Query psy3833
Match_columns 1087
No_of_seqs 500 out of 2565
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 18:31:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3833.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3833hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0453|consensus 100.0 8E-185 2E-189 1553.6 48.8 737 59-890 36-773 (778)
2 TIGR01340 aconitase_mito aconi 100.0 1E-180 2E-185 1604.3 64.9 706 110-888 15-744 (745)
3 PRK09277 aconitate hydratase; 100.0 1E-166 3E-171 1487.3 57.8 682 126-889 75-881 (888)
4 TIGR01341 aconitase_1 aconitat 100.0 4E-166 8E-171 1481.5 59.0 682 126-889 57-871 (876)
5 TIGR02333 2met_isocit_dHY 2-me 100.0 6E-166 1E-170 1475.1 54.3 685 127-889 65-852 (858)
6 PRK12881 acnA aconitate hydrat 100.0 3E-165 6E-170 1478.1 57.8 684 126-889 74-883 (889)
7 PTZ00092 aconitate hydratase-l 100.0 2E-164 4E-169 1469.8 55.2 680 125-889 80-891 (898)
8 PLN00070 aconitate hydratase 100.0 3E-163 6E-168 1461.1 53.8 685 127-889 114-929 (936)
9 COG1048 AcnA Aconitase A [Ener 100.0 4E-158 8E-163 1391.9 52.3 687 126-889 66-855 (861)
10 PRK07229 aconitate hydratase; 100.0 2E-157 4E-162 1397.0 53.7 632 114-890 2-641 (646)
11 TIGR01342 acon_putative aconit 100.0 4E-154 9E-159 1366.7 52.3 627 125-890 16-649 (658)
12 PRK11413 putative hydratase; P 100.0 7E-151 2E-155 1343.1 51.9 658 111-890 31-749 (751)
13 TIGR00139 h_aconitase homoacon 100.0 5E-141 1E-145 1253.7 48.0 625 125-889 22-708 (712)
14 KOG0452|consensus 100.0 9E-137 2E-141 1151.9 31.0 682 129-889 77-887 (892)
15 cd01584 AcnA_Mitochondrial Aco 100.0 3E-118 7E-123 1010.6 41.0 411 137-619 1-412 (412)
16 COG1049 AcnB Aconitase B [Ener 100.0 3E-119 5E-124 1017.7 21.8 494 27-620 264-812 (852)
17 TIGR00117 acnB aconitate hydra 100.0 9E-118 2E-122 1056.6 34.7 498 28-625 265-814 (844)
18 PRK09238 bifunctional aconitat 100.0 1E-117 2E-122 1058.7 35.5 500 27-625 263-814 (835)
19 PLN00094 aconitate hydratase 2 100.0 1E-117 3E-122 1052.0 34.9 499 28-625 336-888 (938)
20 TIGR01343 hacA_fam homoaconita 100.0 4E-113 9E-118 969.3 38.2 394 125-624 15-412 (412)
21 PRK00402 3-isopropylmalate deh 100.0 7E-113 2E-117 968.6 38.2 407 113-625 1-416 (418)
22 TIGR02083 LEU2 3-isopropylmala 100.0 1E-112 3E-117 965.1 39.0 407 115-625 1-418 (419)
23 TIGR02086 IPMI_arch 3-isopropy 100.0 1E-112 2E-117 965.7 37.4 403 115-624 1-411 (412)
24 COG0065 LeuC 3-isopropylmalate 100.0 4E-112 1E-116 935.9 36.3 409 114-625 2-421 (423)
25 PRK12466 isopropylmalate isome 100.0 5E-112 1E-116 975.4 38.2 428 113-625 2-466 (471)
26 PRK05478 isopropylmalate isome 100.0 8E-111 2E-115 965.5 37.7 428 113-625 1-464 (466)
27 TIGR00170 leuC 3-isopropylmala 100.0 2E-110 4E-115 961.2 38.6 425 114-625 2-464 (465)
28 cd01585 AcnA_Bact Aconitase ca 100.0 2E-110 4E-115 939.3 37.3 379 136-619 1-380 (380)
29 cd01583 IPMI 3-isopropylmalate 100.0 4E-110 9E-115 939.1 37.2 378 137-619 1-382 (382)
30 PF00330 Aconitase: Aconitase 100.0 9E-109 2E-113 950.8 33.6 427 116-617 1-465 (465)
31 cd01581 AcnB Aconitate hydrata 100.0 2E-103 4E-108 894.1 36.5 388 124-619 14-436 (436)
32 cd01582 Homoaconitase Homoacon 100.0 2E-101 4E-106 861.4 34.6 353 137-619 1-363 (363)
33 cd01586 AcnA_IRP Aconitase A c 100.0 2E-100 4E-105 858.1 33.6 362 137-619 1-404 (404)
34 cd01351 Aconitase Aconitase ca 100.0 1.4E-98 3E-103 851.1 35.5 386 137-619 1-389 (389)
35 KOG3727|consensus 100.0 2.9E-52 6.3E-57 471.9 0.4 194 889-1084 239-460 (664)
36 cd01578 AcnA_Mitochon_Swivel M 100.0 1.5E-45 3.1E-50 366.0 8.8 149 701-849 1-149 (149)
37 cd01237 Unc112 Unc-112 pleckst 100.0 2.1E-42 4.6E-47 327.2 9.0 105 979-1084 1-105 (106)
38 KOG0454|consensus 100.0 2.7E-40 5.9E-45 366.8 15.2 368 430-841 14-418 (502)
39 cd01580 AcnA_IRP_Swivel Aconit 100.0 3.8E-36 8.1E-41 302.9 9.5 136 701-841 1-170 (171)
40 TIGR02084 leud 3-isopropylmala 100.0 4.9E-33 1.1E-37 281.1 7.3 152 700-890 4-155 (156)
41 PRK00439 leuD 3-isopropylmalat 100.0 7.5E-33 1.6E-37 282.0 7.4 154 697-890 3-156 (163)
42 PRK14023 homoaconitate hydrata 100.0 1.3E-32 2.8E-37 280.7 6.7 151 700-890 5-155 (166)
43 TIGR02087 LEUD_arch 3-isopropy 100.0 3.5E-32 7.6E-37 274.6 7.2 148 700-889 4-151 (154)
44 cd01579 AcnA_Bact_Swivel Bacte 100.0 5E-32 1.1E-36 263.7 5.3 119 701-841 1-120 (121)
45 PLN00072 3-isopropylmalate iso 100.0 5.1E-31 1.1E-35 281.0 6.1 160 695-890 70-238 (246)
46 COG0066 LeuD 3-isopropylmalate 100.0 2.4E-29 5.1E-34 258.0 5.8 160 695-888 8-174 (191)
47 cd00404 Aconitase_swivel Aconi 99.9 1.1E-27 2.5E-32 220.9 6.1 71 771-841 17-87 (88)
48 TIGR00171 leuD 3-isopropylmala 99.9 2.1E-27 4.7E-32 246.4 5.4 161 694-883 7-174 (188)
49 PRK01641 leuD isopropylmalate 99.9 4.4E-27 9.4E-32 246.3 4.7 163 695-892 8-179 (200)
50 PF00694 Aconitase_C: Aconitas 99.9 2.7E-26 6E-31 226.0 6.6 119 697-825 10-130 (131)
51 cd01577 IPMI_Swivel Aconatase- 99.9 5.1E-26 1.1E-30 211.3 4.3 71 771-841 19-90 (91)
52 cd01674 Homoaconitase_Swivel H 99.9 2E-25 4.4E-30 217.2 3.4 97 703-825 3-101 (129)
53 PRK09238 bifunctional aconitat 99.9 2.2E-24 4.8E-29 259.9 11.0 188 694-921 166-405 (835)
54 KOG0454|consensus 99.9 8.5E-24 1.8E-28 236.1 2.9 401 114-618 66-498 (502)
55 cd01576 AcnB_Swivel Aconitase 99.9 6.6E-23 1.4E-27 201.7 4.9 118 700-842 1-131 (131)
56 TIGR00117 acnB aconitate hydra 99.8 6.2E-21 1.3E-25 229.9 10.7 186 695-921 168-406 (844)
57 PLN00094 aconitate hydratase 2 99.7 1E-16 2.2E-21 193.7 12.1 192 695-921 236-479 (938)
58 PRK14812 hypothetical protein; 99.6 1.5E-16 3.2E-21 155.0 5.0 88 781-883 2-92 (119)
59 KOG3727|consensus 99.6 2.2E-17 4.7E-22 189.6 -2.6 161 890-1055 249-434 (664)
60 PF06434 Aconitase_2_N: Aconit 99.3 1.3E-13 2.7E-18 142.6 0.1 68 28-95 97-194 (204)
61 PF00169 PH: PH domain; Inter 99.0 1.3E-09 2.8E-14 98.6 8.4 96 982-1083 4-104 (104)
62 cd01260 PH_CNK Connector enhan 98.8 2.7E-08 5.9E-13 92.6 8.9 94 981-1081 2-96 (96)
63 cd01246 PH_oxysterol_bp Oxyste 98.6 1.2E-07 2.7E-12 85.9 8.7 90 982-1081 2-91 (91)
64 cd01252 PH_cytohesin Cytohesin 98.5 3.3E-07 7.2E-12 89.9 9.1 97 983-1086 4-117 (125)
65 cd01253 PH_beta_spectrin Beta- 98.4 7.6E-07 1.7E-11 84.1 8.9 89 990-1081 15-104 (104)
66 smart00233 PH Pleckstrin homol 98.4 1.6E-06 3.6E-11 76.6 10.1 97 981-1082 3-101 (102)
67 cd01238 PH_Tec Tec pleckstrin 98.4 7E-07 1.5E-11 85.7 8.1 83 992-1079 15-104 (106)
68 cd01247 PH_GPBP Goodpasture an 98.4 9E-07 2E-11 82.9 8.6 79 994-1079 11-89 (91)
69 cd01265 PH_PARIS-1 PARIS-1 ple 98.4 1.2E-06 2.7E-11 82.4 9.2 91 981-1081 1-93 (95)
70 cd01250 PH_centaurin Centaurin 98.4 1.9E-06 4E-11 78.6 9.4 81 995-1080 13-93 (94)
71 cd01233 Unc104 Unc-104 pleckst 98.4 1.2E-06 2.7E-11 83.0 8.1 88 983-1080 6-96 (100)
72 PF06434 Aconitase_2_N: Aconit 98.2 3.1E-07 6.6E-12 96.0 1.3 159 699-898 3-175 (204)
73 cd01263 PH_anillin Anillin Ple 98.2 4.2E-06 9.1E-11 82.9 8.4 98 981-1079 3-120 (122)
74 cd01251 PH_centaurin_alpha Cen 98.2 5.7E-06 1.2E-10 79.1 8.7 83 994-1083 12-101 (103)
75 cd00900 PH-like Pleckstrin hom 98.2 8.8E-06 1.9E-10 71.9 9.3 96 983-1081 3-99 (99)
76 cd00821 PH Pleckstrin homology 98.1 1.4E-05 3E-10 70.1 8.9 94 983-1081 3-96 (96)
77 cd01257 PH_IRS Insulin recepto 98.1 1.4E-05 3.1E-10 76.6 8.7 87 981-1078 4-98 (101)
78 cd01266 PH_Gab Gab (Grb2-assoc 98.0 1.8E-05 3.9E-10 76.0 8.5 94 981-1079 1-105 (108)
79 cd01235 PH_SETbf Set binding f 97.9 3.4E-05 7.4E-10 72.1 8.4 81 994-1081 11-100 (101)
80 cd01244 PH_RasGAP_CG9209 RAS_G 97.7 0.00011 2.4E-09 70.2 8.4 82 989-1079 12-96 (98)
81 KOG0453|consensus 97.6 7.4E-06 1.6E-10 96.9 -1.5 84 874-969 642-736 (778)
82 cd01236 PH_outspread Outspread 97.5 0.0003 6.5E-09 68.0 8.4 80 993-1078 19-100 (104)
83 cd01245 PH_RasGAP_CG5898 RAS G 97.5 0.00041 8.8E-09 66.5 8.2 79 995-1079 13-96 (98)
84 PF15410 PH_9: Pleckstrin homo 97.4 0.00046 1E-08 67.7 7.5 86 994-1082 22-118 (119)
85 cd01230 PH_EFA6 EFA6 Pleckstri 97.3 0.00089 1.9E-08 66.1 8.7 87 994-1083 22-112 (117)
86 cd01254 PH_PLD Phospholipase D 97.2 0.00085 1.8E-08 66.2 7.7 80 995-1081 30-121 (121)
87 cd01241 PH_Akt Akt pleckstrin 97.2 0.0012 2.5E-08 63.2 8.0 85 994-1080 13-100 (102)
88 PF15409 PH_8: Pleckstrin homo 97.2 0.00099 2.2E-08 62.9 6.9 83 988-1081 4-88 (89)
89 cd01256 PH_dynamin Dynamin ple 97.1 0.0014 3.1E-08 62.8 7.2 79 997-1079 18-102 (110)
90 cd01264 PH_melted Melted pleck 97.0 0.0031 6.7E-08 60.9 8.4 81 994-1081 15-100 (101)
91 COG1049 AcnB Aconitase B [Ener 96.4 0.014 3E-07 70.2 9.9 155 698-887 169-337 (852)
92 PF15413 PH_11: Pleckstrin hom 96.1 0.011 2.3E-07 57.7 6.1 95 983-1080 3-111 (112)
93 cd01237 Unc112 Unc-112 pleckst 96.0 0.0035 7.6E-08 61.0 2.2 27 88-115 80-106 (106)
94 cd01219 PH_FGD FGD (faciogenit 95.6 0.041 8.9E-07 52.6 7.5 80 999-1084 20-101 (101)
95 PF04412 DUF521: Protein of un 95.5 0.04 8.8E-07 64.8 8.7 129 449-608 265-395 (400)
96 cd01220 PH_CDEP Chondrocyte-de 95.2 0.079 1.7E-06 50.9 8.0 83 997-1083 16-98 (99)
97 cd01242 PH_ROK Rok (Rho- assoc 94.7 0.17 3.7E-06 49.8 8.9 97 981-1080 2-108 (112)
98 COG1679 Predicted aconitase [G 93.5 0.23 5E-06 57.7 8.2 68 490-562 289-356 (403)
99 cd01259 PH_Apbb1ip Apbb1ip (Am 93.3 0.14 3E-06 50.6 5.3 90 992-1082 10-108 (114)
100 cd01243 PH_MRCK MRCK (myotonic 92.3 0.67 1.4E-05 46.5 8.5 97 981-1078 4-115 (122)
101 KOG3640|consensus 91.4 0.21 4.6E-06 63.0 4.8 101 980-1081 991-1105(1116)
102 cd01355 AcnX Putative Aconitas 90.0 0.82 1.8E-05 53.9 7.7 71 490-568 278-348 (389)
103 KOG3751|consensus 89.1 0.67 1.4E-05 55.8 6.1 100 976-1082 314-424 (622)
104 cd01221 PH_ephexin Ephexin Ple 86.9 1.8 3.9E-05 43.7 6.8 81 1000-1080 30-120 (125)
105 cd01578 AcnA_Mitochon_Swivel M 79.8 0.072 1.6E-06 54.9 -6.4 74 873-954 58-140 (149)
106 PF09379 FERM_N: FERM N-termin 75.6 1.6 3.4E-05 39.4 1.6 29 889-917 50-80 (80)
107 smart00295 B41 Band 4.1 homolo 71.3 4.3 9.3E-05 42.2 3.8 43 890-932 58-101 (207)
108 KOG4261|consensus 67.9 0.69 1.5E-05 57.6 -3.2 43 890-932 171-213 (1003)
109 PLN00188 enhanced disease resi 66.4 20 0.00044 45.4 8.7 104 979-1084 4-111 (719)
110 cd01234 PH_CADPS CADPS (Ca2+-d 66.0 8.8 0.00019 38.0 4.4 86 988-1081 9-109 (117)
111 KOG0930|consensus 65.6 18 0.00039 41.2 7.3 99 979-1083 260-376 (395)
112 cd01258 PH_syntrophin Syntroph 65.0 17 0.00037 36.0 6.2 82 996-1079 17-106 (108)
113 PTZ00267 NIMA-related protein 64.9 10 0.00022 45.3 5.7 82 998-1082 392-476 (478)
114 PF13380 CoA_binding_2: CoA bi 63.2 8.3 0.00018 37.9 3.8 58 490-564 55-112 (116)
115 cd01249 PH_oligophrenin Oligop 63.0 37 0.00079 33.6 8.0 79 997-1078 16-101 (104)
116 KOG0521|consensus 61.8 6.7 0.00015 50.4 3.5 89 987-1082 280-368 (785)
117 cd01261 PH_SOS Son of Sevenles 61.6 35 0.00077 34.0 7.8 83 999-1084 22-111 (112)
118 cd01222 PH_clg Clg (common-sit 56.7 59 0.0013 31.6 8.2 92 981-1084 6-97 (97)
119 PF15411 PH_10: Pleckstrin hom 54.9 62 0.0013 32.4 8.3 35 1043-1077 81-115 (116)
120 cd01224 PH_Collybistin Collybi 53.6 60 0.0013 32.4 7.8 78 999-1080 20-105 (109)
121 PLN02866 phospholipase D 48.6 39 0.00085 44.7 7.2 79 997-1082 217-307 (1068)
122 cd01223 PH_Vav Vav pleckstrin 42.0 1.2E+02 0.0027 30.6 8.0 83 999-1083 22-112 (116)
123 KOG0690|consensus 38.0 77 0.0017 37.4 6.7 88 983-1081 26-115 (516)
124 COG1833 Uri superfamily endonu 31.5 39 0.00084 34.7 2.7 35 527-568 70-104 (132)
125 KOG2059|consensus 29.9 1.3E+02 0.0027 38.6 7.1 120 949-1079 536-661 (800)
126 KOG3531|consensus 29.2 30 0.00065 44.5 1.8 95 975-1080 920-1017(1036)
127 PRK11413 putative hydratase; P 27.6 9 0.00019 48.9 -3.0 46 891-939 630-685 (751)
128 cd01218 PH_phafin2 Phafin2 Pl 26.4 2.7E+02 0.0058 27.4 7.5 79 1000-1084 21-100 (104)
129 PF08817 YukD: WXG100 protein 26.0 37 0.0008 31.2 1.4 22 891-912 58-79 (79)
130 PF11184 DUF2969: Protein of u 23.9 25 0.00054 32.4 -0.1 33 998-1031 39-71 (71)
131 cd01232 PH_TRIO Trio pleckstri 20.1 6.2E+02 0.013 25.4 8.7 100 981-1082 7-112 (114)
No 1
>KOG0453|consensus
Probab=100.00 E-value=7.9e-185 Score=1553.62 Aligned_cols=737 Identities=70% Similarity=1.145 Sum_probs=715.7
Q ss_pred CCCCcHHHhhhccccccchhhHHHhhCCCcccccccCChhHHHHHHHHHhhhcCCCCchhhhccccccCCCceecccccc
Q psy3833 59 PSSPCKEARAKLVKPKSLVEKARLNVATEKSLYLSSLNKEEQYASWMAACRLASKGRTLADSSYEAEQTGPHSRLRPDRV 138 (1087)
Q Consensus 59 ~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~l~~~~~~~eeq~a~wmaA~~la~kGkTLAdKg~E~VrpGe~V~l~~d~v 138 (1087)
|+.+++....+|-+.|+.+++.+++|. ||++|.|++++++| +.+|.++|+.++||||
T Consensus 36 ~~i~y~~l~~~~~~v~k~l~~~p~tl~-EKIlyshl~~p~~~----------------------~i~Rg~~Yl~lrPdrv 92 (778)
T KOG0453|consen 36 PSIPYKKLLTRLFIVKKRLNKPPLTLT-EKILYSHLDNPPEQ----------------------KIVRGGSYLKLRPDRV 92 (778)
T ss_pred cCCcHHHhhhhHHHHHHHhcCCCchhh-HHHHHhhccCCccc----------------------ceecccceEEEcccce
Confidence 456777777788888888999899998 99999998876543 4589999999999999
Q ss_pred ccccchhhHHHHHHHHcCCCcccCCceeeecccccccCCCchhHHHHhhhhHHHHHHHHHHHHhcCceecCCCCcceeee
Q psy3833 139 AMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGVEDLKRAKSQNEEVYAFLRSAGAKYGVGFWHPGSGIIHQI 218 (1087)
Q Consensus 139 ~~qD~Tg~~a~~~~~~~g~~~v~~p~~~~~DH~v~a~~~~~~d~~~~~~~n~e~~~fl~~~~~~~Gi~~~~pG~GIiHqv 218 (1087)
+|||+|++||++||+..|++++++|+.+||||+|.++.+++.|++++...|+|+|+||.++|++|||.||+||+|||||+
T Consensus 93 a~qDasaqma~LqFms~Gl~kvavPstIhCdhli~a~~gg~~Dl~~a~~~Nkevydfl~saakkygi~Fw~pGsGIiHQI 172 (778)
T KOG0453|consen 93 AMQDASAQMALLQFMSSGLKKVAVPSTIHCDHLIEAQVGGDKDLQRASDLNKEVYDFLESAAKKYGIGFWKPGSGIIHQI 172 (778)
T ss_pred ecccchhhHHHHHHHhcCcccccCCceEEecceeeeccCCcchhhhhhhhhHHHHHHHHHHHHhcCCCccCCCCceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCeEecCCCCccCccccceeeccccHHHHHHHHhcCceEeecCcEEEEEEECcCCCCcchhHHHHHHHHHhc
Q psy3833 219 ILENYAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILT 298 (1087)
Q Consensus 219 ~lE~~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~ 298 (1087)
++|+|++||.+++||||||+++||||+|++|||++|++++|+++||+|++|++++|+|+|+|+.|+|+|||||+++|.|+
T Consensus 173 vlEnYAfPG~m~igTDSHTpn~GGLG~l~igVggaDAvdvmA~~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagilt 252 (778)
T KOG0453|consen 173 VLENYAFPGLMMIGTDSHTPNAGGLGCLAIGVGGADAVDVMATQPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILT 252 (778)
T ss_pred eeecccCCcceEEeccCCCCCCCccceeeeccccchHHHHhcCCCceecCCceEEEEEeeecCCCCChhHHHHhhhceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccEEEEEeCCcccccCccccccccccccccccccccccccchhhcccCCCccccccCCCccccccccccccccccc
Q psy3833 299 VKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGATTSVF 378 (1087)
Q Consensus 299 ~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1087)
++|++|+||||+||||.+|||+.|+|||||
T Consensus 253 vkggtg~iiEy~G~Gv~slSctgm~TIcNM-------------------------------------------------- 282 (778)
T KOG0453|consen 253 VKGGTGHIIEYFGPGVNSLSCTGMATICNM-------------------------------------------------- 282 (778)
T ss_pred ecCccceeEEEecCccceeccccceeeccc--------------------------------------------------
Confidence 999999999999999999999999999999
Q ss_pred cccccccccccccCCCCcccccccccCceeecccCcHHHHHHHHhcCChHHHHHHHHhhc-cCCCCCCCcccEEEEEeCC
Q psy3833 379 PYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAKEAMKYQS-LLTPDEGAKYDQLIELDLN 457 (1087)
Q Consensus 379 ~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL~~~~r~~~~~~~~~~~~-~l~aD~dA~Y~~vieiDLs 457 (1087)
++|.|||+|+||++++|.+||+.++|.++.+.+.++.. ++.||++|.||++||||||
T Consensus 283 ----------------------gaEiGAtTs~FP~n~~m~~yL~atgr~~ia~~a~~~~~~~l~AD~~a~Ydk~ieIdLs 340 (778)
T KOG0453|consen 283 ----------------------GAEIGATTSLFPYNERMIDYLQATGRNEIAREARETLDAILAADKGAHYDKIIEIDLS 340 (778)
T ss_pred ----------------------cccccccccccCCCHHHHHHHHHhCcccchhhhHHhhhhcccCCCCCCcceEEEEEhh
Confidence 78889999999999999999999999998888877554 7899999999999999999
Q ss_pred CCccccccCCCCCccccccccchhhhhCCCccceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEecCcHHH
Q psy3833 458 TLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQI 537 (1087)
Q Consensus 458 ~ieP~vA~P~~Pd~v~~lse~~~~~~~~g~~~~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS~~v 537 (1087)
+|||+|++|++||...|++++.+.++++|||++|..++||||||+||+||..||.|+++|..+|+++++.|.|+|||.+|
T Consensus 341 tL~P~vnGPfTpdl~~pvskl~e~~~kn~wp~~i~~gligSCTNSsyeDm~raa~iv~~a~~~glk~~v~F~VtpgSeqi 420 (778)
T KOG0453|consen 341 TLEPHVNGPFTPDLSTPVSKLGENSEKNGWPIKIKVGLIGSCTNSSYEDMSRAADIVKQAKGKGLKPKVPFYVTPGSEQI 420 (778)
T ss_pred hcccccCCCCCccccChHHHHhHHhhhcCCceeeeeeEEEeecCccHHHHHHHHHHHHHHHhcCCCCCcceEeccChHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcChHHHHHhcCcEEecCCccccccCCCcccccCCcceeEEeecCCCCCCCCCCCCCcceeecCHHHHHHHHHhC
Q psy3833 538 RATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAIKG 617 (1087)
Q Consensus 538 ~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~v~~g~~~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvAAsAiaG 617 (1087)
++.++|+|++++|.++|+++++++||||||+|.|.+|++||.+++|||+||||.||||++|.++.||+||++|+|+||+|
T Consensus 421 rAtierdG~~e~l~~~G~~vLanaCGPCIGqw~r~dvk~GE~ntivts~NRNFtgRnd~np~t~afltSP~iVtA~aiaG 500 (778)
T KOG0453|consen 421 RATIERDGIWETLEKAGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPATHAFLTSPEIVTALAIAG 500 (778)
T ss_pred hhhHhhcchHHHHHhcCCEEcccCcCCcccccccccccCCCcCceeeeecccccccCCCCcchhhcccCHHHHHHHHHhc
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCeeecCCCCCCCCCCCcCCCCccccCCCCCCCCceEecCCCCccccCCCCCCCCcccccccce
Q psy3833 618 TLAFDPRSDTLTGSDGKPFKLRDPFGDELPTKGFDPGVDTYQPPPKDGSSLSVDVDPKSQRLQLLEPFDVWDKKDIKDMV 697 (1087)
Q Consensus 618 ~I~fdp~~d~L~~~dG~~v~l~dP~~~eip~~~~~~~~~~~~~~~~~~~~v~~~~~p~S~~l~~l~pf~~~~~~~i~~ar 697 (1087)
++.|+|+++.|+++||+.|+|++|.++++|+.+|+++.+.|+.|+.+.+.+++.++|.|+|++.|+||++|.++|++++.
T Consensus 501 ~l~fnp~td~l~~~dg~~fk~~~p~g~~lp~~g~d~g~~ty~ap~~~~~~~~v~v~p~s~rlqlLepF~~w~gkd~edl~ 580 (778)
T KOG0453|consen 501 DLSFNPETDSLTAPDGKAFKLEPPIGDELPKKGFDPGQDTYQAPPSSSSVVEVDVDPTSDRLQLLEPFDKWDGKDLEDLK 580 (778)
T ss_pred cccCCCcccccccCCcccccccCCcCCCCcccccCCCcccccCCCCCCCcceeecCCcccchhhcCCCCcccccccccce
Confidence 99999999999999999999999999999999999999999999888888999999999999999999999999999999
Q ss_pred eeeeecCccccccccCCCCcccccCccccccccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEEecCC
Q psy3833 698 VLIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDE 777 (1087)
Q Consensus 698 vLl~~gd~iTTDhIsPAG~~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG~ 777 (1087)
||+++.++|||||||.||+||+||||++|+++|+|+|+.|.++++.|.++|+.+|+|..+|+.++.|++.|++||+|+++
T Consensus 581 ilikv~gkCttDhIsaaGpwlkY~Ghl~nisnn~~igain~En~e~n~~~n~~~ge~~~vp~~~~~yk~~g~~wvvv~~~ 660 (778)
T KOG0453|consen 581 ILIKVKGKCTTDHISAAGPWLKYRGHLENISNNDLIGAINKENGEANCVKNYLTGEFGTVPDTARDYKKHGIRWVVVGDE 660 (778)
T ss_pred EEEEEecccCccccccCCcceeccchhhhcccchhhhhcchhhhhhhhhhhccccccCCcCchhhhHHhcCceeEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecCCCCcccCCCCCEEEEccccCcCCCCcEEEEEE
Q psy3833 778 NYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRISLVGLKDLAPGKPVTAQIK 857 (1087)
Q Consensus 778 nyG~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l~~gD~i~I~~l~~l~pg~~v~v~v~ 857 (1087)
|||.||||||||.+||.+|+++||.+||+|||++|++++|||||+|.++++|++|+..|.+++.++.++.||+++++.|+
T Consensus 661 NyGeGSsREhAAlepr~lGg~~ii~kSFarIhetNlkkqglLpLtfanpadydKi~~~d~~~~~~L~~~~~gkp~t~~vt 740 (778)
T KOG0453|consen 661 NYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFANPADYDKIRPADKVSIKGLTRRTPGKPLTVVVT 740 (778)
T ss_pred ccCCCcchhhhhhchhhcCCcEEEeehhHHHHHhhhhhcceeeeeccCHHHhhhcChhcccchhhhhhhcCCCceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCeEEEEEEEecCCHHHHHHHHhCCCCCchh
Q psy3833 858 HADGKVEEIKLNHSMNEQQITWFQAELPTRIPA 890 (1087)
Q Consensus 858 ~~dG~~~~~~l~~~lt~~E~e~~~aGGiLn~sr 890 (1087)
+.||+.+++.+.|.+++.|++||++|+.||+.+
T Consensus 741 ~~dg~~~~~kl~ht~n~~Qi~~fkaGsaln~~~ 773 (778)
T KOG0453|consen 741 KKDGKEVEIKLNHTGNKLQIEWFKAGSALNVMK 773 (778)
T ss_pred CCCCcEEEEecccccchhhhHhhhcchHHHHHH
Confidence 999999999999999999999999999998754
No 2
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=1.2e-180 Score=1604.28 Aligned_cols=706 Identities=64% Similarity=1.082 Sum_probs=660.7
Q ss_pred hcCCCCchhhhcc-----cc-----------ccCCCceeccccccccccchhhHHHHHHHHcCCCcccCCceeeeccccc
Q psy3833 110 LASKGRTLADSSY-----EA-----------EQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIE 173 (1087)
Q Consensus 110 la~kGkTLAdKg~-----E~-----------VrpGe~V~l~~d~v~~qD~Tg~~a~~~~~~~g~~~v~~p~~~~~DH~v~ 173 (1087)
+..+++||++|.. +. |++|++|.++||+|++||.||||++++|+++|.+++++|..+++||+++
T Consensus 15 ~~~~~~Tl~EKIl~~h~~~~~~~~~~~~~~~v~~g~~v~~~~d~v~~~D~tg~~ai~~f~~~g~~~v~~P~~v~~DH~~~ 94 (745)
T TIGR01340 15 LNSRPLTLAEKILYSHLDDPEESLLSQDIGDVRGKSYLKLRPDRVAMQDASAQMALLQFMTCGLPQVAVPASIHCDHLIV 94 (745)
T ss_pred cCCCCcCHHHHHHHHHhCCcccccccccccccCCCCEEEEeccEEEEeccccHHHHHHHHHcCCCCCCCCCeEEeCCCCc
Confidence 3446777777743 11 5899999999999999999999999999999999999999999999999
Q ss_pred ccCCCchhHHHHhhhhHHHHHHHHHHHHhcCceecCCCCcceeeecccccccCCCeEecCCCCccCccccceeeccccHH
Q psy3833 174 AQVGGVEDLKRAKSQNEEVYAFLRSAGAKYGVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHTPNGGGLGGLCIGVGGA 253 (1087)
Q Consensus 174 a~~~~~~d~~~~~~~n~e~~~fl~~~~~~~Gi~~~~pG~GIiHqv~lE~~~~Pg~~~vGtDSHT~~~GglGala~GvG~~ 253 (1087)
+.++...|++.+..+|.++|+|++|++++|||.|++||+|||||+++|++++||++++||||||||+||||+||||||++
T Consensus 95 ~~~~~~~~~~~a~~~N~e~~~~lr~~a~~~gi~~~~~g~GI~Hqv~~E~~a~PG~~ivGtDSHT~t~GalG~la~GvG~t 174 (745)
T TIGR01340 95 GQKGGDKDLARAIATNKEVFDFLESAGKKYGIGFWKPGSGIIHQIVLENYAFPGLMMLGTDSHTPNAGGLGTIAIGVGGA 174 (745)
T ss_pred cccCccccHHHHhHhHHHHHHHHHHHHHHCCCEEECCCCCeeceEchhhccCCCCeEEccCCCcccccchheeEeccCHH
Confidence 88777778999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceEeecCcEEEEEEECcCCCCcchhHHHHHHHHHhcccCcccEEEEEeCCcccccCccccccccccccccc
Q psy3833 254 DAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIG 333 (1087)
Q Consensus 254 d~a~~ma~g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~ 333 (1087)
|++++|+|++|||++||+|+|+|+|+|++|||+|||||+|++.|+++|++|++|||+|||+++||+++|||||||
T Consensus 175 d~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDviL~ii~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~Ti~NM----- 249 (745)
T TIGR01340 175 DAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGGTGYIVEYFGPGVESLSCTGMATICNM----- 249 (745)
T ss_pred HHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEeCcccccCCHHHhhhhhhc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhhcccCCCccccccCCCccccccccccccccccccccccccccccccCCCCcccccccccCceeecccC
Q psy3833 334 ATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPY 413 (1087)
Q Consensus 334 A~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~ 413 (1087)
++|+|||+|+||+
T Consensus 250 -------------------------------------------------------------------a~E~GA~~gifp~ 262 (745)
T TIGR01340 250 -------------------------------------------------------------------GAEIGATTSIFPF 262 (745)
T ss_pred -------------------------------------------------------------------ccccCceeEEeCC
Confidence 8999999999999
Q ss_pred cHHHHHHHHhcCChHHH---HHHHHhhccCCCCCCCcccEEEEEeCCCCccccccCCCCCccccccccchhhhhCCCccc
Q psy3833 414 NNRMYDFLKATLREDIA---KEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMD 490 (1087)
Q Consensus 414 d~~t~~yL~~~~r~~~~---~~~~~~~~~l~aD~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~~g~~~~ 490 (1087)
|++|++||+.++|++.. .....++..+.+|++|+|+++|+||||+|||+||+|++|||++||+|+.+.+++.|++.+
T Consensus 263 De~T~~yL~~~gr~~~~~~~~~~~~~~~~~~~D~~a~Y~~~i~iDls~leP~vA~P~~Pdn~~~v~e~~~~~~~~g~~~~ 342 (745)
T TIGR01340 263 NEAMSRYLKATNRAQIAEDAKTGQYSFFKLKADEGAQYDELIEIDLSKLEPHINGPFTPDLSTPISKFKETVQKNGWPEK 342 (745)
T ss_pred ChHHHHHHHhcCCchhhhHHHHHHHhcccccCCCCCCeEEEEEEEccceeEeecCCCChhcccChHHhCchhhhcCCCce
Confidence 99999999999997632 222333457899999999999999999999999999999999999999988777888889
Q ss_pred eeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCccccccCCC
Q psy3833 491 IKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWN 570 (1087)
Q Consensus 491 Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~ 570 (1087)
||+||||||||+|++||++||+|||+|+++|++++++++|+|||++|+++|+++|++++|.+|||+|.+||||+|+|+++
T Consensus 343 Id~a~IGSCTNgr~~Dl~~AA~ilk~a~~~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~v~~~gCg~CiG~~~ 422 (745)
T TIGR01340 343 LSAGLIGSCTNSSYEDMSRCASIVKDAEQAGLKPKSPFYVTPGSEQIRATLERDGILQTFEKFGGIVLANACGPCIGQWD 422 (745)
T ss_pred ecEEEEEcCCCCCHHHHHHHHHHhhhhhhCCCCCCCCEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred c-ccccCCcceeEEeecCCCCCCCCCCCCCcceeecCHHHHHHHHHhCccccCCCCCCCCCCCCCCeeecCCCCCCCCCC
Q psy3833 571 R-KDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAIKGTLAFDPRSDTLTGSDGKPFKLRDPFGDELPTK 649 (1087)
Q Consensus 571 ~-~~v~~g~~~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvAAsAiaG~I~fdp~~d~L~~~dG~~v~l~dP~~~eip~~ 649 (1087)
+ +.+++|+.+++|||+||||+||||+++.+++|||||++|||+||+|+|.+||.+|+|.+++|++|+|++|+.+|+|+.
T Consensus 423 ~~~~~~~ge~~~~vst~NRNF~GR~~g~~~~~~yLaSP~~vaAsAlaG~i~~d~~~dpl~~~~g~~v~l~~p~~~e~~~~ 502 (745)
T TIGR01340 423 RKDDVKKGEPNTILTSYNRNFRGRNDGNPATMNFLASPEIVTAMSYAGSLTFNPLTDSLTTPDGKEFKFPAPKGDELPEK 502 (745)
T ss_pred CcCccCCCCceEEEEecCCCCCcCCCCCCCceEEECCHHHHHHHHhhceeecCcccCcccCCCCCEeecCCCCccccchh
Confidence 3 346777876899999999999996677889999999999999999999999999999999999999999999999998
Q ss_pred CcCCCCccccCCCCC-CCCceEecCCCCccccCCCCCCCCcccccccceeeeeecCccccccccCCCCcccccCcccccc
Q psy3833 650 GFDPGVDTYQPPPKD-GSSLSVDVDPKSQRLQLLEPFDVWDKKDIKDMVVLIKVKGKCTTDHISAAGPWLKFRGHLDNIS 728 (1087)
Q Consensus 650 ~~~~~~~~~~~~~~~-~~~v~~~~~p~S~~l~~l~pf~~~~~~~i~~arvLl~~gd~iTTDhIsPAG~~L~~rg~~~~i~ 728 (1087)
.|...+..|+.|+.. .+++.|.|+|+|+||+++|||++|+..++.++|||++++|+||||||||||+||++||++++++
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~i~~~~~f~~~~~~~i~~a~vLlk~gd~iTTDHIsPAG~~L~~rg~~~~i~ 582 (745)
T TIGR01340 503 GFEAGRDTFQAPPGSPNPNVEVAVSPSSDRLQLLEPFEPWNGKDLSGLRVLIKVTGKCTTDHISAAGPWLKYKGHLDNIS 582 (745)
T ss_pred cccCCccceeCCCCCCCCCceEEeCCCCCCCCCCCCCCCCCcCCccCCeEEEEECCCcChhcccccchhHhhcCChhhhh
Confidence 788888899987653 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEEecCCCcCCCccchhhccccccccceEEEEechhHH
Q psy3833 729 NNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARI 808 (1087)
Q Consensus 729 ~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG~nyG~GSSRE~Aa~~~r~lGv~aVIA~SFarI 808 (1087)
+|+|.++.|.+.++.+.+++. +|+..++|+++++|++.++++|||||+||||||||||||+++++|||+||||+||+||
T Consensus 583 ~n~~~~~~n~~~~~~~~~~~~-~g~~~~~~~~a~~~~~~~~~~iivaG~nyG~GSSRE~Aa~~~~~lGv~aVIA~SFaRI 661 (745)
T TIGR01340 583 NNTLIGAVNAETGEVNKAYDL-DGSKGTIPELARDWKARGQPWVVVAEHNYGEGSAREHAALEPRHLGGRIIITKSFARI 661 (745)
T ss_pred cceecccccccCCceeEEEcC-CCCccchHHHHHHHHhCCccEEEEccccccCCCchHHHHHHHHHhCCcEEEEehHHHH
Confidence 999998777666666666665 8998999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccCccceEEecCCCCcccCCCCCEEEEccccCcCC---CCcEEEEEEecCCeEEEEEEEecCCHHHHHHHHhCCC
Q psy3833 809 HETNLKKQGLLPLTFANPSDYDKIQPNDRISLVGLKDLAP---GKPVTAQIKHADGKVEEIKLNHSMNEQQITWFQAELP 885 (1087)
Q Consensus 809 ~~~Nlin~GllpL~f~~~~~~~~l~~gD~i~I~~l~~l~p---g~~v~v~v~~~dG~~~~~~l~~~lt~~E~e~~~aGGi 885 (1087)
||+||+|+|||||+|.++.+|+.|+.||++.+.+++++.| ++.+++.+++.||+.++|+++|++|+.|++||+|||+
T Consensus 662 ~~~Nlin~Gilpl~~~~~~~~~~i~~gd~~~~~~l~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~lt~~E~~~~~aGGi 741 (745)
T TIGR01340 662 HETNLKKQGVLPLTFANEADYDKIQPGDEVATLNLYEMLKNGGGGEVDLRVTKKNGKVFEIKLKHTVSKDQIGFFKAGSA 741 (745)
T ss_pred HHhhhhhcCceeEEecCCccHhhcCCCCEEEEcChhhccccCCCCeEEEEEEeCCCcEEEEEEEeeCCHHHHHHHHcCCc
Confidence 9999999999999999999999999999999999888766 6689988888899999999999999999999999999
Q ss_pred CCc
Q psy3833 886 TRI 888 (1087)
Q Consensus 886 Ln~ 888 (1087)
|||
T Consensus 742 Lny 744 (745)
T TIGR01340 742 LNL 744 (745)
T ss_pred ccC
Confidence 997
No 3
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=1.2e-166 Score=1487.32 Aligned_cols=682 Identities=33% Similarity=0.509 Sum_probs=608.1
Q ss_pred cCCCceeccccccccccchhhHHHHHHHHc-------CCC----cccCCceeeecccccccCCCchh-----HHHHhhhh
Q psy3833 126 QTGPHSRLRPDRVAMQDATAQMAMLQFISS-------GLP----RVAVPSTIHCDHLIEAQVGGVED-----LKRAKSQN 189 (1087)
Q Consensus 126 rpGe~V~l~~d~v~~qD~Tg~~a~~~~~~~-------g~~----~v~~p~~~~~DH~v~a~~~~~~d-----~~~~~~~n 189 (1087)
.++..|.++||||+|||+||+||+++|+++ |.+ +..+|..+|+||+|++++.+..| +..+.++|
T Consensus 75 ~~~~ei~f~p~rvl~QD~TGvpa~vdlaamr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN 154 (888)
T PRK09277 75 KPDREIPFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGTPDAFEKNVELEFERN 154 (888)
T ss_pred CCCceeeeccceeeecccccchHHHHHHHHHHHHHHcCCChhhcCCCCCeEEEeCCCCcCCCCCCcCHHHHHHHHHHHhC
Confidence 567789999999999999999999999875 544 35778899999999999876655 66788999
Q ss_pred HHHHHHHHHHHHhc-CceecCCCCcceeeecccc-------------cccCCCeEecCCCCccCccccceeeccccHHHH
Q psy3833 190 EEVYAFLRSAGAKY-GVGFWHPGSGIIHQIILEN-------------YAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADA 255 (1087)
Q Consensus 190 ~e~~~fl~~~~~~~-Gi~~~~pG~GIiHqv~lE~-------------~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~ 255 (1087)
.|+|.||+|.+++| |+.+++||+|||||+++|+ +++|| +++||||||||+||||+||||||++|+
T Consensus 155 ~er~~fLkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~G~~~~~Pd-tlVGtDSHT~t~GalG~la~GVGg~Ea 233 (888)
T PRK09277 155 EERYQFLKWGQKAFDNFRVVPPGTGICHQVNLEYLAPVVWTREDGELVAYPD-TLVGTDSHTTMINGLGVLGWGVGGIEA 233 (888)
T ss_pred HHHHhHHHHHHHHhcCCCCCCCCCCccceechhhcccceeecCCCceeeccc-eEEecCCCCCCCCcccccEEccCHHHH
Confidence 99999999999999 9999999999999999995 55676 699999999999999999999999999
Q ss_pred HHHHhcCceEeecCcEEEEEEECcCCCCcchhHHHHHHHHHhcccCcccEEEEEeCCcccccCccccccccccccccccc
Q psy3833 256 VDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGAT 335 (1087)
Q Consensus 256 a~~ma~g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~ 335 (1087)
+++|+||++||++||+|+|+|+|+|++|||+|||||+|+++|+++|++|++|||+|||+++||+++|||||||
T Consensus 234 eaam~g~~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNM------- 306 (888)
T PRK09277 234 EAAMLGQPSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANM------- 306 (888)
T ss_pred HHHHhcCcEEeeCCCEEEEEEEeecCCCccHhHHHHHHHHHhcccCcccEEEEEECcccccCCHHHHHHHhcc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhcccCCCccccccCCCccccccccccccccccccccccccccccccCCCCcccccccccCceeecccCcH
Q psy3833 336 TSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNN 415 (1087)
Q Consensus 336 ~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~ 415 (1087)
++|+|||+|+||+|+
T Consensus 307 -----------------------------------------------------------------a~E~GAt~g~fp~De 321 (888)
T PRK09277 307 -----------------------------------------------------------------APEYGATCGFFPIDE 321 (888)
T ss_pred -----------------------------------------------------------------chhhCceEEEecCCh
Confidence 899999999999999
Q ss_pred HHHHHHHhcCChH-HHHHHHHhh---ccCC-CCCCCcccEEEEEeCCCCccccccCCCCCccccccccchhhhh------
Q psy3833 416 RMYDFLKATLRED-IAKEAMKYQ---SLLT-PDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKK------ 484 (1087)
Q Consensus 416 ~t~~yL~~~~r~~-~~~~~~~~~---~~l~-aD~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~------ 484 (1087)
+|++||+.|+|.+ ..+..++|. .+|. +|++|.|+++||||||+|||+||||++|||++||+++.+.+.+
T Consensus 322 ~T~~YL~~tgr~~~~v~~~e~y~ka~~~~~~~D~~a~Y~~vieiDLs~leP~VAgP~~P~~~v~v~e~~~~~~~~~~~~~ 401 (888)
T PRK09277 322 ETLDYLRLTGRDEEQVALVEAYAKAQGLWRDPLEEPVYTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKEAFAKSAELGV 401 (888)
T ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHhhhccCCCCCCEEEEEEEEccceeEecCCCCCcccCcChhhcCcchhhhchhhh
Confidence 9999999999976 455666663 2455 5999999999999999999999999999999999999876431
Q ss_pred -----------CCCcc---ceeEEEEeccCCCChHHHHHHHHHH-HHhHhCCCCC--CCCEEEecCcHHHHHHHHHcChH
Q psy3833 485 -----------NGWPM---DIKVSLIGSCTNASYEDMSRCASIA-KEAMAHGLKS--STPFNVTPGSEQIRATIERDGIA 547 (1087)
Q Consensus 485 -----------~g~~~---~Id~vfIGSCTn~~~~dl~aAA~il-k~a~~~~~~~--~v~~~v~PgS~~v~~~l~~~G~~ 547 (1087)
.++++ +|++||||||||+|++|++.||.|| |+|+++|+++ .||++|+|||++|+++|+++|++
T Consensus 402 ~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~ 481 (888)
T PRK09277 402 QGFGLDEAEEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAPGSKVVTDYLEKAGLL 481 (888)
T ss_pred hhhhhhhhhcCCCccccCCceEEEEEeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEEEeCCCHHHHHHHHHCChH
Confidence 23333 7999999999999999977777765 6777776554 48999999999999999999999
Q ss_pred HHHHhcCcEEecCCccccccCCCccccc-------CCcc-eeEEeecCCCCCCCCCCCCCcceeecCHHHHHHHHHhCcc
Q psy3833 548 QTLREFGGTVLANACGPCIGQWNRKDVK-------MGEK-NTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAIKGTL 619 (1087)
Q Consensus 548 ~~l~~aGa~i~~pGCg~CiG~~~~~~v~-------~g~~-~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvAAsAiaG~I 619 (1087)
++|.++||+|.+||||+|+||++. ..+ +++. .++|||+||||+||||+ ..+.+|||||+||||+||+|+|
T Consensus 482 ~~l~~aGf~i~~~GCg~CiG~~g~-l~~~~~~~i~~~e~~~~~VsS~NRNFeGR~g~-~~~~~yLaSP~lvaA~AlaG~I 559 (888)
T PRK09277 482 PYLEALGFNLVGYGCTTCIGNSGP-LPPEIEKAINDNDLVVTAVLSGNRNFEGRIHP-LVKANYLASPPLVVAYALAGTV 559 (888)
T ss_pred HHHHHcCCEEeCCCccccccCCCC-CCchhhhhcccCCceeEEEeccCCCCCCCCCC-CCCceEEcCHHHHHHHHHcCcc
Confidence 999999999999999999999864 222 2332 36899999999999985 3467899999999999999999
Q ss_pred ccCCCCCCC-CCCCCCCeeecC--CCCCCCCCC--------CcC-------CCCccccCCCCCCCCceEecCCCCccccC
Q psy3833 620 AFDPRSDTL-TGSDGKPFKLRD--PFGDELPTK--------GFD-------PGVDTYQPPPKDGSSLSVDVDPKSQRLQL 681 (1087)
Q Consensus 620 ~fdp~~d~L-~~~dG~~v~l~d--P~~~eip~~--------~~~-------~~~~~~~~~~~~~~~v~~~~~p~S~~l~~ 681 (1087)
+||+.+|+| .+++|++|||+| |+.+|+++. .|. .+++.|+..+.. .+..|+|+|+||||+.
