BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3833
(1087 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound
pdb|1FGH|A Chain A, Complex With 4-Hydroxy-Trans-Aconitate
pdb|8ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 1026 bits (2652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/763 (65%), Positives = 572/763 (74%), Gaps = 72/763 (9%)
Query: 120 SSYEAEQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGV 179
++ E E+ + RLRPDRVAMQDATAQMAMLQFISSGLP+VAVPSTIHCDHLIEAQ+GG
Sbjct: 51 ANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISSGLPKVAVPSTIHCDHLIEAQLGGE 110
Query: 180 EDLKRAKSQNEEVYAFLRSAGAKYGVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHTPN 239
+DL+RAK N+EVY FL +AGAKYGVGFW PGSGIIHQIILENYA+PG+L+IGTDSHTPN
Sbjct: 111 KDLRRAKDINQEVYNFLATAGAKYGVGFWRPGSGIIHQIILENYAYPGVLLIGTDSHTPN 170
Query: 240 XXXXXXXXXXXXXADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTV 299
ADAVDVMA IPWELKCPKVIGV+LTG L GWTS KDVILKVAGILTV
Sbjct: 171 GGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTV 230
Query: 300 KGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCT 359
KGGTGAI+E YHGPG+D+IS
Sbjct: 231 KGGTGAIVE---------------------------------------YHGPGVDSIS-- 249
Query: 360 GMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYD 419
CTGM TICNMGAEIGATTSVFPYN+RM
Sbjct: 250 -------------------------------CTGMATICNMGAEIGATTSVFPYNHRMKK 278
Query: 420 FLKATLREDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLG 479
+L T R DIA A +++ L PD G YDQLIE++L+ L+PH+NGPFTPDLAHP+ ++G
Sbjct: 279 YLSKTGRADIANLADEFKDHLVPDSGCHYDQLIEINLSELKPHINGPFTPDLAHPVAEVG 338
Query: 480 EAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRA 539
A+K GWP+DI+V LIGSCTN+SYEDM R A++AK+A+AHGLK + F +TPGSEQIRA
Sbjct: 339 SVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRA 398
Query: 540 TIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPA 599
TIERDG AQ LR+ GG VLANACGPCIGQW+RKD+K GEKNTIV SYNRNFTGRNDANP
Sbjct: 399 TIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPE 458
Query: 600 THAFVTSPELVTALAIKGTLAFDPRSDTLTGSDGKPFKLRDPFGDELPTKGFDPGVDTYQ 659
THAFVTSPE+VTALAI GTL F+P +D LTG DGK FKL P DELP FDPG DTYQ
Sbjct: 459 THAFVTSPEIVTALAIAGTLKFNPETDFLTGKDGKKFKLEAPDADELPRAEFDPGQDTYQ 518
Query: 660 PPPKDGSSLSVDVDPKSQRLQLLEPFDVWDKKDIKDMVVLIKVKGKCTTDHISAAGPWLK 719
PPKD S VDV P SQRLQLLEPFD WD KD++D+ +LIKVKGKCTTDHISAAGPWLK
Sbjct: 519 HPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLK 578
Query: 720 FRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENY 779
FRGHLDNISNNL + A N+EN + N V+N +T ++GPV + AR YK G+ WV +GDENY
Sbjct: 579 FRGHLDNISNNLLIGAINSENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENY 638
Query: 780 GEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRIS 839
GEGSSREH+ALEPR LGGRAII KSFARIHETNLKKQGLLPLTFA+P+DY+KI P D+++
Sbjct: 639 GEGSSREHSALEPRFLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIHPVDKLT 698
Query: 840 LVGLKDLAPGKPVTAQIKHADGKVEEIKLNHSMNEQQITWFQA 882
+ GLKD APGKP+T IKH +G E I LNH+ NE QI WF+A
Sbjct: 699 IQGLKDFAPGKPLTCIIKHPNGTQETILLNHTFNETQIEWFRA 741
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
pdb|1AMJ|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
Length = 754
Score = 1026 bits (2652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/763 (65%), Positives = 572/763 (74%), Gaps = 72/763 (9%)
Query: 120 SSYEAEQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGV 179
++ E E+ + RLRPDRVAMQDATAQMAMLQFISSGLP+VAVPSTIHCDHLIEAQ+GG
Sbjct: 51 ANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISSGLPKVAVPSTIHCDHLIEAQLGGE 110
Query: 180 EDLKRAKSQNEEVYAFLRSAGAKYGVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHTPN 239
+DL+RAK N+EVY FL +AGAKYGVGFW PGSGIIHQIILENYA+PG+L+IGTDSHTPN
Sbjct: 111 KDLRRAKDINQEVYNFLATAGAKYGVGFWRPGSGIIHQIILENYAYPGVLLIGTDSHTPN 170
Query: 240 XXXXXXXXXXXXXADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTV 299
ADAVDVMA IPWELKCPKVIGV+LTG L GWTS KDVILKVAGILTV
Sbjct: 171 GGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTV 230
Query: 300 KGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCT 359
KGGTGAI+E YHGPG+D+IS
Sbjct: 231 KGGTGAIVE---------------------------------------YHGPGVDSIS-- 249
Query: 360 GMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYD 419
CTGM TICNMGAEIGATTSVFPYN+RM
Sbjct: 250 -------------------------------CTGMATICNMGAEIGATTSVFPYNHRMKK 278
Query: 420 FLKATLREDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLG 479
+L T R DIA A +++ L PD G YDQLIE++L+ L+PH+NGPFTPDLAHP+ ++G
Sbjct: 279 YLSKTGRADIANLADEFKDHLVPDSGCHYDQLIEINLSELKPHINGPFTPDLAHPVAEVG 338
Query: 480 EAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRA 539
A+K GWP+DI+V LIGSCTN+SYEDM R A++AK+A+AHGLK + F +TPGSEQIRA
Sbjct: 339 SVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRA 398
Query: 540 TIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPA 599
TIERDG AQ LR+ GG VLANACGPCIGQW+RKD+K GEKNTIV SYNRNFTGRNDANP
Sbjct: 399 TIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPE 458
Query: 600 THAFVTSPELVTALAIKGTLAFDPRSDTLTGSDGKPFKLRDPFGDELPTKGFDPGVDTYQ 659
THAFVTSPE+VTALAI GTL F+P +D LTG DGK FKL P DELP FDPG DTYQ
Sbjct: 459 THAFVTSPEIVTALAIAGTLKFNPETDFLTGKDGKKFKLEAPDADELPRAEFDPGQDTYQ 518
Query: 660 PPPKDGSSLSVDVDPKSQRLQLLEPFDVWDKKDIKDMVVLIKVKGKCTTDHISAAGPWLK 719
PPKD S VDV P SQRLQLLEPFD WD KD++D+ +LIKVKGKCTTDHISAAGPWLK
