFDLESYRQCLKKWNEAISII 269
YLS +FP +KF+ MVRDGRA+VHS+I+RKVTI GFDL SYR CL KWN+AI ++
Sbjct: 146 YLSRLFPNSKFLLMVRDGRASVHSMITRKVTIAGFDLSSYRDCLTKWNKAIEVM 199
>2zq5_A Putative uncharacterized protein; sulfotransferase fold; 2.00A
{Mycobacterium tuberculosis}
Length = 384
Score = 51.9 bits (123), Expect = 1e-07
Identities = 29/204 (14%), Positives = 59/204 (28%), Gaps = 53/204 (25%)
Query: 116 IFIGGVPRSGTTLMRAMLDAHPDVRC--------------GQETRIIPRILQMRQHWIRS 161
IF+ G+ R+GTT + +L A P + + P Q+ + +
Sbjct: 94 IFVTGLVRTGTTALHRLLGADPAHQGLHMWLAEYPQPRPPRETWESNPLYRQLDADFTQH 153
Query: 162 QKECQVYL-----ISCTCQVYLIVINAAIAAFCLEVIAR--------------------- 195
E Y + + ++ ++ + E +A
Sbjct: 154 HAENPGYTGLHFMAAYELEECWQLLRQSLHSVSYEALAHVPSYADWLSRQDWTPSYCRHR 213
Query: 196 -------HGEPAERLCNKDPLTLKSADYLSEIFPFAKFIFMVRDGRATVHSIISRKVTIT 248
+ +R K+P L + D L +P A + R + S+ S T
Sbjct: 214 RNLQLIGLNDAEKRWVLKNPSHLFALDALMATYPDALVVQTHRPVETIMASMCSLAQHTT 273
Query: 249 GF------DLESYRQCLKKWNEAI 266
+ + W+ +
Sbjct: 274 EGWSTKFVGAQIGADAMDTWSRGL 297
>2z6v_A Putative uncharacterized protein; sulfotransferase, unknown
function; HET: PLM; 2.60A {Mycobacterium avium}
Length = 414
Score = 49.5 bits (117), Expect = 7e-07
Identities = 33/247 (13%), Positives = 61/247 (24%), Gaps = 55/247 (22%)
Query: 116 IFIGGVPRSGTTLMRAMLDAHPDVRC--------------GQETRIIPRILQ-------- 153
+ + G+PR+GTT++ +LD P R + R PR L
Sbjct: 109 LIVLGMPRTGTTVISYLLDQDPARRSLLHWQCVHPIPPASTETLRTDPRCLALLDEQRKI 168
Query: 154 ---------MRQHWIRSQKECQVYLISCTCQVYLIVINAAIAAFCLEVIARHGEPAE--- 201
HW + + I L + + + +
Sbjct: 169 LDAVTRAKMPLPHWEDADGPTEDMFIHNQDFKGLSWDSFLPTDRYARWLFDEADMSSTYE 228
Query: 202 ---------------RLCNKDPLTLKSADYLSEIFPFAKFIFMVRDGRATVHSIISRKVT 246
K P + L ++FP A+ I+ RD S+ +
Sbjct: 229 YQKRYLQVLQSTAPGSWSLKMPSHSVHIEALLKVFPDARLIWAHRDPYKATGSLCNLWRL 288
Query: 247 ITGFDLESYRQCLKKWNEAISIIFGDEADRTK--LCGVPKPVCLCSK----VSEPDDACK 300
+ + + DR + + +P D +
Sbjct: 289 PQSLVMNTELLDQTEMGRLAMWQMRYHVDRPLRARERIGDERFFHMYYHEMMRDPMDVMR 348
Query: 301 SIANALG 307
I
Sbjct: 349 RIYEWAD 355
>1t8t_A Heparan sulfate D-glucosaminyl 3-O- sulfotransferase 3A1;
alpha-beta motif, substrate-binding cleft; HET: A3P CIT;
1.85A {Homo sapiens} SCOP: c.37.1.5 PDB: 1t8u_A*
Length = 271
Score = 42.5 bits (99), Expect = 1e-04
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 113 MPLIFIGGVPRSGTTLMRAMLDAHPDVRC-GQETRIIPRILQMRQHWIRSQ 162
+P I GV + GT + L HPDVR G E R W R
Sbjct: 17 LPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFDRSYDKGLAWYRDL 67
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 2e-04
Identities = 37/174 (21%), Positives = 57/174 (32%), Gaps = 30/174 (17%)
Query: 4 EEKKKEEVERE---EIPDEVKEGRRRKSGERIGEEDNEDDKVSNDIGR----MNRGTRRT 56
E K K E E I D + S + I D + IG + R T
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLI--PPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 57 VFLTVILVLCIFLMYKL-HTCSDRTGSIMLPKDEVEFFVFKTYIVSKDAHVYRYDRFMPL 115
+F V L FL K+ H + S + + +K YI D Y+R +
Sbjct: 492 LFRMVFLDFR-FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK---YERLVNA 547
Query: 116 I--FIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQHWIRSQKECQV 167
I F +P+ L+ + + T ++ L I + QV
Sbjct: 548 ILDF---LPKIEENLICS-----------KYTDLLRIALMAEDEAIFEEAHKQV 587
>3uan_A Heparan sulfate glucosamine 3-O-sulfotransferase; alpha/beta motif,
CO-FACT PAPS/PAP, heparan sulfate oligosaccharides,
golgi-localized transferase; HET: A3P NGY BDP SGN IDS;
1.84A {Mus musculus} PDB: 1vkj_A* 1zrh_A*
Length = 269
Score = 39.8 bits (92), Expect = 7e-04
Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 25/127 (19%)