T Consensus 560 ~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~-~~~~~~w~~~StyI~~ 638 (888)
T PRK09277 560 DIDLEKDPLGTDKDGNPVYLKDIWPSDEEIDAVVAKAVKPEMFRKEYADVFEGDERWNAIEVP-EGPLYDWDPDSTYIRN 638 (888)
T ss_pred ccCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHccCCHHHhhhhcccccCCchhhccCCCC-CCCccccCCCCCcccC
Confidence 999999999 789999999999 988888752 122 234567765443 3688999999999999
Q ss_pred CCCCCCC-----cccccccceeeeeecCccccccccCCCC---------cccc----------------------cCccc
Q psy3833 682 LEPFDVW-----DKKDIKDMVVLIKVKGKCTTDHISAAGP---------WLKF----------------------RGHLD 725 (1087)
Q Consensus 682 l~pf~~~-----~~~~i~~arvLl~~gd~iTTDhIsPAG~---------~L~~----------------------rg~~~ 725 (1087)
||+|++| +..++.++|||+++||+||||||||||. ||++ ||+|+
T Consensus 639 pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~Rgtfa 718 (888)
T PRK09277 639 PPYFEGMLAEPGPVRDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYGSRRGNHEVMMRGTFA 718 (888)
T ss_pred CCCCCcccccCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccccccccchhhhheecc
Confidence 9999887 3578999999999999999999999997 7865 44566
Q ss_pred ccc--ccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEEecCCCcCCCccchhhccccccccceEEEEe
Q psy3833 726 NIS--NNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENYGEGSSREHAALEPRHLGGRAIIVK 803 (1087)
Q Consensus 726 ~i~--~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG~nyG~GSSRE~Aa~~~r~lGv~aVIA~ 803 (1087)
|++ |+++.+ .+++++++.|+|+.+++||+|++|+++|.|+|||||+|||||||||||||++++|||+||||+
T Consensus 719 Nir~~N~l~~g------~egg~t~~~p~g~~~~i~daA~~y~~~g~~~iivag~nyG~GSSRe~Aa~~~~~lgi~avia~ 792 (888)
T PRK09277 719 NIRIRNEMVPG------VEGGYTRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSSRDWAAKGTRLLGVKAVIAE 792 (888)
T ss_pred ccchhhhcccC------CccceEEECCCCcEeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEe
Confidence 664 344432 357789999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHhhhhccCccceEEecCCCCcccC--CCCCEEEEccccCcCCCCcEEEEEEecCCeEEEEEEEecC-CHHHHHHH
Q psy3833 804 SFARIHETNLKKQGLLPLTFANPSDYDKI--QPNDRISLVGLKDLAPGKPVTAQIKHADGKVEEIKLNHSM-NEQQITWF 880 (1087)
Q Consensus 804 SFarI~~~Nlin~GllpL~f~~~~~~~~l--~~gD~i~I~~l~~l~pg~~v~v~v~~~dG~~~~~~l~~~l-t~~E~e~~ 880 (1087)
||+|||++||+|+|||||+|+++++|+.| +++|+++|.++.++.||+++++++++.+|+.++|+++|++ |+.|++||
T Consensus 793 sf~rI~~~Nli~~Gilpl~~~~~~~~~~lgl~g~e~~~i~~l~~l~p~~~v~v~~~~~~G~~~~~~~~~r~dt~~Ei~y~ 872 (888)
T PRK09277 793 SFERIHRSNLVGMGVLPLQFKPGESRKTLGLDGTETFDIEGLEDLKPGATVTVVITRADGEVVEFPVLCRIDTAVEVDYY 872 (888)
T ss_pred cHHHHHHhhHhhcCcceeecCCcccHHHhCCCCCceEEEcCcccCCCCCEEEEEEEeCCCCEEEEEEEEecCCHHHHHHH
Confidence 99999999999999999999999999985 8999999999877999999999998999999999999999 99999999
Q ss_pred HhCCCCCch
Q psy3833 881 QAELPTRIP 889 (1087)
Q Consensus 881 ~aGGiLn~s 889 (1087)
+|||+|||.
T Consensus 873 ~~GGiL~yv 881 (888)
T PRK09277 873 RNGGILQYV 881 (888)
T ss_pred HcCCHHHHH
Confidence 999999975
No 4
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=3.8e-166 Score=1481.51 Aligned_cols=682 Identities=33% Similarity=0.518 Sum_probs=608.9
Q ss_pred cCCCceeccccccccccchhhHHHHHHHHc-------CCC----cccCCceeeecccccccCCCchh-----HHHHhhhh
Q psy3833 126 QTGPHSRLRPDRVAMQDATAQMAMLQFISS-------GLP----RVAVPSTIHCDHLIEAQVGGVED-----LKRAKSQN 189 (1087)
Q Consensus 126 rpGe~V~l~~d~v~~qD~Tg~~a~~~~~~~-------g~~----~v~~p~~~~~DH~v~a~~~~~~d-----~~~~~~~n 189 (1087)
..+..|.++||||+|||+||+||++||+++ |.+ ...+|..+|+||+|++++.+..| +..+.++|
T Consensus 57 ~~~~ei~f~p~RvllQD~TGvpa~vdlaAmrda~~~~G~d~~~inp~vPvdlviDHsv~~d~~~~~da~~~n~~~e~~rN 136 (876)
T TIGR01341 57 VADTEIAFKPARVVMQDFTGVPAVVDLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTEYALEFNMELEFERN 136 (876)
T ss_pred CCCceeccCchhheeccccCchHHHHHHHHHHHHHHcCCCHHHcCCCCCcceEeCCCCCCCCCCCcCHHHHHHHHHHHhC
Confidence 345689999999999999999999999775 776 45788999999999999877666 67888999
Q ss_pred HHHHHHHHHHHHhc-CceecCCCCcceeeecccc--------------cccCCCeEecCCCCccCccccceeeccccHHH
Q psy3833 190 EEVYAFLRSAGAKY-GVGFWHPGSGIIHQIILEN--------------YAFPGLLMIGTDSHTPNGGGLGGLCIGVGGAD 254 (1087)
Q Consensus 190 ~e~~~fl~~~~~~~-Gi~~~~pG~GIiHqv~lE~--------------~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d 254 (1087)
.|+|.||+|.+++| ++.+++||+|||||+++|+ +++|| +++||||||||+||||+||||||++|
T Consensus 137 ~ery~fLkw~~~~f~~~~v~ppg~GI~HqV~lE~la~~v~~~~~~g~g~a~Pd-tlVGtDSHT~t~GalG~la~GVGg~E 215 (876)
T TIGR01341 137 LERYQFLKWAQKAFRNFRVVPPGTGIIHQVNLEYLATVVFKAEVDGELTAYPD-SLVGTDSHTTMINGLGVLGWGVGGIE 215 (876)
T ss_pred HHHHhHHHHHHHHcccCCCCCCCCCeeceechhhcccceeecccCCcceeccc-eeeecCCCCCCCCeecceEecccHHH
Confidence 99999999999999 6999999999999999996 77888 59999999999999999999999999
Q ss_pred HHHHHhcCceEeecCcEEEEEEECcCCCCcchhHHHHHHHHHhcccCcccEEEEEeCCcccccCcccccccccccccccc
Q psy3833 255 AVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGA 334 (1087)
Q Consensus 255 ~a~~ma~g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A 334 (1087)
++++|+||++||++||+|+|+|+|+|++|||+|||||+|+++|+++|++|++|||+|||+++||+++|||||||
T Consensus 216 aeavmlgq~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~VEF~G~gv~~LS~~dRaTIaNM------ 289 (876)
T TIGR01341 216 AEAAMLGQPYYMNVPEVIGVKLTGKLQEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANM------ 289 (876)
T ss_pred HHHHHhCCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccCcceEEEEEeCccccccCHhHHhhhhhc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhhcccCCCccccccCCCccccccccccccccccccccccccccccccCCCCcccccccccCceeecccCc
Q psy3833 335 TTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYN 414 (1087)
Q Consensus 335 ~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d 414 (1087)
++|+|||+|+||+|
T Consensus 290 ------------------------------------------------------------------a~E~GAt~g~fp~D 303 (876)
T TIGR01341 290 ------------------------------------------------------------------APEYGATCGFFPID 303 (876)
T ss_pred ------------------------------------------------------------------chhhCceEEEEcCC
Confidence 89999999999999
Q ss_pred HHHHHHHHhcCChH-HHHHHHHhhc---cCCCC-CCCcccEEEEEeCCCCccccccCCCCCccccccccchhhhh-----
Q psy3833 415 NRMYDFLKATLRED-IAKEAMKYQS---LLTPD-EGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKK----- 484 (1087)
Q Consensus 415 ~~t~~yL~~~~r~~-~~~~~~~~~~---~l~aD-~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~----- 484 (1087)
++|++||+.|+|.+ .++++++|++ +|.+| ++|+|++++|||||+|||+||||++|||++||+++.+.+.+
T Consensus 304 e~T~~YL~~tgr~~~~~~l~~~y~k~~~l~~~d~~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~ 383 (876)
T TIGR01341 304 DVTLQYLRLTGRDGDHVELVEKYARAQGLFYDDSEEPRYTDVVELDLSDVEPSVAGPKRPQDRIPLREVKAKFSKELEKN 383 (876)
T ss_pred hhHHHHHHhCCCCHHHHHHHHHHHHhcccccCCCCCCceeEEEEEEcccceeeccCCCChhhccChhhcchhhhhHhhhh
Confidence 99999999999976 6788887863 67888 89999999999999999999999999999999999876311
Q ss_pred -----------------CCCcc-----ceeEEEEeccCCCChHHHHHHHHHH-HHhHhCCCC--CCCCEEEecCcHHHHH
Q psy3833 485 -----------------NGWPM-----DIKVSLIGSCTNASYEDMSRCASIA-KEAMAHGLK--SSTPFNVTPGSEQIRA 539 (1087)
Q Consensus 485 -----------------~g~~~-----~Id~vfIGSCTn~~~~dl~aAA~il-k~a~~~~~~--~~v~~~v~PgS~~v~~ 539 (1087)
.|++. +|++||||||||+|++|++.||.|| |+|+++|++ +.||++|+|||++|++
T Consensus 384 ~~~~~~~~~~~~~~~~~~g~~~~l~~g~I~~a~IgSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~ 463 (876)
T TIGR01341 384 GGDKGFTLRKEPLKKKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTD 463 (876)
T ss_pred cccccccchhhhhheeccCcceecCCCcEEEEEeeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHH
Confidence 12221 5999999999999999977776666 667777655 4589999999999999
Q ss_pred HHHHcChHHHHHhcCcEEecCCccccccCCCcccccCC-------c-ceeEEeecCCCCCCCCCCCCCcceeecCHHHHH
Q psy3833 540 TIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMG-------E-KNTIVNSYNRNFTGRNDANPATHAFVTSPELVT 611 (1087)
Q Consensus 540 ~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~v~~g-------~-~~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvA 611 (1087)
+|+++|++++|.++||+|.+||||+|+||++. ..+++ + .+++|||+||||+||||+. ...+|||||+|||
T Consensus 464 ~l~~~Gl~~~L~~aGf~i~~~GCg~CiG~~g~-l~~~~e~ai~~~~l~~~~VsS~NRNFeGR~g~~-~~~~yLaSP~lVa 541 (876)
T TIGR01341 464 YLAESGLLPYLEELGFNLVGYGCTTCIGNSGP-LPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPL-VKGNYLASPPLVV 541 (876)
T ss_pred HHHHCCcHHHHHHcCCEEecCCccccccCCCC-CCcchhcccccCCceEEEEeccCCCCCCCCCCC-CCceEECCHHHHH
Confidence 99999999999999999999999999999853 22222 2 1378999999999999853 3468999999999
Q ss_pred HHHHhCccccCCCCCCC-CCCCCCCeeecC--CCCCCCCC------------CCcC---CCCccccCCCCCCCCceEecC
Q psy3833 612 ALAIKGTLAFDPRSDTL-TGSDGKPFKLRD--PFGDELPT------------KGFD---PGVDTYQPPPKDGSSLSVDVD 673 (1087)
Q Consensus 612 AsAiaG~I~fdp~~d~L-~~~dG~~v~l~d--P~~~eip~------------~~~~---~~~~~~~~~~~~~~~v~~~~~ 673 (1087)
|+||+|+|.+|+.+|+| .+++|++|||+| |+.+|+.+ ..|. .+++.|+..+.+ .+..|.|+
T Consensus 542 A~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~~-~~~~~~w~ 620 (876)
T TIGR01341 542 AYALAGNIDINLYTEPIGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYENIFEGNERWNSIKTP-SGDTYSWD 620 (876)
T ss_pred HHHHhCCcccCccCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCHHHcccccccccCCcccccccCCC-CCCccccC
Confidence 99999999999999999 579999999999 98887743 1222 345678765443 45789999
Q ss_pred CCCccccCCCCCCC-----CcccccccceeeeeecCccccccccCCCC---------cccccC-----------------
Q psy3833 674 PKSQRLQLLEPFDV-----WDKKDIKDMVVLIKVKGKCTTDHISAAGP---------WLKFRG----------------- 722 (1087)
Q Consensus 674 p~S~~l~~l~pf~~-----~~~~~i~~arvLl~~gd~iTTDhIsPAG~---------~L~~rg----------------- 722 (1087)
|+||||+.||+|++ |+..++.++|||+++||+||||||||||. ||+++|
T Consensus 621 ~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~e 700 (876)
T TIGR01341 621 EKSTYIRLPPFFEEMKQDPEEVEDIKGARILLLLGDSITTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHE 700 (876)
T ss_pred CCCCcccCCCCCCccccCCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccccCHH
Confidence 99999999999975 55678999999999999999999999998 476544
Q ss_pred -----ccccc--cccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEEecCCCcCCCccchhhccccccc
Q psy3833 723 -----HLDNI--SNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENYGEGSSREHAALEPRHL 795 (1087)
Q Consensus 723 -----~~~~i--~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG~nyG~GSSRE~Aa~~~r~l 795 (1087)
+|+|+ .|+++.| .+++.++++|+|+.+++||+|++|+++|+|+|||||+|||||||||||||++++|
T Consensus 701 vm~rgtFanir~~N~l~~g------~egg~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~~yG~GSSRe~Aa~~~~~l 774 (876)
T TIGR01341 701 VMMRGTFANIRIKNLMVKG------KEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGSSRDWAAKGTKLL 774 (876)
T ss_pred HHHHhhcccchhhhhcccC------ccCceeEecCCCccccHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHh
Confidence 56666 3444432 2578899999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEechhHHHhhhhccCccceEEecCCCCccc--CCCCCEEEEccccCcCCCCcEEEEEEecCCeEEEEEEEecC-
Q psy3833 796 GGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDK--IQPNDRISLVGLKDLAPGKPVTAQIKHADGKVEEIKLNHSM- 872 (1087)
Q Consensus 796 Gv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~--l~~gD~i~I~~l~~l~pg~~v~v~v~~~dG~~~~~~l~~~l- 872 (1087)
||+||||+||+|||++||+|+|||||+|+++.+|+. ++++|+++|.++.++.||+++++++.+.+|+.++|++.+++
T Consensus 775 Gv~avia~sf~rI~~~N~~~~Gilpl~~~~~~~~~~l~l~g~e~~~i~~~~~l~pg~~v~v~~~~~~g~~~~~~~~~r~d 854 (876)
T TIGR01341 775 GVKAVIAESFERIHRSNLVGMGVIPLQFPQGEDAETLGLTGDETIDIDGIKDLKPGKEVTVTFTNSKGEKITFKCVLRID 854 (876)
T ss_pred CCcEEEEccHHHHHHhhHhhcCcceEecCCCCCHHHhCCCCCCeEEEcCccccCCCCEEEEEEEcCCCCEEEEEEEEecC
Confidence 999999999999999999999999999999999997 68899999998878899999999998889999999999999
Q ss_pred CHHHHHHHHhCCCCCch
Q psy3833 873 NEQQITWFQAELPTRIP 889 (1087)
Q Consensus 873 t~~E~e~~~aGGiLn~s 889 (1087)
|+.|++||+|||+|||.
T Consensus 855 t~~E~~~~~~GGiL~yv 871 (876)
T TIGR01341 855 TEVELDYYKHGGILQYV 871 (876)
T ss_pred CHHHHHHHHcCCHHHHH
Confidence 99999999999999975
No 5
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=5.7e-166 Score=1475.09 Aligned_cols=685 Identities=29% Similarity=0.452 Sum_probs=602.8
Q ss_pred CCCceeccccccccccchhhHHHHHHHHc--------CCCc---ccCCceeeecccccccCCC-chh-----HHHHhhhh
Q psy3833 127 TGPHSRLRPDRVAMQDATAQMAMLQFISS--------GLPR---VAVPSTIHCDHLIEAQVGG-VED-----LKRAKSQN 189 (1087)
Q Consensus 127 pGe~V~l~~d~v~~qD~Tg~~a~~~~~~~--------g~~~---v~~p~~~~~DH~v~a~~~~-~~d-----~~~~~~~n 189 (1087)
.+..|.++|+||+|||+||+||++||+++ |.+. ..+|..+|+||+|++++.+ ..| ++.++++|
T Consensus 65 ~~~ei~f~P~RV~mqD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vP~dlviDHsv~vd~~g~~~da~~~n~~~e~~rN 144 (858)
T TIGR02333 65 RDLDFPWYPARVVCHDILGQTALVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVEYGGFDPDAFEKNRAIEDRRN 144 (858)
T ss_pred CCCeeccCcceeeeccccCcchhhhHhhhHHHHHHcCCChhhcCCCCCCeEEeCCcceeccCCCCcchhHHHHHHHHhhh
Confidence 34569999999999999999999999753 3343 5789999999999999988 455 35666799
Q ss_pred HHHHHHHHHHHHhc-CceecCCCCcceeeecccc----------cccCCCeEecCCCCccCccccceeeccccHHHHHHH
Q psy3833 190 EEVYAFLRSAGAKY-GVGFWHPGSGIIHQIILEN----------YAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDV 258 (1087)
Q Consensus 190 ~e~~~fl~~~~~~~-Gi~~~~pG~GIiHqv~lE~----------~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ 258 (1087)
+|+|+||+|+++.| |+.|||||.|||||+++|+ +++|| +++||||||||+||||+||||||++|++++
T Consensus 145 ~Ery~FLkwa~~af~~~~~~ppG~GI~HQV~lE~la~vv~~~~G~a~Pd-~ivGTDSHT~~~GgLG~lg~GVGg~Ea~aa 223 (858)
T TIGR02333 145 EDRFHFINWTKTAFKNVDVIPAGNGIMHQINLEKMSPVIQVKNGVAFPD-TCVGTDSHTPHVDALGVIAIGVGGLEAETV 223 (858)
T ss_pred HHHHHHHHHHHHHhCCcEEeCCCCCEeeeEchhhccccccccCCcccCC-eEEecCCCCCCCCccceeEecCCHHHHHHH
Confidence 99999999999966 9999999999999999997 88997 599999999999999999999999999999
Q ss_pred HhcCceEeecCcEEEEEEECcCCCCcchhHHHHHHHHHhcccCcccEEEEEeCCcccccCcccccccccccccccccccc
Q psy3833 259 MADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSV 338 (1087)
Q Consensus 259 ma~g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~ 338 (1087)
|+||++||++||+|+|+|+|+|++|||+|||||+|++.|+++|++|++|||+|||+++||+++|+|||||
T Consensus 224 mlg~p~~l~vPevIgV~LtG~L~~gVtakDliL~i~~~Lr~~Gvvgk~VEF~G~gv~~LS~~dRaTIaNM---------- 293 (858)
T TIGR02333 224 MLGRASMMRLPDIVGVELTGKRQPGITATDIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNM---------- 293 (858)
T ss_pred HhCCeeeeeCCcEEEEEEEeecCCCCCHhHHHHHHHHHHhhcCccceEEEEeCCccccCCHHHHHHHhcc----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhcccCCCccccccCCCccccccccccccccccccccccccccccccCCCCcccccccccCceeecccCcHHHH
Q psy3833 339 FPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMY 418 (1087)
Q Consensus 339 ~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~ 418 (1087)
++|+|||+|+||+|++|+
T Consensus 294 --------------------------------------------------------------a~E~GAt~gifp~De~T~ 311 (858)
T TIGR02333 294 --------------------------------------------------------------TPEYGATAAMFYIDEQTI 311 (858)
T ss_pred --------------------------------------------------------------chhhCceEEEECCChhHH
Confidence 899999999999999999
Q ss_pred HHHHhcCChH-HHHHHHHhh---ccCC-CCCCCcccEEEEEeCCCCccccccCCCCCccccccccchhhhhC-------C
Q psy3833 419 DFLKATLRED-IAKEAMKYQ---SLLT-PDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKN-------G 486 (1087)
Q Consensus 419 ~yL~~~~r~~-~~~~~~~~~---~~l~-aD~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~~-------g 486 (1087)
+||+.|+|++ ..+.+++|. .++. +|++|+|+++||||||+|||+||+|++|||++||+|+++..... |
T Consensus 312 ~YL~~tgR~~~~~~lve~y~k~~~l~~d~d~~a~Y~~vieiDLs~leP~VAgP~~Pd~~vpl~e~~~~~~~~~~~~~~~g 391 (858)
T TIGR02333 312 DYLKLTGREPEQVKLVETYAKAAGLWADSLKHAVYERVLEFDLSSVVRNMAGPSNPHARVPTSDLAARGIAGPAEEQPEG 391 (858)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHhhcCcCCCCCeEEEEEEEcccceecccCCCChhhcCCHHHhhhccccccccccccC
Confidence 9999999986 456666664 2444 67999999999999999999999999999999999987542111 1
Q ss_pred C--ccceeEEEEeccCCCChHH-HHHHHHHHHHhHhCCCCCC--CCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCC
Q psy3833 487 W--PMDIKVSLIGSCTNASYED-MSRCASIAKEAMAHGLKSS--TPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANA 561 (1087)
Q Consensus 487 ~--~~~Id~vfIGSCTn~~~~d-l~aAA~ilk~a~~~~~~~~--v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pG 561 (1087)
. ..+|++||||||||+|++| |.+|+.|+|+|+++|++++ ||++|+|||++|+++|+++|++++|.++||.|.+||
T Consensus 392 ~l~~g~V~ia~IgSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~G 471 (858)
T TIGR02333 392 LMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPELEQLGFGIVAFA 471 (858)
T ss_pred cccCCceeEEEEECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEeCCc
Confidence 1 1148999999999999999 5555555578887777655 899999999999999999999999999999999999
Q ss_pred ccccccCCCcccccCC---------cceeEEeecCCCCCCCCCCCCCcceeecCHHHHHHHHHhCccccCCCCCCC-CCC
Q psy3833 562 CGPCIGQWNRKDVKMG---------EKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAIKGTLAFDPRSDTL-TGS 631 (1087)
Q Consensus 562 Cg~CiG~~~~~~v~~g---------~~~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvAAsAiaG~I~fdp~~d~L-~~~ 631 (1087)
||+|+||++. +.++ ..+++|||+||||+||||++ .+++|||||++|||+||+|+|+|||.+|+| .++
T Consensus 472 Cg~CiG~~G~--l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~-~~~~yLASP~lVaA~AlaG~I~~d~~~dplg~~~ 548 (858)
T TIGR02333 472 CTTCNGMSGA--LDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPY-AKQAFLASPPLVVAYAIAGTIRFDIEKDVLGVDA 548 (858)
T ss_pred chhccCcCCC--CCcchhhhhcccCceeEEEeccCCCCCCCCCCC-cceeEecCHHHHHHHHHhCceeeccCcCccccCC
Confidence 9999999854 3222 12589999999999999853 568999999999999999999999999999 579
Q ss_pred CCCCeeecC--CCCCCCCC---CCcCCC--CccccCCCC-----CCCCceEecCCCCccccCCCCCCCC--cccccccce
Q psy3833 632 DGKPFKLRD--PFGDELPT---KGFDPG--VDTYQPPPK-----DGSSLSVDVDPKSQRLQLLEPFDVW--DKKDIKDMV 697 (1087)
Q Consensus 632 dG~~v~l~d--P~~~eip~---~~~~~~--~~~~~~~~~-----~~~~v~~~~~p~S~~l~~l~pf~~~--~~~~i~~ar 697 (1087)
||++|+|+| |+.+||++ ..+++. ...|..... ...+..|+|+|+|+||+.+|+|+.. +..++.++|
T Consensus 549 ~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~~~~~~~~~~~~~~~~~w~~~Styi~~pp~f~~~~~~~~~i~~ar 628 (858)
T TIGR02333 549 DGKPIRLKDIWPSDEEIDAVVAAAVKPEQFRKVYIPMFDLDDTQSAVSPLYDWRPMSTYIRRPPYWEGALAGERTLKGMR 628 (858)
T ss_pred CCCeEeecCCCCChHHHHHHHHhccChhhhhhhccccccCCccccCcCCCccCCCCCceecCCCCccCCCCcccCccCcE
Confidence 999999999 99999997 556554 344543211 1235679999999999998888654 236899999
Q ss_pred eeeeecCccccccccC---------CCCcccccCcccccccc----------cccccc-ccc--------cC---cccce
Q psy3833 698 VLIKVKGKCTTDHISA---------AGPWLKFRGHLDNISNN----------LFLTAT-NAE--------NG---EMNKV 746 (1087)
Q Consensus 698 vLl~~gd~iTTDhIsP---------AG~~L~~rg~~~~i~~~----------~l~~~~-n~~--------~g---~~~~~ 746 (1087)
||+++||+|||||||| ||+||+++|+.++++|+ |+.+.+ |.+ .+ +++.+
T Consensus 629 vL~~lgdsiTTDHISPAg~i~~~spAG~yL~~~Gv~~~~fnsyg~rRgN~~vm~rgtF~n~rl~N~l~~~~g~~~~g~~t 708 (858)
T TIGR02333 629 PLAILGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNEMVKNDGSVKQGSLA 708 (858)
T ss_pred eeeecCCCccccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHHhhcccccchhhhhhccccCccccCcee
Confidence 9999999999999995 46799999999998877 223321 221 12 46678
Q ss_pred EeecCCCcCChHHHHHHHHHcCCCcEEecCCCcCCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecCC
Q psy3833 747 KNQLTGQYGPVNEVARAYKAAGVPWVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANP 826 (1087)
Q Consensus 747 ~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG~nyG~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~ 826 (1087)
+++|+|+.+++||+|++|+++|+|+|||||+|||||||||||||++++||+++|||+||+|||++||+|+|||||+|.++
T Consensus 709 ~~~p~g~~~~i~daA~~Y~~~g~p~iivag~nyG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~Nl~~~G~lpl~f~~~ 788 (858)
T TIGR02333 709 RIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTNLVGMGVLPLEFKPG 788 (858)
T ss_pred EecCCCcEeeHHHHHHHHHHcCCeEEEEccCccCCCCcHHHHHHHHHHhCceEEEEccHHHHHHhhhhhcCcceEEeCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccc--CCCCCEEEEccccCcCCCCcEEEEEEecCCeEEEEEEEecC-CHHHHHHHHhCCCCCch
Q psy3833 827 SDYDK--IQPNDRISLVGLKDLAPGKPVTAQIKHADGKVEEIKLNHSM-NEQQITWFQAELPTRIP 889 (1087)
Q Consensus 827 ~~~~~--l~~gD~i~I~~l~~l~pg~~v~v~v~~~dG~~~~~~l~~~l-t~~E~e~~~aGGiLn~s 889 (1087)
.+|++ |++.|+|+|.+ ++.||+++++++++.||+.++|++.|++ |+.|++||+|||+|||.
T Consensus 789 ~~~~~l~l~g~e~~~i~~--~~~p~~~~~v~~~~~~g~~~~~~~~~r~dt~~ei~y~~~GgiL~~v 852 (858)
T TIGR02333 789 TNRHTLGLDGTETFDVVG--EITPRADLTLVVTRKNGEKLEVPVTCRLDTAEEVSVYEAGGVLQRF 852 (858)
T ss_pred CChhhcCCCCCeeEEecc--CCCCCCeEEEEEEeCCCCEEEEEEEEEcCCHHHHHHHHcCCHHHHH
Confidence 99998 79999999953 4789999999999999999999999999 99999999999999986
No 6
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=2.9e-165 Score=1478.05 Aligned_cols=684 Identities=32% Similarity=0.506 Sum_probs=603.7
Q ss_pred cCCCceeccccccccccchhhHHHHHHHHc-------CCC-c---ccCCceeeecccccccCCCchh-----HHHHhhhh
Q psy3833 126 QTGPHSRLRPDRVAMQDATAQMAMLQFISS-------GLP-R---VAVPSTIHCDHLIEAQVGGVED-----LKRAKSQN 189 (1087)
Q Consensus 126 rpGe~V~l~~d~v~~qD~Tg~~a~~~~~~~-------g~~-~---v~~p~~~~~DH~v~a~~~~~~d-----~~~~~~~n 189 (1087)
..+..|.++||||++||+||+||+++|+++ |.+ + ..+|..+|+||+|++++.+..| +..+.++|
T Consensus 74 ~~~~ei~~~pdRvllqD~Tg~~a~~dlaamr~a~~~~G~d~~~~~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN 153 (889)
T PRK12881 74 KSDDEIPFVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRN 153 (889)
T ss_pred CCCceeccccceeeeecccCccHHHHHHHHHHHHHHcCCChhhcCCCCCcceEeCCCCccCCCCCCCHHHHHHHHHHHhh
Confidence 345679999999999999999999999654 765 2 4567789999999999877665 66788999
Q ss_pred HHHHHHHHHHHHhc-CceecCCCCcceeeecccc--------------cccCCCeEecCCCCccCccccceeeccccHHH
Q psy3833 190 EEVYAFLRSAGAKY-GVGFWHPGSGIIHQIILEN--------------YAFPGLLMIGTDSHTPNGGGLGGLCIGVGGAD 254 (1087)
Q Consensus 190 ~e~~~fl~~~~~~~-Gi~~~~pG~GIiHqv~lE~--------------~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d 254 (1087)
.|+|.||+|.+++| |+.+++||+|||||+++|+ +++|| +++||||||||+||||+||||||++|
T Consensus 154 ~ery~fLkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~~~~g~~~Pd-tlVGtDSHT~~~galG~lg~GVGg~E 232 (889)
T PRK12881 154 AERYQFLKWGMQAFDNFRVVPPGTGIMHQVNLEYLARVVHTKEDDGDTVAYPD-TLVGTDSHTTMINGIGVLGWGVGGIE 232 (889)
T ss_pred HHHhChHHHHHHHccCCCCCCCCCCccceEchhhhcccceecccCCcceecCC-eEEecCCCCCCCccccceEecccHHH
Confidence 99999999999999 9999999999999999996 77897 68999999999999999999999999
Q ss_pred HHHHHhcCceEeecCcEEEEEEECcCCCCcchhHHHHHHHHHhcccCcccEEEEEeCCcccccCcccccccccccccccc
Q psy3833 255 AVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGA 334 (1087)
Q Consensus 255 ~a~~ma~g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A 334 (1087)
++++|+||++||++||+|+|+|+|+|++|||+|||||+|+++|+++|++|++|||+||||++||+++|||||||
T Consensus 233 aeaamlgq~~~~~vPevigV~l~G~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNM------ 306 (889)
T PRK12881 233 AEAVMLGQPVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANM------ 306 (889)
T ss_pred HHHHHhCCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccccceEEEEEECccccccCHHHHHHHhcc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhhcccCCCccccccCCCccccccccccccccccccccccccccccccCCCCcccccccccCceeecccCc
Q psy3833 335 TTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYN 414 (1087)
Q Consensus 335 ~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d 414 (1087)
++|+|||+|+||+|
T Consensus 307 ------------------------------------------------------------------a~E~GAt~g~fp~D 320 (889)
T PRK12881 307 ------------------------------------------------------------------APEYGATMGFFPVD 320 (889)
T ss_pred ------------------------------------------------------------------cHhhCceEEEecCC
Confidence 89999999999999
Q ss_pred HHHHHHHHhcCChHH-HHHHHHhhc---cC-CCCCCCcccEEEEEeCCCCccccccCCCCCccccccccchhhhh-----
Q psy3833 415 NRMYDFLKATLREDI-AKEAMKYQS---LL-TPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKK----- 484 (1087)
Q Consensus 415 ~~t~~yL~~~~r~~~-~~~~~~~~~---~l-~aD~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~----- 484 (1087)
++|++||+.|+|.+. .++++.|.+ ++ .+|++|.|+++++||||+|||+||||++|||++||+++...+.+
T Consensus 321 e~T~~YL~~tgr~~~~v~l~e~y~ka~~l~~~~d~~a~Y~~vieiDLs~veP~vAgP~~P~~~v~l~e~~~~~~~~~~~~ 400 (889)
T PRK12881 321 EQTLDYLRLTGRTEAQIALVEAYAKAQGLWGDPKAEPRYTRTLELDLSTVAPSLAGPKRPQDRIALGNVKSAFSDLFSKP 400 (889)
T ss_pred hhHHHHHHhcccchHHHHHHHHHHHHHHhhcCcCCCCceeEEEEEEccceeEeccCCCChhhCcCchhcCcCHHHHhhhH
Confidence 999999999999763 555666532 33 58999999999999999999999999999999999999842210
Q ss_pred ---C----------CCcc---ceeEEEEeccCCCChHHHHHHHHHH-HHhHhCCCCCC--CCEEEecCcHHHHHHHHHcC
Q psy3833 485 ---N----------GWPM---DIKVSLIGSCTNASYEDMSRCASIA-KEAMAHGLKSS--TPFNVTPGSEQIRATIERDG 545 (1087)
Q Consensus 485 ---~----------g~~~---~Id~vfIGSCTn~~~~dl~aAA~il-k~a~~~~~~~~--v~~~v~PgS~~v~~~l~~~G 545 (1087)
. +.++ +|++||||||||+|++||+.||.|| |+|+++|++++ ||++|+|||++|+++|+++|
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~G 480 (889)
T PRK12881 401 VAENGFAKKAQTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLAPGSKVVTEYLERAG 480 (889)
T ss_pred HHhhhhhcccccCCCccccCccEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEeCCCHHHHHHHHHcC
Confidence 1 1122 6999999999999999988666666 67777776554 89999999999999999999
Q ss_pred hHHHHHhcCcEEecCCccccccCCCcc------cccCCc-ceeEEeecCCCCCCCCCCCCCcceeecCHHHHHHHHHhCc
Q psy3833 546 IAQTLREFGGTVLANACGPCIGQWNRK------DVKMGE-KNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAIKGT 618 (1087)
Q Consensus 546 ~~~~l~~aGa~i~~pGCg~CiG~~~~~------~v~~g~-~~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvAAsAiaG~ 618 (1087)
++++|.++||+|.+||||+|+||++.. .+.+|+ ..++|||+||||+||||++ ...+|||||+||||+||+|+
T Consensus 481 l~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~g~~~~~~VsS~NRNFeGR~g~~-~~~~yLaSP~lvaA~AlaG~ 559 (889)
T PRK12881 481 LLPYLEKLGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPN-IKANFLASPPLVVAYALAGT 559 (889)
T ss_pred cHHHHHHcCCEEeCCcchhhhccCCCCCchhhhhcccCCceeEEEeecCCCCCCCCCCC-CCceEECCHHHHHHHHhcCc
Confidence 999999999999999999999998541 122343 2478999999999999964 46789999999999999999
Q ss_pred cccCCCCCCC-CCCCCCCeeecC--CCCCCCCC---CCcCC------------CCccccCCCCCCCCceEecCCCCcccc
Q psy3833 619 LAFDPRSDTL-TGSDGKPFKLRD--PFGDELPT---KGFDP------------GVDTYQPPPKDGSSLSVDVDPKSQRLQ 680 (1087)
Q Consensus 619 I~fdp~~d~L-~~~dG~~v~l~d--P~~~eip~---~~~~~------------~~~~~~~~~~~~~~v~~~~~p~S~~l~ 680 (1087)
|+||+.+|+| .++||++|||+| |+.+|+++ ..+++ ++..|+..... .+..|.|+|+||||+
T Consensus 560 i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~-~~~~~~wd~~StyI~ 638 (889)
T PRK12881 560 VRRDLMTEPLGKGKDGRPVYLKDIWPSSAEIDALVAFAVDPEDFRKNYAEVFKGSELWAAIEAP-DGPLYDWDPKSTYIR 638 (889)
T ss_pred eecCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHcCCCHHHhhhhhhhhcCCccccccccCC-CCCeeccCCCCCccc
Confidence 9999999999 789999999999 99888873 22222 23446654433 357899999999999
Q ss_pred CCCCCC-----CCcccccccceeeeeecCccccccccCCC---------CcccccCc----------------------c
Q psy3833 681 LLEPFD-----VWDKKDIKDMVVLIKVKGKCTTDHISAAG---------PWLKFRGH----------------------L 724 (1087)
Q Consensus 681 ~l~pf~-----~~~~~~i~~arvLl~~gd~iTTDhIsPAG---------~~L~~rg~----------------------~ 724 (1087)
.+|+|+ +|+..++.++|||+++||+|||||||||| +||+++|+ |
T Consensus 639 ~pPff~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsyg~rRgN~evm~rgtF 718 (889)
T PRK12881 639 RPPFFDFSMGPAASIATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSRRGNHEVMMRGTF 718 (889)
T ss_pred CCCCCcccccCCCCCCCccCCEEEEEECCCCcccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHhhhhcc
Confidence 977774 35678999999999999999999999998 58866554 5
Q ss_pred cccc-ccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEEecCCCcCCCccchhhccccccccceEEEEe
Q psy3833 725 DNIS-NNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENYGEGSSREHAALEPRHLGGRAIIVK 803 (1087)
Q Consensus 725 ~~i~-~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG~nyG~GSSRE~Aa~~~r~lGv~aVIA~ 803 (1087)
+|++ .|+|.+. .+++.++++|+|+.+++||+|++|+++|+|+|||||+|||||||||||||++++|||+||||+
T Consensus 719 ~nir~~N~l~~~-----~egg~t~~~p~g~~~~i~daA~~y~~~g~p~iIvaG~nyG~GSSRe~Aa~~~~~lGv~aVIA~ 793 (889)
T PRK12881 719 ANVRIKNLMIPG-----KEGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYGTGSSRDWAAKGTRLLGVKAVIAE 793 (889)
T ss_pred ccCcccceeccc-----cccCeeEeCCCCcEeeHHHHHHHHHhcCCceEEEecCccCCCCcHHHHHHHHHHhCCcEEEEe
Confidence 5654 5555432 267889999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHhhhhccCccceEEecCCCCcc--cCCCCCEEEEccccC-cCCCCcEEEEEEecCCeEEEEEEEecC-CHHHHHH
Q psy3833 804 SFARIHETNLKKQGLLPLTFANPSDYD--KIQPNDRISLVGLKD-LAPGKPVTAQIKHADGKVEEIKLNHSM-NEQQITW 879 (1087)
Q Consensus 804 SFarI~~~Nlin~GllpL~f~~~~~~~--~l~~gD~i~I~~l~~-l~pg~~v~v~v~~~dG~~~~~~l~~~l-t~~E~e~ 879 (1087)
||+||||+||+|||||||+|.++.+|+ .|+++|+|+|+++.+ +.|++++++++++.+|+.++|++.+++ |+.|++|
T Consensus 794 SFaRIh~~Nli~~GilpL~f~~~~~~~~l~l~g~d~i~I~~~~~~i~p~~~v~v~~~~~~G~~~~~~~~~r~dt~~e~e~ 873 (889)
T PRK12881 794 SFERIHRSNLVGMGVLPLQFKGGDSRQSLGLTGGETFDIEGLPGEIKPRQDVTLVIHRADGSTERVPVLCRIDTPIEVDY 873 (889)
T ss_pred cHHHHHHhhhhhcCcceEEeCCccchhhcCcCCCCEEEEeCCccccCCCCeEEEEEEeCCCCEEEEEEEeccCCHHHHHH
Confidence 999999999999999999999999998 789999999998865 789999999998899999999999988 9999999
Q ss_pred HHhCCCCCch
Q psy3833 880 FQAELPTRIP 889 (1087)
Q Consensus 880 ~~aGGiLn~s 889 (1087)
|+|||+|||.