Sbjct: 519 HPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLK 578
Query: 720 FRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENY 779
FRGHLDNISNNL + A N+EN + N V+N +T ++GPV + AR YK G+ WV +GDENY
Sbjct: 579 FRGHLDNISNNLLIGAINSENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENY 638
Query: 780 GEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRIS 839
GEGSSREH+ALEPR LGGRAII KSFARIHETNLKKQGLLPLTFA+P+DY+KI P D+++
Sbjct: 639 GEGSSREHSALEPRFLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIHPVDKLT 698
Query: 840 LVGLKDLAPGKPVTAQIKHADGKVEEIKLNHSMNEQQITWFQA 882
+ GLKD APGKP+T IKH +G E I LNH+ NE QI WF+A
Sbjct: 699 IQGLKDFAPGKPLTCIIKHPNGTQETILLNHTFNETQIEWFRA 741
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
pdb|1NIT|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
Length = 754
Score = 1025 bits (2649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/763 (65%), Positives = 571/763 (74%), Gaps = 72/763 (9%)
Query: 120 SSYEAEQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGV 179
++ E E+ + RLRPDRVAMQDATAQMAMLQFISSGLP+VAVPSTIHCDHLIEAQ+GG
Sbjct: 51 ANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISSGLPKVAVPSTIHCDHLIEAQLGGE 110
Query: 180 EDLKRAKSQNEEVYAFLRSAGAKYGVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHTPN 239
+DL+RAK N+EVY FL +AGAKYGVGFW PGSGIIHQIILENYA+PG+L+IGTDSHTPN
Sbjct: 111 KDLRRAKDINQEVYNFLATAGAKYGVGFWRPGSGIIHQIILENYAYPGVLLIGTDSHTPN 170
Query: 240 XXXXXXXXXXXXXADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTV 299
ADAVDVMA IPWELKCPKVIGV+LTG L GWTS KDVILKVAGILTV
Sbjct: 171 GGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTV 230
Query: 300 KGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCT 359
KGGTGAI+E YHGPG+D+IS
Sbjct: 231 KGGTGAIVE---------------------------------------YHGPGVDSIS-- 249
Query: 360 GMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYD 419
CTGM TICNMGAEIGATTSVFPYN+RM
Sbjct: 250 -------------------------------CTGMATICNMGAEIGATTSVFPYNHRMKK 278
Query: 420 FLKATLREDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLG 479
+L T R DIA A +++ L PD G YDQLIE++L+ L+PH+NGPFTPDLAHP+ ++G
Sbjct: 279 YLSKTGRADIANLADEFKDHLVPDSGCHYDQLIEINLSELKPHINGPFTPDLAHPVAEVG 338
Query: 480 EAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRA 539
A+K GWP+DI+V LIGSCTN+SYEDM R A++AK+A+AHGLK + F +TPGSEQIRA
Sbjct: 339 SVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRA 398
Query: 540 TIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPA 599
TIERDG AQ LR+ GG VLANACGPCIGQW+RKD+K GEKNTIV SYNRNFTGRNDANP
Sbjct: 399 TIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPE 458
Query: 600 THAFVTSPELVTALAIKGTLAFDPRSDTLTGSDGKPFKLRDPFGDELPTKGFDPGVDTYQ 659
THAFVTSPE+VTALAI GTL F+P +D LTG DGK FKL P DELP FDPG DTYQ
Sbjct: 459 THAFVTSPEIVTALAIAGTLKFNPETDFLTGKDGKKFKLEAPDADELPRAEFDPGQDTYQ 518
Query: 660 PPPKDGSSLSVDVDPKSQRLQLLEPFDVWDKKDIKDMVVLIKVKGKCTTDHISAAGPWLK 719
PPKD S VDV P SQRLQLLEPFD WD KD++D+ +LIKVKGKCTTDHISAAGPWLK
Sbjct: 519 HPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLK 578
Query: 720 FRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENY 779
FRGHLDNISNNL + A N+EN + N V+N +T ++GPV + AR YK G+ WV +GDENY
Sbjct: 579 FRGHLDNISNNLLIGAINSENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENY 638
Query: 780 GEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRIS 839
GEGSSREH ALEPR LGGRAII KSFARIHETNLKKQGLLPLTFA+P+DY+KI P D+++
Sbjct: 639 GEGSSREHRALEPRFLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIHPVDKLT 698
Query: 840 LVGLKDLAPGKPVTAQIKHADGKVEEIKLNHSMNEQQITWFQA 882
+ GLKD APGKP+T IKH +G E I LNH+ NE QI WF+A
Sbjct: 699 IQGLKDFAPGKPLTCIIKHPNGTQETILLNHTFNETQIEWFRA 741
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|6ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|7ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 1024 bits (2648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/763 (65%), Positives = 571/763 (74%), Gaps = 72/763 (9%)
Query: 120 SSYEAEQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGV 179
++ E E+ + RLRPDRVAMQDATAQMAMLQFISSGLP+VAVPSTIHCDHLIEAQ+GG
Sbjct: 51 ANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISSGLPKVAVPSTIHCDHLIEAQLGGE 110
Query: 180 EDLKRAKSQNEEVYAFLRSAGAKYGVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHTPN 239
+DL+RAK N+EVY FL +AGAKYGVGFW PGSGIIHQIILENYA+PG+L+IGTDSHTPN
Sbjct: 111 KDLRRAKDINQEVYNFLATAGAKYGVGFWRPGSGIIHQIILENYAYPGVLLIGTDSHTPN 170
Query: 240 XXXXXXXXXXXXXADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTV 299
ADAVDVMA IPWELKCPKVIGV+LTG L GWTS KDVILKVAGILTV
Sbjct: 171 GGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTV 230
Query: 300 KGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCT 359
KGGTGAI+E YHGPG+D+IS
Sbjct: 231 KGGTGAIVE---------------------------------------YHGPGVDSIS-- 249
Query: 360 GMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYD 419
CTGM TICNMGAEIGATTSVFPYN+RM
Sbjct: 250 -------------------------------CTGMATICNMGAEIGATTSVFPYNHRMKK 278
Query: 420 FLKATLREDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLG 479
+L T R DIA A +++ L PD G YDQ+IE++L+ L+PH+NGPFTPDLAHP+ ++G
Sbjct: 279 YLSKTGRADIANLADEFKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEVG 338
Query: 480 EAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRA 539
A+K GWP+DI+V LIGSCTN+SYEDM R A++AK+A+AHGLK + F +TPGSEQIRA
Sbjct: 339 SVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRA 398
