RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3832
(357 letters)
>d1texa_ c.37.1.5 (A:) Stf0 sulfotransferase {Mycobacterium
smegmatis [TaxId: 1772]}
Length = 265
Score = 62.1 bits (149), Expect = 1e-11
Identities = 22/231 (9%), Positives = 42/231 (18%), Gaps = 43/231 (18%)
Query: 114 PLIFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQ-------------HWIR 160
+ RSG+TL+ L A QE M
Sbjct: 4 TAYLVLASQRSGSTLLVESLRATGVAGEPQEFFQYLPNTSMSPQPREWFADVEDQSILRL 63
Query: 161 SQKECQVYLISCTCQVYLIVINAAIAA-------FCLEVIARHGEPAERLCNKDPLTLKS 213
+ ++ I + + +
Sbjct: 64 LDPLIEGKPDLAPATIWRDYIQTVGRTPNGVWGGKLMWNQTPLLVQRAKDLPDRSGSGLL 123
Query: 214 ADYLSEIFPFAKFIFMV-RDGRATVHSIISR----------------KVTITGFDLESYR 256
+ + I + D + S + +
Sbjct: 124 SAIRDVVGSDPVLIHIHRPDVVSQAVSFWRAVQTRVWRGRPDPVRDARAEYHAGAIAHVI 183
Query: 257 QCLKKWNEAISIIFGDEADRTKLCGVPKPVCLCSKVSEPDDACKSIANALG 307
L+ E F +E V + ++ ALG
Sbjct: 184 TMLRAQEEGWRAWFTEENVEPID------VDYPYLWRNLTEVVGTVLEALG 228
>d1t8ta_ c.37.1.5 (A:) Heparan sulfate glucosamine
3-O-sulfotransferase 3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 54.2 bits (129), Expect = 5e-09
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 111 RFMPLIFIGGVPRSGTTLMRAMLDAHPDVRC-GQETRIIPRILQMRQHWIRSQ 162
+ +P I GV + GT + L HPDVR G E R W R
Sbjct: 15 KQLPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFDRSYDKGLAWYRDL 67
>d1vkja_ c.37.1.5 (A:) Heparan sulfate 3-O-sulfotransferase {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 51.9 bits (123), Expect = 3e-08
Identities = 24/163 (14%), Positives = 49/163 (30%), Gaps = 18/163 (11%)
Query: 113 MPLIFIGGVPRSGTTLMRAMLDAHPDVRCGQE-------TRIIPRILQMRQHWIRSQKEC 165
+P I GV + GT + ML HPDV + + L +
Sbjct: 5 LPQTIIIGVRKGGTRALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLGWYLTQMPFSSPH 64
Query: 166 QVYLISCTCQVYLIVINAAIAAFCLE--VIARHGEPAERLCNKDPLTLKSADYLSEIFPF 223
Q+ + + I + ++ +P+ER+ + L + + +P
Sbjct: 65 QLTVEKTPAYFTSPKVPERIHSMNPTIRLLLILRDPSERVLSDYTQVLYNHLQKHKPYPP 124
Query: 224 AKFIFMVRDGRATVHSIISRKVTITGFDLESYRQCLKKWNEAI 266
+ + M + ++R Y + W
Sbjct: 125 IEDLLMRDGRLNLDYKALNRS---------LYHAHMLNWLRFF 158
>d1nsta_ c.37.1.5 (A:) Heparan sulfate
N-deacetylase/N-sulfotransferase domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 301
Score = 49.2 bits (116), Expect = 3e-07
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 114 PLIFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQ 153
P + I G ++GTT + L HPD+ + +Q
Sbjct: 27 PKLLIIGPQKTGTTALYLFLGMHPDLSSNYPSSETFEEIQ 66
>d1fmja_ c.37.1.5 (A:) Retinol dehydratase {Fall armyworm
(Spodoptera frugiperda) [TaxId: 7108]}
Length = 342
Score = 38.8 bits (89), Expect = 6e-04
Identities = 15/125 (12%), Positives = 35/125 (28%), Gaps = 6/125 (4%)
Query: 116 IFIGGVPRSGTTLMRAMLDAHPDVRCGQETRIIPRILQMRQHWIRSQKECQVYLISCTCQ 175
+F+ RSGTT+ + ++ + + + + +R ++
Sbjct: 59 VFVASYQRSGTTMTQELVWLIENDLNFEAAKT---YMSLRYIYLDGFMIYDPEKQEEYND 115
Query: 176 VYLIVINAAIAAFCLEVIARHGEPAERLCNKDPLTLKSADYLSEIFPFAKFIFMVRDGRA 235
L L ++ P L P ++ P + + D
Sbjct: 116 -ILPNPENLDMERYLGLLEYSSRPGSSLLAAVP--PTEKRFVKTHLPLSLMPPNMLDTVK 172
Query: 236 TVHSI 240
V+
Sbjct: 173 MVYLA 177
>d1j99a_ c.37.1.5 (A:) Hydroxysteroid sulfotransferase sult2a1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 35.2 bits (80), Expect = 0.008
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 89 EVEFFVFKTYIVSKDAHVYRYDRFMPL---IFIGGVPRSGTTLMRAMLDAHPDVRCGQET 145
E F T + D F+ + I P+SGT + +L +
Sbjct: 6 WFEGIAFPTMGFRSETLRKVRDEFVIRDEDVIILTYPKSGTNWLAEILCLMHSKGDAKWI 65
Query: 146 RIIPRILQMRQHWIRSQK 163
+ +P + R W+ S+
Sbjct: 66 QSVP--IWERSPWVESEI 81
>d1q20a_ c.37.1.5 (A:) Cholesterol sulfotransferase sult2b1b {Human
(Homo sapiens) [TaxId: 9606]}
Length = 294