T Consensus 874 ~~aGGiL~yv 883 (889)
T PRK12881 874 YKAGGILPYV 883 (889)
T ss_pred HHcCCHHHHH
Confidence 9999999975
No 7
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=1.7e-164 Score=1469.82 Aligned_cols=680 Identities=31% Similarity=0.479 Sum_probs=594.5
Q ss_pred ccCCCceeccccccccccchhhHHHHHHHHc-------CCC----cccCCceeeecccccccCCCchhH-----HHHhhh
Q psy3833 125 EQTGPHSRLRPDRVAMQDATAQMAMLQFISS-------GLP----RVAVPSTIHCDHLIEAQVGGVEDL-----KRAKSQ 188 (1087)
Q Consensus 125 VrpGe~V~l~~d~v~~qD~Tg~~a~~~~~~~-------g~~----~v~~p~~~~~DH~v~a~~~~~~d~-----~~~~~~ 188 (1087)
..++..|.++||||+|||+||+||++||+++ |.+ ...+|..+|+||+|++++.+..|. ..+.++
T Consensus 80 ~~~~~ei~~~p~Rvl~QD~Tgvpa~vdlaamR~~~~~~g~d~~~inp~vpvdlviDHsvq~d~~~~~da~~~n~~~e~~r 159 (898)
T PTZ00092 80 SKKQIEIPFKPARVLLQDFTGVPAVVDLAAMRDAMKRLGGDPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFER 159 (898)
T ss_pred CCCCceeeeccceEEeecccCchHHHHHHHHHHHHHHcCCChhhcCCCCCcceecCCCCCCCCCCCcCHHHHHHHHHHHh
Confidence 3567889999999999999999999998775 776 457889999999999998776653 677889
Q ss_pred hHHHHHHHHHHHHhc-CceecCCCCcceeeecccccc----------cCCCeEecCCCCccCccccceeeccccHHHHHH
Q psy3833 189 NEEVYAFLRSAGAKY-GVGFWHPGSGIIHQIILENYA----------FPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVD 257 (1087)
Q Consensus 189 n~e~~~fl~~~~~~~-Gi~~~~pG~GIiHqv~lE~~~----------~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~ 257 (1087)
|.|+|.|++|.+++| |++|++||+|||||+++|+|+ +||+ ++||||||||+||||+||||||++|+++
T Consensus 160 N~ery~fl~~~~~~f~~~~v~pPg~GI~HQV~lE~la~vv~~e~G~~~Pd~-lvGtDSHT~~~GalG~la~GVGg~Eaea 238 (898)
T PTZ00092 160 NLERFEFLKWGSKAFKNLLIVPPGSGIVHQVNLEYLARVVFNKDGLLYPDS-VVGTDSHTTMINGLGVLGWGVGGIEAEA 238 (898)
T ss_pred hHHHhChHHhhhhhhcCCcccCCCCceeceechhhhccccccccCcccCCe-EEecCCCCCCCCcccccEecccHHHHHH
Confidence 999999999999999 999999999999999999544 7887 8999999999999999999999999999
Q ss_pred HHhcCceEeecCcEEEEEEECcCCCCcchhHHHHHHHHHhcccCcccEEEEEeCCcccccCccccccccccccccccccc
Q psy3833 258 VMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTS 337 (1087)
Q Consensus 258 ~ma~g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~ 337 (1087)
+|+||++||++||+|+|+|+|+|++|||+|||||+|+++|+++|++|++|||+|||+++||+++|||||||
T Consensus 239 amlgq~~~~~vPevvgV~LtG~L~~gVtakDliL~i~~~L~~~G~vgk~vEF~G~gv~~LSv~dRaTIaNM--------- 309 (898)
T PTZ00092 239 VMLGQPISMVLPEVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANM--------- 309 (898)
T ss_pred HHhcCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccCccceEEEEEccccccCcHHHhhhhhcc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhcccCCCccccccCCCccccccccccccccccccccccccccccccCCCCcccccccccCceeecccCcHHH
Q psy3833 338 VFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRM 417 (1087)
Q Consensus 338 ~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t 417 (1087)
++|+|||+|+||+|++|
T Consensus 310 ---------------------------------------------------------------a~E~GAt~gifp~De~T 326 (898)
T PTZ00092 310 ---------------------------------------------------------------APEYGATMGFFPIDEKT 326 (898)
T ss_pred ---------------------------------------------------------------ccccCceEEEecCChhH
Confidence 89999999999999999
Q ss_pred HHHHHhcCChHH-HHHHHHhh---ccCC-CCCCCcccEEEEEeCCCCccccccCCCCCccccccccchhhh--------h
Q psy3833 418 YDFLKATLREDI-AKEAMKYQ---SLLT-PDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAK--------K 484 (1087)
Q Consensus 418 ~~yL~~~~r~~~-~~~~~~~~---~~l~-aD~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~--------~ 484 (1087)
++||+.|+|++. .+++++|. .++. +|++|.|+++||||||+|||+||||++|||++||+++.+.++ .
T Consensus 327 ~~YL~~tgR~~~~~~lve~y~ka~~l~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~~~~~~~~ 406 (898)
T PTZ00092 327 LDYLKQTGRSEEKVELIEKYLKANGLFRTYAEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKDFTACLSAPVGF 406 (898)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHhhcCCCCCceeEEEEEEcccceEeccCCCChhhccCccccCCCHHHhhhhhhhh
Confidence 999999999863 44555553 3566 899999999999999999999999999999999999975322 1
Q ss_pred CCCc------------------cc-----eeEEEEeccCCCChHHHHHHHHHH-HHhHhCCCCCC--CCEEEecCcHHHH
Q psy3833 485 NGWP------------------MD-----IKVSLIGSCTNASYEDMSRCASIA-KEAMAHGLKSS--TPFNVTPGSEQIR 538 (1087)
Q Consensus 485 ~g~~------------------~~-----Id~vfIGSCTn~~~~dl~aAA~il-k~a~~~~~~~~--v~~~v~PgS~~v~ 538 (1087)
.+++ .+ |++||||||||+|++|++.||.|| |+|+++|++++ ||++|+|||++|+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLakkAv~kG~kv~p~Vk~~v~PGS~~V~ 486 (898)
T PTZ00092 407 KGFGIPEEKHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIKTSLSPGSKVVT 486 (898)
T ss_pred hccCCCccccccccccccCCcccccCCCceeEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHH
Confidence 1221 11 899999999999999966666555 67777776555 8999999999999
Q ss_pred HHHHHcChHHHHHhcCcEEecCCccccccCCCccc------ccCCcc-eeEEeecCCCCCCCCCCCCCcceeecCHHHHH
Q psy3833 539 ATIERDGIAQTLREFGGTVLANACGPCIGQWNRKD------VKMGEK-NTIVNSYNRNFTGRNDANPATHAFVTSPELVT 611 (1087)
Q Consensus 539 ~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~------v~~g~~-~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvA 611 (1087)
++|+++|++++|.++||+|.+||||+|+||+++.. +.+++. .++|+|+||||+||||+. ...+|||||+|||
T Consensus 487 ~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~g~~-~~~~yLaSP~lva 565 (898)
T PTZ00092 487 KYLEASGLLKYLEKLGFYTAGYGCMTCIGNSGDLDPEVSEAITNNDLVAAAVLSGNRNFEGRVHPL-TRANYLASPPLVV 565 (898)
T ss_pred HHHHHcCcHHHHHHcCCEEeCCccccccCcCCCCCchhhhhhccCCeeeeeecccCCCCCCCCCCC-CCceEEcCHHHHH
Confidence 99999999999999999999999999999987511 112332 247899999999999853 3458999999999
Q ss_pred HHHHhCccccCCCCCCCC-CCCCCCeeecC--CCCCCCCCC---CcC------------CCCccccCCCCCCCCceEecC
Q psy3833 612 ALAIKGTLAFDPRSDTLT-GSDGKPFKLRD--PFGDELPTK---GFD------------PGVDTYQPPPKDGSSLSVDVD 673 (1087)
Q Consensus 612 AsAiaG~I~fdp~~d~L~-~~dG~~v~l~d--P~~~eip~~---~~~------------~~~~~~~~~~~~~~~v~~~~~ 673 (1087)
|+||+|+|+||+.+|+|. +++|++|||+| |+.+|+++. ..+ .+++.|+..+.. .+..|.|+
T Consensus 566 A~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~-~~~~~~w~ 644 (898)
T PTZ00092 566 AYALAGRVNIDFETEPLGSDKTGKPVFLRDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQVP-KGKLYEWD 644 (898)
T ss_pred HHHHcCceecccccCCcccCCCCCEeeeeCCCCChHHHHHHHHccCCHHHhhHhhhcccCCchhhhhccCC-CCCccccC
Confidence 999999999999999995 99999999999 988888752 111 134556655443 35789999
Q ss_pred CCCccccCCCCCC-----CCcccccccceeeeeecCccccccccCCCC---------cccc-------------------
Q psy3833 674 PKSQRLQLLEPFD-----VWDKKDIKDMVVLIKVKGKCTTDHISAAGP---------WLKF------------------- 720 (1087)
Q Consensus 674 p~S~~l~~l~pf~-----~~~~~~i~~arvLl~~gd~iTTDhIsPAG~---------~L~~------------------- 720 (1087)
|+||||+.||+|+ +|+..++.++|||+++||+||||||||||+ ||.+
T Consensus 645 ~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~~ 724 (898)
T PTZ00092 645 EKSTYIHNPPFFQTMELEPPPIKSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDFNTYGARRGNDE 724 (898)
T ss_pred CCCCcccCCCCccccccCCCCCCCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCch
Confidence 9999999999997 466789999999999999999999999997 9988
Q ss_pred ---cCcccccc-ccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEEecCCCcCCCccchhhcccccccc
Q psy3833 721 ---RGHLDNIS-NNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENYGEGSSREHAALEPRHLG 796 (1087)
Q Consensus 721 ---rg~~~~i~-~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG~nyG~GSSRE~Aa~~~r~lG 796 (1087)
||+|+|++ .|+|.|. +++.+++.|+|+.+++||+|++|+++|+|+|||||+|||||||||||||++++||
T Consensus 725 vm~RgtF~Niri~N~l~g~------~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivaG~nyG~GSSRe~AA~~~~~lG 798 (898)
T PTZ00092 725 VMVRGTFANIRLINKLCGK------VGPNTVHVPTGEKMSIYDAAEKYKQEGVPLIVLAGKEYGSGSSRDWAAKGPYLQG 798 (898)
T ss_pred hhcceeccccceeeeeccC------CCCceEeCCCCcEecHHHHHHHHHHcCCceEEEccCccCCCCcHHHHHHHHHHhC
Confidence 56777776 6666643 4567888899999999999999999999999999999999999999999999999
Q ss_pred ceEEEEechhHHHhhhhccCccceEEecCCCCccc--CCCCCEEEEcc-ccCcCCCCcEEEEEEecCCeEEEEEEEecC-
Q psy3833 797 GRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDK--IQPNDRISLVG-LKDLAPGKPVTAQIKHADGKVEEIKLNHSM- 872 (1087)
Q Consensus 797 v~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~--l~~gD~i~I~~-l~~l~pg~~v~v~v~~~dG~~~~~~l~~~l- 872 (1087)
++||||+||+||||+||+|||||||+|.++.+|+. +.++|+|+|.. ...+.|+++++++ ..+|+. |++.+++
T Consensus 799 vraVIA~SF~rIh~~Nli~~GvlPL~f~~~~~~~~l~~~~~~~i~i~~~~~~l~p~~~v~v~--~~~G~~--~~~~~r~d 874 (898)
T PTZ00092 799 VKAVIAESFERIHRSNLVGMGILPLQFLNGENADSLGLTGKEQFSIDLNSGELKPGQDVTVK--TDTGKT--FDTILRID 874 (898)
T ss_pred CcEEEEecHHHHHHhhhhhcCcceeecCCcccHHHhcCCCCeEEEEeccccccCCCCeEEEE--eCCCcE--EEEEEeCC
Confidence 99999999999999999999999999999999997 67888999965 3458899888873 467865 4555555
Q ss_pred CHHHHHHHHhCCCCCch
Q psy3833 873 NEQQITWFQAELPTRIP 889 (1087)
Q Consensus 873 t~~E~e~~~aGGiLn~s 889 (1087)
|+.|++||+|||+|||.
T Consensus 875 t~~e~~y~~~GGiL~yv 891 (898)
T PTZ00092 875 TEVEVEYFKHGGILQYV 891 (898)
T ss_pred CHHHHHHHHcCCHHHHH
Confidence 99999999999999975
No 8
>PLN00070 aconitate hydratase
Probab=100.00 E-value=2.6e-163 Score=1461.12 Aligned_cols=685 Identities=30% Similarity=0.465 Sum_probs=589.2
Q ss_pred CCCceeccccccccccchhhHHHHHHHH-------cCC-C---cccCCceeeecccccccCCCc-----hhHHHHhhhhH
Q psy3833 127 TGPHSRLRPDRVAMQDATAQMAMLQFIS-------SGL-P---RVAVPSTIHCDHLIEAQVGGV-----EDLKRAKSQNE 190 (1087)
Q Consensus 127 pGe~V~l~~d~v~~qD~Tg~~a~~~~~~-------~g~-~---~v~~p~~~~~DH~v~a~~~~~-----~d~~~~~~~n~ 190 (1087)
.+..|.++|+||+|||+||+||+.+|++ +|. + ...+|..+|+||+|++++.+. .++..++++|.
T Consensus 114 ~~~ei~f~P~RV~~QD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vPvdlviDHsvqvd~~g~~~a~~~n~~~e~~rN~ 193 (936)
T PLN00070 114 KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNK 193 (936)
T ss_pred CCceeccCCceEEeecCCCCcceeHHHHHHHHHHHcCCCccccCCCCCcceEecCceeecccCCcCHHHHHHHHHHHHhH
Confidence 3457999999999999999999999854 233 3 346789999999999999883 45778899999
Q ss_pred HHHHHHHHHHHhc-CceecCCCCcceeeecccc----------cccCCCeEecCCCCccCccccceeeccccHHHHHHHH
Q psy3833 191 EVYAFLRSAGAKY-GVGFWHPGSGIIHQIILEN----------YAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVM 259 (1087)
Q Consensus 191 e~~~fl~~~~~~~-Gi~~~~pG~GIiHqv~lE~----------~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~m 259 (1087)
|+|+|++|..++| |++|++||+|||||+++|+ +++||+ ++||||||||+||||+||||||++|++++|
T Consensus 194 Ery~flkw~~~af~~~~vvpPG~GI~HQV~lE~la~~v~~~~G~~~Pdt-lVGtDSHT~~~GglG~lg~GVGg~EaeaaM 272 (936)
T PLN00070 194 ERFAFLKWGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDS-VVGTDSHTTMIDGLGVAGWGVGGIEAEAAM 272 (936)
T ss_pred HHhChhhhhhhhhcCccccCCCCceEeeechhhhcccccccCCcccCCe-EEeCCcccCCCCcccccEecccHHHHHHHH
Confidence 9999999999988 9999999999999999994 477887 899999999999999999999999999999
Q ss_pred hcCceEeecCcEEEEEEECcCCCCcchhHHHHHHHHHhcccCcccEEEEEeCCcccccCccccccccccccccccccccc
Q psy3833 260 ADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVF 339 (1087)
Q Consensus 260 a~g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~ 339 (1087)
+||++||++||+|+|+|+|+|++|||+|||||+|+++|+++|++|++|||+|||+++||+++|+|||||
T Consensus 273 lgqp~~~~vPevvgV~LtG~L~~GVtAKDliL~i~~~Lr~~GvvGk~VEF~G~Gv~~LSv~dRaTIaNM----------- 341 (936)
T PLN00070 273 LGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANM----------- 341 (936)
T ss_pred hCCeEEeeCCCEEEEEEEeecCCCCCHhHHHHHHHHHhCcCccceEEEEEeCCccccCCHhHHhhHhhc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhcccCCCccccccCCCccccccccccccccccccccccccccccccCCCCcccccccccCceeecccCcHHHHH
Q psy3833 340 PYNKRINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYD 419 (1087)
Q Consensus 340 ~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~ 419 (1087)
++|+|||+|+||+|++|++
T Consensus 342 -------------------------------------------------------------a~E~GAt~g~FP~De~T~~ 360 (936)
T PLN00070 342 -------------------------------------------------------------SPEYGATMGFFPVDHVTLQ 360 (936)
T ss_pred -------------------------------------------------------------chhhCceeeEecCChHHHH
Confidence 8999999999999999999
Q ss_pred HHHhcCChH-HHHHHHHhhcc-------CCCCCCCcccEEEEEeCCCCccccccCCCCCccccccccchhhhh-------
Q psy3833 420 FLKATLRED-IAKEAMKYQSL-------LTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKK------- 484 (1087)
Q Consensus 420 yL~~~~r~~-~~~~~~~~~~~-------l~aD~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~------- 484 (1087)
||+.|+|.+ .++.++.|++. ..+|++|+|++++|||||+|||+||||++|||++||+++.+.+.+
T Consensus 361 YL~~tgR~~~~~~~v~~y~k~~~l~~~~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~ 440 (936)
T PLN00070 361 YLKLTGRSDETVAMIEAYLRANKMFVDYNEPQQERVYSSYLELDLEDVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVG 440 (936)
T ss_pred HHHhCCCCHHHHHHHHHHHHhccccccccCCCCCCceeEEEEEEcccceEecCCCcChhcCcCHHHhhhhHHHhhccccc
Confidence 999999976 46677777642 267899999999999999999999999999999999999764211
Q ss_pred -------------------CCCc----c-ceeEEEEeccCCCChHHHHHHHHHH-HHhHhCCCCCC--CCEEEecCcHHH
Q psy3833 485 -------------------NGWP----M-DIKVSLIGSCTNASYEDMSRCASIA-KEAMAHGLKSS--TPFNVTPGSEQI 537 (1087)
Q Consensus 485 -------------------~g~~----~-~Id~vfIGSCTn~~~~dl~aAA~il-k~a~~~~~~~~--v~~~v~PgS~~v 537 (1087)
.|++ . .|++||||||||+|++|++.||.+| |+|+++|++++ ||++|+|||++|
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk~~vaPGS~~V 520 (936)
T PLN00070 441 FKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSGVV 520 (936)
T ss_pred ccccccchhhhhhhhhhhccCCCCCcccCCEeEEEEECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHH
Confidence 2222 1 3788999999999999977766666 78887776555 899999999999
Q ss_pred HHHHHHcChHHHHHhcCcEEecCCccccccCCCccc------ccCCcc-eeEEeecCCCCCCCCCCCCCcceeecCHHHH
Q psy3833 538 RATIERDGIAQTLREFGGTVLANACGPCIGQWNRKD------VKMGEK-NTIVNSYNRNFTGRNDANPATHAFVTSPELV 610 (1087)
Q Consensus 538 ~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~------v~~g~~-~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lv 610 (1087)
+++|+++|++++|.++||+|.+|||++|+||+++.. +.+++. .++|+|+||||+||||+. ...+|||||++|
T Consensus 521 ~~~l~~~Gl~~~L~~aGf~v~~~GCg~CIG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~gp~-~~~~yLaSP~lV 599 (936)
T PLN00070 521 TKYLLKSGLQKYLNQQGFHIVGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPL-TRANYLASPPLV 599 (936)
T ss_pred HHHHHHCCcHHHHHHcCCEEcCCccccccCCCCCCCchhhhccccCCeeEEEEeccCCCCCCCCCCC-CCceEEcCHHHH
Confidence 999999999999999999999999999999997521 233342 246899999999999842 345899999999
Q ss_pred HHHHHhCccccCCCCCCC-CCCCCCCeeecC--CCCCCCC---------CC---CcC---CCCccccCCCCCCCCceEec
Q psy3833 611 TALAIKGTLAFDPRSDTL-TGSDGKPFKLRD--PFGDELP---------TK---GFD---PGVDTYQPPPKDGSSLSVDV 672 (1087)
Q Consensus 611 AAsAiaG~I~fdp~~d~L-~~~dG~~v~l~d--P~~~eip---------~~---~~~---~~~~~~~~~~~~~~~v~~~~ 672 (1087)
||+||+|+|.||+.+|+| .+++|++|||+| |+.+|+. +. .|. .++..|+.++.+ .+..|.|
T Consensus 600 aA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~p-~~~~~~w 678 (936)
T PLN00070 600 VAYALAGTVDIDFEKEPIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVP-SGTLYSW 678 (936)
T ss_pred HHHHHcCCcccCCCCCCCccCCCCCEecccCCCCChHHHHHHHHccCCHHHhhhhhhhccCCccccccCCCC-CCCcccC
Confidence 999999999999999999 789999999999 9888872 21 222 456778876655 4579999
Q ss_pred CCCCccccCCCCCC-----CCcccccccceeeeeecCccccccccCCCC---------cccccCcccccccc--------
Q psy3833 673 DPKSQRLQLLEPFD-----VWDKKDIKDMVVLIKVKGKCTTDHISAAGP---------WLKFRGHLDNISNN-------- 730 (1087)
Q Consensus 673 ~p~S~~l~~l~pf~-----~~~~~~i~~arvLl~~gd~iTTDhIsPAG~---------~L~~rg~~~~i~~~-------- 730 (1087)
+|+|+||+++|+|+ +|+..++.++|||+++||+||||||||||. ||++||..+..+|.
T Consensus 679 d~~Styi~~pp~f~~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~ 758 (936)
T PLN00070 679 DPKSTYIHEPPYFKNMTMSPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGND 758 (936)
T ss_pred CCCcceeecCCCCCCcCCCCCCCcCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHhcCCChhhccccccccCcc
Confidence 99999999999997 356678999999999999999999999997 99886443333221
Q ss_pred --cccccc------ccc-c-CcccceEeecCCCcCChHHHHHHHHHcCCCcEEecCCCcCCCccchhhccccccccceEE
Q psy3833 731 --LFLTAT------NAE-N-GEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENYGEGSSREHAALEPRHLGGRAI 800 (1087)
Q Consensus 731 --~l~~~~------n~~-~-g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG~nyG~GSSRE~Aa~~~r~lGv~aV 800 (1087)
|+.|.+ |.. . .+++.++++|+|+.+++||+|++|+++|+|+|||||+|||||||||||||++++|||+||
T Consensus 759 evm~rgtFaNir~~N~~~~g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iIvaG~nyG~GSSRe~AA~~~~~lGvkaV 838 (936)
T PLN00070 759 EIMARGTFANIRIVNKLLKGEVGPKTVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGSSRDWAAKGPMLLGVKAV 838 (936)
T ss_pred hhhhceeccchhhhhhhcCCCcCCeeEecCCCceeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEE
Confidence 111111 111 1 245689999999999999999999999999999999999999999999999999999999
Q ss_pred EEechhHHHhhhhccCccceEEecCCCCcccCC--CCCEEEEc---cccCcCCCCcEEEEEEecCCeEEEEEEEecCCHH
Q psy3833 801 IVKSFARIHETNLKKQGLLPLTFANPSDYDKIQ--PNDRISLV---GLKDLAPGKPVTAQIKHADGKVEEIKLNHSMNEQ 875 (1087)
Q Consensus 801 IA~SFarI~~~Nlin~GllpL~f~~~~~~~~l~--~gD~i~I~---~l~~l~pg~~v~v~v~~~dG~~~~~~l~~~lt~~ 875 (1087)
||+||+||||+||+|||||||+|.++.+|+.+. ++|.++|. ++.++.|++.+++++ .+|+.+++.+++. |+.
T Consensus 839 IA~SF~rIhrsNli~~GiLPL~f~~~~~~~~l~~~g~~~~~i~l~~~~~~l~p~~~~~v~~--~~g~~~~~~~r~d-t~~ 915 (936)
T PLN00070 839 IAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSNISEIKPGQDVTVTT--DNGKSFTCTLRFD-TEV 915 (936)
T ss_pred EEccHHHHHHhhhhhcCcceEEeCCcccHHHHhcCCCceEEEeccccccccCCCCEEEEEe--CCCeEEEEEEeCC-CHH
Confidence 999999999999999999999999999999764 46767774 234478998777654 5776555555543 999
Q ss_pred HHHHHHhCCCCCch
Q psy3833 876 QITWFQAELPTRIP 889 (1087)
Q Consensus 876 E~e~~~aGGiLn~s 889 (1087)
|++||++||+|||.
T Consensus 916 E~~~~~~GGiL~~v 929 (936)
T PLN00070 916 ELAYFDHGGILPYV 929 (936)
T ss_pred HHHHHHcCCHHHHH
Confidence 99999999999975
No 9
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=3.7e-158 Score=1391.92 Aligned_cols=687 Identities=35% Similarity=0.553 Sum_probs=589.9
Q ss_pred cCCCceeccccccccccchhhHHHHHHHH-------cCC-C---cccCCceeeecccccccCCC-----chhHHHHhhhh
Q psy3833 126 QTGPHSRLRPDRVAMQDATAQMAMLQFIS-------SGL-P---RVAVPSTIHCDHLIEAQVGG-----VEDLKRAKSQN 189 (1087)
Q Consensus 126 rpGe~V~l~~d~v~~qD~Tg~~a~~~~~~-------~g~-~---~v~~p~~~~~DH~v~a~~~~-----~~d~~~~~~~n 189 (1087)
.+..++.++|+||+|||+||+|++.++.. +|. + ...+|.++|+||++.+++++ ..|++.++++|
T Consensus 66 ~~~~ei~~~p~RVvmQD~tgvpa~vdla~mr~a~~~~g~dp~~inP~~pvdLviDHsv~vd~~g~~~a~~~n~~~e~~rN 145 (861)
T COG1048 66 KPEKEIAFRPARVVMQDFTGVPAVVDLAAMRDAMVELGGDPAKINPVVPVDLVIDHSVQVDVGGDPDAFEKNVELEFERN 145 (861)
T ss_pred CcccccccccceeeeecccCCCeeEEhhhHHHHHHHhcCChhhcCCCCcceeeecceeeeecCCChhhhhhhhhhHhhhh
Confidence 44567999999999999999997655543 343 2 34678999999999999988 56788999999
Q ss_pred HHHHHHHHHHHH-hcCceecCCCCcceeeeccccccc-----CC----CeEecCCCCccCccccceeeccccHHHHHHHH
Q psy3833 190 EEVYAFLRSAGA-KYGVGFWHPGSGIIHQIILENYAF-----PG----LLMIGTDSHTPNGGGLGGLCIGVGGADAVDVM 259 (1087)
Q Consensus 190 ~e~~~fl~~~~~-~~Gi~~~~pG~GIiHqv~lE~~~~-----Pg----~~~vGtDSHT~~~GglGala~GvG~~d~a~~m 259 (1087)
.|+|+||+|+++ .+|++|+|||.||||||+||+++. || .++|||||||+|+||||+|||||||+||+++|
T Consensus 146 ~ery~FL~w~~kaf~n~~vvPPGtGIiHQVnLE~la~vv~~~~g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaM 225 (861)
T COG1048 146 GERYKFLKWAAKAFYNFRVVPPGTGIIHQVNLEYLAKVVWAKPGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAM 225 (861)
T ss_pred hHHHHHHHHHHHhcCCcEEECCCCceeeeehHhhhccceeccCcccccCceeeccCCCCCcCcceEEEeccchHHHHHHH
Confidence 999999999999 679999999999999999999766 88 78999999999999999999999999999999
Q ss_pred hcCceEeecCcEEEEEEECcCCCCcchhHHHHHHHHHhcccCcccEEEEEeCCcccccCccccccccccccccccccccc
Q psy3833 260 ADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVF 339 (1087)
Q Consensus 260 a~g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~ 339 (1087)
+|+||||++|++|+|+|+|+|++|||+|||||+|++.|+++|++|++|||+||||++||+++|+|||||
T Consensus 226 lG~p~~~~iP~VvGVkLtGkl~~gvTatDlvL~vt~~Lr~~gvVgkfVEFfG~Gv~~Ls~~dRaTI~NM----------- 294 (861)
T COG1048 226 LGQPWYMLIPEVVGVKLTGKLPEGVTATDLVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRATIANM----------- 294 (861)
T ss_pred cCCceEeeCCcEEEEEEeccCCCCCCHHHHHHHHHHHHHhcCccceEEEEECCchhhCCcccceeeecc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhcccCCCccccccCCCccccccccccccccccccccccccccccccCCCCcccccccccCceeecccCcHHHHH
Q psy3833 340 PYNKRINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYD 419 (1087)
Q Consensus 340 ~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~ 419 (1087)
++|+|||+|+||.|++|++
T Consensus 295 -------------------------------------------------------------~pEyGAT~g~FPiDe~tl~ 313 (861)
T COG1048 295 -------------------------------------------------------------GPEYGATSGFFPIDEETLD 313 (861)
T ss_pred -------------------------------------------------------------ccccccccccCCCCHHHHH
Confidence 8999999999999999999
Q ss_pred HHHhcCChH-HHHHHHHhhc---c--CCCCCCCcccEEEEEeCCCCccccccCCCCCccccccccchhhhhCC-------
Q psy3833 420 FLKATLRED-IAKEAMKYQS---L--LTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNG------- 486 (1087)
Q Consensus 420 yL~~~~r~~-~~~~~~~~~~---~--l~aD~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~~g------- 486 (1087)
||+.|+|.+ ..+.+++|.+ + ..+|++|+|+++||||||+|+|+||+|++|||++||+++++.+.+.-
T Consensus 314 YL~~tgR~~~~i~lve~y~~~~~l~~~~~~~~a~Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~~~ 393 (861)
T COG1048 314 YLRLTGRSEEQVALVEAYAKAQGLWYDPADKDAEYDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEIKR 393 (861)
T ss_pred HHHHhCCchHHHHHHHHHHHHhcccCCccccCCccceeEEEEhhhCcccccCCCChhhceEHHHHHHHHHHhhhhhhccc
Confidence 999999976 3456677764 2 35778999999999999999999999999999999999998765431
Q ss_pred ---------CccceeEEEEeccCCCChHH-HHHHHHHHHHhHhC--CCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcC
Q psy3833 487 ---------WPMDIKVSLIGSCTNASYED-MSRCASIAKEAMAH--GLKSSTPFNVTPGSEQIRATIERDGIAQTLREFG 554 (1087)
Q Consensus 487 ---------~~~~Id~vfIGSCTn~~~~d-l~aAA~ilk~a~~~--~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aG 554 (1087)
++.+|.++.||||||+|++| |++|+.|.|+|+++ ++++.|+++|+|||++|.++|++.|++++|+++|
T Consensus 394 ~~~~~~~~~~~g~V~iaaItSCTNtSnp~v~~aAgllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~~Gl~~~L~~lG 473 (861)
T COG1048 394 VYSLLGKELGDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKAGLLPYLEKLG 473 (861)
T ss_pred ccccccccCCCCcEEEEEEeeccCCCCHHHHHHHHHHHhhHHhcccCCCCCeeEeeCCCcHHHHHHHHHcCCHHHHHhcC
Confidence 45689999999999999999 66666666767644 5566689999999999999999999999999999
Q ss_pred cEEecCCccccccCCCc--c----cccCCcc-eeEEeecCCCCCCCCCCCCCcceeecCHHHHHHHHHhCccccCCCCCC
Q psy3833 555 GTVLANACGPCIGQWNR--K----DVKMGEK-NTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAIKGTLAFDPRSDT 627 (1087)
Q Consensus 555 a~i~~pGCg~CiG~~~~--~----~v~~g~~-~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvAAsAiaG~I~fdp~~d~ 627 (1087)
|.++++||++||||+++ + .+.+++. .+.|.|+||||+||+|+ ..+.+|||||+||+|+||+|++.+|+.+++
T Consensus 474 f~iv~~gCttCIGnsg~L~~~i~~~I~~~~l~~~avlSgNRNFeGRi~p-~~k~nyLaSP~LVvAyAlAG~i~~d~~~~~ 552 (861)
T COG1048 474 FNIVGYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGP-LVKANYLASPPLVVAYALAGTINFDLTTDP 552 (861)
T ss_pred CEEeccccccccCCCCCCChhhhhccccCceEEEeeeccCCCCCcCCCC-hhhcccccCcHHHHHHHHhcccccCcccCc
Confidence 99999999999999985 1 1222321 23456999999999974 346789999999999999999999999999
Q ss_pred C-CCCCCCCeeecC--CCCCCCCCC-CcCCCCccccC----------CCCCCCCceEecCCCCccccCCCCCCCC--ccc
Q psy3833 628 L-TGSDGKPFKLRD--PFGDELPTK-GFDPGVDTYQP----------PPKDGSSLSVDVDPKSQRLQLLEPFDVW--DKK 691 (1087)
Q Consensus 628 L-~~~dG~~v~l~d--P~~~eip~~-~~~~~~~~~~~----------~~~~~~~v~~~~~p~S~~l~~l~pf~~~--~~~ 691 (1087)
+ .+.+|+++++.| |+.+|+.+. .+..+.+.|.. ... ..+..|.|+++|+|++.+|.|+.. ...
T Consensus 553 lg~~~~g~~v~l~diwP~~~ei~~~v~~~~~~e~f~~~y~~v~~w~~~~~-~~~~~y~w~~~styi~~pP~f~~~~~~~~ 631 (861)
T COG1048 553 LGTDNDGKPVYLKDIWPSTEEIAEAVGKAVKPEMFRKEYADVFKWNAIEV-PEGPLYDWPNISTYIRLPPFFDGMGAEPK 631 (861)
T ss_pred cccCCCCCceeeeccCCCcHHHHHHHhhccChhhhccccccccccccccC-CCcCcccCCCcCccccCCCcccccccccc
Confidence 9 578999999999 877777531 12223333333 222 245679999999999986666432 123
Q ss_pred ccccceeeeeecCccccccccCCCC--------cccccCcccccccccccccccc------------------ccCcccc
Q psy3833 692 DIKDMVVLIKVKGKCTTDHISAAGP--------WLKFRGHLDNISNNLFLTATNA------------------ENGEMNK 745 (1087)
Q Consensus 692 ~i~~arvLl~~gd~iTTDhIsPAG~--------~L~~rg~~~~i~~~~l~~~~n~------------------~~g~~~~ 745 (1087)
.+.++|+|++++|+||||||||||. ++.++.+.+++..|.+.++.+. -.++++.
T Consensus 632 ~~~~~r~L~~~gD~iTTDHISPAg~i~~~spag~yl~~~gv~~~dfNsygsrrgnhevm~r~tfaNir~~n~~~~~~gg~ 711 (861)
T COG1048 632 PIKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTFANIRIRNEMVPGEGGY 711 (861)
T ss_pred ccccceeeeeecCccccCcccCCCCCCCCCccchhhhhcCCCcccccchhcccccHHHhhhhhhcccccccccccccCcc
Confidence 4788999999999999999999984 3344555555554444332211 0236778
Q ss_pred eEeecCCCcCChHHHHHHHHHcCCCcEEecCCCcCCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecC
Q psy3833 746 VKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFAN 825 (1087)
Q Consensus 746 ~~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG~nyG~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~ 825 (1087)
+.++|+|+ +||++++|+++|+|+|||||+|||+||||||||+++++|||+||||+||+||||+|||+||||||+|++
T Consensus 712 t~~~p~g~---iydaa~~yk~~g~p~vvvaG~~YG~GSSRdwAAkg~~lLGv~AVIAeSFeRIHrSNLi~mGvLPLqf~~ 788 (861)
T COG1048 712 TIHQPSGE---IYDAAMKYKEEGIPLVVVAGKNYGTGSSRDWAAKGPRLLGVKAVIAESFERIHRSNLIGMGVLPLQFPN 788 (861)
T ss_pred eeecCCch---hHHHHHHHHHcCCCeEEEeeccCCCCchHHHHhhCchhcCeeeeeehhHHHHHHhhcccceeeeeeccC
Confidence 89999998 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccC--CCCCEEEEccccCcCCCCcEEEEEEecCCeEEEEEEEecC-CHHHHHHHHhCCCCCch
Q psy3833 826 PSDYDKI--QPNDRISLVGLKDLAPGKPVTAQIKHADGKVEEIKLNHSM-NEQQITWFQAELPTRIP 889 (1087)
Q Consensus 826 ~~~~~~l--~~gD~i~I~~l~~l~pg~~v~v~v~~~dG~~~~~~l~~~l-t~~E~e~~~aGGiLn~s 889 (1087)
+.++++| .+.+.|+|.++.++.|+.++++++++.||...++.+.+++ |+.|++||+|||+|||.
T Consensus 789 ~~~~~~l~l~g~e~~~i~~~~~~~p~~~~~v~~~~~dg~~~~~~~~~r~dt~~E~~y~k~GGiL~~v 855 (861)
T COG1048 789 GETYDKLGLDGEETIDIGGLENLKPGATVTVTVTRGDGPVEEFPVLCRIDTAEEIEYYKAGGILNYV 855 (861)
T ss_pred CCChhhcCCCCceeEeecccccCCCCceEEEEEEcCCCceEEEeeeeecCCHHHHHHHHcCchHHHH
Confidence 9999975 6667788877777889999999999999999999988766 99999999999999964
No 10
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=2.1e-157 Score=1397.02 Aligned_cols=632 Identities=44% Similarity=0.708 Sum_probs=574.5
Q ss_pred CCchhhhccc------cccCCCceeccccccccccchhhHHHHHHHHcCCCcccCCcee-eecccccccCCCchhHHHHh
Q psy3833 114 GRTLADSSYE------AEQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTI-HCDHLIEAQVGGVEDLKRAK 186 (1087)
Q Consensus 114 GkTLAdKg~E------~VrpGe~V~l~~d~v~~qD~Tg~~a~~~~~~~g~~~v~~p~~~-~~DH~v~a~~~~~~d~~~~~ 186 (1087)
|+||++|.+. .+++|+.|.++||+|++||.|++|++.+|+++|.+++++|..+ ++||++++..
T Consensus 2 ~~Tl~eKIl~~h~~~~~v~~G~~v~~~vd~v~~~D~t~~~a~~~~~~~G~~~~~~p~~~~~~DH~~~~~~---------- 71 (646)
T PRK07229 2 GLTLTEKILYAHLVEGELEPGEEIAIRIDQTLTQDATGTMAYLQFEAMGLDRVKTELSVQYVDHNLLQAD---------- 71 (646)
T ss_pred CcCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEeccchHHHHHHHHHcCCCcCCCCCeEEECCCCCCCCC----------
Confidence 6788888552 2679999999999999999999999999999999999999888 9999987643
Q ss_pred hhhHHHHHHHHHHHHhcCceecCCCCcceeeecccccccCCCeEecCCCCccCccccceeeccccHHHHHHHHhcCceEe
Q psy3833 187 SQNEEVYAFLRSAGAKYGVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWEL 266 (1087)
Q Consensus 187 ~~n~e~~~fl~~~~~~~Gi~~~~pG~GIiHqv~lE~~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g~~~l 266 (1087)
.+|.++|+|++|++++|||.|++||.|||||+++|+|++||++++||||||||+||||+||||||++|++++|+||++||
T Consensus 72 ~~~~~~~~~l~~~a~~~gi~~~~~g~GI~Hqv~~E~~a~PG~~ivGtDSHT~~~GalG~la~GvG~~d~~~~m~~g~~~~ 151 (646)
T PRK07229 72 FENADDHRFLQSVAAKYGIYFSKPGNGICHQVHLERFAFPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGGPYYL 151 (646)
T ss_pred hhhHHHHHHHHHHHHHhCCeEECCCCCCcceehhhhccCCCCEEEeCCCCcCcCCcccccEEccCHHHHHHHHhcCcEEc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcEEEEEEECcCCCCcchhHHHHHHHHHhcccCcccEEEEEeCCcccccCccccccccccccccccccccccccchhh
Q psy3833 267 KCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRIN 346 (1087)
Q Consensus 267 ~vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~~~v~ 346 (1087)
++||+|+|+|+|+|++|||+|||||+|+++|+++|++|++|||+|||+++||+++|||||||
T Consensus 152 ~vPe~v~V~l~G~l~~gV~akDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~Ti~NM------------------ 213 (646)
T PRK07229 152 KMPKVVGVKLTGKLPPWVSAKDVILELLRRLTVKGGVGKIIEYFGPGVATLSVPERATITNM------------------ 213 (646)
T ss_pred cCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCccCccceEEEEECcccccccHHHHhhhhcc------------------
Confidence 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccccCCCccccccccccccccccccccccccccccccCCCCcccccccccCceeecccCcHHHHHHHHhcCC
Q psy3833 347 EYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLR 426 (1087)
Q Consensus 347 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL~~~~r 426 (1087)
++|+||++|+||+|++|++||+.++|
T Consensus 214 ------------------------------------------------------~~E~GA~~~if~~D~~t~~yL~~~gr 239 (646)
T PRK07229 214 ------------------------------------------------------GAELGATTSIFPSDERTREFLKAQGR 239 (646)
T ss_pred ------------------------------------------------------ccccCceEEEecCcHHHHHHHHhcCC
Confidence 89999999999999999999999988
Q ss_pred hHHHHHHHHhhccCCCCCCCcccEEEEEeCCCCccccccCCCCCccccccccchhhhhCCCccceeEEEEeccCCCChHH
Q psy3833 427 EDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNASYED 506 (1087)
Q Consensus 427 ~~~~~~~~~~~~~l~aD~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~~g~~~~Id~vfIGSCTn~~~~d 506 (1087)
.+. +..|.+|++|+|+++++||||+|||+||+|++|||++||+|+.+. +||+||||||||+|++|
T Consensus 240 ~~~-------~~~l~~D~~a~Y~~~i~iDLs~leP~va~P~~Pd~~~pv~e~~~~--------~I~~a~IGSCTN~~~~D 304 (646)
T PRK07229 240 EDD-------WVELLADPDAEYDEVIEIDLSELEPLIAGPHSPDNVVPVSEVAGI--------KVDQVLIGSCTNSSYED 304 (646)
T ss_pred ccc-------ceeccCCCCCCeeEEEEEEccceeeeeecCCCccceeEhHHhCCC--------eEEEEEEecCCCCChHH
Confidence 642 246889999999999999999999999999999999999999864 69999999999999999
Q ss_pred HHHHHHHHHHhHhCCCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCccccccCCCcccccCCcceeEEeec
Q psy3833 507 MSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSY 586 (1087)
Q Consensus 507 l~aAA~ilk~a~~~~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~v~~g~~~~~vsT~ 586 (1087)
|++||.||++ +++++.+|++|+|||++|+++|+++|++++|.++||+|.+||||+|+|++. ...+ ++++|||+
T Consensus 305 l~~aA~iL~G---~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~g~--~~~~--~~~~vst~ 377 (646)
T PRK07229 305 LMRAASILKG---KKVHPKVSLVINPGSRQVLEMLARDGALADLIAAGARILENACGPCIGMGQ--APAT--GNVSLRTF 377 (646)
T ss_pred HHHHHHHhcC---CCCCCCeeEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCC--CCCC--CcEEEEcc
Confidence 9999999996 799999999999999999999999999999999999999999999999853 2333 44899999
Q ss_pred CCCCCCCCCCCCCcceeecCHHHHHHHHHhCccccCCCCCCCCCCCCCCeeecCCCCCCCCCCCcCCCCccccCCCCCCC
Q psy3833 587 NRNFTGRNDANPATHAFVTSPELVTALAIKGTLAFDPRSDTLTGSDGKPFKLRDPFGDELPTKGFDPGVDTYQPPPKDGS 666 (1087)
Q Consensus 587 NRNF~gR~G~~p~~~~yLaSp~lvAAsAiaG~I~fdp~~d~L~~~dG~~v~l~dP~~~eip~~~~~~~~~~~~~~~~~~~ 666 (1087)
||||+|||| ++.+++|||||++|||+|++|+|+ ||+.+++.. |+.++|.+|. .|...+..|..++....