Query: 540 TIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPA 599
TIERDG AQ LR+ GG VLANACGPCIGQW+RKD+K GEKNTIV SYNRNFTGRNDANP
Sbjct: 399 TIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPE 458
Query: 600 THAFVTSPELVTALAIKGTLAFDPRSDTLTGSDGKPFKLRDPFGDELPTKGFDPGVDTYQ 659
THAFVTSPE+VTALAI GTL F+P +D LTG DGK FKL P DELP FDPG DTYQ
Sbjct: 459 THAFVTSPEIVTALAIAGTLKFNPETDFLTGKDGKKFKLEAPDADELPRAEFDPGQDTYQ 518
Query: 660 PPPKDGSSLSVDVDPKSQRLQLLEPFDVWDKKDIKDMVVLIKVKGKCTTDHISAAGPWLK 719
PPKD S VDV P SQRLQLLEPFD WD KD++D+ +LIKVKGKCTTDHISAAGPWLK
Sbjct: 519 HPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLK 578
Query: 720 FRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENY 779
FRGHLDNISNNL + A N EN + N V+N +T ++GPV + AR YK G+ WV +GDENY
Sbjct: 579 FRGHLDNISNNLLIGAINIENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENY 638
Query: 780 GEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRIS 839
GEGSSREH+ALEPRHLGGRAII KSFARIHETNLKKQGLLPLTFA+P+DY+KI P D+++
Sbjct: 639 GEGSSREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIHPVDKLT 698
Query: 840 LVGLKDLAPGKPVTAQIKHADGKVEEIKLNHSMNEQQITWFQA 882
+ GLKD APGKP+ IKH +G E I LNH+ NE QI WF+A
Sbjct: 699 IQGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRA 741
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate
Length = 754
Score = 1023 bits (2645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/763 (65%), Positives = 571/763 (74%), Gaps = 72/763 (9%)
Query: 120 SSYEAEQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGV 179
++ E E+ + RLRPDRVAMQDATAQMAMLQFISSGLP+VAVPSTIHCDHLIEAQ+GG
Sbjct: 51 ANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISSGLPKVAVPSTIHCDHLIEAQLGGE 110
Query: 180 EDLKRAKSQNEEVYAFLRSAGAKYGVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHTPN 239
+DL+RAK N+EVY FL +AGAKYGVGFW PGSGIIHQIILENYA+PG+L+IGTDSHTPN
Sbjct: 111 KDLRRAKDINQEVYNFLATAGAKYGVGFWRPGSGIIHQIILENYAYPGVLLIGTDSHTPN 170
Query: 240 XXXXXXXXXXXXXADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTV 299
ADAVDVMA IPWELKCPKVIGV+LTG L GWTS KDVILKVAGILTV
Sbjct: 171 GGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTV 230
Query: 300 KGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCT 359
KGGTGAI+E YHGPG+D+IS
Sbjct: 231 KGGTGAIVE---------------------------------------YHGPGVDSIS-- 249
Query: 360 GMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYD 419
CTGM TICNMGAEIGATTSVFPYN+RM
Sbjct: 250 -------------------------------CTGMATICNMGAEIGATTSVFPYNHRMKK 278
Query: 420 FLKATLREDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLG 479
+L T R DIA A +++ L PD G YDQ+IE++L+ L+PH+NGPFTPDLAHP+ ++G
Sbjct: 279 YLSKTGRADIANLADEFKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEVG 338
Query: 480 EAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRA 539
A+K GWP+DI+V LIGSCTN+SYEDM R A++AK+A+AHGLK + F +TPGSEQIRA
Sbjct: 339 SVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRA 398
Query: 540 TIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPA 599
TIERDG AQ LR+ GG VLANACGPCIGQW+RKD+K GEKNTIV SYNRNFTGRNDANP
Sbjct: 399 TIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPE 458
Query: 600 THAFVTSPELVTALAIKGTLAFDPRSDTLTGSDGKPFKLRDPFGDELPTKGFDPGVDTYQ 659
THAFVTSPE+VTALAI GTL F+P +D LTG DGK FKL P DELP FDPG DTYQ
Sbjct: 459 THAFVTSPEIVTALAIAGTLKFNPETDFLTGKDGKKFKLEAPDADELPRAEFDPGQDTYQ 518
Query: 660 PPPKDGSSLSVDVDPKSQRLQLLEPFDVWDKKDIKDMVVLIKVKGKCTTDHISAAGPWLK 719
PPKD S VDV P SQRLQLLEPFD WD KD++D+ +LIKVKGKCTTDHISAAGPWLK
Sbjct: 519 HPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLK 578
Query: 720 FRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENY 779
FRGHLDNISNNL + A N EN + N V+N +T ++GPV + AR YK G+ WV +GDENY
Sbjct: 579 FRGHLDNISNNLLIGAINIENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENY 638
Query: 780 GEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRIS 839
GEG+SREH+ALEPRHLGGRAII KSFARIHETNLKKQGLLPLTFA+P+DY+KI P D+++
Sbjct: 639 GEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIHPVDKLT 698
Query: 840 LVGLKDLAPGKPVTAQIKHADGKVEEIKLNHSMNEQQITWFQA 882
+ GLKD APGKP+ IKH +G E I LNH+ NE QI WF+A
Sbjct: 699 IQGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRA 741
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase
pdb|1B0K|A Chain A, S642a:fluorocitrate Complex Of Aconitase
Length = 753
Score = 1023 bits (2645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/763 (65%), Positives = 571/763 (74%), Gaps = 72/763 (9%)
Query: 120 SSYEAEQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGV 179
++ E E+ + RLRPDRVAMQDATAQMAMLQFISSGLP+VAVPSTIHCDHLIEAQ+GG
Sbjct: 50 ANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISSGLPKVAVPSTIHCDHLIEAQLGGE 109
Query: 180 EDLKRAKSQNEEVYAFLRSAGAKYGVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHTPN 239
+DL+RAK N+EVY FL +AGAKYGVGFW PGSGIIHQIILENYA+PG+L+IGTDSHTPN
Sbjct: 110 KDLRRAKDINQEVYNFLATAGAKYGVGFWRPGSGIIHQIILENYAYPGVLLIGTDSHTPN 169
Query: 240 XXXXXXXXXXXXXADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTV 299
ADAVDVMA IPWELKCPKVIGV+LTG L GWTS KDVILKVAGILTV
Sbjct: 170 GGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTV 229
Query: 300 KGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCT 359
KGGTGAI+E YHGPG+D+IS
Sbjct: 230 KGGTGAIVE---------------------------------------YHGPGVDSIS-- 248
Query: 360 GMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYD 419