Query: 113 MPLIFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQHWIRSQKECQVYLISC 172
+P I GV + GT + ML HPDV ++ E +
Sbjct: 16 LPQTIIIGVRKGGTRALLEMLSLHPDVAA-------------------AENEVHFF---D 53
Query: 173 TCQVYLIVINAAIAAFCLEVIARHGEPAERLCNKDPLTLKSADYLSEIFPFAKFIFMVRD 232
+ Y + + + P K + + + P + + ++RD
Sbjct: 54 WEEHYSQGLGWYLTQMPFSSPHQLTVEKTPAYFTSP---KVPERIHSMNPTIRLLLILRD 110
Query: 233 GRATVHS 239
V S
Sbjct: 111 PSERVLS 117
>3bd9_A Heparan sulfate glucosamine 3-O-sulfotransferase 5; heparan sulfate
biosynthesis, substrate specificity, glycoprotein, golgi
apparatus, membrane; HET: A3P; 2.30A {Homo sapiens}
Length = 280
Score = 39.4 bits (91), Expect = 0.001
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 113 MPLIFIGGVPRSGTTLMRAMLDAHPDVR 140
+P I GV + GT + ML+ HP V
Sbjct: 24 LPKAIIIGVRKGGTRALLEMLNLHPAVV 51
>3rnl_A Sulfotransferase; structural genomics, PSI-biology, midwest center
for structu genomics, MCSG, alpha-beta-alpha sandwich;
HET: MSE; 1.75A {Alicyclobacillus acidocaldarius subsp}
Length = 311
Score = 39.0 bits (90), Expect = 0.001
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 114 PLIFIGGVPRSGTTLMRAMLDAHPDVR 140
P FI G + GT+ + L HPD+
Sbjct: 9 PNFFIVGAAKCGTSSLDRYLSQHPDIY 35
>1nst_A NST1, heparan sulfate N-deacetylase/N-sulfotransferase; PAP,
haparin sulfate, haparin sulfate biosynthesis,
glycoprotein; HET: A3P; 2.30A {Homo sapiens} SCOP:
c.37.1.5
Length = 325
Score = 38.3 bits (88), Expect = 0.003
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 114 PLIFIGGVPRSGTTLMRAMLDAHPDVRC 141
P + I G ++GTT + L HPD+
Sbjct: 48 PKLLIIGPQKTGTTALYLFLGMHPDLSS 75
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.3 bits (83), Expect = 0.007
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 1 MEEEEKKKEEVEREEIPDEVKE--GRRRKSGERIGEEDNEDDK 41
++ K E+ RE+ +++E R+ + E+ + DK
Sbjct: 101 LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143
Score = 31.3 bits (70), Expect = 0.28
Identities = 6/40 (15%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 2 EEEEKKKE--EVEREEIPDEVKEGRRRKSGERIGEEDNED 39
+E E ++ E +R+ + + + + + E+ +D
Sbjct: 82 QEPESIRKWREEQRKRL--QELDAASKVMEQEWREKAKKD 119
Score = 29.7 bits (66), Expect = 1.1
Identities = 5/50 (10%), Positives = 13/50 (26%), Gaps = 13/50 (26%)
Query: 2 EEEEKKKEEV-------------EREEIPDEVKEGRRRKSGERIGEEDNE 38
+ ++E + E ++ K R + D +
Sbjct: 103 AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
Score = 27.4 bits (60), Expect = 5.4
Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 2 EEE------EKKKEEVEREEIPDEVKEGRRRKSGERIGEE--DNEDDKVSNDIGRMNR 51
E E E++++ ++ + +V E R+ ++ EE + ++V + NR
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK-INNR 139
>1tex_A STF0 sulfotransferase; sulfolipid, sulfation, TREH
trehalose-2-sulfate; HET: TRE; 2.60A {Mycobacterium
smegmatis} SCOP: c.37.1.5
Length = 287
Score = 36.1 bits (82), Expect = 0.011
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 117 FIGGVPRSGTTLMRAMLDAHPDVRCGQE 144
+ RSG+TL+ L A QE
Sbjct: 29 LVLASQRSGSTLLVESLRATGVAGEPQE 56
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.058
Identities = 41/277 (14%), Positives = 74/277 (26%), Gaps = 85/277 (30%)
Query: 88 DEVEFFVFKTYIVSKDAHVYRYDRFMPLIFIGGVPRSGTTLMRAMLDAHPDVRCGQETRI 147
+ + TY S V + + F G + AM+ + +I
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI 1706
Query: 148 IPRI-LQMRQHWIRSQKECQVYLISCTC--QVYLIVINAAIAAF-CLE---------VIA 194
I + RS+K L+S T Q L ++ AAF L+ A
Sbjct: 1707 FKEINEHSTSYTFRSEKG----LLSATQFTQPALTLM--EKAAFEDLKSKGLIPADATFA 1760
Query: 195 RH--GEPAERLCNKDPLTLKSADY-----LSEIFPFAKFIFMVRD-GRATVHSIISRKVT 246
H GE Y L+++ + +V G ++ ++