T Consensus 378 NRNF~GR~G-~~~~~~yLaSP~~vaAsA~~G~i~-dp~~~~~~~--g~~~~~~~p~-------~~~~~~~~~~~~~~~~~ 446 (646)
T PRK07229 378 NRNFPGRSG-TKDAQVYLASPETAAASALTGVIT-DPRTLALEN--GEYPKLEEPE-------GFAVDDAGIIAPAEDGS 446 (646)
T ss_pred CCCCCccCC-CCCCeEEECCHHHHHHHHhcCccC-Chhhccccc--CCcceecCCc-------cccCChhhhcCCCcccc
Confidence 999999998 467899999999999999999999 999988855 8999998775 23334556777665556
Q ss_pred CceEecCCCCccccCCCCCCCCcccccccceeeeeecCccccccccCCCC-cccccCccccccccccccccccccCcccc
Q psy3833 667 SLSVDVDPKSQRLQLLEPFDVWDKKDIKDMVVLIKVKGKCTTDHISAAGP-WLKFRGHLDNISNNLFLTATNAENGEMNK 745 (1087)
Q Consensus 667 ~v~~~~~p~S~~l~~l~pf~~~~~~~i~~arvLl~~gd~iTTDhIsPAG~-~L~~rg~~~~i~~~~l~~~~n~~~g~~~~ 745 (1087)
++++..+|++.+++.++||+ ++..+++|++++|+||||||+|+|. ||++|++.+++++++|.+.
T Consensus 447 ~~~~~~~p~~~~~~~~~~~~-----~~~~~~vl~~~gd~i~TD~I~Pa~~~~l~~r~~~~~l~~~~f~~~---------- 511 (646)
T PRK07229 447 DVEVVRGPNIKPLPLLEPLP-----DLLEGKVLLKVGDNITTDHIMPAGAKWLPYRSNIPNISEFVFEGV---------- 511 (646)
T ss_pred cccccCCCCCCCCccCCCCC-----cCceEEEEEEcCCCCChhccCcCCcchhccCCCHHHHHHHHhccC----------
Confidence 67787888887776666654 7899999999999999999999997 9999999999999988743
Q ss_pred eEeecCCCcCChHHHHHHHHHcCCCcEEecCCCcCCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecC
Q psy3833 746 VKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFAN 825 (1087)
Q Consensus 746 ~~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG~nyG~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~ 825 (1087)
.|+|..+++..+ ++|||||+|||||||||||||+++++||+||||+||+|||++||+|+|||||+|.+
T Consensus 512 -----------~~~f~~~~~~~~-~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~~ 579 (646)
T PRK07229 512 -----------DNTFPERAKEQG-GGIVVGGENYGQGSSREHAALAPRYLGVKAVLAKSFARIHKANLINFGILPLTFAD 579 (646)
T ss_pred -----------ChhhhHHHHhcC-CcEEEecCccCCCCchHHHHHHHHHHCCCEEEEeCHHHHHHhhHHhcCCceEEecC
Confidence 356777777655 68999999999999999999999999999999999999999999999999999988
Q ss_pred CCCcccCCCCCEEEEccccCcCCCCcEEEEEEecCCeEEEEEEEecCCHHHHHHHHhCCCCCchh
Q psy3833 826 PSDYDKIQPNDRISLVGLKDLAPGKPVTAQIKHADGKVEEIKLNHSMNEQQITWFQAELPTRIPA 890 (1087)
Q Consensus 826 ~~~~~~l~~gD~i~I~~l~~l~pg~~v~v~v~~~dG~~~~~~l~~~lt~~E~e~~~aGGiLn~sr 890 (1087)
+++|+.++.||+|+|.+++++.++++|++++.+. | +++++++++|+.|++|+++||+|||.+
T Consensus 580 ~~~~~~l~~gd~i~i~dl~~~~~~~~v~v~~~~~-~--~~~~~~~~l~~~e~~i~~aGGll~~~~ 641 (646)
T PRK07229 580 PADYDKIEEGDVLEIEDLREFLPGGPLTVVNVTK-D--EEIEVRHTLSERQIEILLAGGALNLIK 641 (646)
T ss_pred hHhHhhcCCCCEEEEccchhcCCCCeEEEEEecC-C--EEEEEEccCCHHHHHHHHcCCHHHHHH
Confidence 8899999999999998787777888777776654 3 678888889999999999999999865
No 11
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=4.2e-154 Score=1366.70 Aligned_cols=627 Identities=37% Similarity=0.590 Sum_probs=547.5
Q ss_pred ccCCCceeccccccccccchhhHHHHHHHHcCCCcccCCc-eeeecccccccCCCchhHHHHhhhhHHHHHHHHHHHHhc
Q psy3833 125 EQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPS-TIHCDHLIEAQVGGVEDLKRAKSQNEEVYAFLRSAGAKY 203 (1087)
Q Consensus 125 VrpGe~V~l~~d~v~~qD~Tg~~a~~~~~~~g~~~v~~p~-~~~~DH~v~a~~~~~~d~~~~~~~n~e~~~fl~~~~~~~ 203 (1087)
+++|++|.++||+|++||.|||||+++|+++|.++++.+. .+++||++++. |. +|.++|+|++|++++|
T Consensus 16 ~~~G~~v~~~vD~v~~hD~Tg~~a~~~~~~~g~~~v~~~~~~~~~DH~~~~~-----d~-----~~a~~~~~l~~~a~~~ 85 (658)
T TIGR01342 16 LEPGEEIAIEIDQTLSQDATGTMCWLEFEALEMDEVKTELAAQYCDHNMLQF-----DF-----KNADDHKFLMSAAGKF 85 (658)
T ss_pred CCCCCEEEEEccEEEEeccchHHHHHHHHHcCCCccCCCCeEEECCCCCCCC-----Ch-----hhHHHHHHHHHHHHHh
Confidence 6799999999999999999999999999999998887432 35999999873 33 4678999999999999
Q ss_pred CceecCCCCcceeeecccccccCCCeEecCCCCccCccccceeeccccHHHHHHHHhcCceEeecCcEEEEEEECcCCCC
Q psy3833 204 GVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKGW 283 (1087)
Q Consensus 204 Gi~~~~pG~GIiHqv~lE~~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g~~~l~vPe~V~V~l~G~l~~g 283 (1087)
|+.|++||+|||||+++|++++||++++||||||||+||||+||||||++|++.+|+||++||++||+|+|+|+|+|++|
T Consensus 86 gi~~~~pg~GI~Hqv~~E~~a~PG~~ivGtDSHT~t~GalG~la~GvG~td~a~~matg~~~~~vPe~i~V~l~G~l~~g 165 (658)
T TIGR01342 86 GAWFSKPGNGICHNVHKENFAAPGKTLLGSDSHTPTAGGLGMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEW 165 (658)
T ss_pred CCeEECCCCCEEeeEchhhccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCcEEccCCcEEEEEEecccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHhcccCcccEEEEEeCCcccccCccccccccccccccccccccccccchhhcccCCCccccccCCCcc
Q psy3833 284 TSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGT 363 (1087)
Q Consensus 284 Vt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~~~v~~y~~~~~~~~~~~~~~~ 363 (1087)
||+|||||+|+++|+++|++|++|||+|||+++||+++|||||||
T Consensus 166 V~aKDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~Ti~NM----------------------------------- 210 (658)
T TIGR01342 166 ATAKDIILELLRRLSVKGGLGKIFEYFGEGVEELSVPERATITNM----------------------------------- 210 (658)
T ss_pred cCHHHHHHHHHHHhcccCcceEEEEEecCCcCccCHHHHhhhhcc-----------------------------------
Confidence 999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccccccccccccccCCCCcccccccccCceeecccCcHHHHHHHHhcCChHHHHHHHHhhccCCCC
Q psy3833 364 ICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAKEAMKYQSLLTPD 443 (1087)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL~~~~r~~~~~~~~~~~~~l~aD 443 (1087)
++|+||++|+||+|++|++||+.++|.+ .| ..|.+|
T Consensus 211 -------------------------------------~~E~GA~~~if~~D~~t~~yl~~~~r~~------~~-~~l~~D 246 (658)
T TIGR01342 211 -------------------------------------GAELGATSSIFPSDDITEAWLAAFDRED------DF-VDLLAD 246 (658)
T ss_pred -------------------------------------chhhCceEEEEcCcHHHHHHHHhcCCch------he-eeccCC
Confidence 8999999999999999999999998864 23 368999
Q ss_pred CCCcccEEEEEeCCCCccccccCCCCCccccccccchhhhhCCCccceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCC
Q psy3833 444 EGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLK 523 (1087)
Q Consensus 444 ~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~~g~~~~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~ 523 (1087)
++|+|+++|+||||+|||+||+|++|||++||+|+.+. +||+||||||||+|++||++||+||++ ++++
T Consensus 247 ~~a~Y~~~i~iDls~leP~va~P~~Pd~v~~v~e~~g~--------~id~v~IGSCTn~~~~Dl~~aA~il~G---~~v~ 315 (658)
T TIGR01342 247 ADAEYADEIEIDLSDLEPLIAEPHMPDNVVPVREIAGI--------EVDQVMIGSCTNGAFEDLLPAAKLLEG---REVH 315 (658)
T ss_pred CCCcEEEEEEEEccceeeeeeCCCCCCCeeEhHHhCCc--------eeeeEEEeCCCCCChHHHHHHHHHhCC---CccC
Confidence 99999999999999999999999999999999999863 799999999999999999999999997 7999
Q ss_pred CCCCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCccccccCCCcccccCCcceeEEeecCCCCCCCCCCCCCccee
Q psy3833 524 SSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAF 603 (1087)
Q Consensus 524 ~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~v~~g~~~~~vsT~NRNF~gR~G~~p~~~~y 603 (1087)
+++|++|+|||++|+++|+++|++++|.++||+|..||||+|+|++.. ..++ +++|||+||||+|||| ++.+++|
T Consensus 316 ~~v~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~~gCg~CiG~~~~--~~~~--~~~vst~NRNF~gR~G-~~~~~~y 390 (658)
T TIGR01342 316 KDTEFAVAPGSKQALELIAQEGALAEFLAAGANFLEAACGACIGIGFA--PASD--GVSLRSFNRNFEGRAG-IEDAKVY 390 (658)
T ss_pred CCccEEEeCCcHHHHHHHHHcCcHHHHHHcCCEEeCCCccccccCCCC--CCCC--cEEEEccCCCCCccCC-CCCCeEE
Confidence 999999999999999999999999999999999999999999999754 4344 4799999999999998 4678999
Q ss_pred ecCHHHHHHHHHhCccccCCCCCCCCCCCCCCeeecCCCCCCCCCCCcCCC-Cc-cccC-CCCCCCCceEecCCCCcccc
Q psy3833 604 VTSPELVTALAIKGTLAFDPRSDTLTGSDGKPFKLRDPFGDELPTKGFDPG-VD-TYQP-PPKDGSSLSVDVDPKSQRLQ 680 (1087)
Q Consensus 604 LaSp~lvAAsAiaG~I~fdp~~d~L~~~dG~~v~l~dP~~~eip~~~~~~~-~~-~~~~-~~~~~~~v~~~~~p~S~~l~ 680 (1087)
||||++|||+|++|+|+ ||+. |.+.+|. +..| ..+.|+. |..+ +. .|.. |+.+.+++++..+|++.+++
T Consensus 391 LaSP~~vaAsA~~G~i~-dp~~--l~~~~g~---~~~p-~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~p 462 (658)
T TIGR01342 391 LASPETATAAAIAGEII-DPRD--LADDEGD---LEAI-GFEMGEK-FPGGYDAADIDIIPKEEREDDDIIKGPNIKPLP 462 (658)
T ss_pred ECCHHHHHHHHHcCCcC-CHHH--hccccCc---ccCC-CCCCchh-hcccccccccccCCCCCCCCcceeeCCCCCCCC
Confidence 99999999999999996 9984 5444442 1122 2222321 2222 11 2333 22344566777788777665
Q ss_pred CCCCCCCCcccccccceeeeeecCccccccccCCCC-cccccCccccccccccccccccccCcccceEeecCCCcCChHH
Q psy3833 681 LLEPFDVWDKKDIKDMVVLIKVKGKCTTDHISAAGP-WLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNE 759 (1087)
Q Consensus 681 ~l~pf~~~~~~~i~~arvLl~~gd~iTTDhIsPAG~-~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd 759 (1087)
.++||+ .++.+ |++++++|+||||||+|+|. ||.+|+++++++.++|.. ++++| .+
T Consensus 463 ~~~~~~----~~i~g-rv~~~~gDnI~TD~I~Pa~~~~l~~r~~~~~l~~~~~~~---------------~~p~f---~~ 519 (658)
T TIGR01342 463 EFDPLG----ADIEG-ETALIMEDNITTDHIIPAGADILKFRSNIEAISEFTLHR---------------IDDEF---AE 519 (658)
T ss_pred CCCCCc----cccCc-eEEEEcCCCCChhcCCCCCccccccCCCHHHHhhheeeC---------------CCchH---HH
Confidence 555553 35655 99999999999999999996 788999998888887753 23332 35
Q ss_pred HHHHHHHcCCCcEEecCCCcCCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecCCCCcccCCCCCEEE
Q psy3833 760 VARAYKAAGVPWVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRIS 839 (1087)
Q Consensus 760 ~A~~yk~~g~~~IVVAG~nyG~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l~~gD~i~ 839 (1087)
.+++|++.+.++|||||+||||||||||||+++++|||+||||+||+|||++||+|+|||||+|+++++|+.++.||+++
T Consensus 520 ~~~~~~~~~~~~iiVaG~nfG~GSSREhAa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~d~~~~~~i~~Gd~l~ 599 (658)
T TIGR01342 520 RAKAADEKGKAGIIIAGENYGQGSSREHAALAPMFLGVEAVIAKSFARIHHANLFNFGILPLEFDNEEDYAKFELGDDIE 599 (658)
T ss_pred HhhcccccCCceEEEcCCcCCCCccHHHHHHHHHHHCCCEEEEecHHHHHHhhhhhcCcceEEecChhhHHHhCCCCEEE
Confidence 56677777889999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred Ecc-ccC-cCCCCcEEEEEEecCCeEEEEEEEecCCHHHHHHHHhCCCCCchh
Q psy3833 840 LVG-LKD-LAPGKPVTAQIKHADGKVEEIKLNHSMNEQQITWFQAELPTRIPA 890 (1087)
Q Consensus 840 I~~-l~~-l~pg~~v~v~v~~~dG~~~~~~l~~~lt~~E~e~~~aGGiLn~sr 890 (1087)
|++ +++ +.+|++..+... .+| +++.++|.+|+.|++|+++||+|||.+
T Consensus 600 id~~l~~~~~~g~~~~i~~~-~~g--~~~~~~~~l~~~e~ei~~aGGlln~~~ 649 (658)
T TIGR01342 600 IPDDLAAALADGEDEFTINK-NDD--EEALATLDASEREKEILAAGGKLNLIK 649 (658)
T ss_pred ECchhhhhcCCCCceEEEEe-cCC--eEEEEeCCCCHHHHHHHHcCCHHHHHH
Confidence 986 764 778876555433 344 578888899999999999999999764
No 12
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=7.4e-151 Score=1343.14 Aligned_cols=658 Identities=24% Similarity=0.365 Sum_probs=570.6
Q ss_pred cCCCCchhhhccc---cccCCCceeccccccccccchhhHHHHHHHHcCCCcccCCceeeecccccccCCCchhHHHHhh
Q psy3833 111 ASKGRTLADSSYE---AEQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGVEDLKRAKS 187 (1087)
Q Consensus 111 a~kGkTLAdKg~E---~VrpGe~V~l~~d~v~~qD~Tg~~a~~~~~~~g~~~v~~p~~~~~DH~v~a~~~~~~d~~~~~~ 187 (1087)
..+++||++|... ...+|++|.+++|++++||.|+|+++.+|+++|.++|.+|..+|+||++++..++.
T Consensus 31 ~~~~~TlaeKIL~~h~~~~~g~~v~~~vD~~~~~D~t~~~~~~~f~~~G~~~vp~~~v~~~DH~~~~~~g~~-------- 102 (751)
T PRK11413 31 EAKKGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIIQTAKASGMERFPLPYVLTNCHNSLCAVGGT-------- 102 (751)
T ss_pred HHhhCCHHHHHHHHhhCCCCCCEEEEEcceeeeehhhHHHHHHHHHHcCCCcCCCCEEEECCCCCcCCCCCC--------
Confidence 3567899999663 24688999999999999999999999999999999998888999999999876442
Q ss_pred hhHHHHHHHHHHHHhcCceecCCCCcceeeecccccccCCCeEecCCCCccCccccceeeccccHHHHHHHHhcCceEee
Q psy3833 188 QNEEVYAFLRSAGAKYGVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELK 267 (1087)
Q Consensus 188 ~n~e~~~fl~~~~~~~Gi~~~~pG~GIiHqv~lE~~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g~~~l~ 267 (1087)
.|.+.|+|+++|+++||+.||+||.|||||+++|+|++||++++||||||+ +||||+||||+|++|++.+|+|++||++
T Consensus 103 ~n~~~~~~~~~~a~k~Gi~f~~pg~GI~Hqv~~E~~a~PG~~ivGtDSHT~-~GalG~la~GvGgtd~a~~mag~~~~~k 181 (751)
T PRK11413 103 INEDDHVFGLSAAQKYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTR-YGALGTMAVGEGGGELVKQLLNDTYDID 181 (751)
T ss_pred ccHHHHHHHHHHHHHcCCcEECCCCCeECcCchhhccCCCcEEEeeCcCcc-cchhhhceeCCChHHHHHHHhCCeeecc
Confidence 356799999999999999999999999999999999999999999999996 8999999999999999999999999999
Q ss_pred cCcEEEEEEECcCCCCcchhHHHHHHHHHhcccCc-ccEEEEEeCCcccccCccccccccccccccccccccccccchhh
Q psy3833 268 CPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGG-TGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRIN 346 (1087)
Q Consensus 268 vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~~~G~-~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~~~v~ 346 (1087)
+||+|+|+|+|+|++||++|||||+|++.|+++|+ +|++|||+||||++||+++|+|||||
T Consensus 182 vPe~i~V~LtG~l~~gV~aKDviL~ii~~l~~~G~v~~k~vEF~G~gv~~LS~~~R~TI~NM------------------ 243 (751)
T PRK11413 182 YPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNGVDVM------------------ 243 (751)
T ss_pred CCCEEEEEEEeecCCCcCHHHHHHHHHHHHhhcCcccceEEEEECCccccCCHhHHhhhhhc------------------
Confidence 99999999999999999999999999999999999 79999999999999999999999999
Q ss_pred cccCCCccccccCCCccccccccccccccccccccccccccccccCCCCcccccccccCceeecccCcHHHHHHHHhcCC
Q psy3833 347 EYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLR 426 (1087)
Q Consensus 347 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL~~~~r 426 (1087)
++|+||++|+||+|++|++||+.++|
T Consensus 244 ------------------------------------------------------~~E~GA~~~ifp~De~t~~yL~~~gr 269 (751)
T PRK11413 244 ------------------------------------------------------TTETTCLSSIWQTDEEVHNWLALHGR 269 (751)
T ss_pred ------------------------------------------------------ccccCceEEEecCcHHHHHHHHhCCC
Confidence 89999999999999999999999998
Q ss_pred hHHHHHHHHhhccCCCCCCCcccEEEEEeCCCCccccccCCCCCccccccccchhhhh----------------------
Q psy3833 427 EDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKK---------------------- 484 (1087)
Q Consensus 427 ~~~~~~~~~~~~~l~aD~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~---------------------- 484 (1087)
.+ .| ..|.+|++|.|+++++||||+|||+||+|++|||++||+|+...+++
T Consensus 270 ~~------~~-~~l~~D~~A~Yd~~ieiDLs~leP~VA~P~~Pdnv~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (751)
T PRK11413 270 GQ------DY-CELNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDELNQNLTDILREVEIESERVAHGKAKLSLL 342 (751)
T ss_pred hh------hc-eeccCCCCCCeeEEEEEEcccceeeecCCCChhhCcChhhcccchhhhcchhhhhhhhhhhhhcccccc
Confidence 64 23 36899999999999999999999999999999999999999643221
Q ss_pred ---CCCccceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCC-CCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecC
Q psy3833 485 ---NGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSS-TPFNVTPGSEQIRATIERDGIAQTLREFGGTVLAN 560 (1087)
Q Consensus 485 ---~g~~~~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~-v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~p 560 (1087)
.+++++||+||||||||+|++||++||+||++ ++++.+ ++++|+|||++|+++|+++|++++|.+|||+|..|
T Consensus 343 ~ki~~~~~~Idq~~IGSCTNg~~eDl~~AA~ILkg---k~v~~~~v~~~V~PgS~~V~~~l~~~G~~~~l~~AGa~i~~~ 419 (751)
T PRK11413 343 DKIENGRLKVQQGIIAGCSGGNYENVIAAANALRG---QSCGNDTFSLSVYPSSQPVFMDLAKKGVVADLMGAGAIIRTA 419 (751)
T ss_pred ccccCCCcEeeeEEEecCCCCCHHHHHHHHHHhcC---cccCCCceeEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCC
Confidence 13466899999999999999999999999997 677754 89999999999999999999999999999999999
Q ss_pred CccccccCCCcccccCCcceeEEeecCCCCCCCCCCCCCc----ceeecCHHHHHHHHHh-CccccCCCCCCCCCCCCCC
Q psy3833 561 ACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPAT----HAFVTSPELVTALAIK-GTLAFDPRSDTLTGSDGKP 635 (1087)
Q Consensus 561 GCg~CiG~~~~~~v~~g~~~~~vsT~NRNF~gR~G~~p~~----~~yLaSp~lvAAsAia-G~I~fdp~~d~L~~~dG~~ 635 (1087)
|||+|+|++.. ..+|+ +++||+||||+||||++++. .+||+||+++||+|+. |+|+ ||+.- ..
T Consensus 420 gCgpCiG~~~~--~~~ge--~~isTsNRNF~GR~G~~~~~~ylasvyL~sp~~~Aasa~~gG~it-~p~~~-~~------ 487 (751)
T PRK11413 420 FCGPCFGAGDT--PANNG--LSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLT-SATEL-DC------ 487 (751)
T ss_pred chhhhhCcCCc--CCCCC--EEEeecCCCCCCCCCCccccceecccccCCHHHHHHHHHhCCccC-CHHHc-cc------
Confidence 99999999754 44455 68999999999999976543 3788899999999888 6999 88532 11
Q ss_pred eeecCCCCCCCCCCCcCCC---CccccCCCCCCCCceEecCCCCccccCCCCCCCCcccccccceeeeeecCccc-cccc
Q psy3833 636 FKLRDPFGDELPTKGFDPG---VDTYQPPPKDGSSLSVDVDPKSQRLQLLEPFDVWDKKDIKDMVVLIKVKGKCT-TDHI 711 (1087)
Q Consensus 636 v~l~dP~~~eip~~~~~~~---~~~~~~~~~~~~~v~~~~~p~S~~l~~l~pf~~~~~~~i~~arvLl~~gd~iT-TDhI 711 (1087)
..+.|++.|+.. ...|+.|..+.+++++..+||+..++..+|.+ +-.-.+|++|++|+|| ||||
T Consensus 488 -------~~~~p~~~~~~~~y~~~~~~~~~~~~~~~~~~~gPni~~~p~~~~l~-----~~~~~kv~~k~~D~itTTD~i 555 (751)
T PRK11413 488 -------WDNVPEYAFDVTPYKNRVYQGFGKGATQQPLIYGPNIKDWPEMGALT-----DNILLKVCSKILDPVTTTDEL 555 (751)
T ss_pred -------cccCCCcccCccccccccccCCCCCCCcceEEeCcCCCCCCCCCCCC-----CcEEEEEEEEeCCCCcccccc
Confidence 124444445532 35676666667788899999866655544443 3345678888899885 9999
Q ss_pred cCCCCcccccCccccccccccccccccccCcccceEe----ecCCCcCChHHHHHHHH--------------HcCCCcEE
Q psy3833 712 SAAGPWLKFRGHLDNISNNLFLTATNAENGEMNKVKN----QLTGQYGPVNEVARAYK--------------AAGVPWVA 773 (1087)
Q Consensus 712 sPAG~~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~----~~~G~~~~ipd~A~~yk--------------~~g~~~IV 773 (1087)
+|||+||+||||+++|++|+|.+..+.+.++.+.+++ +..|. +|++++.|+ +.|.++|
T Consensus 556 ~paG~~l~~Rsn~~~is~~~~~~~d~~~~~ra~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i- 631 (751)
T PRK11413 556 IPSGETSSYRSNPLGLAEFTLSRRDPGYVGRSKAVAELENQRLAGN---VSELTEVFARIKQIAGQEHIDPLQTEIGSM- 631 (751)
T ss_pred ccCCCccccccCHHHHhhhhccccChhhHHHHHHHhhhhhhhhcCC---cHHHHHHHHhhhhccccccccccccCceEE-
Confidence 9999999999999999999999998888777766554 34554 588888883 3455655
Q ss_pred ecCCCcCCCccchhhccccccccceEEEEechhHH-HhhhhccCccceEEecCCCCcccCCCCCEEEEccccCc--CCCC
Q psy3833 774 VGDENYGEGSSREHAALEPRHLGGRAIIVKSFARI-HETNLKKQGLLPLTFANPSDYDKIQPNDRISLVGLKDL--APGK 850 (1087)
Q Consensus 774 VAG~nyG~GSSRE~Aa~~~r~lGv~aVIA~SFarI-~~~Nlin~GllpL~f~~~~~~~~l~~gD~i~I~~l~~l--~pg~ 850 (1087)
|+|.||||||||||||++||+||++||||+||||| ||+||||+|||||+|.++. +|+.||+|+|+++++. .++.
T Consensus 632 v~~~nyG~GSSREhAAla~r~LGi~AVIAkSFARIf~RsNlIN~GilpL~f~~~~---~i~~GD~l~id~~~~~l~~~~~ 708 (751)
T PRK11413 632 VYAVKPGDGSAREQAASCQRVLGGLANIAEEYATKRYRSNVINWGMLPFQMAEEP---TFEVGDYIYIPGIRAALDNPGT 708 (751)
T ss_pred EEEeCCCCCccHHHHHHHHHHhCceEEEEeeehHHHHhhhhhhcCccceecCchh---hCCCCCEEEEechhhhhhcCCC
Confidence 55599999999999999999999999999999999 7779999999999998753 8999999999988764 3344
Q ss_pred cEEEEEEecCCeEEEEEEEe-cCCHHHHHHHHhCCCCCchh
Q psy3833 851 PVTAQIKHADGKVEEIKLNH-SMNEQQITWFQAELPTRIPA 890 (1087)
Q Consensus 851 ~v~v~v~~~dG~~~~~~l~~-~lt~~E~e~~~aGGiLn~sr 890 (1087)
.++..+++.+|+.+.+++++ ++|+.|++||++||+|||.+
T Consensus 709 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~eil~aGGllny~k 749 (751)
T PRK11413 709 TFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGCLINYNK 749 (751)
T ss_pred ceeEEEEeCCCceeeEEEEeCCCCHHHHHHHHcCCHHHHhh
Confidence 67888887777788899994 99999999999999999653
No 13
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=4.9e-141 Score=1253.66 Aligned_cols=625 Identities=24% Similarity=0.344 Sum_probs=509.3
Q ss_pred ccCCCceeccccccccccchhhHHHHHHHHcCCCcccCCce--eeecccccccCCCchhHHHHhhhhHHHHHHHHHHHHh
Q psy3833 125 EQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPST--IHCDHLIEAQVGGVEDLKRAKSQNEEVYAFLRSAGAK 202 (1087)
Q Consensus 125 VrpGe~V~l~~d~v~~qD~Tg~~a~~~~~~~g~~~v~~p~~--~~~DH~v~a~~~~~~d~~~~~~~n~e~~~fl~~~~~~ 202 (1087)
|++|++|.++||++++||.|+||+ .+|.++|.++|+.|.+ +++||++|+.. . .|.+.|+|+++||++
T Consensus 22 v~~G~~i~i~vD~~l~hD~t~p~~-~~~~~~g~~~V~~p~~~v~~~DH~v~~~~-----~-----~~~~~~~~l~~fAkk 90 (712)
T TIGR00139 22 VHSGDYVSIKPAHCMSHDNSWPCA-LKFMGIGASKIHNPDQIVMTLDHDIQNKS-----D-----KNLKKYKNIEEFAKK 90 (712)
T ss_pred cCCCCEEEEecCEEEEEeccHHHH-HHHHHcCCCccCCCCCEEEEcCCCCCCCC-----H-----HHHHHHHHHHHHHHH
Confidence 679999999999999999999996 4588999999999964 58999998743 2 356889999999999
Q ss_pred cCceecCCCCcceeeeccc-ccccCCCeEecCCCCccCccccceeeccccHHHHHHHHhcCceEeecCcEEEEEEECcCC
Q psy3833 203 YGVGFWHPGSGIIHQIILE-NYAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLK 281 (1087)
Q Consensus 203 ~Gi~~~~pG~GIiHqv~lE-~~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g~~~l~vPe~V~V~l~G~l~ 281 (1087)
|||.|++||+|||||+++| +|++||++++|+||||||+|||||||||+|++|++.+|+||++|++|||+|+|+|+|+|+
T Consensus 91 ~Gi~f~~~g~GI~Hqv~~E~g~a~PG~~ivGsDSHT~t~GalGala~GvG~tDva~amatg~~w~~vPe~v~V~ltG~L~ 170 (712)
T TIGR00139 91 HGIDFYPAGRGIGHQIMIEEGFAFPGNLAVASDSHSNMYGGLGCLGTPIVRTDAAAIWATGKTWWQIPPVAKVEFKGQLP 170 (712)
T ss_pred hCCeEECCCCCeEeEeecccCcccCCeEEEccCcCcCccchhhheeeccchHHHHHHHhhCCEeccCCCEEEEEEecccC
Confidence 9999999999999999999 599999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHHHhcccCcccEEEEEeC--CcccccCccccccccccccccccccccccccchhhcccCCCccccccC
Q psy3833 282 GWTSSKDVILKVAGILTVKGGTGAIIEYHG--PGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCT 359 (1087)
Q Consensus 282 ~gVt~kDviL~i~g~L~~~G~~g~ivEf~G--~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~~~v~~y~~~~~~~~~~~ 359 (1087)
+||++|||||+|+++|+++|++|++|||+| |||++||+++|+|||||
T Consensus 171 ~gV~aKDviL~l~~~l~~~g~~g~~iEf~G~~~gv~~Ls~~~R~TI~NM------------------------------- 219 (712)
T TIGR00139 171 PGVSGKDIIVALCGLFNKDDVLNHAIEFTGSEDSLNALPIDHRLTIANM------------------------------- 219 (712)
T ss_pred CCCCHHHHHHHHHHHhccCCcceEEEEEecCcchhhcCCHHHHhhHhhh-------------------------------
Confidence 999999999999999999999999999999 99999999999999999
Q ss_pred CCccccccccccccccccccccccccccccccCCCCcccccccccCceeecccCcHHHHHHHHhcCCh------------
Q psy3833 360 GMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLRE------------ 427 (1087)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL~~~~r~------------ 427 (1087)
++|+||++++||+|++|++||+.++|.
T Consensus 220 -----------------------------------------~~E~GA~tgifp~De~t~~yL~~~~~~~~~~~~~~~~~~ 258 (712)
T TIGR00139 220 -----------------------------------------TTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPFIN 258 (712)
T ss_pred -----------------------------------------hHhhCceeeEecCChHHHHHHHhcCcccccccccccccc
Confidence 899999999999999999999998652
Q ss_pred ----HHH--HHHHHhhccCCCCCCCcccEEEEEeCCCCccccccCCCCCccccccccchhhhhCCCccceeEEEEeccCC
Q psy3833 428 ----DIA--KEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTN 501 (1087)
Q Consensus 428 ----~~~--~~~~~~~~~l~aD~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~~g~~~~Id~vfIGSCTn 501 (1087)
++. ...+.++..|.+|+||.|+++++||||+|+|+||+|++|||++|++++... + ++||+||||||||
T Consensus 259 ~~~~r~~~~~~~~~~~~~l~aD~~A~Y~~~~~iDLs~leP~vA~P~~p~~~~~v~el~~~----~--~~Id~~~IGSCTN 332 (712)
T TIGR00139 259 PAAERFTHPALEEKAEIPLKADKDAHYAKELFIDLASLSHYVSGPNSVKVANPLKDLEAQ----D--IKIDKAYLVSCTN 332 (712)
T ss_pred hhHHHHHHHHHHHHhhccCCCCCCCCEEEEEEEEcccceeeeeCCCCCCCcCcHHHhhhc----C--ceeeeEEEecCCC
Confidence 100 111223346899999999999999999999999999999999999998321 2 3699999999999
Q ss_pred CChHHHHHHHHHHHHhH------hCCCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCccccccCCCccccc
Q psy3833 502 ASYEDMSRCASIAKEAM------AHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVK 575 (1087)
Q Consensus 502 ~~~~dl~aAA~ilk~a~------~~~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~v~ 575 (1087)
+|++||++||+||++|. .+++++.|+++|+|||++|+++|+++|++++|.+|||+|..||||+|+|++.+ .++
T Consensus 333 ~r~~Dl~~AA~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~Gl~~~l~~AGa~i~~~gCg~CiG~~~~-~~~ 411 (712)
T TIGR00139 333 SRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGNGAWEKLLEAGAIPLPAGCGPCIGLGAG-LLE 411 (712)
T ss_pred CCcHHHHHHHHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCC-CCC
Confidence 99999999999999642 25678899999999999999999999999999999999999999999999875 355
Q ss_pred CCcceeEEeecCCCCCCCCCCCCCcceeecCHHHHHHHHHhCccccCCCCCCCCCCCCCC-eeecCCCCCCCCCCCcCCC
Q psy3833 576 MGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAIKGTLAFDPRSDTLTGSDGKP-FKLRDPFGDELPTKGFDPG 654 (1087)
Q Consensus 576 ~g~~~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvAAsAiaG~I~fdp~~d~L~~~dG~~-v~l~dP~~~eip~~~~~~~ 654 (1087)
+|+ ++|||+||||+|||| ++.+++|||||++||||||+|+|+ ||+.- ..+.+-+ +....|...+.|+. +...
T Consensus 412 ~ge--v~isT~NRNF~GRmG-~~~a~~YLaSP~~vAAsAl~G~It-dPr~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~ 484 (712)
T TIGR00139 412 PGE--VGISASNRNFKGRMG-SKDAKAYLASPAVVAASALLGKIS-GPAEV--LSPEGWTEIIFGEGDGIKEEDR-MLTN 484 (712)
T ss_pred CCC--EEEEecCCCCCCCCC-CCCCcEEECCHHHHHHHHhcCccC-CHHHH--hcccccccccccccccccCccc-ccCc
Confidence 666 689999999999999 467899999999999999999999 88642 1111111 10111222222211 1111
Q ss_pred Cccc------cCCCCC--CCCceEecCCCC-----ccccCCCCCCCCcccccccceeeeeecCccccccccCCCCccccc
Q psy3833 655 VDTY------QPPPKD--GSSLSVDVDPKS-----QRLQLLEPFDVWDKKDIKDMVVLIKVKGKCTTDHISAAGPWLKFR 721 (1087)
Q Consensus 655 ~~~~------~~~~~~--~~~v~~~~~p~S-----~~l~~l~pf~~~~~~~i~~arvLl~~gd~iTTDhIsPAG~~L~~r 721 (1087)
+.++ ..++.. .....+ -.|++ ..++.+++|+ +....+++++++|+|+||||+|++ |+ ++
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~i~g~v~~~~gdnI~TD~I~P~~-~~-~~ 556 (712)
T TIGR00139 485 EEALEKIIGIIDDLVADEEKNAAS-EAPAQEESEQGLTEILEGFP-----EEFSGELVFCDADNINTDGIYPGK-YT-YQ 556 (712)
T ss_pred HHHHhhhhhhccCccccchhcccc-cccccchhccCCCCcCCCCC-----ceEEEEEEEcCCCCCchhhccchh-hc-cc
Confidence 1111 211110 000000 01111 1345555664 456789999999999999999985 77 44
Q ss_pred Cc--cccccccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEEecCCCcCCCccchhhccccccccceE
Q psy3833 722 GH--LDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENYGEGSSREHAALEPRHLGGRA 799 (1087)
Q Consensus 722 g~--~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG~nyG~GSSRE~Aa~~~r~lGv~a 799 (1087)
.+ .+.++.++|.+ ..|+|+.+++. +.|||||+|||||||||||+++++.+||++
T Consensus 557 ~~~~~~~l~~~~~~~---------------------~dp~f~~~~~~---g~iiVaG~NfG~GSSREhA~~al~~~Gi~~ 612 (712)
T TIGR00139 557 DDVPKEKMAQVCMEN---------------------YDAEFRTKAHE---GDILVSGFNFGCGSSREQAATAILAKGINL 612 (712)
T ss_pred CCCCHHHHHHhhccC---------------------CCcchhhcCCC---CCEEEeCCccCCCCcHHHHHHHHHHcCCcE
Confidence 32 33566666642 24778777654 479999999999999999999999999999
Q ss_pred EEEechhHHHhhhhccCccceEEecCCCCcccCC-------------CCCEEEEccccCcCCCCcEEEEEEecC----Ce
Q psy3833 800 IIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQ-------------PNDRISLVGLKDLAPGKPVTAQIKHAD----GK 862 (1087)
Q Consensus 800 VIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l~-------------~gD~i~I~~l~~l~pg~~v~v~v~~~d----G~ 862 (1087)
|||+||+|||+||++|+|||||+|++ .++.|. .||+++|+ + ..| .| ++ +.+ ++
T Consensus 613 ViA~SFarIf~rN~iN~Gl~~l~~~~--~~~~l~~~~~~~~~~~~~~~Gd~l~vD-~---~~g-~i--~~-t~g~~~~~~ 682 (712)
T TIGR00139 613 VVSGSFGNIFSRNSINNALLGLEIPA--LIKKLREKFGGADKELTRRTGWFLKWD-V---ADA-KI--EV-QEGSLDGGP 682 (712)
T ss_pred EEEchHHHHHHhHHHhcCCceEEchh--HHHHHHhhhcccccccccCCCCEEEEE-c---cCC-EE--EE-CCCcccccc
Confidence 99999999999999999999999975 345555 79999997 2 222 23 33 322 33
Q ss_pred EEEEEEEecCCHHHHHHHHhCCCCCch
Q psy3833 863 VEEIKLNHSMNEQQITWFQAELPTRIP 889 (1087)
Q Consensus 863 ~~~~~l~~~lt~~E~e~~~aGGiLn~s 889 (1087)
.+++++. .+++.-++++.+||+++|.