CTGM TICNMGAEIGATTSVFPYN+RM
Sbjct: 249 -------------------------------CTGMATICNMGAEIGATTSVFPYNHRMKK 277
Query: 420 FLKATLREDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLG 479
+L T R DIA A +++ L PD G YDQ+IE++L+ L+PH+NGPFTPDLAHP+ ++G
Sbjct: 278 YLSKTGRADIANLADEFKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEVG 337
Query: 480 EAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRA 539
A+K GWP+DI+V LIGSCTN+SYEDM R A++AK+A+AHGLK + F +TPGSEQIRA
Sbjct: 338 SVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRA 397
Query: 540 TIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPA 599
TIERDG AQ LR+ GG VLANACGPCIGQW+RKD+K GEKNTIV SYNRNFTGRNDANP
Sbjct: 398 TIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPE 457
Query: 600 THAFVTSPELVTALAIKGTLAFDPRSDTLTGSDGKPFKLRDPFGDELPTKGFDPGVDTYQ 659
THAFVTSPE+VTALAI GTL F+P +D LTG DGK FKL P DELP FDPG DTYQ
Sbjct: 458 THAFVTSPEIVTALAIAGTLKFNPETDFLTGKDGKKFKLEAPDADELPRAEFDPGQDTYQ 517
Query: 660 PPPKDGSSLSVDVDPKSQRLQLLEPFDVWDKKDIKDMVVLIKVKGKCTTDHISAAGPWLK 719
PPKD S VDV P SQRLQLLEPFD WD KD++D+ +LIKVKGKCTTDHISAAGPWLK
Sbjct: 518 HPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLK 577
Query: 720 FRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENY 779
FRGHLDNISNNL + A N EN + N V+N +T ++GPV + AR YK G+ WV +GDENY
Sbjct: 578 FRGHLDNISNNLLIGAINIENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENY 637
Query: 780 GEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRIS 839
GEG+SREH+ALEPRHLGGRAII KSFARIHETNLKKQGLLPLTFA+P+DY+KI P D+++
Sbjct: 638 GEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIHPVDKLT 697
Query: 840 LVGLKDLAPGKPVTAQIKHADGKVEEIKLNHSMNEQQITWFQA 882
+ GLKD APGKP+ IKH +G E I LNH+ NE QI WF+A
Sbjct: 698 IQGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRA 740
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex
Length = 753
Score = 1022 bits (2643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/763 (65%), Positives = 571/763 (74%), Gaps = 72/763 (9%)
Query: 120 SSYEAEQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGV 179
++ E E+ + RLRPDRVAMQDATAQMAMLQFISSGLP+VAVPSTIHCDHLIEAQ+GG
Sbjct: 50 ANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISSGLPKVAVPSTIHCDHLIEAQLGGE 109
Query: 180 EDLKRAKSQNEEVYAFLRSAGAKYGVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHTPN 239
+DL+RAK N+EVY FL +AGAKYGVGFW PGSGIIHQIILENYA+PG+L+IGTDSHTPN
Sbjct: 110 KDLRRAKDINQEVYNFLATAGAKYGVGFWRPGSGIIHQIILENYAYPGVLLIGTDSHTPN 169
Query: 240 XXXXXXXXXXXXXADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTV 299
ADAVDVMA IPWELKCPKVIGV+LTG L GWTS KDVILKVAGILTV
Sbjct: 170 GGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTV 229
Query: 300 KGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCT 359
KGGTGAI+E YHGPG+D+IS
Sbjct: 230 KGGTGAIVE---------------------------------------YHGPGVDSIS-- 248
Query: 360 GMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYD 419
CTGM TICNMGAEIGATTSVFPYN+RM
Sbjct: 249 -------------------------------CTGMATICNMGAEIGATTSVFPYNHRMKK 277
Query: 420 FLKATLREDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLG 479
+L T R DIA A +++ L PD G YDQ+IE++L+ L+PH+NGPFTPDLAHP+ ++G
Sbjct: 278 YLSKTGRADIANLADEFKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEVG 337
Query: 480 EAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRA 539
A+K GWP+DI+V LIGSCTN+SYEDM R A++AK+A+AHGLK + F +TPGSEQIRA
Sbjct: 338 SVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRA 397
Query: 540 TIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPA 599
TIERDG AQ LR+ GG VLANACGPCIGQW+RKD+K GEKNTIV SYNRNFTGRNDANP
Sbjct: 398 TIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPE 457
Query: 600 THAFVTSPELVTALAIKGTLAFDPRSDTLTGSDGKPFKLRDPFGDELPTKGFDPGVDTYQ 659
THAFVTSPE+VTALAI GTL F+P +D LTG DGK FKL P DELP FDPG DTYQ
Sbjct: 458 THAFVTSPEIVTALAIAGTLKFNPETDFLTGKDGKKFKLEAPDADELPRAEFDPGQDTYQ 517
Query: 660 PPPKDGSSLSVDVDPKSQRLQLLEPFDVWDKKDIKDMVVLIKVKGKCTTDHISAAGPWLK 719
PPKD S VDV P SQRLQLLEPFD WD KD++D+ +LIKVKGKCTTDHISAAGPWLK
Sbjct: 518 HPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLK 577
Query: 720 FRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENY 779
FRGHLDNISNNL + A N EN + N V+N +T ++GPV + AR YK G+ WV +GDENY
Sbjct: 578 FRGHLDNISNNLLIGAINIENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENY 637
Query: 780 GEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRIS 839
GEGSS+EH+ALEPRHLGGRAII KSFARIHETNLKKQGLLPLTFA+P+DY+KI P D+++
Sbjct: 638 GEGSSQEHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIHPVDKLT 697
Query: 840 LVGLKDLAPGKPVTAQIKHADGKVEEIKLNHSMNEQQITWFQA 882
+ GLKD APGKP+ IKH +G E I LNH+ NE QI WF+A
Sbjct: 698 IQGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRA 740
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase
Length = 753
Score = 1020 bits (2638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/763 (65%), Positives = 570/763 (74%), Gaps = 72/763 (9%)
Query: 120 SSYEAEQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGV 179
++ E E+ + RLRPDRVAMQDATAQMAMLQFISSGLP+VAVPSTIHCDHLIEAQ+GG
Sbjct: 50 ANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISSGLPKVAVPSTIHCDHLIEAQLGGE 109
Query: 180 EDLKRAKSQNEEVYAFLRSAGAKYGVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHTPN 239
+DL+RAK N+EVY FL +AGAKYGVGFW PGSGIIHQIILENYA+PG+L+IGTDSHTPN
Sbjct: 110 KDLRRAKDINQEVYNFLATAGAKYGVGFWRPGSGIIHQIILENYAYPGVLLIGTDSHTPN 169
Query: 240 XXXXXXXXXXXXXADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTV 299
ADAVDVMA IPWELKCPKVIGV+LTG L GWTS KDVILKVAGILTV
Sbjct: 170 GGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTV 229
Query: 300 KGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCT 359
KGGTGAI+E YHGPG+D+IS
Sbjct: 230 KGGTGAIVE---------------------------------------YHGPGVDSIS-- 248
Query: 360 GMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYD 419
CTGM TICNMGAEIGATTSVFPYN+RM
Sbjct: 249 -------------------------------CTGMATICNMGAEIGATTSVFPYNHRMKK 277
Query: 420 FLKATLREDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLG 479
+L T R DIA A +++ L PD G YDQ+IE++L+ L+PH+NGPFTPDLAHP+ ++G
Sbjct: 278 YLSKTGRADIANLADEFKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEVG 337
Query: 480 EAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRA 539
A+K GWP+DI+V LIGSCTN+SYEDM R A++AK+A+AHGLK + F +TPGSEQIRA
Sbjct: 338 SVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRA 397
Query: 540 TIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPA 599
TIERDG AQ LR+ GG VLANACGPCIGQW+RKD+K GEKNTIV SYNRNFTGRNDANP
Sbjct: 398 TIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPE 457
Query: 600 THAFVTSPELVTALAIKGTLAFDPRSDTLTGSDGKPFKLRDPFGDELPTKGFDPGVDTYQ 659
THAFVTSPE+VTALAI GTL F+P +D LTG DGK FKL P DELP FDPG DTYQ
Sbjct: 458 THAFVTSPEIVTALAIAGTLKFNPETDFLTGKDGKKFKLEAPDADELPRAEFDPGQDTYQ 517
Query: 660 PPPKDGSSLSVDVDPKSQRLQLLEPFDVWDKKDIKDMVVLIKVKGKCTTDHISAAGPWLK 719
PPKD S V V P SQRLQLLEPFD WD KD++D+ +LIKVKGKCTTDHISAAGPWLK
Sbjct: 518 HPPKDSSGQRVAVSPTSQRLQLLEPFDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLK 577
Query: 720 FRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENY 779
FRGHLDNISNNL + A N EN + N V+N +T ++GPV + AR YK G+ WV +GDENY
Sbjct: 578 FRGHLDNISNNLLIGAINIENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENY 637
Query: 780 GEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRIS 839
GEG+SREH+ALEPRHLGGRAII KSFARIHETNLKKQGLLPLTFA+P+DY+KI P D+++
Sbjct: 638 GEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIHPVDKLT 697
Query: 840 LVGLKDLAPGKPVTAQIKHADGKVEEIKLNHSMNEQQITWFQA 882
+ GLKD APGKP+ IKH +G E I LNH+ NE QI WF+A
Sbjct: 698 IQGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRA 740
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 167 bits (422), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 223/854 (26%), Positives = 353/854 (41%), Gaps = 163/854 (19%)
Query: 133 LRPDRVAMQDATAQMAMLQFIS--------SGLPRV---AVPSTIHCDHLIEAQVGGVED 181
+P RV +QD T A++ F + G P P+ + DH I+ D
Sbjct: 77 FKPARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRAD 136
Query: 182 -LKRAK----SQNEEVYAFLR-SAGAKYGVGFWHPGSGIIHQIILE----------NYAF 225
L++ + +N E + FL+ + A + + PGSGIIHQ+ LE Y +
Sbjct: 137 SLQKNQDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYY 196
Query: 226 PGLLMIGTDSHTPNXXXXXXXXXXXXXADAVDVMADIPWELKCPKVIGVRLTGGLKGWTS 285
P L +GTDSHT +A VM P + P+VIG RL G +
Sbjct: 197 PDSL-VGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVT 255
Query: 286 SKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRI 345
S D++L + L G G +E+ GPG+ +S TI NM E GAT + FP
Sbjct: 256 STDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFP----- 310
Query: 346 NEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIG 405
+D +S T + + G Y ++ + GM N ++
Sbjct: 311 -------VDEVSITYL-------VQTGRDEEKLKYIKKY----LQAVGMFRDFNDPSQDP 352
Query: 406 ATTSVFPYNNRMYDFLKATL---------REDIAKEAMK--YQSLLTPDEGAKYDQLIEL 454
T V + LK + ++ +A MK ++S L +G K Q+
Sbjct: 353 DFTQVVELD------LKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPE 406
Query: 455 DLNTLEPHV--NGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNASYEDMSRCAS 512
N + + N FT LAH + ++ I SCTN S + A
Sbjct: 407 HHNDHKTFIYDNTEFT--LAHG---------------SVVIAAITSCTNTSNPSVMLGAG 449
Query: 513 -IAKEAMAHGLKSSTPF---NVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQ 568
+AK+A+ GL + P+ +++PGS + ++ G+ L + G V+ C CIG
Sbjct: 450 LLAKKAVDAGL-NVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGFDVVGYGCMTCIGN 508
Query: 569 WN------RKDVKMGEKNTI-VNSYNRNFTGRNDANPATHA-FVTSPELVTALAIKGTLA 620
+ + G+ + V S NRNF GR +P T A ++ SP LV A AI GT+
Sbjct: 509 SGPLPEPVVEAITQGDLVAVGVLSGNRNFEGR--VHPNTRANYLASPPLVIAYAIAGTIR 566
Query: 621 FDPRSDTL-TGSDGKPFKLRD--PFGDELPT---KGFDPGV--DTYQ------------P 660
D + L + G+ L+D P DE+ + PG+ + YQ
Sbjct: 567 IDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALA 626
Query: 661 PPKD------GSSLSVDVDPKSQRLQLLEPFDVWDKKDIKDMVVLIKVKGKCTTDHISAA 714
P D S + P + L L D+ K I D VL+ + TTDHIS A
Sbjct: 627 TPSDKLFFWNSKSTYIKSPPFFENLTL----DLQPPKSIVDAYVLLNLGDSVTTDHISPA 682
Query: 715 G---------PWLKFRGHLDNISNN---------LFLTATNAENGEMNKVKNQL------ 750
G +L RG N+ + T A +N+ N+
Sbjct: 683 GNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLLNRFLNKQAPQTIH 742
Query: 751 --TGQYGPVNEVARAYKAAGVPWVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARI 808
+G+ V + A Y+ AG+P + + + YG GSSR+ AA P LG +A++ +S+ RI
Sbjct: 743 LPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLAESYERI 802
Query: 809 HETNLKKQGLLPLTFANPSDYDK--IQPNDRISLVGLKDLAPGKPVTAQIKHADGKVEEI 866
H +NL G++PL + + D + +R +++ ++L P V Q+K GK +
Sbjct: 803 HRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPENLKPQMKV--QVKLDTGKTFQA 860
Query: 867 KLNHSMNEQQITWF 880
+ + ++T+F
Sbjct: 861 VMRFD-TDVELTYF 873