Score = 33.7 bits (76), Expect = 0.023
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 85 LPKDEVEF--FVFKTYIVSKDAHVYRYDRFMPL---IFIGGVPRSGTTLMRAMLDA 135
LP + + F + S ++ + IFI P+SGTT M ++
Sbjct: 10 LPGEYFRYKGVPFPVGLYSLESISLAENTQDVRDDDIFIITYPKSGTTWMIEIICL 65
>d2z5fa_ c.37.1.5 (A:) Thyroid hormone sulfotransferase Sult1b1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 33.6 bits (76), Expect = 0.028
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 116 IFIGGVPRSGTTLMRAMLDA 135
I I P+SGTT + ++D
Sbjct: 38 IVIATYPKSGTTWVSEIIDM 57
>d1q44a_ c.37.1.5 (A:) Putative steroid sulfotransferase rarO47
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 320
Score = 33.6 bits (76), Expect = 0.032
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 116 IFIGGVPRSGTTLMRAMLDA 135
I + P+SGTT ++A++ A
Sbjct: 63 IILVTNPKSGTTWLKALVFA 82
>d1g3ma_ c.37.1.5 (A:) Estrogen sulfotransferase (STE, sult1e1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 290
Score = 32.9 bits (74), Expect = 0.043
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 116 IFIGGVPRSGTTLMRAMLDA 135
+ I P+SGTT + ++
Sbjct: 38 LVIATYPKSGTTWVSEIVYM 57
>d1ls6a_ c.37.1.5 (A:) Aryl sulfotransferase sult1a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 288
Score = 32.1 bits (72), Expect = 0.092
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 116 IFIGGVPRSGTTLMRAMLDA 135
+ I P+SGTT + +LD
Sbjct: 34 LLISTYPKSGTTWVSQILDM 53
>d3bfxa1 c.37.1.5 (A:12-296) Sulfotransferase Sult1c2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 32.0 bits (72), Expect = 0.093
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 116 IFIGGVPRSGTTLMRAMLDA 135
+ I P++GTT ++ ++D
Sbjct: 31 LLICTYPKAGTTWIQEIVDM 50
>d2k5qa1 b.40.13.1 (A:2-97) Uncharacterized protein BC4932
{Bacillus cereus [TaxId: 1396]}
Length = 96
Score = 26.3 bits (58), Expect = 2.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 6 KKKEEVEREEIPDEVKE 22
EEV+++E+P +VKE
Sbjct: 75 SAWEEVKKDELPAKVKE 91
>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas
sp., strain YL [TaxId: 306]}
Length = 220
Score = 26.8 bits (57), Expect = 3.9
Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 6/99 (6%)
Query: 129 MRAMLDAHPDVRCGQETRIIPRILQMRQHWIRSQKECQVYLISCTCQVYLI-----VINA 183
+ +H +R G + + +Q+ + R + + L + +
Sbjct: 122 SIDAVVSHAGLRDGFDHLLSVDPVQVYKPDNRVYELAEQALGLDRSAILFVASNAWDATG 181
Query: 184 AIAAFCLEV-IARHGEPAERLCNKDPLTLKSADYLSEIF 221
A I R G E + + S + E+F
Sbjct: 182 ARYFGFPTCWINRTGNVFEEMGQTPDWEVTSLRAVVELF 220
>d2k5wa1 b.40.13.1 (A:2-109) Uncharacterized protein BC2438
{Bacillus cereus [TaxId: 1396]}
Length = 108
Score = 25.6 bits (56), Expect = 4.0
Identities = 5/14 (35%), Positives = 13/14 (92%)
Query: 9 EEVEREEIPDEVKE 22
EE+++ ++P++VK+
Sbjct: 90 EEIQKADLPEKVKD 103
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 26.2 bits (58), Expect = 6.2
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 1 MEEEEKKKEEVEREEIPDEVK----EGRRRKSG 29
+ +EKK+ +ERE+ ++ K +GRR + G
Sbjct: 111 LTSQEKKQIRLEREKFEEDYKFCELDGRREQVG 143
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 26.2 bits (58), Expect = 6.3
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 1 MEEEEKKKEEVEREEIPDEVK----EGRRRKSG 29
M +EEK K + E E++ E + + +
Sbjct: 119 MSKEEKLKIKEENEKLLKEYGFCIMDNHKERIA 151
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.414
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,356,806
Number of extensions: 65826
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 25
Length of query: 357
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 271
Effective length of database: 1,226,816
Effective search space: 332467136
Effective search space used: 332467136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)