T Consensus 683 ~~~~~~~-~~p~~~~eii~~GGl~~~~ 708 (712)
T TIGR00139 683 ILEHKVG-ELGKNLQEIIAKGGLEGWV 708 (712)
T ss_pred eeEEEcC-CCCHHHHHHHHcCCHHHHH
Confidence 4566665 6899999999999999853
No 14
>KOG0452|consensus
Probab=100.00 E-value=9.3e-137 Score=1151.89 Aligned_cols=682 Identities=31% Similarity=0.477 Sum_probs=586.5
Q ss_pred CceeccccccccccchhhHHHHHHHHc-------C-CC-c--ccCCceeeecccccccCCCchhH-----HHHhhhhHHH
Q psy3833 129 PHSRLRPDRVAMQDATAQMAMLQFISS-------G-LP-R--VAVPSTIHCDHLIEAQVGGVEDL-----KRAKSQNEEV 192 (1087)
Q Consensus 129 e~V~l~~d~v~~qD~Tg~~a~~~~~~~-------g-~~-~--v~~p~~~~~DH~v~a~~~~~~d~-----~~~~~~n~e~ 192 (1087)
-.|.++|.||++||+||.+|+.+|+++ | .+ + ...|.++++||+++.+..+..|. ..++++|+|+
T Consensus 77 vEvpFkPARViLQDFTGvPavVD~AaMRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r~~~alqkN~~lEF~RNkER 156 (892)
T KOG0452|consen 77 VEVPFKPARVILQDFTGVPAVVDFAAMRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFARSADALQKNQELEFERNKER 156 (892)
T ss_pred eeeccccceeeeecccCCchheeHHHHHHHHHHcCCCHHHcCCCCCcceEeeeeeEEeeccCHHHHhhcceeeeecchhh
Confidence 358899999999999999999998763 3 33 3 36789999999999988766552 3567899999
Q ss_pred HHHHHHHHHhc-CceecCCCCcceeeecccc----------cccCCCeEecCCCCccCccccceeeccccHHHHHHHHhc
Q psy3833 193 YAFLRSAGAKY-GVGFWHPGSGIIHQIILEN----------YAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMAD 261 (1087)
Q Consensus 193 ~~fl~~~~~~~-Gi~~~~pG~GIiHqv~lE~----------~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~ 261 (1087)
+.|++|-++.| ++.++|||+||+||++||. +..||. ++||||||+|..|||+++|||||.|++++|+|
T Consensus 157 f~FlKWgs~af~NmlivPPGsGivHQvNLEYLaRvVF~~~~~lyPDS-vVGTDSHtTMidGlGvlGWGVGGIEaEAvMLG 235 (892)
T KOG0452|consen 157 FTFLKWGSRAFDNMLIVPPGSGIVHQVNLEYLARVVFESKDLLYPDS-VVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLG 235 (892)
T ss_pred hhhhhhhhHhhcceEEeCCCCceeEEeehhhhhheeeccCceecccc-cccccCcceeecccceeeccccceehhhhhhc
Confidence 99999999998 8889999999999999995 568997 89999999999999999999999999999999
Q ss_pred CceEeecCcEEEEEEECcCCCCcchhHHHHHHHHHhcccCcccEEEEEeCCcccccCccccccccccccccccccccccc
Q psy3833 262 IPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPY 341 (1087)
Q Consensus 262 g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~ 341 (1087)
+|+.|-+|++|+.+|+|+|.|+||++|+||.|++.|+..|++||+|||+|+|+..||+.+|+||+||
T Consensus 236 qpiSmvlP~ViG~~L~Gkl~~~vTstDlVLtiTk~LRq~GVvGKFVEF~G~Gva~LSiaDRaTIaNM------------- 302 (892)
T KOG0452|consen 236 QPISMVLPEVIGYKLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANM------------- 302 (892)
T ss_pred CchheecccceeEEeccccCCCceeehhhhhHHHHHHHhccceeeEEEecCccceechhhhhhhhhc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhcccCCCccccccCCCccccccccccccccccccccccccccccccCCCCcccccccccCceeecccCcHHHHHHH
Q psy3833 342 NKRINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFL 421 (1087)
Q Consensus 342 ~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL 421 (1087)
++|+|||.|+||.|+.|++||
T Consensus 303 -----------------------------------------------------------cPEYGAt~gfFPvD~vtl~yl 323 (892)
T KOG0452|consen 303 -----------------------------------------------------------CPEYGATMGFFPVDEVTLQYL 323 (892)
T ss_pred -----------------------------------------------------------CccccceeeeeccchhHHHHH
Confidence 899999999999999999999
Q ss_pred HhcCChHH-HHHHHHhh-------ccCCCCCCCcccEEEEEeCCCCccccccCCCCCccccccccchhhhh---------
Q psy3833 422 KATLREDI-AKEAMKYQ-------SLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKK--------- 484 (1087)
Q Consensus 422 ~~~~r~~~-~~~~~~~~-------~~l~aD~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~--------- 484 (1087)
+.|+|++. .+..++|. ....++.+..|.+++++||++++|.|++|.+|+|.++|+++..+...
T Consensus 324 ~~Tgrs~~~~~~i~~yLka~~~f~~~~~~~q~p~yt~~l~l~L~~vvp~vSGPKRPhDrV~v~dmk~Df~scL~~~vgFK 403 (892)
T KOG0452|consen 324 KQTGRSEEKLDIIEKYLKAVKMFRDYNDPSQDPVYTQVLELDLGTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVGFK 403 (892)
T ss_pred HHcCCcHHHHHHHHHHHHHHhhhhhccCcccCcceeeEEEEecCceeeccCCCCCCccccchhhHHHHHHHhhcCccccc
Confidence 99999763 34445443 23356778999999999999999999999999999999999776421
Q ss_pred -----------------CCCcc-----ceeEEEEeccCCCChHH-HHHHHHHHHHhHhCCCCCC--CCEEEecCcHHHHH
Q psy3833 485 -----------------NGWPM-----DIKVSLIGSCTNASYED-MSRCASIAKEAMAHGLKSS--TPFNVTPGSEQIRA 539 (1087)
Q Consensus 485 -----------------~g~~~-----~Id~vfIGSCTn~~~~d-l~aAA~ilk~a~~~~~~~~--v~~~v~PgS~~v~~ 539 (1087)
+|.+. .|.++.|+||||++++. |..||+++|+|++.|+..+ +|++++|||.+|..
T Consensus 404 gFai~~e~q~~~v~f~~~g~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgLlAKkAv~~GL~v~PyikTSLsPGSgvVt~ 483 (892)
T KOG0452|consen 404 GFAIAPEAQSKSVEFQYDGTTAKLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVVTK 483 (892)
T ss_pred ccccChhHhhceEEEEECCeeeEeccCcEEEEEEecccCCCCcHHhhhhhHHHHHHHhcCceecceeecccCCCCchhhh
Confidence 12221 48899999999999986 9999999999999998766 49999999999999
Q ss_pred HHHHcChHHHHHhcCcEEecCCccccccCCCc------ccccCCcc-eeEEeecCCCCCCCCCCCCCcc-eeecCHHHHH
Q psy3833 540 TIERDGIAQTLREFGGTVLANACGPCIGQWNR------KDVKMGEK-NTIVNSYNRNFTGRNDANPATH-AFVTSPELVT 611 (1087)
Q Consensus 540 ~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~------~~v~~g~~-~~~vsT~NRNF~gR~G~~p~~~-~yLaSp~lvA 611 (1087)
||.+.|++.+|.+.||.|.++||++|+||++. ..+..++. .+.|.|+||||+||+. |.++ +|||||+||+
T Consensus 484 YL~~SGv~pyL~klGF~IvGYGC~TCiGNsgpl~e~V~~ai~~ndlV~~gvLSGNrNFEGRvh--p~tRANYLASPpLvv 561 (892)
T KOG0452|consen 484 YLSESGVLPYLEKLGFDIVGYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVH--PNTRANYLASPPLVV 561 (892)
T ss_pred hhhhccchhHHHhcCceeeccccceeccCCCCCCHHHHHhhhcCCeEEEEEeecCCCcccccc--ccchhhhccCchHHh
Confidence 99999999999999999999999999999874 12333442 2457899999999995 4554 5999999999
Q ss_pred HHHHhCccccCCCCCCC-CCCCCCCeeecC--CCCCCCCC---CC------------cCCCCccccCCCCCCCCceEecC
Q psy3833 612 ALAIKGTLAFDPRSDTL-TGSDGKPFKLRD--PFGDELPT---KG------------FDPGVDTYQPPPKDGSSLSVDVD 673 (1087)
Q Consensus 612 AsAiaG~I~fdp~~d~L-~~~dG~~v~l~d--P~~~eip~---~~------------~~~~~~~~~~~~~~~~~v~~~~~ 673 (1087)
|+||+|++.+|.++++| .++||+.++|+| |+.+|+.+ +. .+.+...|+....+ ++..|.|+
T Consensus 562 aYaiaGtV~IDfe~eplg~~~~Gk~vfl~DIWPtr~Ev~~ve~~~Vip~mFk~~y~~I~~gn~~Wn~L~~p-~~~Ly~Wd 640 (892)
T KOG0452|consen 562 AYAIAGTVNIDFETEPLGVDPDGKNVFLRDIWPTREEVAEVEEEHVIPSMFKEVYEKIELGNPDWNQLEVP-SSKLYPWD 640 (892)
T ss_pred hhhhcceeecceeccccccCCCCCeEEEeecCCCHHHHHHHHHhcccHHHHHHHHHHHhhcChhhhhccCC-ccceeccC
Confidence 99999999999999999 789999999999 98888774 11 22356778876554 45789999
Q ss_pred CCCccccCCCCCCCC-----cccccccceeeeeecCccccccccCCCC---------cccccCccccccccc--------
Q psy3833 674 PKSQRLQLLEPFDVW-----DKKDIKDMVVLIKVKGKCTTDHISAAGP---------WLKFRGHLDNISNNL-------- 731 (1087)
Q Consensus 674 p~S~~l~~l~pf~~~-----~~~~i~~arvLl~~gd~iTTDhIsPAG~---------~L~~rg~~~~i~~~~-------- 731 (1087)
|+||||..+|+|+.+ ...++.+++||+.+||++|||||||||. ||..||..+..+|..
T Consensus 641 ~~STYI~~ppfF~~mT~~~p~~~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg~tprdFNsYGsRRGND~ 720 (892)
T KOG0452|consen 641 PKSTYIKEPPFFEGMTRDLPGPQSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDA 720 (892)
T ss_pred CCCceecCCccccccccCCCCcccccceeEEEeccCcccccccCCCccccccCHHHHHHHhcCCChhhccccccccCchh
Confidence 999999999999754 2468999999999999999999999995 565555433322211
Q ss_pred --ccccc------ccc-cCcccceEeecCCCcCChHHHHHHHHHcCCCcEEecCCCcCCCccchhhccccccccceEEEE
Q psy3833 732 --FLTAT------NAE-NGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENYGEGSSREHAALEPRHLGGRAIIV 802 (1087)
Q Consensus 732 --l~~~~------n~~-~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG~nyG~GSSRE~Aa~~~r~lGv~aVIA 802 (1087)
-+|.+ |.. ...+..+.|.|+|+..+++|+|++|+.+|.|.||+||+.||+|||||||||+|.+|||+||||
T Consensus 721 vMaRGTFANIrlvNkl~~k~gP~TvHiPsge~ldvFdAA~~Y~~~g~p~iilaGkeYGsGsSRDWAAKGP~LlGvKAVia 800 (892)
T KOG0452|consen 721 VMARGTFANIRLVNKLLSKVGPKTVHIPSGEELDVFDAAERYKSEGIPLIILAGKEYGSGSSRDWAAKGPFLLGVKAVIA 800 (892)
T ss_pred hhhcccchhhHHHHHHhcccCCceEecCCCCeecHhhHHHHHHhcCCceEEEeccccCCCCccchhhcCchhhhhHHHHH
Confidence 11111 000 112446889999999999999999999999999999999999999999999999999999999
Q ss_pred echhHHHhhhhccCccceEEecCCCCccc--CCCCCEEEEccccC-cCCCCcEEEEEEecCCeEEEEEEEecCCHHHHHH
Q psy3833 803 KSFARIHETNLKKQGLLPLTFANPSDYDK--IQPNDRISLVGLKD-LAPGKPVTAQIKHADGKVEEIKLNHSMNEQQITW 879 (1087)
Q Consensus 803 ~SFarI~~~Nlin~GllpL~f~~~~~~~~--l~~gD~i~I~~l~~-l~pg~~v~v~v~~~dG~~~~~~l~~~lt~~E~e~ 879 (1087)
+||+||||+||++|||+||+|..+++.|. |.+-|.++|.-.++ ++||+.++++ ..+|+.|+..+++ .|+.|+.|
T Consensus 801 eS~ErIHrsnLvGmGIiPl~f~~Ge~AdtLgLtG~E~yti~lP~~~lkPgq~i~v~--~dtGk~F~~~~rF-dteVelty 877 (892)
T KOG0452|consen 801 ESYERIHRSNLVGMGIIPLQFLPGEDADTLGLTGRERYTIHLPENILKPGQDITVT--TDTGKVFVCTLRF-DTEVELTY 877 (892)
T ss_pred HHHHHHHhhccccceeeeeeecCCCChhhcCcccceeEEEECCcccCCCCceEEEE--ecCCcEEEEEEEe-cceEEEEE
Confidence 99999999999999999999999988885 68889999986666 8999877754 5678888777763 38999999
Q ss_pred HHhCCCCCch
Q psy3833 880 FQAELPTRIP 889 (1087)
Q Consensus 880 ~~aGGiLn~s 889 (1087)
|++||+|||.
T Consensus 878 y~~GGiL~y~ 887 (892)
T KOG0452|consen 878 YKNGGILNYM 887 (892)
T ss_pred EecCCcHHHH
Confidence 9999999985
No 15
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=3.4e-118 Score=1010.62 Aligned_cols=411 Identities=80% Similarity=1.299 Sum_probs=394.3
Q ss_pred ccccccchhhHHHHHHHHcCCCcccCCceeeecccccccCCCchhHHHHhhhhHHHHHHHHHHHHhcCceecCCCCccee
Q psy3833 137 RVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGVEDLKRAKSQNEEVYAFLRSAGAKYGVGFWHPGSGIIH 216 (1087)
Q Consensus 137 ~v~~qD~Tg~~a~~~~~~~g~~~v~~p~~~~~DH~v~a~~~~~~d~~~~~~~n~e~~~fl~~~~~~~Gi~~~~pG~GIiH 216 (1087)
||++||.|||+++++|+++|.+++++|..+++||++|+++.+..|.+.++.+|+++|+|+|||+++|||.|++||+||||
T Consensus 1 rv~~~D~tg~~a~~~f~~~g~~~v~~p~~~~~DH~~~~~~~~~~~~~~a~~~n~~~~~~~r~~a~~~gi~~~~~g~GI~H 80 (412)
T cd01584 1 RVAMQDATAQMALLQFMSSGLPKVAVPSTIHCDHLIEAQVGGEKDLKRAKDINKEVYDFLASAGAKYGIGFWKPGSGIIH 80 (412)
T ss_pred CeeEEecccHHHHHHHHHhCCCCCCCCCeEEeCCCccccccCCCchhhhhhhhHHHHHHHHHHHHHcCCeEECCCCCeec
Confidence 78999999999999999999999999999999999999887778899888899999999999999999999999999999
Q ss_pred eecccccccCCCeEecCCCCccCccccceeeccccHHHHHHHHhcCceEeecCcEEEEEEECcCCCCcchhHHHHHHHHH
Q psy3833 217 QIILENYAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGI 296 (1087)
Q Consensus 217 qv~lE~~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i~g~ 296 (1087)
|+++|++++||++++|+||||||+||||+||||||++|++.+|+|++|||++||+|+|+|+|+|++||++|||||+|++.
T Consensus 81 qv~~E~~~~PG~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vPe~i~v~l~G~l~~gV~aKDliL~ii~~ 160 (412)
T cd01584 81 QIVLENYAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCPKVIGVKLTGKLSGWTSPKDVILKVAGI 160 (412)
T ss_pred eEchhhccCCCCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCCCEEEEEEEcccCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCcccEEEEEeCCcccccCccccccccccccccccccccccccchhhcccCCCccccccCCCccccccccccccccc
Q psy3833 297 LTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGATTS 376 (1087)
Q Consensus 297 L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (1087)
|+++|++|++|||+|+|+++||+++|||||||
T Consensus 161 l~~~G~~~~~vEf~G~gi~~Ls~~~R~Ti~NM------------------------------------------------ 192 (412)
T cd01584 161 LTVKGGTGAIVEYFGPGVDSLSCTGMGTICNM------------------------------------------------ 192 (412)
T ss_pred hCcCCcceEEEEEECcccccCChhhhcchhhc------------------------------------------------
Confidence 99999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCcccccccccCceeecccCcHHHHHHHHhcCChHHHHHHHHhh-ccCCCCCCCcccEEEEEe
Q psy3833 377 VFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAKEAMKYQ-SLLTPDEGAKYDQLIELD 455 (1087)
Q Consensus 377 ~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL~~~~r~~~~~~~~~~~-~~l~aD~dA~Y~~vieiD 455 (1087)
++|+||++++||+|++|++||+.++|++.++.++.|+ ..|.+|+||.|+++++||
T Consensus 193 ------------------------a~E~GA~~gi~~~D~~t~~yl~~~~~~~~~~~~~~y~~~~l~~D~da~Y~~~i~iD 248 (412)
T cd01584 193 ------------------------GAEIGATTSVFPYNERMKKYLKATGRAEIADLADEFKDDLLVADEGAEYDQLIEIN 248 (412)
T ss_pred ------------------------chhhCceEEEecCChhHHHHHHhcCchHHHHHHHHHHhcccCCCCCCCeEEEEEEE
Confidence 8999999999999999999999999988788888886 678999999999999999
Q ss_pred CCCCccccccCCCCCccccccccchhhhhCCCccceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEecCcH
Q psy3833 456 LNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSE 535 (1087)
Q Consensus 456 Ls~ieP~vA~P~~Pd~v~~lse~~~~~~~~g~~~~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS~ 535 (1087)
||+|||+||+|++|||++||+|+.+.+.+.|++.+||+||||||||+|++||++||+|||+|+++|+++++|++|+|||+
T Consensus 249 ls~leP~va~P~~P~nv~~v~e~~~~~~~~g~~~~Id~a~IGSCTNgr~~Dl~~AA~ilk~a~~~g~~v~vr~~v~PgS~ 328 (412)
T cd01584 249 LSELEPHINGPFTPDLATPVSKFKEVAEKNGWPLDLRVGLIGSCTNSSYEDMGRAASIAKQALAHGLKCKSIFTITPGSE 328 (412)
T ss_pred cccceEeecCCCChhcCcChhHcChhhhccCCceeEEEEEEeccCCCChHHHHHHHHHHhhHHhCCCCCCCcEEEeCCCH
Confidence 99999999999999999999999987666788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcChHHHHHhcCcEEecCCccccccCCCcccccCCcceeEEeecCCCCCCCCCCCCCcceeecCHHHHHHHHH
Q psy3833 536 QIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAI 615 (1087)
Q Consensus 536 ~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~v~~g~~~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvAAsAi 615 (1087)
+|+++|+++|++++|.+|||+|..||||+|+|++.+..+++|+.+++|||+||||+||||+++.+++|||||++||||||
T Consensus 329 ~V~~~~~~~Gl~~~l~~aG~~i~~pgCg~C~G~~~~~~~~~g~~~~~vsT~NRNF~GR~gg~~~~~~YLaSP~~vaAsAi 408 (412)
T cd01584 329 QIRATIERDGLLQTFRDAGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPATHAFVASPEIVTAMAI 408 (412)
T ss_pred HHHHHHHHCCcHHHHHHcCCEEcCCcccccccCCCCcccCCCCceEEEEecCCCCCCCCCCCCCceEEeCCHHHHHHHHh
Confidence 99999999999999999999999999999999987534767887789999999999999767889999999999999999
Q ss_pred hCcc
Q psy3833 616 KGTL 619 (1087)
Q Consensus 616 aG~I 619 (1087)
+|++
T Consensus 409 ~G~~ 412 (412)
T cd01584 409 AGTL 412 (412)
T ss_pred cccC
Confidence 9985
No 16
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=2.5e-119 Score=1017.69 Aligned_cols=494 Identities=26% Similarity=0.375 Sum_probs=459.6
Q ss_pred ccCCeecceeccC-----------Ccccccc--------------cc--CceeEEeecCCCCCcHHHhh----hcccccc
Q psy3833 27 EMNGSYSPVSWNG-----------NVSTLEM--------------LN--GSLDSSLACSPSSPCKEARA----KLVKPKS 75 (1087)
Q Consensus 27 ~~~~~~~~~~~~~-----------~~~~~e~--------------~~--~~~~~~~~~~~~~~~~~~~~----~l~~~~~ 75 (1087)
-+||+|+|||||+ +|++||| .+ |+++++|+++|++++||||| ||||||+
T Consensus 264 vlG~~IaPIFfnT~ed~GalPI~~dv~~l~~Gdvi~i~py~gki~~~~~ge~v~~f~lkt~~lldevrAGgripliiGrg 343 (852)
T COG1049 264 VLGGKIAPIFFNTMEDAGALPIEVDVSNLEMGDVIDIYPYEGKIRNNNTGEVVATFSLKTDVLLDEVRAGGRIPLIIGRG 343 (852)
T ss_pred eecCeecceeeeehhhcCCCceEeeeccccccceEEeeccCCeeeccCCCcEEEEeecCchhHHHHHhcCCceeEEEccc
Confidence 3799999999999 8999999 23 99999999999999999999 9999999
Q ss_pred chhhHHHhhCCCcccccccCChhHHHHHHHHHhhhcCCCCchhhh------ccccccCCCceeccccccccccchhhHHH
Q psy3833 76 LVEKARLNVATEKSLYLSSLNKEEQYASWMAACRLASKGRTLADS------SYEAEQTGPHSRLRPDRVAMQDATAQMAM 149 (1087)
Q Consensus 76 l~~~~~~~l~~~~~l~~~~~~~eeq~a~wmaA~~la~kGkTLAdK------g~E~VrpGe~V~l~~d~v~~qD~Tg~~a~ 149 (1087)
||+|||++||+|.+..|+... .++ .++||+||||| |+.++|||+||++++++|++||+||||+.
T Consensus 344 Lt~kAr~~Lgl~~s~~F~~p~---~p~-------~sgkG~TlaqKmvgrAcGv~girpGtycepkmttVGSQDTTGpMTr 413 (852)
T COG1049 344 LTTKAREALGLEASDVFRKPK---APA-------ESGKGFTLAQKMVGRACGVPGIRPGTYCEPKMTTVGSQDTTGPMTR 413 (852)
T ss_pred ccHHHHHHcCCChhhhccCCC---Ccc-------ccCCcccHHHHHhhhccCCccccCCCcccceeeeeccccCCCCccH
Confidence 999999999999998887443 233 37999999999 55679999999999999999999999999
Q ss_pred HHHH---HcCCC-cccCCceeeecccccccCCCchhHHHHhhhhHHHHHHHHHHHHhcCceecCCCCcceeeeccccccc
Q psy3833 150 LQFI---SSGLP-RVAVPSTIHCDHLIEAQVGGVEDLKRAKSQNEEVYAFLRSAGAKYGVGFWHPGSGIIHQIILENYAF 225 (1087)
Q Consensus 150 ~~~~---~~g~~-~v~~p~~~~~DH~v~a~~~~~~d~~~~~~~n~e~~~fl~~~~~~~Gi~~~~pG~GIiHqv~lE~~~~ 225 (1087)
++++ ++|++ ++++||+||+ |+||++.|++ .|+++++|+..++ || ..+||+||||+| |++|.+
T Consensus 414 dElk~lAclgfsaD~vmQSfCHT-----Aaypkpvdv~----th~~Lp~Fi~~rG---gV-slrpgdGVIHsw-LNrmll 479 (852)
T COG1049 414 DELKDLACLGFSADLVMQSFCHT-----AAYPKPVDVK----THHTLPDFIMNRG---GV-SLRPGDGVIHSW-LNRMLL 479 (852)
T ss_pred HHHHHHHhhcccchhhhhhcccc-----cccCCccchh----ccccchHHHhhcC---ce-ecCCCCccHHHH-HHhccC
Confidence 8876 47998 8999999999 8999999986 6899999999887 55 899999999999 999999
Q ss_pred CCCeEecCCCCccCccccceeeccccHHHHHHHHhcCceEeecCcEEEEEEECcCCCCcchhHHHHHH------HHHhcc
Q psy3833 226 PGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKV------AGILTV 299 (1087)
Q Consensus 226 Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i------~g~L~~ 299 (1087)
||+|++|+||||+++-| ++||+|++.+|++.++|.|+|+|||+|+|||+|+||||||.||||++| .|+|++
T Consensus 480 pDtvgtGGDSHTRfpiG---isFpAgSGlVAfAaatGvmpldmPeSVlVrFkG~mQPgitlRDlV~Aip~yaikQglltv 556 (852)
T COG1049 480 PDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTV 556 (852)
T ss_pred CcceecCCccccccccc---ceecCCCchhhhhHhcCcccCCCCceEEEEeccccCCCcCHHHHHhhhHHHHHHhhheec
Confidence 99999999999999999 899999999999999999999999999999999999999999999999 788996
Q ss_pred c--Cc----ccEEEEEeCCcccccCccccccccccccccccccccccccc-hhhcccCCCccccccCCCccccccccccc
Q psy3833 300 K--GG----TGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNK-RINEYHGPGIDNISCTGMGTICNMGAEIG 372 (1087)
Q Consensus 300 ~--G~----~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~~-~v~~y~~~~~~~~~~~~~~~~~~~~~~~~ 372 (1087)
. |+ .|||+|++| +.+|.+||.|+++++||||||++|+|++++ +|+|||
T Consensus 557 ~k~~k~NiFsGRIlEieg--lp~LkveQAFeltDasAErsaa~ctikl~~e~iiEyL----------------------- 611 (852)
T COG1049 557 EKKGKKNIFSGRILEIEG--LPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYL----------------------- 611 (852)
T ss_pred cccCccceecceeEEecc--CcccchhhheeccchhhhhhhccceEecCchhHHHHH-----------------------
Confidence 3 32 799999999 999999999999999999999999999999 999999
Q ss_pred cccccccccccccccccccCCCCcccccccccCceeecccCcHHHHHHHHhcCChHHHHHHHHhhccCCCCCCCcccEEE
Q psy3833 373 ATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAKEAMKYQSLLTPDEGAKYDQLI 452 (1087)
Q Consensus 373 ~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL~~~~r~~~~~~~~~~~~~l~aD~dA~Y~~vi 452 (1087)
+|||.||+ |||..|++...| +-++.++|.+||++ +.+|++|.||+|+++|
T Consensus 612 ----------~sni~l~k-----~MIa~Gy~d~rT--L~rri~~me~wla~-------------p~lle~D~dAeYaavI 661 (852)
T COG1049 612 ----------KSNIVLLK-----WMIAEGYGDART--LERRIDKMEAWLAN-------------PELLEADADAEYAAVI 661 (852)
T ss_pred ----------HHHHHHHH-----HHHHhccccHHH--HHHHHHHHHHhhcC-------------ccccCCCCCCceeEEE
Confidence 89999999 999999985544 88999999999987 5689999999999999
Q ss_pred EEeCCCC-ccccccCCCCCccccccccchhhhhCCCccceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEe
Q psy3833 453 ELDLNTL-EPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVT 531 (1087)
Q Consensus 453 eiDLs~i-eP~vA~P~~Pd~v~~lse~~~~~~~~g~~~~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~ 531 (1087)
||||++| ||++||||||||++.+|++.++ +||+|||||||++ ++|+|+||++|+++ +...++|+||+
T Consensus 662 eidL~~IkEPila~PNdpDd~r~lse~~~~--------~idevFiGSCMtn-iGh~ra~~klL~~~---~~~~~~rLwva 729 (852)
T COG1049 662 EIDLADIKEPILAAPNDPDDVRLLSEVAGD--------KIDEVFIGSCMTN-IGHFRAAGKLLENA---KGELPTRLWVA 729 (852)
T ss_pred EeeHHHcCCCeecCCCCchHhhHhHHhcCC--------ccceeeeehhhcc-chhHHHHHHHHHhc---ccCCCcceEec
Confidence 9999999 9999999999999999999875 6999999999999 99999999999984 43577999999
Q ss_pred cCcHHHHHHHHHcChHHHHHhcCcEEecCCccccccCCCcccccCCcceeEEeecCCCCCCCCCCCCCcceeecCHHHHH
Q psy3833 532 PGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVT 611 (1087)
Q Consensus 532 PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~v~~g~~~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvA 611 (1087)
|+|+|+.+||.+||+|.+|.++|++++.|||++|||||.+ +++|. +++|||+|||+||||. ++++||+|+++||
T Consensus 730 pPTkmd~~qL~~EG~y~ifg~agar~E~PGCsLCMGNQar--v~dga--tV~sTSTRnF~nRlg~--~a~vyL~Saelaa 803 (852)
T COG1049 730 PPTKMDAAQLTEEGYYSIFGKAGARIEMPGCSLCMGNQAR--VADGA--TVFSTSTRNFPNRLGK--GANVYLASAELAA 803 (852)
T ss_pred CCccccHHHHhhcchHHHHhhccceecCCCcccccccHhh--hccCC--EEEeeccccCCccccc--ccceeeeccHHHH
Confidence 9999999999999999999999999999999999999987 76666 8999999999999995 5899999999999
Q ss_pred HHHHhCccc
Q psy3833 612 ALAIKGTLA 620 (1087)
Q Consensus 612 AsAiaG~I~ 620 (1087)
.+|+.|+|+
T Consensus 804 v~aiLGkiP 812 (852)
T COG1049 804 VCAILGKIP 812 (852)
T ss_pred HHHHHcCCC
Confidence 999999996
No 17
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=8.8e-118 Score=1056.56 Aligned_cols=498 Identities=25% Similarity=0.330 Sum_probs=440.0
Q ss_pred cCCeecceeccC-----------Ccccccc---------------ccCceeEEeecCCCCCcHHHhh----hccccccch
Q psy3833 28 MNGSYSPVSWNG-----------NVSTLEM---------------LNGSLDSSLACSPSSPCKEARA----KLVKPKSLV 77 (1087)
Q Consensus 28 ~~~~~~~~~~~~-----------~~~~~e~---------------~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~l~ 77 (1087)
.++||+|||||+ +|+.+++ ++|+++.+|++.|.++.|++|| |++|||+||
T Consensus 265 ia~sfArIFfrnain~Gl~~ie~~~~~l~~GD~i~Id~~~G~I~n~~g~~~~~f~~~p~~l~div~AGGli~~i~gr~l~ 344 (844)
T TIGR00117 265 LGGKIAPIFFNTMEDSGALPIEVDVSNLNMGDVIDIYPYKGEITNHEGELLATFELKPETLLDEVRAGGRIPLIIGRGLT 344 (844)
T ss_pred EeccChHhhhcchhhcCCCeEEeCHhhcCCCCEEEEECCCCEEEeCCCCEEEEeeeCCHHHHHHHHcCCchhhhhcccch
Confidence 457999999998 5565665 3577889999999999999999 999999999
Q ss_pred hhHHHhhCCCcccccccCChhHHHHHHHHHhhhcCCCCchhhhcc------ccccCCCceeccccccccccchhhHHHHH
Q psy3833 78 EKARLNVATEKSLYLSSLNKEEQYASWMAACRLASKGRTLADSSY------EAEQTGPHSRLRPDRVAMQDATAQMAMLQ 151 (1087)
Q Consensus 78 ~~~~~~l~~~~~l~~~~~~~eeq~a~wmaA~~la~kGkTLAdKg~------E~VrpGe~V~l~~d~v~~qD~Tg~~a~~~ 151 (1087)
+|||++||++.+..|+... +++ .+++|+||+||.. +.|+||++|++++|+|++||+||||++++
T Consensus 345 ~~~~~~l~~~~~~~f~~~~---~~~-------~~~mg~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~ 414 (844)
T TIGR00117 345 TKAREALGLPHSDVFRQPK---APA-------ESDKGFTLAQKMVGRACGVKGIRPGTYCEPKMTTVGSQDTTGPMTRDE 414 (844)
T ss_pred HHHHHHcCCChhhhccCCC---CCC-------cCCCchhHHHHHHHHhhCCCCCCCCCEEEEECcEEeeeccccHHHHHH
Confidence 9999999999777776443 233 2678999999944 46899999999999999999999999999
Q ss_pred HHHcCCCcccCCcee--eecccccccCCCchhHHHHhhhhHHHHHHHHHHHHhcCceecCCCCcceeeecccccccCCCe
Q psy3833 152 FISSGLPRVAVPSTI--HCDHLIEAQVGGVEDLKRAKSQNEEVYAFLRSAGAKYGVGFWHPGSGIIHQIILENYAFPGLL 229 (1087)
Q Consensus 152 ~~~~g~~~v~~p~~~--~~DH~v~a~~~~~~d~~~~~~~n~e~~~fl~~~~~~~Gi~~~~pG~GIiHqv~lE~~~~Pg~~ 229 (1087)
|+++|. +++.|+.+ .+||++|+. ++.+ .+.|+++++|++++|+.+++||+|||||| ++++++||++
T Consensus 415 ~~~l~~-~vfdpd~v~~~~DH~~p~~--~~~~--------a~~~~~lr~Fa~~~Gi~~~~pG~GI~Hqv-l~e~~~PG~v 482 (844)
T TIGR00117 415 LKELAC-LGFSADLVLQSFCHTAAYP--KPVD--------VNTHHTLPDFIMNRGGVALRPGDGVIHSW-LNRMLLPDTV 482 (844)
T ss_pred HHHhCC-ceECCCcEEEEeCCCCCCC--CHHH--------HHHHHHHHHHHHHcCCeEECCCCceeccc-chhhccCCee
Confidence 999987 78888865 699998653 2222 24688999999999999999999999999 5668999999
Q ss_pred EecCCCCccCccccceeeccccHHHHHHHHhcCceEeecCcEEEEEEECcCCCCcchhHHHHHH----H--HHhcc----
Q psy3833 230 MIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKV----A--GILTV---- 299 (1087)
Q Consensus 230 ~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i----~--g~L~~---- 299 (1087)
++||||||||+ +| ||||+|++|++++|++|.+||+|||+|+|+|+|+|++|||+|||||+| + |.|++
T Consensus 483 ivG~DSHT~t~--~G-~a~G~Gs~dvA~a~atG~~~l~vPesV~V~l~G~L~~gVtaKDliL~I~~~~i~~G~ltv~k~g 559 (844)
T TIGR00117 483 GTGGDSHTRFP--LG-ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVNAIPLYAIKQGLLTVEKKG 559 (844)
T ss_pred EEecccccccc--ce-EEecccHHHHHHHHHhCeeeEeCCCEEEEEEeccCCCCcChhhHHHHHHHHHHhcCeeeccccc
Confidence 99999999998 45 999999999999999999999999999999999999999999999999 4 77777
Q ss_pred --cCcccEEEEEeCCcccccCccccccccccccccccccccccccc-hhhcccCCCccccccCCCccccccccccccccc
Q psy3833 300 --KGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNK-RINEYHGPGIDNISCTGMGTICNMGAEIGATTS 376 (1087)
Q Consensus 300 --~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~~-~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (1087)
+|++|++|||+| +++||+++|||||||++|+||++|+|++|+ ++.+||
T Consensus 560 ~~ng~~gk~lEf~G--i~~Lsve~R~Ti~NMaaE~GA~~gii~~D~e~t~eYL--------------------------- 610 (844)
T TIGR00117 560 KKNVFNGRILEIEG--LPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYL--------------------------- 610 (844)
T ss_pred ccccccceEEEECC--cccCCHhHHHHHhhhhhhhCceEEEeccChHHHHHHH---------------------------
Confidence 346999999986 999999999999999999999999999997 799999
Q ss_pred cccccccccccccccCCCCcccccccccCceeecccCcHHHHHHHHhcCChHHHHHHHHhhccCCCCCCCcccEEEEEeC
Q psy3833 377 VFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAKEAMKYQSLLTPDEGAKYDQLIELDL 456 (1087)
Q Consensus 377 ~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL~~~~r~~~~~~~~~~~~~l~aD~dA~Y~~vieiDL 456 (1087)
|+|+.||+ |||+.+++.-.| +-..++.+.+|+++ +.+|++|+||+|+++|||||
T Consensus 611 ------k~~~~~~~-----~mi~~G~~~~~~--~~~~~~~~e~w~~~-------------~~ll~aD~dA~Y~~vieIDL 664 (844)
T TIGR00117 611 ------NSNIVLLK-----WMIAEGYGDRRT--LERRIQGMEKWLAN-------------PELLEADADAEYAAVIEIDL 664 (844)
T ss_pred ------HhCccccc-----cccccCCcchhh--hhHHHHHHHHHHhh-------------cccccCCCCCceEEEEEEEh
Confidence 77888888 888877654322 44456777788754 24789999999999999999
Q ss_pred CCC-ccccccCCCCCccccccccchhhhhCCCccceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEecCcH
Q psy3833 457 NTL-EPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSE 535 (1087)
Q Consensus 457 s~i-eP~vA~P~~Pd~v~~lse~~~~~~~~g~~~~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS~ 535 (1087)
|+| ||+||||++|||++||+|+++. +||+||||||| ++++||++||+|||+ +++.+ +|+||+|||+
T Consensus 665 s~i~EP~VA~P~~PDnv~pvsev~g~--------~IdqVfIGSCT-~n~~DlraAA~ILkg---~~v~~-vrl~V~P~S~ 731 (844)
T TIGR00117 665 AEIKEPILAAPNDPDDVRPLSEVQGD--------KIDEVFIGSCM-TNIGHFRAAGKILDA---AGQLP-TRLWVAPPTR 731 (844)
T ss_pred HhCCCCeeCCCCChhhccChHhhcCc--------ccceEEEEcCC-CCHHHHHHHHHHHcC---CCcCC-CCEEEECCCH
Confidence 999 9999999999999999999864 69999999999 679999999999997 46655 9999999999
Q ss_pred HHHHHHHHcChHHHHHhcCcEEecCCccccccCCCcccccCCcceeEEeecCCCCCCCCCCCCCcceeecCHHHHHHHHH
Q psy3833 536 QIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAI 615 (1087)
Q Consensus 536 ~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~v~~g~~~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvAAsAi 615 (1087)
+|+++|+++|++++|.+|||+|..||||+||||+++ +.+|+ +|+|||||||+||||. ++++||+||++|||+|+
T Consensus 732 ~V~~~l~~eG~~~~f~~AGa~i~~pGCg~C~Gn~~~--v~~Ge--~vvSTsNRNF~GRmG~--~a~vYLaSP~~aAAsAi 805 (844)
T TIGR00117 732 MDEQQLTEEGYYSIFGAAGARTEIPGCSLCMGNQAR--VADGA--TVFSTSTRNFPNRMGT--GANVYLGSAELAAVCAL 805 (844)
T ss_pred HHHHHHHHcCcHHHHHHcCCEECCCccccccCCCCc--CCCCC--EEEeccCCCCCCCCCC--CccEEeCCHHHHHHHHh
Confidence 999999999999999999999999999999999765 66665 7999999999999994 68999999999999999
Q ss_pred hCccccCCCC
Q psy3833 616 KGTLAFDPRS 625 (1087)
Q Consensus 616 aG~I~fdp~~ 625 (1087)
+|+|+ ||+.
T Consensus 806 ~G~I~-dp~e 814 (844)
T TIGR00117 806 LGKIP-TPEE 814 (844)
T ss_pred CcccC-CHHH
Confidence 99998 8853
No 18
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=1.1e-117 Score=1058.66 Aligned_cols=500 Identities=23% Similarity=0.290 Sum_probs=442.9
Q ss_pred ccCCeecceeccC-----------Ccccccc---------------ccCceeEEeecCCCCCcHHHhh----hccccccc
Q psy3833 27 EMNGSYSPVSWNG-----------NVSTLEM---------------LNGSLDSSLACSPSSPCKEARA----KLVKPKSL 76 (1087)
Q Consensus 27 ~~~~~~~~~~~~~-----------~~~~~e~---------------~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~l 76 (1087)
-.++||+|||||. ++..+++ .+|+++.+|+++|+++.|++|| |++|||+|
T Consensus 263 VIa~SfArIFf~Nain~GlLpIe~d~~~i~~Gd~i~Id~~~g~I~~~~g~~~~~f~l~p~~~~div~AGGli~~i~gr~l 342 (835)
T PRK09238 263 VLGGKIAPIFFNTMEDSGALPIELDVSKLNMGDVIDIYPYKGKIRNETGEVIATFKLKTDVLLDEVRAGGRIPLIIGRGL 342 (835)
T ss_pred EEeCchHHHHHhhhHHcCCceEEeCHHHcCCCCEEEEECCCCEEEeCCCeEEEEEecCcHHHHHHHHcCChHHHHHhccc
Confidence 3567999999987 3343443 3567779999999999999999 99999999
Q ss_pred hhhHHHhhCCCcccccccCChhHHHHHHHHHhhhcCCCCchhhhcc------ccccCCCceeccccccccccchhhHHHH
Q psy3833 77 VEKARLNVATEKSLYLSSLNKEEQYASWMAACRLASKGRTLADSSY------EAEQTGPHSRLRPDRVAMQDATAQMAML 150 (1087)
Q Consensus 77 ~~~~~~~l~~~~~l~~~~~~~eeq~a~wmaA~~la~kGkTLAdKg~------E~VrpGe~V~l~~d~v~~qD~Tg~~a~~ 150 (1087)
|+|||++||++.+..|+... +++ .+++|+||+||.. +.|+||++|++++|+|++||+||||+++
T Consensus 343 ~~~a~~~lg~~~~~~f~~~~---~~~-------~~~~g~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~ 412 (835)
T PRK09238 343 TTKAREALGLPPSDVFRKPK---QPA-------DSGKGFTLAQKMVGRACGVPGVRPGTYCEPKMTTVGSQDTTGPMTRD 412 (835)
T ss_pred HHHHHHHcCCCchhhcCCCC---CCC-------cCCCcccHHHHHHHHhcCCCCCCCCCEEEEECCEEEeeccchHHHHH
Confidence 99999999999777776443 232 2689999999944 5689999999999999999999999999
Q ss_pred HHHHcCCCcccCCcee--eecccccccCCCchhHHHHhhhhHHHHHHHHHHHHhcCceecCCCCcceeeecccccccCCC
Q psy3833 151 QFISSGLPRVAVPSTI--HCDHLIEAQVGGVEDLKRAKSQNEEVYAFLRSAGAKYGVGFWHPGSGIIHQIILENYAFPGL 228 (1087)
Q Consensus 151 ~~~~~g~~~v~~p~~~--~~DH~v~a~~~~~~d~~~~~~~n~e~~~fl~~~~~~~Gi~~~~pG~GIiHqv~lE~~~~Pg~ 228 (1087)
+|+++|. +++.|+.+ .+||++|+. +.+ +.+.|+++++|++++|+.+++||+|||||| +++|++||+
T Consensus 413 ~~~~lg~-~~~~~d~v~~~~dH~~p~~-----~~~-----~a~~~~~lr~Fa~~~Gi~~~~pG~GI~H~v-l~~~~~Pg~ 480 (835)
T PRK09238 413 ELKDLAC-LGFSADLVMQSFCHTAAYP-----KPV-----DVKTHHTLPDFIMNRGGVSLRPGDGVIHSW-LNRMLLPDT 480 (835)
T ss_pred HHHHcCC-cccCCCcEEEEccCCCCCC-----CHH-----HHHHHHHHHHHHHHcCCcEeCCCCCeeeec-ccccccCCe
Confidence 9999988 78888865 699998753 222 346788999999999999999999999999 578999999
Q ss_pred eEecCCCCccCccccceeeccccHHHHHHHHhcCceEeecCcEEEEEEECcCCCCcchhHHHHHH----HHH--hcc---
Q psy3833 229 LMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKV----AGI--LTV--- 299 (1087)
Q Consensus 229 ~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i----~g~--L~~--- 299 (1087)
+++|+||||||+|| ||||+|++|++++|++|.+||+|||+|+|+|+|+|++|||+|||||+| ++. ||+
T Consensus 481 vivG~DSHT~t~ga---~a~G~Gs~~vA~a~atG~~~l~vPesv~V~l~G~L~~gVtaKDviL~I~~~~i~~g~ltv~~~ 557 (835)
T PRK09238 481 VGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKK 557 (835)
T ss_pred EEEecccccCCCCc---eEeccchHHHHHHHhhCceEEeCCCEEEEEEecccCCCcCHhHHHHHHHHHHHhccccccccc
Confidence 99999999999998 899999999999999999999999999999999999999999999999 553 444
Q ss_pred ---cCcccEEEEEeCCcccccCccccccccccccccccccccccccc-hhhcccCCCccccccCCCcccccccccccccc
Q psy3833 300 ---KGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNK-RINEYHGPGIDNISCTGMGTICNMGAEIGATT 375 (1087)
Q Consensus 300 ---~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~~-~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (1087)
+|++||+|||.| +++||+++|||||||++|+||++|+|++++ ++.+||
T Consensus 558 ~g~~~~~gr~lEf~G--v~~Lsve~R~Tl~NMa~E~GA~~~i~~~~de~t~eYL-------------------------- 609 (835)
T PRK09238 558 GKKNIFSGRILEIEG--LPDLKVEQAFELTDASAERSAAGCTIKLSKEPIIEYL-------------------------- 609 (835)
T ss_pred CCccceeeeEEEEcC--cccCCHHHHHhHhhccHhhCceeceecCChHHHHHHH--------------------------
Confidence 446899999976 999999999999999999999999999665 899999
Q ss_pred ccccccccccccccccCCCCcccccccccCceeecccCcHHHHHHHHhcCChHHHHHHHHhhccCCCCCCCcccEEEEEe
Q psy3833 376 SVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAKEAMKYQSLLTPDEGAKYDQLIELD 455 (1087)
Q Consensus 376 ~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL~~~~r~~~~~~~~~~~~~l~aD~dA~Y~~vieiD 455 (1087)
|+|+.||+ |||+.+++.-.+ +-.+.+.+++|+++ +.+|++|+||+|+++||||
T Consensus 610 -------~~~~~~~~-----~mi~~g~~~~~~--~~~r~~~~~~w~~~-------------~~ll~aD~dA~Y~~vieID 662 (835)
T PRK09238 610 -------RSNIVLLK-----WMIAEGYGDART--LERRIAAMEEWLAN-------------PELLEADADAEYAAVIEID 662 (835)
T ss_pred -------Hhcccccc-----cccccCcccccc--hhHHHHHHHHHHhh-------------cccccCCCCCceEEEEEEE
Confidence 78888888 888888654444 34456677888864 3478999999999999999
Q ss_pred CCCC-ccccccCCCCCccccccccchhhhhCCCccceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEecCc
Q psy3833 456 LNTL-EPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGS 534 (1087)
Q Consensus 456 Ls~i-eP~vA~P~~Pd~v~~lse~~~~~~~~g~~~~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS 534 (1087)
||+| ||+||||++|||++||+|+++. +||+||||||| ++++||++||+|||+ +++++++|+||+|||
T Consensus 663 Ls~i~eP~VA~P~~Pdnv~~lsev~g~--------~Id~vfIGSCT-gr~~DlraAA~ILkg---~~v~~~vr~~V~P~S 730 (835)
T PRK09238 663 LAEIKEPILACPNDPDDVRLLSEVAGT--------KIDEVFIGSCM-TNIGHFRAAGKLLEG---KKGQLPTRLWVAPPT 730 (835)
T ss_pred hhhcCCCeecCCCChhhheEHHHhcCC--------ccCeEEEEcCC-CCHHHHHHHHHHHcC---CccCCCCCEEEECCC
Confidence 9999 9999999999999999999874 79999999999 999999999999997 568889999999999
Q ss_pred HHHHHHHHHcChHHHHHhcCcEEecCCccccccCCCcccccCCcceeEEeecCCCCCCCCCCCCCcceeecCHHHHHHHH
Q psy3833 535 EQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALA 614 (1087)
Q Consensus 535 ~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~v~~g~~~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvAAsA 614 (1087)
++|+++|+++|++++|.+|||+|++||||+||||+++ +.+|+ ++||||||||+||||. ++++||+||++|||+|
T Consensus 731 ~~v~~~l~~eG~~~~l~~AGa~v~~pGCg~C~G~~~~--~~~ge--~~vSTsNRNF~GRmG~--~a~vYLaSP~~aAAsA 804 (835)
T PRK09238 731 KMDADQLTEEGYYSIFGKAGARIEMPGCSLCMGNQAR--VADGA--TVFSTSTRNFPNRLGK--GANVYLGSAELAAVCA 804 (835)
T ss_pred HHHHHHHHHcCcHHHHHHcCCEECCCcchhhhCccCc--CCCCC--EEEeecCCCCCCCCCC--CCCeEeCCHHHHHHHH
Confidence 9999999999999999999999999999999999764 66666 7999999999999984 6899999999999999
Q ss_pred HhCccccCCCC
Q psy3833 615 IKGTLAFDPRS 625 (1087)
Q Consensus 615 iaG~I~fdp~~ 625 (1087)
++|+|+ ||+.