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 213/869 (24%), Positives = 336/869 (38%), Gaps = 191/869 (21%)
Query: 133 LRPDRVAMQDATAQMAMLQFIS--------SGLPRVA---VPSTIHCDHLIEAQVGGVED 181
+P RV +QD T +++ F + G P P + DH I+ D
Sbjct: 97 FKPARVILQDFTGVPSVVDFAAMRDAVKKLGGDPEKINPICPVDLVIDHSIQVDFNRRAD 156
Query: 182 -LKRAK----SQNEEVYAFLR-SAGAKYGVGFWHPGSGIIHQIILE----------NYAF 225
L++ + +N E + FL+ + A + PGSGIIHQ+ LE Y +
Sbjct: 157 SLQKNQDLEFERNRERFEFLKWGSKAFRNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYY 216
Query: 226 PGLLMIGTDSHTPNXXXXXXXXXXXXXADAVDVMADIPWELKCPKVIGVRLTGGLKGWTS 285
P L +GTDSHT +A VM P + P+VIG RL G +
Sbjct: 217 PDSL-VGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVT 275
Query: 286 SKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRI 345
S D++L + L G G +E+ G
Sbjct: 276 STDIVLTITKHLRQVGVVGKFVEFFG---------------------------------- 301
Query: 346 NEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIG 405
PG+ +S TI NM E GAT + FP ++ ++I + TG
Sbjct: 302 -----PGVAQLSIADRATIANMCPEYGATATFFPVDE-VSIKYLVQTGR----------- 344
Query: 406 ATTSVFPYNNRMYDFLKATLREDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNG 465
D K + ++ P + + Q++ELDL T+ P +G
Sbjct: 345 -------------DESKVKQIRKYLQAVGMFRDYSDPSQDPDFTQVVELDLKTVVPCCSG 391
Query: 466 PFTP-------DLAHPINK-LGEAAKKNGWPM-----------------------DIKVS 494
P P D+ LG G+ + + ++
Sbjct: 392 PKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPDHHNDHKTFIYNDSEFTLSHGSVVIA 451
Query: 495 LIGSCTNASYEDMSRCAS-IAKEAMAHGL--KSSTPFNVTPGSEQIRATIERDGIAQTLR 551
I S TN S + A +AK+A+ GL K +++PGS + + G+ L
Sbjct: 452 AITSSTNTSNPSVMLGAGLLAKKAVDAGLNVKPYVKTSLSPGSGVVTYYLRESGVMPYLS 511
Query: 552 EFGGTVLANACGPCIGQWN------RKDVKMGEKNTI-VNSYNRNFTGRNDANPATHA-F 603
+ G V+ CIG + + G+ + V S NRNF GR +P T A +
Sbjct: 512 QLGFDVVGYGSMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGR--VHPNTRANY 569
Query: 604 VTSPELVTALAIKGTLAFDPRSDTL-TGSDGKPFKLRD--PFGDELPT---KGFDPGV-- 655
+ SP LV A AI GT+ D + L T + G+ LRD P +E+ + PG+
Sbjct: 570 LASPPLVIAYAIAGTIRIDFEKEPLGTNAKGQQVFLRDIWPTREEIQAVERQYVIPGMFT 629
Query: 656 DTYQPPPKDGSSLSVDVDPKSQRLQLLEP---------------FDVWDKKDIKDMVVLI 700
+ YQ +S + P S +L L P D+ K I D VL+
Sbjct: 630 EVYQKIETVNASWNALAAP-SDKLYLWNPKSTYIKSPPFFENLTLDLQPPKSIVDAYVLL 688
Query: 701 KVKGKCTTDHISAAG---------PWLKFRGHLDNISNN---------LFLTATNAENGE 742
+ TTDHIS AG +L RG N+ + T A
Sbjct: 689 NLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAIMARGTFANIRL 748
Query: 743 MNKVKNQL--------TGQYGPVNEVARAYKAAGVPWVAVGDENYGEGSSREHAALEPRH 794
+N+ N+ +G+ V + A Y+ G P + + + YG GSSR+ AA P
Sbjct: 749 LNRFLNKQAPQTIHLPSGETLDVFDAAERYQQEGHPLIVLAGKEYGSGSSRDWAAKGPFL 808
Query: 795 LGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDK--IQPNDRISLVGLKDLAPGKPV 852
LG +A++ +S+ RIH +NL G++PL + + D + +R +++ ++L P V
Sbjct: 809 LGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADSLGLTGRERYTIIIPENLTPRMHV 868
Query: 853 TAQIKHADGKVEEIKLNHSMNEQQITWFQ 881
Q+K GK + + + ++T+F
Sbjct: 869 --QVKLDTGKTFQAVIRFD-TDVELTYFH 894
>pdb|4F7H|A Chain A, The Crystal Structure Of Kindlin-2 Pleckstrin Homology
Domain In Free Form
Length = 173
Score = 142 bits (359), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
Query: 960 QVTLEGSHISLASPDIMHVPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDA 1019
++TLEG S DI +PEL DY++ KPK+ T+K YK+ W T ++ + YKS+E++
Sbjct: 28 EITLEGGKTSTILGDITSIPELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEES 87
Query: 1020 QHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAACR 1079
+P ++ +LRGCEVTPDVN+S KF IKL +P A+GM+E++LRC+NE+QYA WMAACR
Sbjct: 88 S-GTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMAACR 146
Query: 1080 L 1080
L
Sbjct: 147 L 147
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 29/39 (74%)
Query: 96 NKEEQYASWMAACRLASKGRTLADSSYEAEQTGPHSRLR 134
+ E+QYA WMAACRLASKG+T+ADSSY E S L+
Sbjct: 133 DNEKQYAHWMAACRLASKGKTMADSSYNLEVQNILSFLK 171
>pdb|2LKO|A Chain A, Structural Basis Of Phosphoinositide Binding To Kindlin-2
Pleckstrin Homology Domain In Regulating Integrin
Activation
Length = 138
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 86/116 (74%), Gaps = 5/116 (4%)
Query: 965 GSHISLASPDIMHVPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSP 1024
GSH+ DI +PEL DY++ KPK+ T+K YK+ W T ++ + YKS+E++ +P
Sbjct: 1 GSHMG----DITSIPELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESS-GTP 55
Query: 1025 INEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAACRL 1080
++ +LRGCEVTPDVN+S KF IKL +P A+GM+E++LRC+NE+QYA WMAACRL
Sbjct: 56 AHQMNLRGCEVTPDVNISGQKFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMAACRL 111
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 26/30 (86%)
Query: 96 NKEEQYASWMAACRLASKGRTLADSSYEAE 125
+ E+QYA WMAACRLASKG+T+ADSSY E
Sbjct: 97 DNEKQYAHWMAACRLASKGKTMADSSYNLE 126
>pdb|2YS3|A Chain A, Solution Structure Of The Ph Domain Of Kindlin-3 From Human
Length = 137
Score = 126 bits (317), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 78/103 (75%), Gaps = 1/103 (0%)
Query: 978 VPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTP 1037
+PEL D+LR +P++ T+K Y++ WV +E L +YKS+++A PI + +L+GCEV P
Sbjct: 8 IPELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAP-GDPIQQLNLKGCEVVP 66
Query: 1038 DVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAACRL 1080
DVN+S KF IKL VP+ +GMSE++LRC++E+QYA WMA CRL
Sbjct: 67 DVNVSGQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRL 109