Sbjct: 1761 GHSLGE-----------------YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 247 ITGFDLESYRQCLKKWNEAISIIFGDEADRTKLCGVPKPVCLCSKVSEPDDACKSIAN-- 304
+ + + + ++ F EA + + +V + I N
Sbjct: 1804 RSNYGMIAIN------PGRVAASFSQEALQY----------VVERVGKRTGWLVEIVNYN 1847
Query: 305 -------------AL----------GATNPKCSELQV 318
AL ELQ
Sbjct: 1848 VENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQK 1884
>3mgb_A TEG12; sulfotransferase, glycopeptide, antibiotic, transferase-anti
complex; HET: GHP 3MY 3FG OMY PAP; 2.04A {Uncultured
soil bacterium} PDB: 3mgc_A* 3mg9_A* 3nib_A*
Length = 319
Score = 30.9 bits (70), Expect = 0.66
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 21/56 (37%)
Query: 101 SKDAHVYRYDRFMPL---------------------IFIGGVPRSGTTLMRAMLDA 135
S H + +P +I P++G T +R ML A
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMNGIRWIASYPKAGNTWVRCMLAA 58
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein
structure initiative, geranylge pyrophosphate synthase;
1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Length = 380
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 230 VRDGRATVHSIISRKVTITGFDLESYRQCLKKWNEAISIIFGD 272
R G TVH + F+ + + + ++SI+ GD
Sbjct: 116 TRRGAPTVHRAVEADHRANNFEGDP-----EHFGVSVSILAGD 153
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.8
Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 27/54 (50%)
Query: 256 RQCLKKWNEAISIIFGDEADRTKLCGVPKPVCLCSKVSEPDDACKSIANALGAT 309
+Q LKK +A S+ K+ D A A A+ AT
Sbjct: 19 KQALKKL-QA-SL----------------------KLYADDSA---PALAIKAT 45
>2ov8_A STAL; sulfotransferase, structural genomics, montr kingston
bacterial structural genomics initiative, BSGI, UN
function; 2.58A {Streptomyces toyocaensis} PDB: 2ovb_A
2ovf_A*
Length = 288
Score = 28.8 bits (65), Expect = 2.3
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 115 LIFIGGVPRSGTTLMRAMLDA 135
+ +I P++G +R ML +
Sbjct: 22 MCWIASYPKAGGHWLRCMLTS 42
>1j99_A Alcohol sulfotransferase; dehydroepiandosterone, DHEA; HET: AND;
1.99A {Homo sapiens} SCOP: c.37.1.5 PDB: 1ov4_A* 3f3y_A*
2qp3_A* 2qp4_A* 1efh_A*
Length = 293
Score = 28.5 bits (64), Expect = 3.5
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 93 FVFKTYIVSKDAHVYRYDRFMPL---IFIGGVPRSGTTLMRAMLDA 135
F T + D F+ + I P+SGT + +L
Sbjct: 19 IAFPTMGFRSETLRKVRDEFVIRDEDVIILTYPKSGTNWLAEILCL 64
>3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A
3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A*
3poc_A*
Length = 666
Score = 27.7 bits (62), Expect = 6.0
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 89 EVEFFVFKTYIVSKDAHVYRYDRFMPLIF--IGGVPRSGTTLMRAMLDAHPD 138
E E + F+ + RY R +P ++ + + + +PD
Sbjct: 488 EQECYQFENIEDFRSVINARY-RLVPYLYSEYMKAALNDDMYFKPLGFVYPD 538
>2zpt_X Tyrosine-ester sulfotransferase; SULT1D1, catecholamine,
sulfonation; HET: A3P GOL; 1.15A {Mus musculus} PDB:
2zvp_X* 2zvq_X* 2zyt_X* 2zyu_X* 2zyv_X* 2zyw_X*
Length = 295
Score = 27.0 bits (60), Expect = 9.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 116 IFIGGVPRSGTTLMRAMLDA 135
I I P+SGTT + +LD
Sbjct: 41 ILISTYPKSGTTWVSEILDL 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.414
Gapped
Lambda K H
0.267 0.0497 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,492,279
Number of extensions: 329549
Number of successful extensions: 901
Number of sequences better than 10.0: 1
Number of HSP's gapped: 886
Number of HSP's successfully gapped: 28
Length of query: 357
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 262
Effective length of database: 4,049,298
Effective search space: 1060916076
Effective search space used: 1060916076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.7 bits)