T Consensus 805 i~G~I~-~p~e 814 (835)
T PRK09238 805 LLGRIP-TVEE 814 (835)
T ss_pred hCCccC-CHHH
Confidence 999998 7753
No 19
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=1.3e-117 Score=1051.96 Aligned_cols=499 Identities=24% Similarity=0.314 Sum_probs=440.6
Q ss_pred cCCeecceeccC-----------Ccccccc----------------ccCceeEEeecCCCCCcHHHhh----hccccccc
Q psy3833 28 MNGSYSPVSWNG-----------NVSTLEM----------------LNGSLDSSLACSPSSPCKEARA----KLVKPKSL 76 (1087)
Q Consensus 28 ~~~~~~~~~~~~-----------~~~~~e~----------------~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~l 76 (1087)
.+++|+|||||+ +|+.+++ .+|+++++|++.|+++.|++|| |+++||+|
T Consensus 336 ia~sfArIFfrnain~G~~~Ie~~v~~i~~GD~I~id~~~G~I~n~~~g~~~~~f~~~p~~l~d~vrAGGli~~i~gr~l 415 (938)
T PLN00094 336 IGGKIAPIFFNTMEDSGALPIEMDVKNLNMGDVIDIYPYEGVVKRHGTDEVITTFSLKTPVLLDEVRAGGRIPLIIGRGL 415 (938)
T ss_pred eeceecHHHhhchhhcCCceEeccHhhcCCCCEEEEEcCCCEEEecCCCeEEEeccCCChHHHHHHHcCCcHhhhhcccc
Confidence 788999999998 5565655 2689999999999999999999 99999999
Q ss_pred hhhHHHhhCCCcccccccCChhHHHHHHHHHhhhcCCCCchhhhcc-------ccccCCCceeccccccccccchhhHHH
Q psy3833 77 VEKARLNVATEKSLYLSSLNKEEQYASWMAACRLASKGRTLADSSY-------EAEQTGPHSRLRPDRVAMQDATAQMAM 149 (1087)
Q Consensus 77 ~~~~~~~l~~~~~l~~~~~~~eeq~a~wmaA~~la~kGkTLAdKg~-------E~VrpGe~V~l~~d~v~~qD~Tg~~a~ 149 (1087)
|+|||++||++.+..|+... +++ ..++|+||+||.. +.|+||++|++++|+|++||+||||++
T Consensus 416 t~~ar~~lg~~~~~~f~~p~---~~~-------~~~mG~TlaEKIl~~a~G~~~~V~pGe~v~~~vD~v~sqD~TGPmt~ 485 (938)
T PLN00094 416 TSKAREALGLDASDVFRMPS---VPE-------SKPKGFTLAQKMVGKACGVDEGILPGTYCEPRMTTVGSQDTTGPMTR 485 (938)
T ss_pred hHHHHHHcCCCchhhccCCC---CCC-------cCCCchhHHHHHHHHHhCCCCCCCCCCEEEEECcEEeeeccccHHHH
Confidence 99999999999777776443 222 2689999999944 348999999999999999999999999
Q ss_pred HHHHHcCCCcccCCcee--eecccccccCCCchhHHHHhhhhHHHHHHHHHHHHhcCceecCCCCcceeeecccccccCC
Q psy3833 150 LQFISSGLPRVAVPSTI--HCDHLIEAQVGGVEDLKRAKSQNEEVYAFLRSAGAKYGVGFWHPGSGIIHQIILENYAFPG 227 (1087)
Q Consensus 150 ~~~~~~g~~~v~~p~~~--~~DH~v~a~~~~~~d~~~~~~~n~e~~~fl~~~~~~~Gi~~~~pG~GIiHqv~lE~~~~Pg 227 (1087)
++|+++|.. .+.|+.+ .+||.+++ +++.+. ..++.+++|++++|+.|++||+||||||+ ++|++||
T Consensus 486 ~efkel~~~-~~dpdkv~~~fDH~ap~--p~~~~~--------~~~~~lr~Fa~~~Gi~~~~~G~GI~HqvL-~e~~lPG 553 (938)
T PLN00094 486 DELKDLACL-GFSADLVMQSFCHTAAY--PKPVDV--------VTHHTLPDFIRNRGGVSLRPGDGVIHSWL-NRMLLPD 553 (938)
T ss_pred HHHHHhccc-ccCcccEEEEccCCCCC--CCHHHH--------HHHHHHHHHHHHcCCEEECCCCceecccc-cccccCC
Confidence 999997763 5577665 78999654 333332 34558888888999999999999999994 5699999
Q ss_pred CeEecCCCCccCccccceeeccccHHHHHHHHhcCceEeecCcEEEEEEECcCCCCcchhHHHHHHH------HHhccc-
Q psy3833 228 LLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVA------GILTVK- 300 (1087)
Q Consensus 228 ~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i~------g~L~~~- 300 (1087)
++++|+|||||+++| ++||+|++|+|++|++|++||+|||+|+|+|+|+|++|||+|||||+|+ |+|++.
T Consensus 554 ~vivGgDSHT~fa~G---Isf~aGsgdvA~a~ATG~~wlkvPEsV~V~l~G~L~~gVtaKDlIL~Ii~~~i~~G~Ltv~k 630 (938)
T PLN00094 554 TVGTGGDSHTRFPIG---ISFPAGSGLVAFGAATGVIPLDMPESVLVRFTGTMQPGITLRDLVHAIPYTAIQDGLLTVEK 630 (938)
T ss_pred eEEEeecCCCCCccc---ccCCCcHHHHHHHHHhCeehhcCCCEEEEEEecccCCCcCHhHHHHHHHHHhhhccccchhh
Confidence 999999999999999 6889999999999999999999999999999999999999999999995 888873
Q ss_pred -C----cccEEEEEeCCcccccCccccccccccccccccccccccccc-hhhcccCCCccccccCCCccccccccccccc
Q psy3833 301 -G----GTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNK-RINEYHGPGIDNISCTGMGTICNMGAEIGAT 374 (1087)
Q Consensus 301 -G----~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~~-~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (1087)
| ++||+|||.| +++||+++|||||||++|+||++|+|++|+ ++.|||
T Consensus 631 ~gk~~~f~GkilEf~G--l~~Lsve~R~TL~NMaaE~GAk~gii~~Dde~t~eYL------------------------- 683 (938)
T PLN00094 631 KGKKNVFSGRILEIEG--LPHLKCEQAFELSDASAERSAAGCTIKLDKEPIIEYL------------------------- 683 (938)
T ss_pred cCccceEeeEEEEeCC--cccCCHhHHHHHHhHHHHhCccEEEECCChhHHHHHH-------------------------
Confidence 3 3899999965 999999999999999999999999999996 899999
Q ss_pred cccccccccccccccccCCCCcccccccccCceeecccCcHHHHHHHHhcCChHHHHHHHHhhccCCCCCCCcccEEEEE
Q psy3833 375 TSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAKEAMKYQSLLTPDEGAKYDQLIEL 454 (1087)
Q Consensus 375 ~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL~~~~r~~~~~~~~~~~~~l~aD~dA~Y~~viei 454 (1087)
++||.||+ ||+..+++...+ +-.+.+.+++|+++ +.+|++|+||+|+++|||
T Consensus 684 --------~~n~~~~~-----~mi~~g~~~~rt--~~~ri~~~e~w~~~-------------~~ll~aD~dA~Y~~vieI 735 (938)
T PLN00094 684 --------NSNVVMLK-----WMIAEGYGDRRT--LERRIARMQQWLAD-------------PELLEADPDAEYAAVIEI 735 (938)
T ss_pred --------hhcccchh-----hhhccCCCchhh--HHHHHHHHHHHHhh-------------cccccCCCCCceEEEEEE
Confidence 88999999 888887765532 33344567777754 347899999999999999
Q ss_pred eCCCC-ccccccCCCCCccccccccchhhhhCCCccceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEecC
Q psy3833 455 DLNTL-EPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPG 533 (1087)
Q Consensus 455 DLs~i-eP~vA~P~~Pd~v~~lse~~~~~~~~g~~~~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~Pg 533 (1087)
|||+| ||+||+|++|||++||+|+.+. +||+||||||| ++++||++||+|||+ +++++++|+||+|+
T Consensus 736 DLs~I~EP~VA~P~~PDnv~~lsev~g~--------kIDqVFIGSCT-grieDlraAA~ILkG---rkv~~~Vrl~V~P~ 803 (938)
T PLN00094 736 DMDEIKEPILCAPNDPDDARLLSEVTGD--------KIDEVFIGSCM-TNIGHFRAAGKLLND---NLSQLPTRLWVAPP 803 (938)
T ss_pred EhHHCCCCeEeCCCChhhceECchhcCC--------ccCeEEEEeCC-CCHHHHHHHHHHHcC---CCCCCCCcEEEeCC
Confidence 99999 9999999999999999999863 79999999999 679999999999997 67889999999999
Q ss_pred cHHHHHHHHHcChHHHHHhcCcEEecCCccccccCCCcccccCCcceeEEeecCCCCCCCCCCCCCcceeecCHHHHHHH
Q psy3833 534 SEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTAL 613 (1087)
Q Consensus 534 S~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~v~~g~~~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvAAs 613 (1087)
|++|+++|+++|++++|.+|||+|+.||||+||||+++ +.+|+ ++||||||||+||||. ++++||+||++|||+
T Consensus 804 Sr~V~~ql~~eG~~~if~~AGA~i~~PGCg~CmG~~g~--l~~Ge--v~vSTSNRNF~GRmG~--~a~VYLaSP~~AAAS 877 (938)
T PLN00094 804 TKMDEAQLKAEGYYSTFGTVGARTEMPGCSLCMGNQAR--VAEKS--TVVSTSTRNFPNRLGK--GANVYLASAELAAVA 877 (938)
T ss_pred CHHHHHHHHHcCcHHHHHhCCCEEcCCccccccCCCCc--CCCCC--eEEeecCCCCCCCCCC--CccEEecCHHHHHHH
Confidence 99999999999999999999999999999999999765 66666 7999999999999994 689999999999999
Q ss_pred HHhCccccCCCC
Q psy3833 614 AIKGTLAFDPRS 625 (1087)
Q Consensus 614 AiaG~I~fdp~~ 625 (1087)
|++|+|+ ||+.
T Consensus 878 Ai~G~It-dpre 888 (938)
T PLN00094 878 AILGRLP-TVEE 888 (938)
T ss_pred HhCCccC-CHHH
Confidence 9999998 7753
No 20
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=4e-113 Score=969.31 Aligned_cols=394 Identities=32% Similarity=0.531 Sum_probs=372.3
Q ss_pred ccCCCceeccccccccccchhhHHHHHHHHcCCCcccCCcee--eecccccccCCCchhHHHHhhhhHHHHHHHHHHHHh
Q psy3833 125 EQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTI--HCDHLIEAQVGGVEDLKRAKSQNEEVYAFLRSAGAK 202 (1087)
Q Consensus 125 VrpGe~V~l~~d~v~~qD~Tg~~a~~~~~~~g~~~v~~p~~~--~~DH~v~a~~~~~~d~~~~~~~n~e~~~fl~~~~~~ 202 (1087)
+++|+++.+++|++++||.|+|+++.+|+++|..++++|+++ ++||++|+.. .+ +.+.++++|+|+++
T Consensus 15 v~~G~~v~~~vD~~~~hD~t~p~a~~~~~~~g~~~v~~P~~v~~~~DH~~p~~~-----~~-----~a~~~~~~r~fa~~ 84 (412)
T TIGR01343 15 VYAGDLIVAEIDQAMVHDITAPLAIRRLEEYGIDKVFDPERIVIVVDHVVPAST-----IK-----AAEMQKLAREFVKK 84 (412)
T ss_pred cCCCCEEEEECCEEEEecccHHHHHHHHHHcCCCcCCCCCcEEEEcCCCCCCCC-----hh-----HHHHHHHHHHHHHH
Confidence 789999999999999999999999999999998899999765 6999998743 32 45778999999999
Q ss_pred cCce-ecCCCCcceeeecccc-cccCCCeEecCCCCccCccccceeeccccHHHHHHHHhcCceEeecCcEEEEEEECcC
Q psy3833 203 YGVG-FWHPGSGIIHQIILEN-YAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGL 280 (1087)
Q Consensus 203 ~Gi~-~~~pG~GIiHqv~lE~-~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g~~~l~vPe~V~V~l~G~l 280 (1087)
|||. |++||+|||||+++|+ +++||++++|+||||||+||||+||||||++|++.+|++|++||++||+|+|+|+|+|
T Consensus 85 ~gi~~~~~~g~GI~H~v~~E~g~~~PG~~iig~DSHT~t~GalGa~a~GvG~td~a~~~atg~~w~~vPe~i~v~l~G~l 164 (412)
T TIGR01343 85 TGIKHFFDVGEGICHQVLPEEGLVKPGDLVVGADSHTCTYGALGAFATGMGSTDIAYAIATGKTWFRVPESMKVTLTGKL 164 (412)
T ss_pred cCCceeecCCCCEEEEEchhhCcCCCCcEEEecCCCcCCcCchhheeecccHHHHHHHHhcCcEeecCCcEEEEEEEccc
Confidence 9996 9999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhHHHHHHHHHhcccCcccEEEEEeCCcccccCccccccccccccccccccccccccchhhcccCCCccccccCC
Q psy3833 281 KGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTG 360 (1087)
Q Consensus 281 ~~gVt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~~~v~~y~~~~~~~~~~~~ 360 (1087)
++||++|||||+|++.|+++|++|++|||+|||+++||+++|+|||||
T Consensus 165 ~~gV~akDviL~li~~~g~~g~~~~~vEf~G~~i~~Ls~~~R~ti~NM-------------------------------- 212 (412)
T TIGR01343 165 NPGVTAKDVILEVIGQIGVDGATYMAMEFHGETIKNMTMEERMTLANM-------------------------------- 212 (412)
T ss_pred CCCcCHHHHHHHHHHHhCcCCcceEEEEEECCcccccCHHHHhhhhcc--------------------------------
Confidence 999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccccccccccccccccccccccCCCCcccccccccCceeecccCcHHHHHHHHhcCChHHHHHHHHhhccC
Q psy3833 361 MGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAKEAMKYQSLL 440 (1087)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL~~~~r~~~~~~~~~~~~~l 440 (1087)
++|+||++++||+|++|++||+.++|++ +..+
T Consensus 213 ----------------------------------------a~E~GA~~~i~~~De~t~~yl~~~~~~~--------~~~~ 244 (412)
T TIGR01343 213 ----------------------------------------AIEAGGKTGIIEPDEKTRAYLKERYKEP--------FRVY 244 (412)
T ss_pred ----------------------------------------ccccCceeeEecCcHHHHHHHHhhCccc--------cccc
Confidence 8999999999999999999999987642 3468
Q ss_pred CCCCCCcccEEEEEeCCCCccccccCCCCCccccccccchhhhhCCCccceeEEEEeccCCCChHHHHHHHHHHHHhHhC
Q psy3833 441 TPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAH 520 (1087)
Q Consensus 441 ~aD~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~~g~~~~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~ 520 (1087)
.+|+||.|+++|+||||+|||+||+|++|||++||+|+.+. +||+||||||||+|++||++||+|||+ +
T Consensus 245 ~~D~da~Y~~~i~iDls~leP~va~P~~Pdnv~~v~~~~g~--------~id~~~IGSCTngr~~Dl~~aA~il~G---~ 313 (412)
T TIGR01343 245 KSDEDAEYAKEVEIDASQLEPVVAAPHNVDNVHPVSEVEGI--------EVDQVFIGSCTNGRIEDLRVAAKILKG---R 313 (412)
T ss_pred CCCCCCCEEEEEEEEcccceeeEecCCCCCcEEEhHHhCCC--------eeeEEEEecCCCCChHHHHHHHHHHcC---C
Confidence 99999999999999999999999999999999999999863 699999999999999999999999997 7
Q ss_pred CCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCccccccCCCcccccCCcceeEEeecCCCCCCCCCCCCCc
Q psy3833 521 GLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPAT 600 (1087)
Q Consensus 521 ~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~v~~g~~~~~vsT~NRNF~gR~G~~p~~ 600 (1087)
++++.||++|+|+|++|+++|+++|++++|.++||+|.+||||+|+|++.+ .+.+|+ ++|||+||||+|||| ++.+
T Consensus 314 kv~~~v~~~v~P~S~~V~~~~~~~G~~~~l~~aG~~i~~pgCg~C~G~~~g-~l~~ge--~~vsT~NRNF~GR~G-~~~~ 389 (412)
T TIGR01343 314 KVAPDVRLIVIPASRAVYLQALKEGLIEIFVKAGAVVSTPGCGPCLGRHQG-VLAPGE--VCISTSNRNFKGRMG-DPNA 389 (412)
T ss_pred CCCCCCCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCC-cCCCCC--EEEEecCCCCCCCCC-CCCC
Confidence 899999999999999999999999999999999999999999999999764 466666 789999999999998 5678
Q ss_pred ceeecCHHHHHHHHHhCccccCCC
Q psy3833 601 HAFVTSPELVTALAIKGTLAFDPR 624 (1087)
Q Consensus 601 ~~yLaSp~lvAAsAiaG~I~fdp~ 624 (1087)
++|||||++|||+||+|+|+ ||+
T Consensus 390 ~~yLaSP~~vaAsAi~G~it-dpr 412 (412)
T TIGR01343 390 EIYLASPATAAASAVKGRIA-DPR 412 (412)
T ss_pred cEEECCHHHHHHHHhCcccC-CCC
Confidence 99999999999999999998 884
No 21
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=7.4e-113 Score=968.56 Aligned_cols=407 Identities=32% Similarity=0.527 Sum_probs=380.6
Q ss_pred CCCchhhhccc-----cccCCCceeccccccccccchhhHHHHHHHHcCCCcccCCcee--eecccccccCCCchhHHHH
Q psy3833 113 KGRTLADSSYE-----AEQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTI--HCDHLIEAQVGGVEDLKRA 185 (1087)
Q Consensus 113 kGkTLAdKg~E-----~VrpGe~V~l~~d~v~~qD~Tg~~a~~~~~~~g~~~v~~p~~~--~~DH~v~a~~~~~~d~~~~ 185 (1087)
+|+||++|.+. .+++|+++.+++|++++||.|+|+++.+|+++|..++++|+++ ++||++|+.. .
T Consensus 1 m~~Tl~eKIl~~h~~~~v~~G~~v~v~vD~~~~hD~t~p~a~~~~~~~g~~~v~~P~~~~~~~DH~~p~~~-----~--- 72 (418)
T PRK00402 1 MGMTLAEKILARHSGRDVSPGDIVEAKVDLVMAHDITGPLAIKEFEKIGGDKVFDPSKIVIVFDHFVPAKD-----I--- 72 (418)
T ss_pred CCcCHHHHHHHHhcCCCCCCCCEEEEECCEEEEecccHHHHHHHHHHcCCCccCCCCcEEEECCCCCCCCC-----h---
Confidence 36899999763 2579999999999999999999999999999998899999764 8999999753 2
Q ss_pred hhhhHHHHHHHHHHHHhcCce-ecCCCCcceeeecccc-cccCCCeEecCCCCccCccccceeeccccHHHHHHHHhcCc
Q psy3833 186 KSQNEEVYAFLRSAGAKYGVG-FWHPGSGIIHQIILEN-YAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIP 263 (1087)
Q Consensus 186 ~~~n~e~~~fl~~~~~~~Gi~-~~~pG~GIiHqv~lE~-~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g~ 263 (1087)
.+.+.++++++|+++|||. |++||+|||||+++|+ +++||++++|+||||||+||||+||||||++|++.+|++|+
T Consensus 73 --~~a~~~~~~r~fa~~~gi~~~~~~g~GI~H~v~~E~g~~~PG~~ivg~DSHT~t~GalG~~a~GvG~td~~~~l~tg~ 150 (418)
T PRK00402 73 --KSAEQQKILREFAKEQGIPNFFDVGEGICHQVLPEKGLVRPGDVVVGADSHTCTYGALGAFATGMGSTDMAAAMATGK 150 (418)
T ss_pred --hhHHHHHHHHHHHHHcCCcceeCCCCCEeeEehhhcCccCCCcEEEeCCCCccccCccceEEecccHHHHHHHHhcCc
Confidence 2456789999999999997 9999999999999999 99999999999999999999999999999999999999999
Q ss_pred eEeecCcEEEEEEECcCCCCcchhHHHHHHHHHhcccCcccEEEEEeCCcccccCccccccccccccccccccccccccc
Q psy3833 264 WELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNK 343 (1087)
Q Consensus 264 ~~l~vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~~ 343 (1087)
+|+++||+|+|+|+|+|++||++|||||+|++.|+++|++|++|||+|+|+++||+++|||||||
T Consensus 151 ~~~~vPe~v~V~l~G~l~~gV~akDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NM--------------- 215 (418)
T PRK00402 151 TWFKVPETIKVVLEGKLPPGVTAKDVILHIIGDIGVDGATYKALEFTGETIEALSMDERMTLANM--------------- 215 (418)
T ss_pred EEEcCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCccceEEEEEECCccccCCHHHHhhhhhc---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCccccccCCCccccccccccccccccccccccccccccccCCCCcccccccccCceeecccCcHHHHHHHHh
Q psy3833 344 RINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKA 423 (1087)
Q Consensus 344 ~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL~~ 423 (1087)
++|+||++++||+|++|++||+.
T Consensus 216 ---------------------------------------------------------~~E~GA~~~i~~~D~~t~~yl~~ 238 (418)
T PRK00402 216 ---------------------------------------------------------AIEAGAKAGIFAPDEKTLEYLKE 238 (418)
T ss_pred ---------------------------------------------------------ccccCceeeEecCChHHHHHHHh
Confidence 89999999999999999999999
Q ss_pred cCChHHHHHHHHhhccCCCCCCCcccEEEEEeCCCCccccccCCCCCccccccccchhhhhCCCccceeEEEEeccCCCC
Q psy3833 424 TLREDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNAS 503 (1087)
Q Consensus 424 ~~r~~~~~~~~~~~~~l~aD~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~~g~~~~Id~vfIGSCTn~~ 503 (1087)
+++. ++..+.+|++|.|+++++|||++|||+||+|++|||++|++|+.+. +||+||||||||+|
T Consensus 239 ~~~~--------~~~~l~~D~~a~Y~~~i~iDls~leP~va~P~~Pdnv~~v~~~~g~--------~id~~~IGSCTngr 302 (418)
T PRK00402 239 RAGR--------DYKPWKSDEDAEYEEVYEIDLSKLEPQVAAPHLPDNVKPVSEVEGT--------KVDQVFIGSCTNGR 302 (418)
T ss_pred hccc--------ccccccCCCCCCEEEEEEEEcccceeeeecCCCccceeEchhhCCc--------eeeEEEEecCCCCC
Confidence 7543 2346899999999999999999999999999999999999999863 79999999999999
Q ss_pred hHHHHHHHHHHHHhHhCCCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCccccccCCCcccccCCcceeEE
Q psy3833 504 YEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIV 583 (1087)
Q Consensus 504 ~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~v~~g~~~~~v 583 (1087)
++||++||+|||+ ++++++||++|+|||++|+++|+++|++++|.++||+|..||||+|+|++.+ .+.+|+ ++|
T Consensus 303 ~eDl~~aA~il~G---~kv~~~V~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g-~~~~ge--~~v 376 (418)
T PRK00402 303 LEDLRIAAEILKG---RKVAPGVRLIVIPASQKIYLQALKEGLIEIFVDAGAVVSTPTCGPCLGGHMG-VLAPGE--VCL 376 (418)
T ss_pred hHHHHHHHHHHcC---CCCCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCC-cCCCCC--EEE
Confidence 9999999999997 7999999999999999999999999999999999999999999999998765 466666 789
Q ss_pred eecCCCCCCCCCCCCCcceeecCHHHHHHHHHhCccccCCCC
Q psy3833 584 NSYNRNFTGRNDANPATHAFVTSPELVTALAIKGTLAFDPRS 625 (1087)
Q Consensus 584 sT~NRNF~gR~G~~p~~~~yLaSp~lvAAsAiaG~I~fdp~~ 625 (1087)
||+||||+|||| ++++++||+||++|||+||+|+|+ ||+.
T Consensus 377 sT~NRNF~GR~G-~~~~~~yLaSP~~vaAsAl~G~it-dpr~ 416 (418)
T PRK00402 377 STTNRNFKGRMG-SPESEVYLASPAVAAASAVTGKIT-DPRE 416 (418)
T ss_pred EecCCCCCCCCC-CCCCeEEECCHHHHHHHHhCCeeC-ChHH
Confidence 999999999998 578999999999999999999998 8863
No 22
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=1.2e-112 Score=965.12 Aligned_cols=407 Identities=32% Similarity=0.539 Sum_probs=377.4
Q ss_pred Cchhhhcc------ccccCCCceeccccccccccchhhHHHHHHHHcCCCcccCCcee--eecccccccCCCchhHHHHh
Q psy3833 115 RTLADSSY------EAEQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTI--HCDHLIEAQVGGVEDLKRAK 186 (1087)
Q Consensus 115 kTLAdKg~------E~VrpGe~V~l~~d~v~~qD~Tg~~a~~~~~~~g~~~v~~p~~~--~~DH~v~a~~~~~~d~~~~~ 186 (1087)
+||++|.+ +.|++|++|.+++|++++||.|+|+++.+|+++|..+|++|+++ ++||++|+. +.
T Consensus 1 ~Tl~eKIl~~h~~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~f~~~g~~~V~dp~~v~~~~DH~vpa~-----~~---- 71 (419)
T TIGR02083 1 MTMAEKILAQHAGLESVEPGELILAKLDIVLGNDITTPLAIKAFKEYGGKKVFDPDRVALVPDHFTPNK-----DI---- 71 (419)
T ss_pred CCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEEeccHHHHHHHHHHcCCCcCCCCCCEEEEeCCCCCCC-----CH----
Confidence 46677744 23789999999999999999999999999999998899999865 789999875 23
Q ss_pred hhhHHHHHHHHHHHHhcCce-ecCCCC-cceeeecccc-cccCCCeEecCCCCccCccccceeeccccHHHHHHHHhcCc
Q psy3833 187 SQNEEVYAFLRSAGAKYGVG-FWHPGS-GIIHQIILEN-YAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIP 263 (1087)
Q Consensus 187 ~~n~e~~~fl~~~~~~~Gi~-~~~pG~-GIiHqv~lE~-~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g~ 263 (1087)
++.+.++++|+|+++|||. |+++|. |||||+++|+ |++||++++|+||||||+||||+||||+|++|++.+|++|+
T Consensus 72 -~~a~~~~~~r~fa~~~gi~~f~d~g~~GI~H~v~~E~g~~~PG~~ivg~DSHT~t~Ga~Ga~a~GvG~td~a~~latg~ 150 (419)
T TIGR02083 72 -KSAEQCKMMREFAREQGIEKFFEIGNMGIEHALLPEEGIVKPGDLIIGADSHTCTYGALGAFATGVGSTDMAVGMATGK 150 (419)
T ss_pred -HHHHHHHHHHHHHHHcCCcceecCCCcceeeeeccccCccCCCeEEEecCCCccccCccceeEEccChHHHHHHHhcCC
Confidence 3457899999999999996 999996 9999999996 99999999999999999999999999999999999999999
Q ss_pred eEeecCcEEEEEEECcCCCCcchhHHHHHHHHHhcccCcccEEEEEeCCcccccCccccccccccccccccccccccccc
Q psy3833 264 WELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNK 343 (1087)
Q Consensus 264 ~~l~vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~~ 343 (1087)
+||++||+|+|+|+|+|++||++|||||+|++.|+++|++|++|||+|||+++||+++|||||||
T Consensus 151 ~w~~vPetv~v~l~G~l~~gV~aKDviL~l~~~lg~~G~~~~~iEf~G~~v~~ls~~~R~Tl~NM--------------- 215 (419)
T TIGR02083 151 AWFRVPEAIKFVLKGKLKPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMDDRFTIANM--------------- 215 (419)
T ss_pred eeecCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCHHHHhhhhhc---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCccccccCCCccccccccccccccccccccccccccccccCCCCcccccccccCceeecccCcHHHHHHHHh
Q psy3833 344 RINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKA 423 (1087)
Q Consensus 344 ~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL~~ 423 (1087)
++|+||++++||+|++|++||+.
T Consensus 216 ---------------------------------------------------------a~E~GA~~~i~~~D~~t~~yL~~ 238 (419)
T TIGR02083 216 ---------------------------------------------------------AIEAGAKTGIFPVDEITIEYEKG 238 (419)
T ss_pred ---------------------------------------------------------ccccCceeeEecCChHHHHHHhh
Confidence 89999999999999999999998
Q ss_pred cCChHHHHHHHHhhccCCCCCCCcccEEEEEeCCCCccccccCCCCCccccccccchhhhhCCCccceeEEEEeccCCCC
Q psy3833 424 TLREDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNAS 503 (1087)
Q Consensus 424 ~~r~~~~~~~~~~~~~l~aD~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~~g~~~~Id~vfIGSCTn~~ 503 (1087)
|+++. +..+.+|+||.|+++++||||+|||+||+|++|||++|++|++.. | .+||+||||||||+|
T Consensus 239 r~~~~--------~~~~~~D~dA~Y~~~~~iDls~leP~va~P~~pdnv~~v~e~~~~----g--~~id~v~IGSCTngr 304 (419)
T TIGR02083 239 RGKRE--------EKIYKADEDAKYVRVIEIDLSELEPQVAFPHLPENTKDISEAGKE----E--IKIDQVVIGSCTNGR 304 (419)
T ss_pred CCccc--------hhcccCCCCCCEEEEEEEEccccceeecCCCCcccCcChhhcccc----c--CccCeEEEEcCCCCC
Confidence 76442 346899999999999999999999999999999999999999721 2 369999999999999
Q ss_pred hHHHHHHHHHHHHhHhCCCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCccccccCCCcccccCCcceeEE
Q psy3833 504 YEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIV 583 (1087)
Q Consensus 504 ~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~v~~g~~~~~v 583 (1087)
++||++||+|||+ ++++++||++|+|+|++|+++++++|++++|.+|||.|..||||+|+|++.+ .+.+|+ ++|
T Consensus 305 ~eDl~~AA~iLkG---~kv~~~vr~~v~P~S~~v~~~a~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g-~l~~ge--~~v 378 (419)
T TIGR02083 305 LEDLRLAAEILKG---KTVAPDVRCIIIPGSQNVYLEAMKEGLLEIFIEAGAVVSTPTCGPCLGGHMG-ILAEGE--RAI 378 (419)
T ss_pred hHHHHHHHHHHcC---CCCCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCC-cCCCCC--EEE
Confidence 9999999999997 8999999999999999999999999999999999999999999999999864 466666 799
Q ss_pred eecCCCCCCCCCCCCCcceeecCHHHHHHHHHhCccccCCCC
Q psy3833 584 NSYNRNFTGRNDANPATHAFVTSPELVTALAIKGTLAFDPRS 625 (1087)
Q Consensus 584 sT~NRNF~gR~G~~p~~~~yLaSp~lvAAsAiaG~I~fdp~~ 625 (1087)
||+||||+|||| +|++++|||||++|||+||+|+|+ ||+.
T Consensus 379 sT~NRNF~GRmG-~~~~~~yLaSP~~vAAsAi~G~it-dpr~ 418 (419)
T TIGR02083 379 STTNRNFVGRMG-HPKSEVYLASPAVAAASAIKGYIA-SPEE 418 (419)
T ss_pred EecCCCCCccCC-CCCCeEEECCHHHHHHHHhCCCcC-Cccc
Confidence 999999999998 577999999999999999999998 8863
No 23
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=1.1e-112 Score=965.74 Aligned_cols=403 Identities=32% Similarity=0.531 Sum_probs=377.4
Q ss_pred Cchhhhccc-----cccCCCceeccccccccccchhhHHHHHHHHcCCCcccCCce--eeecccccccCCCchhHHHHhh
Q psy3833 115 RTLADSSYE-----AEQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPST--IHCDHLIEAQVGGVEDLKRAKS 187 (1087)
Q Consensus 115 kTLAdKg~E-----~VrpGe~V~l~~d~v~~qD~Tg~~a~~~~~~~g~~~v~~p~~--~~~DH~v~a~~~~~~d~~~~~~ 187 (1087)
+||+||.+. .+++|+++.+++|++++||.|+|+++++|.++| .++++|++ +++||++|+.. .+
T Consensus 1 ~Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~~~g-~~v~~p~~~~~~~DH~~p~~~-----~~---- 70 (412)
T TIGR02086 1 MTLAEKILSEKVGRPVEAGEIVEVEVDLAMAHDGTGPLAIETLRELG-ARVEDPEKIVIFFDHVVPPPT-----VE---- 70 (412)
T ss_pred CCHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHHHHcC-CcccCCCCEEEECCCCCCCCC-----HH----
Confidence 477777552 267999999999999999999999999999999 88999986 48999999753 22
Q ss_pred hhHHHHHHHHHHHHhcCceecCCCCcceeeecccc-cccCCCeEecCCCCccCccccceeeccccHHHHHHHHhcCceEe
Q psy3833 188 QNEEVYAFLRSAGAKYGVGFWHPGSGIIHQIILEN-YAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWEL 266 (1087)
Q Consensus 188 ~n~e~~~fl~~~~~~~Gi~~~~pG~GIiHqv~lE~-~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g~~~l 266 (1087)
+.+.++++++|+++|||.+++||+|||||+++|+ +++||++++|+||||||+||||+||||||++|++.+|++|++||
T Consensus 71 -~a~~~~~~r~fa~~~gi~~~~~g~GI~H~v~~E~G~~~PG~~iig~DSHT~t~GalGa~a~GvG~td~a~~latg~~~~ 149 (412)
T TIGR02086 71 -AANRQKEIREFAKEHGIPVFDVGEGICHQVLVEEGYAGPGMVVVGGDSHTCTSGAVGAFATGMGATDVAIALATGKTWL 149 (412)
T ss_pred -HHHHHHHHHHHHHHcCCcEECCCCCeEeEEhhhcCccCCCcEEEecCCCccccchhhheeecccHHHHHHHHhcCCchh
Confidence 3456799999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred ecCcEEEEEEECcCCCCcchhHHHHHHHHHhcccCcccEEEEEeCCcccccCccccccccccccccccccccccccchhh
Q psy3833 267 KCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRIN 346 (1087)
Q Consensus 267 ~vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~~~v~ 346 (1087)
++||+|+|+|+|+|++||++|||||+|++.|+++|++|++|||.|+|+++||+++|||||||
T Consensus 150 ~vPeti~v~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~vEf~G~~v~~Ls~~~R~Ti~NM------------------ 211 (412)
T TIGR02086 150 KVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFGLPIEAMSMDERMTLCNM------------------ 211 (412)
T ss_pred cCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCcCccceeEEEEECccccccCHHHHhhhhhc------------------
Confidence 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccccCCCccccccccccccccccccccccccccccccCCCCcccccccccCceeecccCcHHHHHHHHhcCC
Q psy3833 347 EYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLR 426 (1087)
Q Consensus 347 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL~~~~r 426 (1087)
++|+||++++||+|++|++||+.++|
T Consensus 212 ------------------------------------------------------a~E~GA~~~i~~~D~~t~~yl~~~~~ 237 (412)
T TIGR02086 212 ------------------------------------------------------AVEAGAKAGIVVPDEETYEYLKKRRG 237 (412)
T ss_pred ------------------------------------------------------ccccCceeeEecCCHHHHHHHHhcCC
Confidence 89999999999999999999999987
Q ss_pred hHHHHHHHHhhccCCCCCCCcccEEEEEeCCCCccccccCCCCCccccccccchhhhhCCCccceeEEEEeccCCCChHH
Q psy3833 427 EDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNASYED 506 (1087)
Q Consensus 427 ~~~~~~~~~~~~~l~aD~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~~g~~~~Id~vfIGSCTn~~~~d 506 (1087)
.. | ..+.+|+||+|+++++|||++|||+||+|++|||++|++++.+. +||+||||||||+|++|
T Consensus 238 ~~-------~-~~~~~D~~a~Y~~~i~iDls~leP~va~P~~P~nv~~v~~~~~~--------~id~~~IGSCTngr~~D 301 (412)
T TIGR02086 238 YE-------F-RILRPDPGAKYDDEIEIDLSDLEPLVAVPHSVDNVRPVSDVEGT--------EIDQVFIGSCTNGRIED 301 (412)
T ss_pred cc-------c-ccccCCCCCCEEEEEEEEccceeEEecCCCChHhcccchhhccc--------ceeEEEEeccCCCChHH
Confidence 53 3 46899999999999999999999999999999999999999864 79999999999999999
Q ss_pred HHHHHHHHHHhHhCCCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCccccccCCCcccccCCcceeEEeec
Q psy3833 507 MSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSY 586 (1087)
Q Consensus 507 l~aAA~ilk~a~~~~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~v~~g~~~~~vsT~ 586 (1087)
|++||+|||+ +++++++|++|+|+|++|+++++++|++++|.+|||+|.+||||+|+|++.. .+.+|+ ++|||+
T Consensus 302 l~~aA~vLkG---~kv~~~v~~~v~P~S~~v~~~~~~~G~~~~~~~aGa~i~~pgCg~C~G~~~g-~~~~ge--~~vsT~ 375 (412)
T TIGR02086 302 LRIAAEILEG---RRVHPDVRLIVVPASRKVYERALEEGIILTLIRAGAIICPPGCGPCLGRHMG-VLGDGE--VCVSTT 375 (412)
T ss_pred HHHHHHHHcC---CCCCCCcCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCC-cCCCCC--EEEEec
Confidence 9999999997 7999999999999999999999999999999999999999999999999864 456666 799999
Q ss_pred CCCCCCCCCCCCCcceeecCHHHHHHHHHhCccccCCC
Q psy3833 587 NRNFTGRNDANPATHAFVTSPELVTALAIKGTLAFDPR 624 (1087)
Q Consensus 587 NRNF~gR~G~~p~~~~yLaSp~lvAAsAiaG~I~fdp~ 624 (1087)
||||+|||| ++++++||+||++|||+||+|+|+ ||+
T Consensus 376 NRNF~GR~G-~~~~~~yLaSP~~aAAsAi~G~it-dpr 411 (412)
T TIGR02086 376 NRNFRGRMG-SPDAEIYLASPATAAASAVEGYIT-DPQ 411 (412)
T ss_pred CCCCCcCCC-CCCCcEEECCHHHHHHHHhCCccC-CCC
Confidence 999999998 467899999999999999999998 886
No 24
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-112 Score=935.94 Aligned_cols=409 Identities=32% Similarity=0.571 Sum_probs=382.4
Q ss_pred CCchhhhccc------cccCCCceeccccccccccchhhHHHHHHHHcCCCcccCCcee--eecccccccCCCchhHHHH
Q psy3833 114 GRTLADSSYE------AEQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTI--HCDHLIEAQVGGVEDLKRA 185 (1087)
Q Consensus 114 GkTLAdKg~E------~VrpGe~V~l~~d~v~~qD~Tg~~a~~~~~~~g~~~v~~p~~~--~~DH~v~a~~~~~~d~~~~ 185 (1087)
++||++|.|+ .+.+|+.+.+++|+++.||.|+|.|+..|++.|. +|+.|+++ +.||++|+. +++.