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 25/28 (89%)
Query: 98 EEQYASWMAACRLASKGRTLADSSYEAE 125
E+QYA WMA CRLASKGRT+ADSSY +E
Sbjct: 97 EQQYARWMAGCRLASKGRTMADSSYTSE 124
>pdb|4BBK|A Chain A, Structural And Functional Characterisation Of The Kindlin-1
Pleckstrin Homology Domain
Length = 165
Score = 120 bits (300), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 77/107 (71%), Gaps = 1/107 (0%)
Query: 974 DIMHVPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGC 1033
DI +P+L DYL+ +PK+ +KA K+ W ++ + ++K++E + PI + +LRGC
Sbjct: 21 DITDIPKLADYLKLFRPKKLMLKACKQYWFVFKDTSIAYFKNKE-LEQGEPIEKLNLRGC 79
Query: 1034 EVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAACRL 1080
E+ PDVN+S KF IKL +P ADGM+E++LRC++E+QYA WMAAC L
Sbjct: 80 EIVPDVNVSGRKFGIKLLIPVADGMNEVYLRCDHEDQYARWMAACIL 126
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 29/39 (74%)
Query: 96 NKEEQYASWMAACRLASKGRTLADSSYEAEQTGPHSRLR 134
+ E+QYA WMAAC LASKG+T+ADSSY+ E S L+
Sbjct: 112 DHEDQYARWMAACILASKGKTMADSSYQPEVISILSFLK 150
>pdb|2PKP|A Chain A, Crystal Structure Of 3-Isopropylmalate Dehydratase (Leud)
From Methhanocaldococcus Jannaschii Dsm2661 (Mj1271)
Length = 170
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 772 VAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDK 831
V V EN+G GSSRE A + ++ G +A+I KSFARI N GL+P+ ++ D+
Sbjct: 54 VIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPII----ANTDE 109
Query: 832 IQPNDRISL 840
I+ D + +
Sbjct: 110 IKDGDIVEI 118
>pdb|3Q3W|A Chain A, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni.
pdb|3Q3W|B Chain B, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni
Length = 203
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 29/53 (54%)
Query: 772 VAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFA 824
+ V EN+G GSSREHA G RAII SFA I + N GLL + A
Sbjct: 75 ILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNGLLTIELA 127
>pdb|2HCU|A Chain A, Crystal Structure Of Smu.1381 (Or Leud) From Streptococcus
Mutans
Length = 213
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 772 VAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYD- 830
+ + +N+G GSSREHAA G + I+ SF IH N G+LP+ P +
Sbjct: 88 ILITGDNFGAGSSREHAAWALADYGFKVIVAGSFGDIHYNNDLNNGILPII--QPKEVRD 145
Query: 831 ---KIQPNDRISL 840
K++P D +++
Sbjct: 146 KLAKLKPTDEVTV 158
>pdb|3VBA|A Chain A, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|B Chain B, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|C Chain C, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|D Chain D, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|E Chain E, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|F Chain F, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
Length = 176
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 772 VAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGL 818
+ VG +N+G GSSREHA L + G +I +SFARI N GL
Sbjct: 56 IIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGL 102
>pdb|1V7L|A Chain A, Structure Of 3-Isopropylmalate Isomerase Small Subunit
From Pyrococcus Horikoshii
pdb|1V7L|B Chain B, Structure Of 3-Isopropylmalate Isomerase Small Subunit
From Pyrococcus Horikoshii
Length = 163
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 772 VAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPL 821
V V +N+G GSSRE AAL + LG +I +SF RI N G +PL
Sbjct: 54 VVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIG-IPL 102
>pdb|3H5H|A Chain A, Leud_1-186 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
pdb|3H5H|B Chain B, Leud_1-186 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
Length = 189
Score = 38.5 bits (88), Expect = 0.022, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 772 VAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDK 831
V V ++G GSSREHA G R +I F I N K GLL A
Sbjct: 67 VLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVAQ------ 120
Query: 832 IQPNDRISLVGLKDLAPGKPVTAQIK 857
+D L L + +PG +TA ++
Sbjct: 121 ---DDVELLWKLIEQSPGLEITANLQ 143
>pdb|3H5E|A Chain A, Leud_1-156 Small Subunit Of Isopropylmalate Isomerase
(rv2987c) From Mycobacterium Tuberculosis
pdb|3H5E|B Chain B, Leud_1-156 Small Subunit Of Isopropylmalate Isomerase
(rv2987c) From Mycobacterium Tuberculosis
Length = 159
Score = 38.5 bits (88), Expect = 0.023, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 772 VAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDK 831
V V ++G GSSREHA G R +I F I N K GLL A
Sbjct: 67 VLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVAQ------ 120
Query: 832 IQPNDRISLVGLKDLAPGKPVTAQIK 857
+D L L + +PG +TA ++
Sbjct: 121 ---DDVEILWKLIEQSPGLEITANLQ 143
>pdb|3H5J|A Chain A, Leud_1-168 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
pdb|3H5J|B Chain B, Leud_1-168 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
Length = 171
Score = 38.1 bits (87), Expect = 0.024, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 772 VAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDK 831
V V ++G GSSREHA G R +I F I N K GLL A
Sbjct: 67 VLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVAQ------ 120
Query: 832 IQPNDRISLVGLKDLAPGKPVTAQIK 857
+D L L + +PG +TA ++
Sbjct: 121 ---DDVELLWKLIEQSPGLEITANLQ 143
>pdb|3IVF|A Chain A, Crystal Structure Of The Talin Head Ferm Domain
Length = 371
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 891 WLDSSLSIYEQGVKEFDTLRLRFK-FYSIYDLNAKTDAVQVNL 932