T Consensus 2 ~~Tl~eKI~~~h~~~~~~~~G~~~~~~iD~~l~HdvTsP~a~~~lr~~g~-kV~~p~k~~~~~DH~vPt~-----~~~~- 74 (423)
T COG0065 2 AKTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEGLREAGR-KVRDPEKTVATFDHNVPTP-----DIKA- 74 (423)
T ss_pred CccHHHHHHHHhcccccCCCCCcEEEEeeeeeeeccccHHHHHHHHHhCC-cccCccceEEEecCCCCCc-----cHHH-
Confidence 5899999773 3678899999999999999999999999999998 89999864 799999974 3443
Q ss_pred hhhhHHHHHHHHHHHHhcCc-eecCCC-Ccceeeecccc-cccCCCeEecCCCCccCccccceeeccccHHHHHHHHhcC
Q psy3833 186 KSQNEEVYAFLRSAGAKYGV-GFWHPG-SGIIHQIILEN-YAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADI 262 (1087)
Q Consensus 186 ~~~n~e~~~fl~~~~~~~Gi-~~~~pG-~GIiHqv~lE~-~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g 262 (1087)
.+.++.|+++++++|| .|++.| +|||||+.+|+ +++||++++|+||||||+|||||||||+|++|++.+|++|
T Consensus 75 ----a~~~~~lr~~~ke~Gi~~~~~~g~~GI~H~v~pE~G~~~PG~~Iv~gDSHT~T~GAfGAfA~GiGttdva~vlatg 150 (423)
T COG0065 75 ----AEQQKELRENAKEFGIVNFYDVGDQGIVHQVGPEQGLTLPGMTIVGGDSHTCTHGAFGAFAFGIGTTDVAHVLATG 150 (423)
T ss_pred ----HHHHHHHHHHHHHhCCeeeecCCCCcEEEEEeccccccCCCcEEEecccCcccchhhhhhhccccHHHHHHHHHhC
Confidence 3678899999999994 689999 99999999999 9999999999999999999999999999999999999999
Q ss_pred ceEeecCcEEEEEEECcCCCCcchhHHHHHHHHHhcccCcccEEEEEeCCcccccCcccccccccccccccccccccccc
Q psy3833 263 PWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYN 342 (1087)
Q Consensus 263 ~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~ 342 (1087)
++|+++||+++|+++|+|++|||+|||||+|++.++++|++|+++||+|+.+++||+++|||||||
T Consensus 151 ~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme~RmTicNM-------------- 216 (423)
T COG0065 151 KLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSMEGRMTLCNM-------------- 216 (423)
T ss_pred ceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceEEEEEeccchhhCChhhhhhhhhh--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhcccCCCccccccCCCccccccccccccccccccccccccccccccCCCCcccccccccCceeecccCcHHHHHHHH
Q psy3833 343 KRINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLK 422 (1087)
Q Consensus 343 ~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL~ 422 (1087)
++|+||++|++++|++|++||+
T Consensus 217 ----------------------------------------------------------aIE~GAkaGii~pDe~T~~Y~k 238 (423)
T COG0065 217 ----------------------------------------------------------AIEAGAKAGIIAPDETTFEYLK 238 (423)
T ss_pred ----------------------------------------------------------hhhhcccceeeCCcHhHHHHHH
Confidence 8899999999999999999999
Q ss_pred hcCChHHHHHHHHhhccCCCCCCCcccEEEEEeCCCCccccccCCCCCccccccccchhhhhCCCccceeEEEEeccCCC
Q psy3833 423 ATLREDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNA 502 (1087)
Q Consensus 423 ~~~r~~~~~~~~~~~~~l~aD~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~~g~~~~Id~vfIGSCTn~ 502 (1087)
. ++.+.+||+.|++|+||+|+++|+||+++|||+|+||++|||++|++|+.+. |++||+||||||||+
T Consensus 239 ~------~~~a~~~~~~l~sD~dA~y~~~v~~d~s~leP~Va~p~~p~nv~~v~e~~~~------~i~iDqVFIGSCTNg 306 (423)
T COG0065 239 E------WDGAVAYWKTLKSDEDAVYDKVVELDASDLEPQVAWPTNPDNVVPVSEVEPD------PIKIDQVFIGSCTNG 306 (423)
T ss_pred H------HhccccccceecCCCCCceeEEEEEEcccCCceeeCCCCcccceecccccCC------ceeeceEEEeccCCc
Confidence 5 3344567788999999999999999999999999999999999999998753 468999999999999
Q ss_pred ChHHHHHHHHHHHHhHhCCCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCccccccCCCcccccCCcceeE
Q psy3833 503 SYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTI 582 (1087)
Q Consensus 503 ~~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~v~~g~~~~~ 582 (1087)
|+|||++||+|||+ +++++.||++|+|+|+.|+++++++||.++|.+|||.|..||||||+|++.. .+.+|| .|
T Consensus 307 RieDLr~AA~Ilkg---rkva~~Vr~iVvP~S~~V~~qA~~eGl~~if~~AG~~~~~pgCg~CLg~~~g-vL~~gE--~c 380 (423)
T COG0065 307 RIEDLRAAAEILKG---RKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLGMHPG-VLGPGE--RC 380 (423)
T ss_pred cHHHHHHHHHHhcc---CccCCCceEEEecCcHHHHHHHHHccHHHHHHhcCcEEcCCCCccccccCCC-cCCCCC--EE
Confidence 99999999999996 8999999999999999999999999999999999999999999999999874 678888 68
Q ss_pred EeecCCCCCCCCCCCCCcceeecCHHHHHHHHHhCccccCCCC
Q psy3833 583 VNSYNRNFTGRNDANPATHAFVTSPELVTALAIKGTLAFDPRS 625 (1087)
Q Consensus 583 vsT~NRNF~gR~G~~p~~~~yLaSp~lvAAsAiaG~I~fdp~~ 625 (1087)
+|||||||+|||| ++++++||+||++|||+|+.|+|+ ||+.
T Consensus 381 ~STSNRNF~GRqG-~~~a~~~L~SPA~AAAaAv~G~i~-dpr~ 421 (423)
T COG0065 381 ASTSNRNFEGRQG-SPGARTYLASPAMAAAAAVEGEIV-DPRE 421 (423)
T ss_pred eeccCCCCCccCC-CCCCeEEecCHHHHHHHHhhCEec-Chhh
Confidence 9999999999999 578999999999999999999998 8874
No 25
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=5.1e-112 Score=975.35 Aligned_cols=428 Identities=29% Similarity=0.475 Sum_probs=385.4
Q ss_pred CCCchhhhccc-----cccCCCceeccccccccccchhhHHHHHHHHcCCCcccCCcee--eecccccccCCCchhHHHH
Q psy3833 113 KGRTLADSSYE-----AEQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTI--HCDHLIEAQVGGVEDLKRA 185 (1087)
Q Consensus 113 kGkTLAdKg~E-----~VrpGe~V~l~~d~v~~qD~Tg~~a~~~~~~~g~~~v~~p~~~--~~DH~v~a~~~~~~d~~~~ 185 (1087)
+|+||++|.+. .+.+| .|.++||++++||.|+|+|+++|+++|. ++++|+++ ++||++|+...+. ....
T Consensus 2 m~~Tl~eKI~~~h~~~~~~~g-~v~~~vD~~~~hD~t~p~a~~~~~~~g~-~v~~P~~~~~~~DH~vp~~~~~~--~~~~ 77 (471)
T PRK12466 2 MPRTLYDKLWDSHTVARLDDG-HVLLYIDRHLLNEYTSPQAFSGLRARGR-TVRRPDLTLAVVDHVVPTRPGRD--RGIT 77 (471)
T ss_pred CCcCHHHHHHHHhcCCCCCCC-EEEEeccEEEEeccccHHHHHHHHHcCC-cccCCCCeEEEeCCCCCCCcccc--cccc
Confidence 57899999773 24566 8999999999999999999999999885 68999865 6999999876321 1112
Q ss_pred hhhhHHHHHHHHHHHHhcCceecC---CCCcceeeecccc-cccCCCeEecCCCCccCccccceeeccccHHHHHHHHhc
Q psy3833 186 KSQNEEVYAFLRSAGAKYGVGFWH---PGSGIIHQIILEN-YAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMAD 261 (1087)
Q Consensus 186 ~~~n~e~~~fl~~~~~~~Gi~~~~---pG~GIiHqv~lE~-~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~ 261 (1087)
...++++++++++++++|||.||+ ||+|||||+++|+ +++||++++||||||||+||||+||||||++|++.+|+|
T Consensus 78 ~~~~~~~~~~~r~~a~~~gi~~~~~~~p~~GI~Hqv~~E~G~~~PG~~ivg~DSHT~t~GalGala~GvG~td~~~~l~t 157 (471)
T PRK12466 78 DPGGALQVDYLRENCADFGIRLFDVDDPRQGIVHVVAPELGLTLPGMVIVCGDSHTTTYGALGALAFGIGTSEVEHVLAT 157 (471)
T ss_pred CHHHHHHHHHHHHHHHHcCCeeeccCCCCCCEEeEEccccCcccCCceEEccCCCcCCcChhhheEEccCHHHHHHHHhC
Confidence 234568899999999999999875 7779999999998 999999999999999999999999999999999999999
Q ss_pred CceEeecCcEEEEEEECcCCCCcchhHHHHHHHHHhcccCcccEEEEEeCCcccccCccccccccccccccccccccccc
Q psy3833 262 IPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPY 341 (1087)
Q Consensus 262 g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~ 341 (1087)
|++||++||+|+|+|+|+|++|||+|||||+|++.|+++|++|++|||+||||++||+++|||||||
T Consensus 158 g~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~iEf~G~~i~~Ls~~~R~Ti~NM------------- 224 (471)
T PRK12466 158 QTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIEFAGEAIRALSMEGRMTLCNM------------- 224 (471)
T ss_pred CeEEeeCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCHHHHhhhhhc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhcccCCCccccccCCCccccccccccccccccccccccccccccccCCCCcccccccccCceeecccCcHHHHHHH
Q psy3833 342 NKRINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFL 421 (1087)
Q Consensus 342 ~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL 421 (1087)
++|+||++++||+|++|.+||
T Consensus 225 -----------------------------------------------------------a~E~GA~~gi~~~D~~t~~yl 245 (471)
T PRK12466 225 -----------------------------------------------------------AVEAGARGGLIAPDETTFDYL 245 (471)
T ss_pred -----------------------------------------------------------ccccCceEEEecCChHHHHHH
Confidence 899999999999999999999
Q ss_pred HhcCChH---HHHHHHHhhccCCCCCCCcccEEEEEeCCCCccccccCCCCCccccccccchhhh---------------
Q psy3833 422 KATLRED---IAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAK--------------- 483 (1087)
Q Consensus 422 ~~~~r~~---~~~~~~~~~~~l~aD~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~--------------- 483 (1087)
+.|+|.. .++.+..++..|.+|++|.|+++++||||+|||+||+|++|||++||+|+...++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~D~~a~Y~~~i~iDls~leP~va~P~~P~n~~~v~e~~~~~~~~~~~~~~~~~~~~~ 325 (471)
T PRK12466 246 RGRPRAPKGALWDAALAYWRTLRSDADAVFDREVEIDAADIAPQVTWGTSPDQAVPITGRVPDPAAEADPARRAAMERAL 325 (471)
T ss_pred HhCCCchhHHHHHHHHhhhhcccCCCCCceEEEEEEEcccceEeecCCCChhhceEccccCcChhhhcchhhhhhhhhhh
Confidence 9998864 3444555556789999999999999999999999999999999999999644321
Q ss_pred -----hCCCc---cceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCc
Q psy3833 484 -----KNGWP---MDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGG 555 (1087)
Q Consensus 484 -----~~g~~---~~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa 555 (1087)
+.|++ .+||+||||||||+|++||++||+|||+ +++++.||++|+|||++|+++|+++|++++|.+|||
T Consensus 326 ~y~~l~~g~~~~~~~Id~~~IGSCTNgr~eDl~~aA~ilkG---~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~~~~aG~ 402 (471)
T PRK12466 326 DYMGLTPGTPLAGIPIDRVFIGSCTNGRIEDLRAAAAVLRG---RKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGF 402 (471)
T ss_pred hhcccCCCcccCCceEEEEEEeccCCCChHHHHHHHHHHcC---CCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCC
Confidence 11222 4799999999999999999999999997 789999999999999999999999999999999999
Q ss_pred EEecCCccccccCCCcccccCCcceeEEeecCCCCCCCCCCCCCcceeecCHHHHHHHHHhCccccCCCC
Q psy3833 556 TVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAIKGTLAFDPRS 625 (1087)
Q Consensus 556 ~i~~pGCg~CiG~~~~~~v~~g~~~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvAAsAiaG~I~fdp~~ 625 (1087)
+|..||||+|+|++.+ .+++|+ ++|||+||||+||||+ ++++|||||++||||||+|+|+ ||+.
T Consensus 403 ~i~~~gCg~C~G~~~~-~~~~ge--~~vsT~NRNF~GR~G~--~~~~yLaSP~~vAAsAi~G~I~-dpr~ 466 (471)
T PRK12466 403 EWREPGCSMCLAMNDD-VLAPGE--RCASTTNRNFEGRQGP--GARTHLMSPAMVAAAAVAGHIT-DVRS 466 (471)
T ss_pred EEcCCccccccCcCCC-CCCCCC--EEEEecCCCCCCCCCC--CCcEEECCHHHHHHHHhCcEeC-CHHH
Confidence 9999999999999875 456666 6899999999999984 6899999999999999999998 8863
No 26
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=7.6e-111 Score=965.53 Aligned_cols=428 Identities=29% Similarity=0.460 Sum_probs=382.9
Q ss_pred CCCchhhhcccc--c--cCCCceeccccccccccchhhHHHHHHHHcCCCcccCCcee--eecccccccCCCchhHHHHh
Q psy3833 113 KGRTLADSSYEA--E--QTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTI--HCDHLIEAQVGGVEDLKRAK 186 (1087)
Q Consensus 113 kGkTLAdKg~E~--V--rpGe~V~l~~d~v~~qD~Tg~~a~~~~~~~g~~~v~~p~~~--~~DH~v~a~~~~~~d~~~~~ 186 (1087)
+++||++|.++. + .+|+.+.+++|++++||.|+|+++.+|+++|. +++.|+++ ++||++|+... +.....
T Consensus 1 m~~tl~eKIl~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~~~~~~g~-~v~~p~~~~~~~DH~v~~~~~---~~~~~~ 76 (466)
T PRK05478 1 MGKTLYDKLWDAHVVHEEEDGPDLLYIDRHLVHEVTSPQAFEGLRLAGR-KVRRPDLTFATMDHNVPTTDR---DLPIAD 76 (466)
T ss_pred CCCCHHHHHHHHhcCCCCCCCEEEEEeccceeecccHHHHHHHHHHcCC-CccCCCCeEEEcCCCCCCCcc---cccccC
Confidence 368999997742 1 48999999999999999999999999999885 68888765 69999998753 111111
Q ss_pred hhhHHHHHHHHHHHHhcCceecC---CCCcceeeecccc-cccCCCeEecCCCCccCccccceeeccccHHHHHHHHhcC
Q psy3833 187 SQNEEVYAFLRSAGAKYGVGFWH---PGSGIIHQIILEN-YAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADI 262 (1087)
Q Consensus 187 ~~n~e~~~fl~~~~~~~Gi~~~~---pG~GIiHqv~lE~-~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g 262 (1087)
....++++++|+++++|||.|++ ||+|||||+++|+ +++||++++||||||||+||||+||||||++|++.+|+||
T Consensus 77 ~~~~~~~~~~r~~a~~~gi~~~~~~~~~~GI~Hqv~~E~g~~~PG~~ivGtDSHT~t~GalGa~a~GvG~td~a~~m~tg 156 (466)
T PRK05478 77 PVSRIQVETLEKNCKEFGITLFDLGDPRQGIVHVVGPEQGLTLPGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQ 156 (466)
T ss_pred HHHHHHHHHHHHHHHHcCCeeeccCCCCCCEeCeEccccccccCCceEEecCCCccccchhhheEeCCCHHHHHHHHhCC
Confidence 23467899999999999999998 5569999999999 9999999999999999999999999999999999999999
Q ss_pred ceEeecCcEEEEEEECcCCCCcchhHHHHHHHHHhcccCcccEEEEEeCCcccccCcccccccccccccccccccccccc
Q psy3833 263 PWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYN 342 (1087)
Q Consensus 263 ~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~ 342 (1087)
++||++||+|+|+|+|+|++|||+|||||+|++.|+++|++|++|||+||||++||+++|+|||||
T Consensus 157 ~~~~~vPe~i~V~l~G~l~~gV~aKDviL~ii~~l~~~g~~g~~vEf~G~gv~~Ls~~~R~Ti~NM-------------- 222 (466)
T PRK05478 157 TLLQKKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGYVIEFAGEAIRALSMEGRMTICNM-------------- 222 (466)
T ss_pred cEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCcceEEEEEECccccccCHHHHhhhhhc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhcccCCCccccccCCCccccccccccccccccccccccccccccccCCCCcccccccccCceeecccCcHHHHHHHH
Q psy3833 343 KRINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLK 422 (1087)
Q Consensus 343 ~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL~ 422 (1087)
++|+||++|+||+|++|++||+
T Consensus 223 ----------------------------------------------------------a~E~GA~~~i~~~De~t~~yl~ 244 (466)
T PRK05478 223 ----------------------------------------------------------SIEAGARAGLVAPDETTFEYLK 244 (466)
T ss_pred ----------------------------------------------------------ccccCceeeeecCCHhHHHHHh
Confidence 8999999999999999999999
Q ss_pred hcCChH---HHHHHHHhhccCCCCCCCcccEEEEEeCCCCccccccCCCCCccccccccchhhh----------------
Q psy3833 423 ATLRED---IAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAK---------------- 483 (1087)
Q Consensus 423 ~~~r~~---~~~~~~~~~~~l~aD~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~---------------- 483 (1087)
.|++.. .++.+.+++..+++|++|+|+++++||||+|||+||+|++|||++||+|+...++
T Consensus 245 ~r~~~~~~~~~~~a~~~~~~l~~D~~a~Y~~~i~iDls~leP~va~P~~P~n~~~v~e~~~~~~~~~~~~~~~~~~~~~~ 324 (466)
T PRK05478 245 GRPFAPKGEDWDKAVAYWKTLKSDEDAVFDKVVTLDAADIEPQVTWGTNPGQVISIDGKVPDPEDFADPVKRASAERALA 324 (466)
T ss_pred cCCccccHHHHHHHHHhhhcccCCCCCceeEEEEEEcccceeeecCCCChhhceEccccCcChhhhcchhhhhhhhhhhh
Confidence 876542 3444555556789999999999999999999999999999999999999643221
Q ss_pred ----hCCCc---cceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCcE
Q psy3833 484 ----KNGWP---MDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGT 556 (1087)
Q Consensus 484 ----~~g~~---~~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~ 556 (1087)
+.|++ .+||+||||||||+|++||++||+|||+ +++++.||++|+|||++|+++|+++|++++|.+|||+
T Consensus 325 y~~~~~g~~~~~~~id~~~IGSCTNg~~~dl~~aA~ilkG---~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~ 401 (466)
T PRK05478 325 YMGLKPGTPITDIKIDKVFIGSCTNSRIEDLRAAAAVVKG---RKVAPGVRALVVPGSGLVKAQAEAEGLDKIFIEAGFE 401 (466)
T ss_pred hcccccCCccCCCeEEEEEEecCCCCCcHHHHHHHHHhcC---CCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCCE
Confidence 11222 3799999999999999999999999997 7999999999999999999999999999999999999
Q ss_pred EecCCccccccCCCcccccCCcceeEEeecCCCCCCCCCCCCCcceeecCHHHHHHHHHhCccccCCCC
Q psy3833 557 VLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAIKGTLAFDPRS 625 (1087)
Q Consensus 557 i~~pGCg~CiG~~~~~~v~~g~~~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvAAsAiaG~I~fdp~~ 625 (1087)
|.+||||+|+|++.+ .+.+|+ ++|||+||||+|||| +.+++|||||++|||+|++|+|+ ||+.
T Consensus 402 i~~~gCg~C~G~~~~-~l~~ge--~~vst~NRNF~GR~G--~~~~~yLaSP~~vaAsAi~G~It-dpr~ 464 (466)
T PRK05478 402 WREPGCSMCLAMNPD-KLPPGE--RCASTSNRNFEGRQG--KGGRTHLVSPAMAAAAAITGHFV-DVRE 464 (466)
T ss_pred EcCCccccccCcCCC-CCCCCC--EEEEecCCCCCCCCC--CCCCEEEcCHHHHHHHHhCCCcC-Chhh
Confidence 999999999999865 466666 689999999999998 45789999999999999999998 8863
No 27
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=1.8e-110 Score=961.23 Aligned_cols=425 Identities=29% Similarity=0.481 Sum_probs=381.4
Q ss_pred CCchhhhcccc----ccCCCceeccccccccccchhhHHHHHHHHcCCCcccCCce--eeecccccccCC--CchhHHHH
Q psy3833 114 GRTLADSSYEA----EQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPST--IHCDHLIEAQVG--GVEDLKRA 185 (1087)
Q Consensus 114 GkTLAdKg~E~----VrpGe~V~l~~d~v~~qD~Tg~~a~~~~~~~g~~~v~~p~~--~~~DH~v~a~~~--~~~d~~~~ 185 (1087)
|+||++|.++. .++|+.+.+++|++++||.|+|+++..|+++| .+++.|+. +++||++|+... +..|
T Consensus 2 ~~Tl~eKI~~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~~~~~~g-~~v~~p~~~~~~~DH~vp~~~~~~~~~~---- 76 (465)
T TIGR00170 2 PRTLYEKLFDAHIVYEAEGETPLLYIDRHLIHEVTSPQAFEGLRQAG-RKVRRPQKTFATMDHNIPTQNRDFNIKD---- 76 (465)
T ss_pred CCCHHHHHHHHhcCCCCCCCEEEEEeeeeeecccchHHHHHHHHHcC-CCcCCCcCEEEEeCCCCCCCCccccccC----
Confidence 68999997742 25799999999999999999999999999988 57888865 489999998642 1122
Q ss_pred hhhhHHHHHHHHHHHHhcCceec---CCCCcceeeecccc-cccCCCeEecCCCCccCccccceeeccccHHHHHHHHhc
Q psy3833 186 KSQNEEVYAFLRSAGAKYGVGFW---HPGSGIIHQIILEN-YAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMAD 261 (1087)
Q Consensus 186 ~~~n~e~~~fl~~~~~~~Gi~~~---~pG~GIiHqv~lE~-~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~ 261 (1087)
...++.++++++++++|||.|+ +||+|||||+++|+ +++||++++||||||||+||||+||||||++|++.+|+|
T Consensus 77 -~~~~~~~~~~r~~a~~~gi~~~~v~~p~~GI~Hqv~~E~g~~~PG~~ivgtDSHT~t~GalGala~GvG~te~~~~l~t 155 (465)
T TIGR00170 77 -EVAKIQVTELEKNCKEFGVRLFDLHSVDQGIVHVMGPEQGLTLPGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLAT 155 (465)
T ss_pred -HHHHHHHHHHHHHHHHhCCeeeccCCCCCCEeCeEccccCcccCCceEEecCCCccccccccceEEccCHHHHHHHHhC
Confidence 2345679999999999999876 56789999999996 999999999999999999999999999999999999999
Q ss_pred CceEeecCcEEEEEEECcCCCCcchhHHHHHHHHHhcccCcccEEEEEeCCcccccCccccccccccccccccccccccc
Q psy3833 262 IPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPY 341 (1087)
Q Consensus 262 g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~ 341 (1087)
|++||++||+|+|+|+|+|++|||+|||||+|++.|+++|++|++|||+|+||++||+++|||||||
T Consensus 156 g~~~~~vPe~v~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~vEF~G~gv~~Ls~~~R~Ti~NM------------- 222 (465)
T TIGR00170 156 QTLKQARAKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGHVIEFCGEAIRDLSMEGRMTVCNM------------- 222 (465)
T ss_pred CcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCccCcceEEEEEEccccccccHHHhhhhhhc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhcccCCCccccccCCCccccccccccccccccccccccccccccccCCCCcccccccccCceeecccCcHHHHHHH
Q psy3833 342 NKRINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFL 421 (1087)
Q Consensus 342 ~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL 421 (1087)
++|+||++++||+|++|++||
T Consensus 223 -----------------------------------------------------------a~E~GA~~gi~~~D~~t~~yl 243 (465)
T TIGR00170 223 -----------------------------------------------------------AIEAGARAGLIAPDETTFEYC 243 (465)
T ss_pred -----------------------------------------------------------chhhCceeeEecCChhHHHHH
Confidence 899999999999999999999
Q ss_pred HhcCChH---HHHHHHHhhccCCCCCCCcccEEEEEeCCCCccccccCCCCCccccccccchhhh---------------
Q psy3833 422 KATLRED---IAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAK--------------- 483 (1087)
Q Consensus 422 ~~~~r~~---~~~~~~~~~~~l~aD~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~--------------- 483 (1087)
+.|++.. .++.+..++..+++|++|.|+++++||||+|||+||+|++|||++||+|+.....
T Consensus 244 ~~r~~~~~~~~~~~~~~~~~~l~~d~~a~Y~~~i~iDls~leP~Va~P~~P~n~~~v~e~~~~~~~~~~~~~~~~~~~~~ 323 (465)
T TIGR00170 244 KGRPHAPKGKEFDKAVAYWKTLKTDEGAVFDTVITLEANDISPQVTWGTNPGQVLPVNSEVPDPESFADPVDKASAERAL 323 (465)
T ss_pred hcCCcccchhHHHHHHHhhhhccCCCCCceeEEEEEEcccceeeecCCCChhhccCccccCCChhhhcchhhhhhhhhhh
Confidence 9887632 3455555566789999999999999999999999999999999999999532110
Q ss_pred -----hCCCc---cceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCc
Q psy3833 484 -----KNGWP---MDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGG 555 (1087)
Q Consensus 484 -----~~g~~---~~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa 555 (1087)
+.|++ .+||+||||||||+|++||++||+|||+ +++++.||++|+|||++|+++|+++|++++|.++||
T Consensus 324 ~~~~~~~~~~~~~~~Id~~~IGSCTNgr~~dl~aaA~vlkG---~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~ 400 (465)
T TIGR00170 324 AYMGLEPGTPLKDIKVDKVFIGSCTNSRIEDLRAAAAVIKG---RKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGF 400 (465)
T ss_pred hhccccCCcccCCCeEEEEEEecCCCCCHHHHHHHHHHhcC---CCcCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCC
Confidence 01222 3799999999999999999999999997 799999999999999999999999999999999999
Q ss_pred EEecCCccccccCCCcccccCCcceeEEeecCCCCCCCCCCCCCcceeecCHHHHHHHHHhCccccCCCC
Q psy3833 556 TVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAIKGTLAFDPRS 625 (1087)
Q Consensus 556 ~i~~pGCg~CiG~~~~~~v~~g~~~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvAAsAiaG~I~fdp~~ 625 (1087)
+|.+||||+|+|++++ .+++|+ +++||+||||+||||+ ++++|||||++||||||+|+|+ ||+.
T Consensus 401 ~i~~~gCg~C~G~~~~-~~~~ge--~~isTsNRNF~GR~G~--~~~~yLaSP~~vAAsAi~G~it-dpr~ 464 (465)
T TIGR00170 401 EWREPGCSMCLGMNND-RLPEGE--RCASTSNRNFEGRQGR--GGRTHLVSPAMAAAAAIHGHFV-DIRK 464 (465)
T ss_pred EEcCCccccccCcCCC-CCCCCC--EEEEecCCCCCCCCCC--CCCEEEcCHHHHHHHHhCceec-CcCc
Confidence 9999999999999875 456666 6889999999999984 6799999999999999999998 8863
No 28
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=2e-110 Score=939.34 Aligned_cols=379 Identities=43% Similarity=0.728 Sum_probs=358.1
Q ss_pred cccccccchhhHHHHHHHHcCCCcccCCce-eeecccccccCCCchhHHHHhhhhHHHHHHHHHHHHhcCceecCCCCcc
Q psy3833 136 DRVAMQDATAQMAMLQFISSGLPRVAVPST-IHCDHLIEAQVGGVEDLKRAKSQNEEVYAFLRSAGAKYGVGFWHPGSGI 214 (1087)
Q Consensus 136 d~v~~qD~Tg~~a~~~~~~~g~~~v~~p~~-~~~DH~v~a~~~~~~d~~~~~~~n~e~~~fl~~~~~~~Gi~~~~pG~GI 214 (1087)
|++++||.|+|+++.+|+++|.++++.|.. +++||++|+. +. +|.++++|+|+|+++|||.|++||+||
T Consensus 1 D~~~~hD~t~p~a~~~~~~~g~~~v~~~~~~~~~DH~~p~~-----~~-----~~a~~~~~lr~~a~~~gi~~~~~g~GI 70 (380)
T cd01585 1 DQTLTQDATGTMAYLQFEAMGVDRVRTELSVSYVDHNTLQT-----DF-----ENADDHRFLQTVAARYGIYFSRPGNGI 70 (380)
T ss_pred CceEEEeccHHHHHHHHHHcCCCeeCCCCeEEEeCCCCCCC-----Ch-----HHHHHHHHHHHHHHHcCCEEECCCCCe
Confidence 789999999999999999999999998864 3899999974 22 467899999999999999999999999
Q ss_pred eeeecccccccCCCeEecCCCCccCccccceeeccccHHHHHHHHhcCceEeecCcEEEEEEECcCCCCcchhHHHHHHH
Q psy3833 215 IHQIILENYAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVA 294 (1087)
Q Consensus 215 iHqv~lE~~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i~ 294 (1087)
|||+++|++++||++++|+||||||+||||+||||||++|++.+|++|++||++||+|+|+|+|+|++||++|||||+|+
T Consensus 71 ~H~v~~E~~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~~~~vPetv~V~l~G~l~~gV~aKDviL~li 150 (380)
T cd01585 71 CHQVHLERFAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPMPKVVGVRLTGELPPWVTAKDVILELL 150 (380)
T ss_pred eeeecHhhccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCeEeccCCcEEEEEEEccCCCCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCcccEEEEEeCCcccccCccccccccccccccccccccccccchhhcccCCCccccccCCCccccccccccccc
Q psy3833 295 GILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGAT 374 (1087)
Q Consensus 295 g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (1087)
+.|+++|++|++|||+|||+++||+++|||||||
T Consensus 151 ~~lg~~g~~~~~iEf~G~~i~~Ls~~~R~Tl~NM---------------------------------------------- 184 (380)
T cd01585 151 RRLTVKGGVGKIFEYTGPGVATLSVPERATITNM---------------------------------------------- 184 (380)
T ss_pred HHhCcccccceEEEEeCCcccccCHHHHhhhhcc----------------------------------------------
Confidence 9999999999999999999999999999999999
Q ss_pred cccccccccccccccccCCCCcccccccccCceeecccCcHHHHHHHHhcCChHHHHHHHHhhccCCCCCCCcccEEEEE
Q psy3833 375 TSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAKEAMKYQSLLTPDEGAKYDQLIEL 454 (1087)
Q Consensus 375 ~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL~~~~r~~~~~~~~~~~~~l~aD~dA~Y~~viei 454 (1087)
++|+||++++||+|++|++||+.++|.+ . +..+.+|+||.|+++++|
T Consensus 185 --------------------------a~E~GA~~gi~~~De~t~~yl~~~gr~~------~-~~~l~~D~~a~Y~~~i~i 231 (380)
T cd01585 185 --------------------------GAELGATTSIFPSDERTREFLAAQGRED------D-WVELAADADAEYDEEIEI 231 (380)
T ss_pred --------------------------ccccCceEEEecCcHHHHHHHHhcCCch------h-ccccCCCCCCceEEEEEE
Confidence 8999999999999999999999998753 2 346899999999999999
Q ss_pred eCCCCccccccCCCCCccccccccchhhhhCCCccceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEecCc
Q psy3833 455 DLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGS 534 (1087)
Q Consensus 455 DLs~ieP~vA~P~~Pd~v~~lse~~~~~~~~g~~~~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS 534 (1087)
|||+|||+||+|++|||++||+|+++. +||+||||||||+|++||++||+|||+ +++++.||++|+|+|
T Consensus 232 Dls~leP~va~P~~pd~v~pv~~~~g~--------~Id~~~IGSCTngr~eDl~~aA~iLkG---~kv~~~V~~~v~P~S 300 (380)
T cd01585 232 DLSELEPLIARPHSPDNVVPVREVAGI--------KVDQVAIGSCTNSSYEDLMTVAAILKG---RRVHPHVSMVVAPGS 300 (380)
T ss_pred EcccceeeecCCCCCCceeEhhhhCCc--------eEEEEEEecCCCCCcHHHHHHHHHHcC---CCCCCCceEEEECCC
Confidence 999999999999999999999999863 799999999999999999999999997 799999999999999
Q ss_pred HHHHHHHHHcChHHHHHhcCcEEecCCccccccCCCcccccCCcceeEEeecCCCCCCCCCCCCCcceeecCHHHHHHHH
Q psy3833 535 EQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALA 614 (1087)
Q Consensus 535 ~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~v~~g~~~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvAAsA 614 (1087)
++|+++|+++|++++|.++||+|.+||||+|+|+++. +.+|+ ++|||+||||+|||| ++.+++|||||++|||+|
T Consensus 301 ~~V~~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~--~~~ge--~~vsT~NRNF~GRmG-~~~~~~yLaSP~~vaAsA 375 (380)
T cd01585 301 KQVLEMLARNGALADLLAAGARILESACGPCIGMGQA--PPTGG--VSVRTFNRNFEGRSG-TKDDLVYLASPEVAAAAA 375 (380)
T ss_pred HHHHHHHHHCCcHHHHHHcCCEEeCCCceeccCCCCC--CCCCc--EEEEccCCCCCccCC-CCCCcEEeCCHHHHHHHH
Confidence 9999999999999999999999999999999999653 44554 799999999999998 567899999999999999
Q ss_pred HhCcc
Q psy3833 615 IKGTL 619 (1087)
Q Consensus 615 iaG~I 619 (1087)
++|+|
T Consensus 376 i~G~i 380 (380)
T cd01585 376 LTGVI 380 (380)
T ss_pred hCccC
Confidence 99987
No 29
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=4.1e-110 Score=939.08 Aligned_cols=378 Identities=31% Similarity=0.535 Sum_probs=358.0
Q ss_pred ccccccchhhHHHHHHHHcCCCcccCCcee--eecccccccCCCchhHHHHhhhhHHHHHHHHHHHHhcCceecCC-CCc
Q psy3833 137 RVAMQDATAQMAMLQFISSGLPRVAVPSTI--HCDHLIEAQVGGVEDLKRAKSQNEEVYAFLRSAGAKYGVGFWHP-GSG 213 (1087)
Q Consensus 137 ~v~~qD~Tg~~a~~~~~~~g~~~v~~p~~~--~~DH~v~a~~~~~~d~~~~~~~n~e~~~fl~~~~~~~Gi~~~~p-G~G 213 (1087)
++++||.|+|+++..|+++|.+++++|+++ ++||++|+. |. .+.+.++++++|+++|||.++++ |+|
T Consensus 1 ~~~~hD~t~p~a~~~~~~~g~~~v~dp~k~~~~~DH~vp~~-----~~-----~~~~~~~~~r~~a~~~gi~~~~~~g~G 70 (382)
T cd01583 1 LHLVHDVTSPQAFEGLREAGREKVWDPEKIVAVFDHNVPTP-----DI-----KAAEQVKTLRKFAKEFGINFFDVGRQG 70 (382)
T ss_pred CEEEEeccHHHHHHHHHHhCCcccCCCCceEEEcCCCCCCC-----CH-----HHHHHHHHHHHHHHHhCcccccCCCCC
Confidence 589999999999999999999889999865 799999985 33 24578999999999999999999 999
Q ss_pred ceeeecccc-cccCCCeEecCCCCccCccccceeeccccHHHHHHHHhcCceEeecCcEEEEEEECcCCCCcchhHHHHH
Q psy3833 214 IIHQIILEN-YAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILK 292 (1087)
Q Consensus 214 IiHqv~lE~-~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~ 292 (1087)
||||+++|+ +++||++++|+||||||+||||+||||+|++|++.+|+||++|+++||+|+|+|+|+|++|||+|||||+
T Consensus 71 I~H~v~~E~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~vPeti~v~l~G~l~~gV~aKDviL~ 150 (382)
T cd01583 71 ICHVILPEKGLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRVPETMRVNVEGKLPPGVTAKDVILY 150 (382)
T ss_pred EeeEEeccccEecCCcEEEecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeCCcEEEEEEEeecCCCcCHHHHHHH
Confidence 999999998 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCcccEEEEEeCCcccccCccccccccccccccccccccccccchhhcccCCCccccccCCCccccccccccc
Q psy3833 293 VAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIG 372 (1087)
Q Consensus 293 i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~ 372 (1087)
|++.|+++|++|++|||+||||++||+++|||||||
T Consensus 151 ii~~lg~~g~~g~~vEf~G~~v~~Ls~~~R~Ti~NM-------------------------------------------- 186 (382)
T cd01583 151 IIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNM-------------------------------------------- 186 (382)
T ss_pred HHHHhccCCccceEEEEEcCccccCCHHHHhhHhcc--------------------------------------------
Confidence 999999999999999999999999999999999999
Q ss_pred cccccccccccccccccccCCCCcccccccccCceeecccCcHHHHHHHHhcCChHHHHHHHHhhccCCCCCCCcccEEE
Q psy3833 373 ATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAKEAMKYQSLLTPDEGAKYDQLI 452 (1087)
Q Consensus 373 ~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL~~~~r~~~~~~~~~~~~~l~aD~dA~Y~~vi 452 (1087)
++|+||++++||+|++|++||+.|+|+. +..+++|+||+|++++
T Consensus 187 ----------------------------a~E~GA~~gi~~~De~t~~yL~~~~~~~--------~~~~~~D~~a~Y~~~~ 230 (382)
T cd01583 187 ----------------------------AIEAGAKAGIVAPDETTFEYLKGRGKAY--------WKELKSDEDAEYDKVV 230 (382)
T ss_pred ----------------------------ccccCceEEEecCChHHHHHHHhcCccc--------hhhcCCCCCCCEEEEE
Confidence 8999999999999999999999998762 3468899999999999
Q ss_pred EEeCCCCccccccCCCCCccccccccchhhhhCCCccceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEec
Q psy3833 453 ELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTP 532 (1087)
Q Consensus 453 eiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~~g~~~~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~P 532 (1087)
+|||++|||+||+|++|||++||+|+.+. +||+||||||||+|++||++||+|||+ ++++++||++|+|
T Consensus 231 ~iDls~leP~va~P~~P~nv~~v~e~~~~--------~Id~v~IGSCTNgr~eDl~~AA~iLkG---~kv~~~Vr~~v~P 299 (382)
T cd01583 231 EIDASELEPQVAWPHSPDNVVPVSEVEGI--------KIDQVFIGSCTNGRLEDLRAAAEILKG---RKVADGVRLIVVP 299 (382)
T ss_pred EEEcccceeeEecCCCccceEECcccCCc--------ceeEEEEeccCCCChHHHHHHHHHhcC---CCCCCCccEEEEC
Confidence 99999999999999999999999999863 799999999999999999999999997 7999999999999
Q ss_pred CcHHHHHHHHHcChHHHHHhcCcEEecCCccccccCCCcccccCCcceeEEeecCCCCCCCCCCCCCcceeecCHHHHHH
Q psy3833 533 GSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTA 612 (1087)
Q Consensus 533 gS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~v~~g~~~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvAA 612 (1087)
+|++|+++|+++|++++|.+|||+|..||||+|+|++.+ .+.+|+ ++|||+||||+|||| ++.+++|||||++|||
T Consensus 300 ~S~~V~~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g-~~~~ge--~~vsT~NRNF~GRmG-~~~~~~yLaSP~~vAA 375 (382)
T cd01583 300 ASQRVYKQAEKEGLIEIFIEAGAEVRPPGCGACLGGHMG-VLAPGE--RCVSTSNRNFKGRMG-SPGARIYLASPATAAA 375 (382)
T ss_pred CCHHHHHHHHHCCcHHHHHHCCCEEeCCCcccccCCCCC-cCCCCC--EEEEecCCCCCcCCC-CCCCcEEECCHHHHHH
Confidence 999999999999999999999999999999999999865 466666 799999999999999 4678999999999999
Q ss_pred HHHhCcc
Q psy3833 613 LAIKGTL 619 (1087)
Q Consensus 613 sAiaG~I 619 (1087)
+||+|+|
T Consensus 376 sAi~G~i 382 (382)
T cd01583 376 SAITGEI 382 (382)
T ss_pred HHhcccC
Confidence 9999986
No 30
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=8.5e-109 Score=950.80 Aligned_cols=427 Identities=35% Similarity=0.588 Sum_probs=350.4
Q ss_pred chhhhccc------c-ccCCCceeccccccccccchhhHHHHHHHHcCCCcccCCc--eeeecccccccCCCchhHHHHh
Q psy3833 116 TLADSSYE------A-EQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPS--TIHCDHLIEAQVGGVEDLKRAK 186 (1087)
Q Consensus 116 TLAdKg~E------~-VrpGe~V~l~~d~v~~qD~Tg~~a~~~~~~~g~~~v~~p~--~~~~DH~v~a~~~~~~d~~~~~ 186 (1087)
||++|.++ . .+++++|.++||++++||.|||+++.+|+++|.+ ++.|. ++++||++|+...+..+++.+.
T Consensus 1 Tl~EKI~~~h~~~~~~~~~~~~v~i~~D~~l~hD~Tgp~a~~~l~~~g~~-v~~p~~v~~~~DH~vp~~~~~~~~~~~~~ 79 (465)
T PF00330_consen 1 TLAEKILARHAGREVVARGGDIVYIRPDRVLLHDITGPPAFKDLRAMGEK-VRDPDKVVLVIDHSVPADDIGSANLQIED 79 (465)
T ss_dssp -HHHHHHHCCCTHCCHTTTTSEEEE--SEEEEEHHHHHHHHHHHHHHCHC-CHSTTSEEEE--SS--BSS-HHHHHHHHH
T ss_pred ChHHHHHHHHhCCCccCCCCeEEEEEeceEEeecccCcccchhHHHCCCc-eecCCCceEEecCccccccccchhcchhh
Confidence 56666542 2 4678999999999999999999999999999864 66665 4589999999876666777778
Q ss_pred hhhHHHHHHHHHHHHhcCceecCCCC-cceeeecccc-cccCCCeEecCCCCccCccccceeeccccHHHHHHHHhcCce
Q psy3833 187 SQNEEVYAFLRSAGAKYGVGFWHPGS-GIIHQIILEN-YAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPW 264 (1087)
Q Consensus 187 ~~n~e~~~fl~~~~~~~Gi~~~~pG~-GIiHqv~lE~-~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g~~ 264 (1087)
.+|+++++|++|++++||+.+++||. |||||+++|+ +++||++++|+||||||+||||+||||||++|++.+|+||++
T Consensus 80 ~~n~~~~~~l~~~~~~~gi~~~~~~~~GI~Hqv~~E~g~~~PG~~vvg~DSHT~t~GalGa~a~GvG~td~a~~l~tg~~ 159 (465)
T PF00330_consen 80 ARNRERYRFLRWFAKEFGIKFFDPGGPGICHQVLPEEGLVLPGMTVVGTDSHTCTYGALGAFATGVGSTDVAAALATGPL 159 (465)
T ss_dssp HHCHHHHHHHHHHHHHCTTEEEETTSSBSHHHHHHHHTT-STTEEEEESSTTGGGGGGGTSEEEE--HHHHHHHHCTSBE
T ss_pred HHHHHHHHHHHHHHHHcCCceecCCCCCeeeeeehhhccccceeEEEeCCCCcchhhhceeEEeccCHHHHHHHHHhhhh
Confidence 88999999999999999999888887 9999999999 999999999999999999999999999999999999999999
Q ss_pred EeecCcEEEEEEECcCCCCcchhHHHHHHHHHhcccCcccEEEEEeCCcccccCccccccccccccccccccccccccch
Q psy3833 265 ELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKR 344 (1087)
Q Consensus 265 ~l~vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~~~ 344 (1087)
||++||+|+|+|+|+|++|||+|||||+|++.|+++|++|++|||+||||++||+++|||||||
T Consensus 160 ~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~~~~vEf~G~~v~~Ls~~~R~Ti~NM---------------- 223 (465)
T PF00330_consen 160 WFRVPETVRVELTGKLPPGVTAKDVILHIIGRLGADGATGKAVEFFGPGVESLSMDDRMTICNM---------------- 223 (465)
T ss_dssp EEE--EEEEEEEES---TT--HHHHHHHHHHHHHCCTTTTEEEEEESGGGGGS-HHHHHHHHHC----------------
T ss_pred ccccCceEEEEEEecCCCCccHHHHHHHHHHhhhhhccCCeEEEEEChhhhhcCHhhhhhhhcc----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCccccccCCCccccccccccccccccccccccccccccccCCCCcccccccccCceeecccCcHHHHHHHHhc
Q psy3833 345 INEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKAT 424 (1087)
Q Consensus 345 v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL~~~ 424 (1087)
++|+||++++||+|++|++||+.|
T Consensus 224 --------------------------------------------------------a~E~GA~~g~~~~De~t~~Yl~~~ 247 (465)
T PF00330_consen 224 --------------------------------------------------------AIEMGAKTGIFPPDEKTLEYLRGR 247 (465)
T ss_dssp --------------------------------------------------------GGHHTBSEEEE-B-HHHHHHHHHT
T ss_pred --------------------------------------------------------ccccCceEEEecCcHHHHHHHHhh
Confidence 899999999999999999999999
Q ss_pred CChHH---HHHHHHhhccCCCCCCCcccEEEEEeCCCCccccccCCCCCccccccccchhhhh-----------------
Q psy3833 425 LREDI---AKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKK----------------- 484 (1087)
Q Consensus 425 ~r~~~---~~~~~~~~~~l~aD~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~----------------- 484 (1087)
+|.+. ++.+..+++.|.+|+||.|+++|+|||++|||+||+|++|||++||+|+...+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~l~~D~dA~Y~~~i~iDls~leP~va~P~~P~~~~~v~e~~~~~~~~~~~v~~~~~~kal~y~ 327 (465)
T PF00330_consen 248 GRSPEGEELDEAYAKWQGLKSDPDAEYDKVIEIDLSELEPQVAGPHSPDNVVPVSEVAPDFASILDPVEREAAEKALDYM 327 (465)
T ss_dssp THHHHHHHHHHHHHHHGCSS--TT---SEEEEEEGGG-SSEEE-SSSTTSEEEHHHHHHHHHHHH----CCGCC-EEEEC
T ss_pred hhhhHHHHHHHhhhhhhhccCCCccCeeEEEEEEcCccccccccCCCCcccccccccccccccccccccccccccccccc
Confidence 98764 2222234567899999999999999999999999999999999999998765431
Q ss_pred CCCc------cceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCcEEe
Q psy3833 485 NGWP------MDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVL 558 (1087)
Q Consensus 485 ~g~~------~~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~ 558 (1087)
..+| .+||+||||||||+|++||++||.||++...++++++++++|+|||++|+++|+++|++++|.++||+|.