WLD ++ EQGV+E +TL LR K FYS +++++ D VQ+NL
Sbjct: 144 WLDHGRTLREQGVEEHETLLLRRKFFYSDQNVDSR-DPVQLNL 185
>pdb|2COF|A Chain A, Solution Structure Of The C-Terminal Ph Domain Of
Hypothetical Protein Kiaa1914 From Human
Length = 107
Score = 34.7 bits (78), Expect = 0.26, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 998 YKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVN---------LSQGKFII 1048
+K W + R+ L FY+ R ++ + SL GCEV PD + L +G+ +
Sbjct: 22 WKSRWCSVRDNHLHFYQDRNRSKVAQ--QPLSLVGCEVVPDPSPDHLYSFRILHKGEELA 79
Query: 1049 KLEVPAADGM 1058
KLE +++ M
Sbjct: 80 KLEAKSSEEM 89
>pdb|3CT7|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|B Chain B, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|C Chain C, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|D Chain D, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|E Chain E, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|F Chain F, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CTL|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|B Chain B, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|C Chain C, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|D Chain D, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|E Chain E, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|F Chain F, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
Length = 231
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 425 LREDIAKEAMKYQSLL---TPDEGAKY--DQLIELDLNTLEPHVNG-PFTPDLAHPINKL 478
L ++I + MK +L TP E KY + ++ + T++P G PF P++ + +L
Sbjct: 98 LIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFAGQPFIPEMLDKLAEL 157
Query: 479 GEAAKKNGWPMDIKVSLIGSCTNASYEDM 507
++ G +I+V GSC A+YE +
Sbjct: 158 KAWREREGLEYEIEVD--GSCNQATYEKL 184
>pdb|2KC2|A Chain A, Nmr Structure Of The F1 Domain (Residues 86-202) Of The
Talin
Length = 128
Score = 33.9 bits (76), Expect = 0.56, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 891 WLDSSLSIYEQGVKEFDTLRLRFKFY 916
WLD ++ EQGV+E +TL LR KF+
Sbjct: 99 WLDHGRTLREQGVEEHETLLLRRKFF 124
>pdb|1ZJ8|A Chain A, Structure Of Mycobacterium Tuberculosis Nira Protein
pdb|1ZJ8|B Chain B, Structure Of Mycobacterium Tuberculosis Nira Protein
pdb|1ZJ9|A Chain A, Structure Of Mycobacterium Tuberculosis Nira Protein
pdb|1ZJ9|B Chain B, Structure Of Mycobacterium Tuberculosis Nira Protein
Length = 566
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 42/171 (24%)
Query: 349 HGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATT 408
HGPG+D G+ T + +GA +G + + A A T
Sbjct: 246 HGPGLDLWVGGGLSTNPMLAQRVGAWVP-----------------LGEVPEVWA---AVT 285
Query: 409 SVFPYNNRMYDFLKATLREDIAKEAMKYQSLLTPDEG-AKYDQLIELDLNTLEPHVNGPF 467
SVF R Y + + LR AK +K+ L D G AK+ +++E + P ++GP
Sbjct: 286 SVF----RDYGYRR--LR---AKARLKF---LIKDWGIAKFREVLETEY-LKRPLIDGPA 332
Query: 468 TPDLAHPINKLGEAAKKNGW------PMDIKVSLIGSCTNASYEDMSRCAS 512
+ HPI+ +G KNG P+ +VS G+ A + M+R S
Sbjct: 333 PEPVKHPIDHVGVQRLKNGLNAVGVAPIAGRVS--GTILTAVADLMARAGS 381
>pdb|2KMA|A Chain A, Nmr Structure Of The F0f1 Double Domain (Residues 1-202)
Of The Talin Ferm Domain
Length = 178
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 891 WLDSSLSIYEQGVKEFDTLRLRFKFY 916
WLD ++ EQGV+E +TL LR KF+
Sbjct: 149 WLDHGRTLREQGVEEHETLLLRRKFF 174
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of Alpha-
Syntrophin
Length = 263
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 1050 LEVPAADGMSEMFLRCENEEQYASWMAACRLQL 1082
LE+ AADG +FLR ++E SW A + Q+
Sbjct: 229 LEICAADGQDAVFLRAKDEASARSWAGAIQAQI 261
>pdb|2ADZ|A Chain A, Solution Structure Of The Joined Ph Domain Of Alpha1-
Syntrophin
Length = 178
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 1050 LEVPAADGMSEMFLRCENEEQYASWMAACRLQL 1082
LE+ AADG +FLR ++E SW A + Q+
Sbjct: 144 LEICAADGQDAVFLRAKDEASARSWAGAIQAQI 176
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 25/114 (21%)
Query: 280 LKGWTSSKDVILKVAGILTVKGGTGAIIEYHG--PGIDNISCTGMGTICNMGAEIGATTS 337
++ W KD +L GI K + EYHG P + + GM S
Sbjct: 138 MESWYYLKDAVLD-GGIPFNKAYGMSAFEYHGTDPRFNRVFNEGM-----------KNHS 185
Query: 338 VFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGATTSV----FPYNQRINID 387
+ K + YHG G+GT+ ++G +GAT + +P + +N D
Sbjct: 186 IIITKKLLELYHG-------FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFD 232
>pdb|1EDG|A Chain A, Single Crystal Structure Determination Of The Catalytic
Domain Of Celcca Carried Out At 15 Degree C
Length = 380
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 6/113 (5%)
Query: 823 FANPSDYDKIQPNDRISLVGLKDLAPGKPVTAQIKHADGKVEEIKLNHSMNEQQITWFQA 882
F P+D I N+ +V + P A + ADG +N S ++ ++TWF
Sbjct: 236 FRMPND---ISGNNNKIIVSVHAYCPWN--FAGLAMADGGTNAWNINDSKDQSEVTWFMD 290
Query: 883 ELPTRIPAWLDSSLSIYEQGVKEFDTLRLRFKFYSIYDLNAKTDAVQVNLQSN 935
+ + + + I E G + + L+ R ++ S Y AK + L N
Sbjct: 291 NIYNKYTS-RGIPVIIGECGAVDKNNLKTRVEYMSYYVAQAKARGILCILWDN 342
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,624,175
Number of Sequences: 62578
Number of extensions: 1375686
Number of successful extensions: 3071
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2996
Number of HSP's gapped (non-prelim): 60
length of query: 1087
length of database: 14,973,337
effective HSP length: 109
effective length of query: 978
effective length of database: 8,152,335
effective search space: 7972983630
effective search space used: 7972983630
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)