T Consensus 328 ~~~~~~~~~~~~i~~~~IgSCTn~~~~dl~~aA~il~~~~~~~v~~~v~~~v~PgS~~v~~~~~~~Gl~~~l~~aG~~v~ 407 (465)
T PF00330_consen 328 GLKPGQELEGTKIDQAFIGSCTNGRNEDLRAAAGILKGKAVLKVAPGVKTSVVPGSRQVYEQLEREGLLEILEEAGFEVR 407 (465)
T ss_dssp HTTEEEEEETTBEEEEEEETTTSCTHHHHHHHHHHHHHHHCTTS-TSSEEEEE-SBHHHHHHHHHTTHHHHHHHTTEEE-
T ss_pred cccccccccceeeeEEEEcCCcCCCHHHHHHHHHHhhchhhccCcceeEEEEcCCCHHHHHHHHHcCCchhhhccceEEe
Confidence 1222 4799999999999999999999999998544699999999999999999999999999999999999999
Q ss_pred cCCccccccCCCc-ccccCCcceeEEeecCCCCCCCCCCCCCcceeecCHHHHHHHHHhC
Q psy3833 559 ANACGPCIGQWNR-KDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAIKG 617 (1087)
Q Consensus 559 ~pGCg~CiG~~~~-~~v~~g~~~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvAAsAiaG 617 (1087)
+||||+|+|+++. +.+++ .++++|||+||||+||||++ ...+||+||++|||+||+|
T Consensus 408 ~~gC~~C~G~~~~~~~~~~-~~~~~vst~NRNF~GR~g~~-~~~~yLaSP~~vaA~Ai~G 465 (465)
T PF00330_consen 408 GPGCGPCIGMSGLPDVLAP-LGEVCVSTSNRNFEGRMGPK-DATVYLASPATVAASAIAG 465 (465)
T ss_dssp -SSSGGGGTSBS--CCHCC-TTEEEEESSSS-CTTTTTTT-TTEEEE--HHHHHHHHHHS
T ss_pred cCCccEEECCCCCCccccc-ccceEEEecCCCCCCCCCCC-cCeEEECCHHHHHHHHhcC
Confidence 9999999999842 22433 24479999999999999964 4567999999999999998
No 31
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=1.7e-103 Score=894.07 Aligned_cols=388 Identities=21% Similarity=0.294 Sum_probs=348.2
Q ss_pred cccCCCceeccccccccccchhhHHHHHHHHcCCCcccCCcee--eecccccccCCCchhHHHHhhhhHHHHHHHHHHHH
Q psy3833 124 AEQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTI--HCDHLIEAQVGGVEDLKRAKSQNEEVYAFLRSAGA 201 (1087)
Q Consensus 124 ~VrpGe~V~l~~d~v~~qD~Tg~~a~~~~~~~g~~~v~~p~~~--~~DH~v~a~~~~~~d~~~~~~~n~e~~~fl~~~~~ 201 (1087)
.|++|++|++++|++++||.|||+++++|+++|. ++++|+++ ++||++|+. |.+ +.+.++++|+|++
T Consensus 14 ~v~~G~~v~~~vD~~~~~D~t~p~~~~~f~~~~~-~v~d~~~~v~~~DH~~p~~-----~~~-----~a~~~~~~r~fa~ 82 (436)
T cd01581 14 GVRPGTYCEPKMTTVGSQDTTGPMTRDELKELAC-LGFSADLVMQSFCHTAAYP-----KPV-----DVKTHRTLPDFIS 82 (436)
T ss_pred CCCCCCEEEEEcCEEEeeccchHHHHHHHHHcCC-cccCCccEEEEcCCCCCCC-----CHH-----HHHHHHHHHHHHH
Confidence 4889999999999999999999999999999987 79999875 699999874 343 3467999999999
Q ss_pred hcCceecCCCCcceeeecccccccCCCeEecCCCCccCccccceeeccccHHHHHHHHhcCceEeecCcEEEEEEECcCC
Q psy3833 202 KYGVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLK 281 (1087)
Q Consensus 202 ~~Gi~~~~pG~GIiHqv~lE~~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g~~~l~vPe~V~V~l~G~l~ 281 (1087)
+||+.||+||+|||||++.| +++||++++||||||||+|| ||||+|++|++.+|++|++||+|||+|+|+|+|+|+
T Consensus 83 ~~gi~~~~~g~GI~Hqv~~e-~~~PG~~ivGtDSHT~t~ga---~a~GvG~td~a~~latG~~w~~vPeti~V~l~G~l~ 158 (436)
T cd01581 83 NRGGVALRPGDGVIHSWLNR-MLLPDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQ 158 (436)
T ss_pred HcCCcEECCCCCeeeeeehh-hccCCceEEeeccccCCCCc---eEEeecHHHHHHHHHhCeeeeeCCCEEEEEEecccC
Confidence 99999999999999999766 69999999999999999987 899999999999999999999999999999999999
Q ss_pred CCcchhHHHHHH----HHH--------hcccCcccEEEEEeCCcccccCccccccccccccccccccccccccchhhccc
Q psy3833 282 GWTSSKDVILKV----AGI--------LTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYH 349 (1087)
Q Consensus 282 ~gVt~kDviL~i----~g~--------L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~~~v~~y~ 349 (1087)
+||++|||||+| ++. ++++|++|++|||.| +++||+++|||||||
T Consensus 159 ~gV~aKDviL~i~~~li~~g~l~v~~~~g~~g~~g~~iEf~G--v~~Ls~~~R~Ti~NM--------------------- 215 (436)
T cd01581 159 PGITLRDLVNAIPYYAIQQGLLTVEKKGKKNVFNGRILEIEG--LPDLKVEQAFELTDA--------------------- 215 (436)
T ss_pred CCcChhHHHHHHHHHHHhcccccccccCCcccccceEEEECC--cccCCHhHHHHHHhh---------------------
Confidence 999999999984 555 444556999999976 999999999999999
Q ss_pred CCCccccccCCCccccccccccccccccccccccccccccccCCCCcccccccccCceeecccCcHHH-HHHHHhc----
Q psy3833 350 GPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRM-YDFLKAT---- 424 (1087)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t-~~yL~~~---- 424 (1087)
++|+||++|+||+|++| ++||+.+
T Consensus 216 ---------------------------------------------------a~E~GA~~gif~~De~t~~~yL~~~~~~~ 244 (436)
T cd01581 216 ---------------------------------------------------SAERSAAACTVRLDKEPVIEYLESNVVLM 244 (436)
T ss_pred ---------------------------------------------------hhhhCceEEEecCCHhHHHHHHHhCcccc
Confidence 88999999999999987 8999986
Q ss_pred ------CChH------HHHHHHHhh---ccCCCCCCCcccEEEEEeCCCC-ccccccCCCCCccccccccchhhhhCCCc
Q psy3833 425 ------LRED------IAKEAMKYQ---SLLTPDEGAKYDQLIELDLNTL-EPHVNGPFTPDLAHPINKLGEAAKKNGWP 488 (1087)
Q Consensus 425 ------~r~~------~~~~~~~~~---~~l~aD~dA~Y~~vieiDLs~i-eP~vA~P~~Pd~v~~lse~~~~~~~~g~~ 488 (1087)
+|.. ..+..++|. .++.+|+||+|++++|||||+| ||+||+|++|||++|++|+.+.
T Consensus 245 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~D~da~Y~~~ieiDls~l~eP~VA~P~~pdn~~~v~e~~g~------- 317 (436)
T cd01581 245 KIMIANGYDDARTLLRRIIAMEEWLANPPLLEPDADAEYAAVIEIDLDDIKEPILACPNDPDDVKLLSEVAGK------- 317 (436)
T ss_pred ccccccCcccccchhHHHHHHHHHHhhcccccCCCCCceEEEEEEEhHhCCCCeecCCCChhhceEhHHhcCC-------
Confidence 4321 111222221 3688999999999999999999 9999999999999999999863
Q ss_pred cceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCccccccC
Q psy3833 489 MDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQ 568 (1087)
Q Consensus 489 ~~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~ 568 (1087)
+||++||||||| |++||++||+|||+ +++ +++|++|+|+|++|+++|+++|++++|.+|||+|..||||+|+|+
T Consensus 318 -~id~~~IGSCTn-r~eDl~~AA~ilkg---~~~-~~vr~~v~P~S~~V~~~~~~~G~~~~l~~aGa~v~~pgCg~C~G~ 391 (436)
T cd01581 318 -KIDEVFIGSCMT-NIGHFRAAAKILRG---KEF-KPTRLWVAPPTRMDWAILQEEGYYSIFGDAGARTEMPGCSLCMGN 391 (436)
T ss_pred -ccceEEEecCCC-CHHHHHHHHHHHcC---CCC-CCCCEEEECCCHHHHHHHHHcChHHHHHHcCCEECCCccccccCc
Confidence 799999999999 89999999999998 344 569999999999999999999999999999999999999999999
Q ss_pred CCcccccCCcceeEEeecCCCCCCCCCCCCCcceeecCHHHHHHHHHhCcc
Q psy3833 569 WNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAIKGTL 619 (1087)
Q Consensus 569 ~~~~~v~~g~~~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvAAsAiaG~I 619 (1087)
++ .+.+|+ ++|||+||||+||||. ++++|||||++|||+||+|+|
T Consensus 392 ~~--~~~~ge--v~vsT~NRNF~GRmG~--~~~~yLaSP~~vAAsAi~G~i 436 (436)
T cd01581 392 QA--RVADGA--TVFSTSTRNFDNRVGK--GAEVYLGSAELAAVCALLGRI 436 (436)
T ss_pred CC--cCCCCC--EEEEecCCCCCCCCCC--CCcEEECCHHHHHHHHhCccC
Confidence 54 366666 6999999999999994 689999999999999999986
No 32
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=1.6e-101 Score=861.35 Aligned_cols=353 Identities=33% Similarity=0.532 Sum_probs=330.1
Q ss_pred ccccccchhhHHHHHHHHcCCCcccCCcee--eecccccccCCCchhHHHHhhhhHHHHHHHHHHHHhcCceecCCCCcc
Q psy3833 137 RVAMQDATAQMAMLQFISSGLPRVAVPSTI--HCDHLIEAQVGGVEDLKRAKSQNEEVYAFLRSAGAKYGVGFWHPGSGI 214 (1087)
Q Consensus 137 ~v~~qD~Tg~~a~~~~~~~g~~~v~~p~~~--~~DH~v~a~~~~~~d~~~~~~~n~e~~~fl~~~~~~~Gi~~~~pG~GI 214 (1087)
.+++||.|+|+++. |.++|.++|++|+++ +.||++|+.. .+ +.+.++++|+|+++|||+||+||+||
T Consensus 1 ~~~~hd~t~p~~~~-~~~~g~~~v~~p~~~~~~~DH~vp~~~-----~~-----~~~~~~~lr~~ak~~gi~~~~~g~GI 69 (363)
T cd01582 1 HCMTHDNSWPVALK-FMSIGATKIHNPDQIVMTLDHDVQNKS-----EK-----NLKKYKNIESFAKKHGIDFYPAGRGI 69 (363)
T ss_pred CeeEEeCcHHHHHH-HHHcCCCccCCCCCEEEEcCCCCCCCC-----HH-----HHHHHHHHHHHHHHhCCeEECCCCCE
Confidence 37899999999888 889998999999865 5699998753 22 34789999999999999999999999
Q ss_pred eeeecccc-cccCCCeEecCCCCccCccccceeeccccHHHHHHHHhcCceEeecCcEEEEEEECcCCCCcchhHHHHHH
Q psy3833 215 IHQIILEN-YAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKV 293 (1087)
Q Consensus 215 iHqv~lE~-~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i 293 (1087)
|||+++|+ +++||++++|+||||||+||||+||||||++|++.+|++|+.|+++||+|+|+|+|+|++||++|||||+|
T Consensus 70 ~Hqv~~E~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~~~tG~~w~~vPe~i~v~l~G~l~~gV~aKDviL~l 149 (363)
T cd01582 70 GHQIMIEEGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIPPVAKVELKGQLPKGVTGKDVIVAL 149 (363)
T ss_pred EEEeccccCccCCCeEEEecCCCccccccchheEeccCHHHHHHHHHhCCeeecCCCEEEEEEecccCCCCCHHHHHHHH
Confidence 99999996 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCcccEEEEEeCCcccccCccccccccccccccccccccccccchhhcccCCCccccccCCCcccccccccccc
Q psy3833 294 AGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGA 373 (1087)
Q Consensus 294 ~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (1087)
+++|+++|++|++|||+|||+++||+++|||||||
T Consensus 150 i~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NM--------------------------------------------- 184 (363)
T cd01582 150 CGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANM--------------------------------------------- 184 (363)
T ss_pred HHHhCcCCceeEEEEEECCccccCCHHHHhhHHhc---------------------------------------------
Confidence 99999999999999999999999999999999999
Q ss_pred ccccccccccccccccccCCCCcccccccccCceeecccCcHHHHHHHHhcCChHHHHHHHHhhccCCCCCCCcccEEEE
Q psy3833 374 TTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAKEAMKYQSLLTPDEGAKYDQLIE 453 (1087)
Q Consensus 374 ~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL~~~~r~~~~~~~~~~~~~l~aD~dA~Y~~vie 453 (1087)
++|+||++++||+| +++++
T Consensus 185 ---------------------------a~E~GA~~~i~~~D----------------------------------~~~~~ 203 (363)
T cd01582 185 ---------------------------TTEWGALSGLFPTD----------------------------------AKHLI 203 (363)
T ss_pred ---------------------------ccccCcceeEeccC----------------------------------ceEEE
Confidence 89999999999988 77999
Q ss_pred EeCCCCccccccCCCCCccccccccchhhhhCCCccceeEEEEeccCCCChHHHHHHHHHHHHhHhCC-------CCCCC
Q psy3833 454 LDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAHG-------LKSST 526 (1087)
Q Consensus 454 iDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~~g~~~~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~-------~~~~v 526 (1087)
||||+|||+||+|++|||+.|++++... + .+||+||||||||+|++||++||+|||+ ++ +++.|
T Consensus 204 iDls~leP~va~P~~p~~~~~~~~~~~~----~--~~id~~~IGSCTngr~~Dl~~aA~il~g---k~~~~~~~~v~~~V 274 (363)
T cd01582 204 LDLSTLSPYVSGPNSVKVSTPLKELEAQ----N--IKINKAYLVSCTNSRASDIAAAADVVKG---KKEKNGKIPVAPGV 274 (363)
T ss_pred EEcccceeeeeCCCCCCCcCCHHHhhhc----C--ceEeEEEEEcCCCCChHHHHHHHHHHhC---ccccccCcccCCCc
Confidence 9999999999999999999999998521 2 3699999999999999999999999997 44 88889
Q ss_pred CEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCccccccCCCcccccCCcceeEEeecCCCCCCCCCCCCCcceeecC
Q psy3833 527 PFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTS 606 (1087)
Q Consensus 527 ~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~v~~g~~~~~vsT~NRNF~gR~G~~p~~~~yLaS 606 (1087)
|++|+|+|++|+++|+++|++++|.+|||+|..||||+|+|++.+ .+++|+ ++|||+||||+|||| ++.+++||||
T Consensus 275 r~~v~PgS~~V~~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~-~~~~ge--~~vsT~NRNF~GR~G-~~~~~~yLaS 350 (363)
T cd01582 275 EFYVAAASSEVQAAAEKNGDWQTLLEAGATPLPAGCGPCIGLGQG-LLEPGE--VGISATNRNFKGRMG-STEALAYLAS 350 (363)
T ss_pred eEEEeCCCHHHHHHHHHcCcHHHHHHCCCEEECCCCeeccCCCCC-CCCCCC--EEEEecCCCCCcCCC-CCCCcEEECC
Confidence 999999999999999999999999999999999999999999876 456666 689999999999998 5678999999
Q ss_pred HHHHHHHHHhCcc
Q psy3833 607 PELVTALAIKGTL 619 (1087)
Q Consensus 607 p~lvAAsAiaG~I 619 (1087)
|++|||+||+|+|
T Consensus 351 P~~vaAsAi~G~i 363 (363)
T cd01582 351 PAVVAASAISGKI 363 (363)
T ss_pred HHHHHHHHhCccC
Confidence 9999999999986
No 33
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=2e-100 Score=858.09 Aligned_cols=362 Identities=35% Similarity=0.562 Sum_probs=328.0
Q ss_pred ccccccchhhHHHHHHHH-------cCCC----cccCCceeeecccccccCCCch-----hHHHHhhhhHHHHHHHHHHH
Q psy3833 137 RVAMQDATAQMAMLQFIS-------SGLP----RVAVPSTIHCDHLIEAQVGGVE-----DLKRAKSQNEEVYAFLRSAG 200 (1087)
Q Consensus 137 ~v~~qD~Tg~~a~~~~~~-------~g~~----~v~~p~~~~~DH~v~a~~~~~~-----d~~~~~~~n~e~~~fl~~~~ 200 (1087)
||+|||+||.+++.+|++ .|.+ ...+|..+|+||+++.+..+.. ++..+.++|.|+|.|++|++
T Consensus 1 Rv~~~D~tg~p~lvDlaa~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~~~~~~~~~~~~~~~~~N~e~~~~~~~~~ 80 (404)
T cd01586 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLKWGQ 80 (404)
T ss_pred CccceecCCccHHHhHHHHHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCccccCHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 799999999999999875 3443 2367889999999999866544 45677889999999999999
Q ss_pred HhcC-ceecCCCCcceeeecccc--------------cccCCCeEecCCCCccCccccceeeccccHHHHHHHHhcCceE
Q psy3833 201 AKYG-VGFWHPGSGIIHQIILEN--------------YAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWE 265 (1087)
Q Consensus 201 ~~~G-i~~~~pG~GIiHqv~lE~--------------~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g~~~ 265 (1087)
++|| +.+++||+|||||+++|+ +++|| +++|+||||||+||||+||||||++|++.+|++|++|
T Consensus 81 ~~~~~~~~~~pg~GI~Hqv~~E~~a~~~~~~~~~~~g~~~P~-~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~~ 159 (404)
T cd01586 81 KAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAYPD-SVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPIS 159 (404)
T ss_pred HHhCCCCCCCCCCCEeeeehhhhcccceeecccCCCceEeee-eEeecCCCCccCCcccceEecccHHHHHHHHhCCccc
Confidence 9997 999999999999999883 67786 6999999999999999999999999999999999999
Q ss_pred eecCcEEEEEEECcCCCCcchhHHHHHHHHHhcccCcccEEEEEeCCcccccCccccccccccccccccccccccccchh
Q psy3833 266 LKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRI 345 (1087)
Q Consensus 266 l~vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~~~v 345 (1087)
+++||+|+|+|+|+|++|||+|||||+|++.|+++|++|++|||+|||+++||+++|||||||
T Consensus 160 ~~vP~~i~V~l~G~l~~gVtaKDviL~li~~l~~~G~~g~~iEf~G~gi~~LS~~~R~Ti~NM----------------- 222 (404)
T cd01586 160 MLLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANM----------------- 222 (404)
T ss_pred cCCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECcccccccHhHhhhhhcc-----------------
Confidence 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCccccccCCCccccccccccccccccccccccccccccccCCCCcccccccccCceeecccCcHHHHHHHHhcC
Q psy3833 346 NEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATL 425 (1087)
Q Consensus 346 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL~~~~ 425 (1087)
++|+||++++||+|
T Consensus 223 -------------------------------------------------------a~E~GA~~gif~~D----------- 236 (404)
T cd01586 223 -------------------------------------------------------APEYGATCGFFPVD----------- 236 (404)
T ss_pred -------------------------------------------------------chhhCceeeEeccC-----------
Confidence 88999999999988
Q ss_pred ChHHHHHHHHhhccCCCCCCCcccEEEEEeCCCCccccccCCCCCccccccccchhhhhCCCccceeEEEEeccCCCChH
Q psy3833 426 REDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNASYE 505 (1087)
Q Consensus 426 r~~~~~~~~~~~~~l~aD~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~~g~~~~Id~vfIGSCTn~~~~ 505 (1087)
+++|+||||+|||+||+|++|||++||.. +||+||||||||+|++
T Consensus 237 -----------------------d~~i~iDls~leP~Va~P~~Pd~v~~v~~------------~Id~v~IGSCTNgr~e 281 (404)
T cd01586 237 -----------------------TQVVELDLSTVEPSVSGPKRPQDRVPLHG------------SVVIAAITSCTNTSNP 281 (404)
T ss_pred -----------------------ceEEEEEcccceeeecCCCCcccccCcCC------------cEeEEEEEcCCCCCCH
Confidence 88999999999999999999999999932 6999999999999999
Q ss_pred HHHHHHHHH-HHhHh--CCCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCccccccCCCccc-------cc
Q psy3833 506 DMSRCASIA-KEAMA--HGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKD-------VK 575 (1087)
Q Consensus 506 dl~aAA~il-k~a~~--~~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~-------v~ 575 (1087)
|+++||.|| |+|+. +++++.||++|+|||++|+++|+++|++++|.+|||+|..||||+|+|+++. . +.
T Consensus 282 Dl~~aA~iL~~~a~~kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aGa~v~~pgCg~CiG~~g~-~~~~~~~~~~ 360 (404)
T cd01586 282 SVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRVVTKYLEASGLLPYLEKLGFHVVGYGCTTCIGNSGP-LPEEVEEAIK 360 (404)
T ss_pred HHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCChHHHHHHcCCEEcCCcchhccCCCCC-CCchhhhhcc
Confidence 999998866 44444 4556669999999999999999999999999999999999999999999853 2 45
Q ss_pred CCcce-eEEeecCCCCCCCCCCCCCcceeecCHHHHHHHHHhCcc
Q psy3833 576 MGEKN-TIVNSYNRNFTGRNDANPATHAFVTSPELVTALAIKGTL 619 (1087)
Q Consensus 576 ~g~~~-~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvAAsAiaG~I 619 (1087)
+|+.. ++|||+||||+||||+ ..+++||+||++|||+||+|+|
T Consensus 361 ~ge~~~~~vsT~NRNF~GR~G~-~~~~vyLaSP~~vAAsAi~G~i 404 (404)
T cd01586 361 ENDLVVAAVLSGNRNFEGRIHP-LVRANYLASPPLVVAYALAGTV 404 (404)
T ss_pred CCCeEEEEEeccCCCCCCCCCC-CcCceEECCHHHHHHHHhcccC
Confidence 56642 2589999999999985 4568999999999999999986
No 34
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=1.4e-98 Score=851.11 Aligned_cols=386 Identities=43% Similarity=0.660 Sum_probs=361.2
Q ss_pred ccccccchhhHHHHHHHHcCCC-cccCCcee--eecccccccCCCchhHHHHhhhhHHHHHHHHHHHHhcCceecCCCCc
Q psy3833 137 RVAMQDATAQMAMLQFISSGLP-RVAVPSTI--HCDHLIEAQVGGVEDLKRAKSQNEEVYAFLRSAGAKYGVGFWHPGSG 213 (1087)
Q Consensus 137 ~v~~qD~Tg~~a~~~~~~~g~~-~v~~p~~~--~~DH~v~a~~~~~~d~~~~~~~n~e~~~fl~~~~~~~Gi~~~~pG~G 213 (1087)
||++||.||||++.+|+++|.. ++++|+.+ +.||++|+.. . +|.+.++|+|+|+++|||.|++||+|
T Consensus 1 ~v~~hD~tgp~a~~~~~~~~~~~~v~~p~~v~~~~DH~~p~~~-----~-----~~~~~~~~lr~f~~~~gi~~~~~g~G 70 (389)
T cd01351 1 RVMLQDATGPMAMKAFEILAALGKVADPSQIACVHDHAVQLEK-----P-----VNNEGHKFLSFFAALQGIAFYRPGVG 70 (389)
T ss_pred CEEEEecchHHHHHHHHHcCCCCCCCCcccEEEEECCCCCCCC-----h-----hHHHHHHHHHHHHHHcCCcEECCCCC
Confidence 6899999999999999999987 89998764 7899998742 2 46788999999999999999999999
Q ss_pred ceeeecccccccCCCeEecCCCCccCccccceeeccccHHHHHHHHhcCceEeecCcEEEEEEECcCCCCcchhHHHHHH
Q psy3833 214 IIHQIILENYAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKV 293 (1087)
Q Consensus 214 IiHqv~lE~~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i 293 (1087)
||||+++|++++||++++|+||||+++||||++|||+|++|++++|+||++|+++|++++|+|+|+|++||++|||+|+|
T Consensus 71 i~H~~~~E~~~~pG~~i~g~DSHT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP~~~~v~l~G~l~~~V~~kDl~l~i 150 (389)
T cd01351 71 IIHQIMVENLALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKPEVVGVNLTGKLSPGVTGKDVVLKL 150 (389)
T ss_pred eECcccccccCCCCCEEEEcCcCccccCcchheEEeeeHHHHHHHHhcCceeccCCcEEEEEEecccCCCceeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCcccEEEEEeCCcccccCccccccccccccccccccccccccchhhcccCCCccccccCCCcccccccccccc
Q psy3833 294 AGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGA 373 (1087)
Q Consensus 294 ~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (1087)
++.|+.+|++|+++||.|+|+++||+++|+|||||
T Consensus 151 lg~lg~~g~~~~~~Ef~G~~~~~ls~d~r~tl~nm--------------------------------------------- 185 (389)
T cd01351 151 GGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNM--------------------------------------------- 185 (389)
T ss_pred HHHHhhcccCceEEEEECCccCCCCHHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999999999999
Q ss_pred ccccccccccccccccccCCCCcccccccccCceeecccCcHHHHHHHHhcCChHHHHHHHHhhccCCCCCCCcccEEEE
Q psy3833 374 TTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAKEAMKYQSLLTPDEGAKYDQLIE 453 (1087)
Q Consensus 374 ~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL~~~~r~~~~~~~~~~~~~l~aD~dA~Y~~vie 453 (1087)
++|+||++++||+|++|.+||+.++|++....+..++..|.+|+||+|+++|+
T Consensus 186 ---------------------------~~E~ga~~gi~p~D~~t~~yl~~~~~~~~~~~~~~~~~~l~~d~~a~y~~~i~ 238 (389)
T cd01351 186 ---------------------------MAELGATTGIFPEDKTTLKWLEATGRPLLKNLWLAFPEELLADEGAEYDQVIE 238 (389)
T ss_pred ---------------------------hHhhhheEeEeCCcHHHHHHHHhcCCchhhHHHHHHHhccCCCCCCCeeEEEE
Confidence 78999999999999999999999998764334555566789999999999999
Q ss_pred EeCCCCccccccCCCCCccccccccchhhhhCCCccceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEecC
Q psy3833 454 LDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPG 533 (1087)
Q Consensus 454 iDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~~g~~~~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~Pg 533 (1087)
|||++|||+|++|++|||++|++++.+. +||+||||||||+|++||++||+|||+ +++++++|++|+|+
T Consensus 239 iDls~lep~va~p~~p~~~~~v~~~~~~--------~Id~v~IGSCtn~~~~dl~~aA~ilkg---k~v~~~v~~~v~P~ 307 (389)
T cd01351 239 IDLSELEPDISGPNRPDDAVSVSEVEGT--------KIDQVLIGSCTNNRYSDMLAAAKLLKG---AKVAPGVRLIVTPG 307 (389)
T ss_pred EEhhhceeEEecCCChhhccChhhccCC--------ceeEEEEecCCCCCHHHHHHHHHHHcC---CcCCCCceEEEECC
Confidence 9999999999999999999999999763 699999999999999999999999997 67888999999999
Q ss_pred cHHHHHHHHHcChHHHHHhcCcEEecCCccccccCCCcccccCCcceeEEeecCCCCCCCCCCCCCcceeecCHHHHHHH
Q psy3833 534 SEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTAL 613 (1087)
Q Consensus 534 S~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~v~~g~~~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvAAs 613 (1087)
|++|+++++++|++++|+++||+|..|||++|+|++.+ .+.+|+ +++||+||||+||||. +.+++|||||++|||+
T Consensus 308 S~~v~~~a~~~Gl~~~l~~aG~~i~~~gC~~C~G~~~~-~~~~g~--~~vst~nRNF~GR~g~-~~~~~yLaSP~~vaAs 383 (389)
T cd01351 308 SRMVYATLSREGYYEILVDSGARILPPGCGPCMGNGAR-LVADGE--VGVSSGNRNFPGRLGT-YERHVYLASPELAAAT 383 (389)
T ss_pred CHHHHHHHHHcChHHHHHHCCCEEeCCCCcccCCCCCC-cCCCCc--EEEEeecCCCccccCC-CCCceEECCHHHHHHH
Confidence 99999999999999999999999999999999999875 455555 7899999999999995 4579999999999999
Q ss_pred HHhCcc
Q psy3833 614 AIKGTL 619 (1087)
Q Consensus 614 AiaG~I 619 (1087)
||+|+|
T Consensus 384 Al~G~i 389 (389)
T cd01351 384 AIAGKI 389 (389)
T ss_pred HhcCcC
Confidence 999986
No 35
>KOG3727|consensus
Probab=100.00 E-value=2.9e-52 Score=471.88 Aligned_cols=194 Identities=53% Similarity=0.917 Sum_probs=176.4
Q ss_pred hhhhcccccccccccccCceeeeecceeeeeccCccccceeeee---------------------------eecccCC-C
Q psy3833 889 PAWLDSSLSIYEQGVKEFDTLRLRFKFYSIYDLNAKTDAVQVNL---------------------------QSNVAQP-T 940 (1087)
Q Consensus 889 sr~l~ss~sl~~q~~~E~~~l~lrFkyy~f~d~n~K~d~vri~~---------------------------q~~~~~~-~ 940 (1087)
.+|||||+|+||||++|+|.+.|||||+.|||+|||||.||||| |+++... -
T Consensus 239 ~gwldSs~s~meq~~~e~d~~~lrfk~~~ffdlnpkyd~vrinqlyeqaKwsiL~ee~~~teee~~mfaalq~~~~~~~~ 318 (664)
T KOG3727|consen 239 VGWLDSSRSLMEQGIREYDTLLLRFKYFTFFDLNPKYDQVRINQLYEQAKWSILLEELDCTEEEALMFAALQFQVNHQRD 318 (664)
T ss_pred cCCchhhhHHHHccchHHHHHHHHHhhhhhhhcccccceeeccccccchhHHHHHHhhcchHHHHHHHHHHHHHHHHhhh
Confidence 46999999999999999999999999999999999999999998 2222100 0
Q ss_pred CCCCCCCchhhHHHHHhhcccccCCcccccCCCCCCCCccccccceecccccchhcccceeEEEEeceeeeeecChhhhc
Q psy3833 941 DTSSISLADDDIDAALTDLQVTLEGSHISLASPDIMHVPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQ 1020 (1087)
Q Consensus 941 ~~~~~~~~~Ddid~aL~~Lev~~eg~~~~~~~~~~~~~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~ 1020 (1087)
.+.......||+|.+|.+||++++|..... ..|+|++|+|.||+|++||||||+|+||||||.|+++.+++|||.+++.
T Consensus 319 ~~~~~~d~~dd~d~~l~el~~tl~~~~~~~-~~D~t~ipel~dy~~~~kpk~~~~Kg~kr~f~t~~dl~~~~~~s~~~s~ 397 (664)
T KOG3727|consen 319 STPPGENNEDDVDSALDELEITLEGPALGR-RGDITRIPELADYLKYLKPKKLTLKGYKRYFFTFRDLHLSLYKSSEDSR 397 (664)
T ss_pred cCCCCCCCcchhHHHHHHHHHhhhccCcCC-ccccccCCcccchhhhhchhhhhhhhhhhHHHHHHHHHHHHHhhHhhhc
Confidence 111123468999999999999999887766 8899999999999999999999999999999999999999999999999
Q ss_pred CCCCceeecCCCceecccccccCceeEEEEEecCCCCCcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1021 HSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1021 ~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
+.|...|||+||||+||||++.+||.|||++|..+||+|||||||||+|||+||||||||.|-
T Consensus 398 -~ap~~~i~l~gcev~~dV~~~~~k~~i~l~~~~~~~msEi~LRCd~E~QYA~WMAaCrLASKG 460 (664)
T KOG3727|consen 398 -GAPAISINLKGCEVTPDVNLSQQKYAIKLLVPTAEGMSEIWLRCDNEQQYARWMAACRLASKG 460 (664)
T ss_pred -CCCCCchhhcCcccCCccccccccceEEEEeecCCccceeEEecCCHHHHHHHHHHhhHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999874
No 36
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=1.5e-45 Score=366.02 Aligned_cols=149 Identities=79% Similarity=1.310 Sum_probs=144.6
Q ss_pred eecCccccccccCCCCcccccCccccccccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEEecCCCcC
Q psy3833 701 KVKGKCTTDHISAAGPWLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENYG 780 (1087)
Q Consensus 701 ~~gd~iTTDhIsPAG~~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG~nyG 780 (1087)
|++++||||||||||+||+||||+++|++|+|.++.|.++++.|.++++.+|+..++|+.|++|++.|+++|||||+|||
T Consensus 1 k~~g~~tTDhI~pag~~l~~R~~l~~is~~~~~~a~n~~~~~~~~~~~~~~g~~~~~~~~A~~yk~~g~~~iIVaG~nyG 80 (149)
T cd01578 1 KAKGKCTTDHISAAGPWLKYRGHLDNISNNLLIGAINAENGKANSVKNQVTGEYGPVPDTARDYKAHGIKWVVIGDENYG 80 (149)
T ss_pred CCCCccCcccccCCCcccccccCHHHHHHHHhhhhhhhhccccccccccCCCcccchHHHHHHHHHcCCCeEEEccCccC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecCCCCcccCCCCCEEEEccccCcCCC
Q psy3833 781 EGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRISLVGLKDLAPG 849 (1087)
Q Consensus 781 ~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l~~gD~i~I~~l~~l~pg 849 (1087)
||||||||||++++||++||||+||+|||++||+|+|||||+|+++++|+.|++||+|+|.+++++.||
T Consensus 81 ~GSSREhAa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~f~~~~~~~~i~~gd~i~i~~l~~l~pg 149 (149)
T cd01578 81 EGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYDKIHPDDKVDILGLTDFAPG 149 (149)
T ss_pred CCCchHHHHHHHHHhCCCEEEEecHHHHHHHHHHhcCCceEEecChHHHHhcCCCCEEEEecCccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998887765
No 37
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=100.00 E-value=2.1e-42 Score=327.24 Aligned_cols=105 Identities=56% Similarity=1.093 Sum_probs=103.2
Q ss_pred ccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCCCC
Q psy3833 979 PELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGM 1058 (1087)
Q Consensus 979 p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~ 1058 (1087)
|||+||||+|||||||+|+||||||+|+|++|+|||+++++. ++|+..|||+||||+|||||+++||+|+|++|+++||
T Consensus 1 p~l~~~l~~~~~~~~~~K~~KrrwF~lk~~~L~YyK~kee~~-~~p~i~lnl~gcev~~dv~~~~~kf~I~l~~ps~~~~ 79 (106)
T cd01237 1 PELADYLKYFKPKKLTLKGYKQYWFTFRDTSISYYKSKEDSN-GAPIGQLNLKGCEVTPDVNVAQQKFHIKLLIPTAEGM 79 (106)
T ss_pred CcHHHHHHHhCcchhhhhhheeEEEEEeCCEEEEEccchhcC-CCCeEEEecCceEEcccccccccceEEEEecCCccCC
Confidence 899999999999999999999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred cceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1059 SEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1059 ~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
+|+||+||||+|||+||||||||.+.
T Consensus 80 r~y~l~cdsEeqya~Wmaa~rlas~g 105 (106)
T cd01237 80 NEVWLRCDNEKQYAKWMAACRLASKG 105 (106)
T ss_pred eEEEEECCCHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999873
No 38
>KOG0454|consensus
Probab=100.00 E-value=2.7e-40 Score=366.76 Aligned_cols=368 Identities=25% Similarity=0.298 Sum_probs=248.5
Q ss_pred HHHHHHhhccCCCCCCCcccEEEEEeCCCCccccccCCCCCccccccccchh-------hhh---------CC----Cc-
Q psy3833 430 AKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEA-------AKK---------NG----WP- 488 (1087)
Q Consensus 430 ~~~~~~~~~~l~aD~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~-------~~~---------~g----~~- 488 (1087)
|+.+.+||..+.+|+.|.|+..++|..-++.|.+.|..+||++.|+.--..+ .++ .| .+
T Consensus 14 we~avaywktl~~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~vtd~i~a~~~ersL~ymGl~pnt~v 93 (502)
T KOG0454|consen 14 WESAVAYWKTLFPDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTVTDKILARASERSLVYMGLNPNTNV 93 (502)
T ss_pred hhhhhhhhhcccCcccccceeeeeccccceeeeeeecCCcccCCCcCCcCCCCcccchHHHHhhhhhceeeccCCCCccc
Confidence 5566788888999999999999999999999999999999999998753221 111 01 11
Q ss_pred --cceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCC-EEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCcccc
Q psy3833 489 --MDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTP-FNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPC 565 (1087)
Q Consensus 489 --~~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~-~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~C 565 (1087)
+.+|.||||||||.+++||+.||.|+++ +++...++ .+++|+|+.|+.+.+.+|+-++|.++||.+...||+.|
T Consensus 94 ~s~~~dkVfigsctn~riedlr~aAaVv~g---~Kia~n~k~am~vpgsglvkk~aeaegld~if~eagF~wreagcs~c 170 (502)
T KOG0454|consen 94 DSLMTDKVFIGSCTNIRIEDLREAAAVVDG---EKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIFNEAGFYWREAGCSFC 170 (502)
T ss_pred ceeeecceeccccccccHHHHhhhhhcccc---ceeEecccceEEecCchhhHhHHHHHhhHHHHHhhceehhhcccccc
Confidence 2588999999999999999999999997 68888775 79999999999999999999999999999999999999
Q ss_pred ccCCCcccccCCcceeEEeecCCCCCCCCCCCCCcceeecCHHHHHHHHHhCccccCCCCCCCCCC---CCCC-eeecCC
Q psy3833 566 IGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAIKGTLAFDPRSDTLTGS---DGKP-FKLRDP 641 (1087)
Q Consensus 566 iG~~~~~~v~~g~~~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvAAsAiaG~I~fdp~~d~L~~~---dG~~-v~l~dP 641 (1087)
.|+.. +.+...+. |-+|+||||+||+|. +++..|+||.+.+|..+.|+.. +.+..+..+. .-++ +.+..+
T Consensus 171 lgmnp-d~l~~yer--castsnRnfEgrqGa--~srThlma~s~qfAagi~~~~~-~~~~~~~k~~~~~~Ps~~l~~~g~ 244 (502)
T KOG0454|consen 171 LGMNP-DGLCHYER--CASTSNRNFEGRQGA--DSRTHLMAASMQFAAGIGGHDL-GFREFTGKDSLKVSPSPFLTLKGE 244 (502)
T ss_pred ccCCc-hhccHHHH--hhhccCCCccccccc--cccchhhhhhHHhhcccccccc-ccccccccccccCCCCceEEeCCC
Confidence 99964 34555554 679999999999996 4677799999999999999876 4333221111 0111 333332
Q ss_pred CCCCCCCCCcCCC---CccccCCCCCCCCceEecCCC-Cccc-cCCCCCCCCcccccccceeeeeecCccccccccCCCC
Q psy3833 642 FGDELPTKGFDPG---VDTYQPPPKDGSSLSVDVDPK-SQRL-QLLEPFDVWDKKDIKDMVVLIKVKGKCTTDHISAAGP 716 (1087)
Q Consensus 642 ~~~eip~~~~~~~---~~~~~~~~~~~~~v~~~~~p~-S~~l-~~l~pf~~~~~~~i~~arvLl~~gd~iTTDhIsPAG~ 716 (1087)
+..-++....... +..-..+ .+.-.+. |+.. --.++|- -+-..+.++++||+|+|++
T Consensus 245 s~sv~~~~~li~~ia~ds~t~i~-------~~at~e~~s~~sSl~m~~F~----------tLc~vv~dNiDTD~IIP~q- 306 (502)
T KOG0454|consen 245 SPSVLPAKDLIVSIATDSSTDIP-------RVATMEFSSTTSSLGMETFH----------TLCGVVADNIDTDQIIPAQ- 306 (502)
T ss_pred Cccccccccchhhhhcccccccc-------ceecccCCCccccccCccee----------eeehhhhhhCCcCcccChh-
Confidence 2222222100000 0000000 0000000 0100 0112332 1112456999999999995
Q ss_pred cccccCccccccccccccccccccCcccceEeecCCC-cCChHHHH---HHHHHcCCCcEEecCCCcCCCccchhhcccc
Q psy3833 717 WLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQ-YGPVNEVA---RAYKAAGVPWVAVGDENYGEGSSREHAALEP 792 (1087)
Q Consensus 717 ~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~-~~~ipd~A---~~yk~~g~~~IVVAG~nyG~GSSRE~Aa~~~ 792 (1087)
|++..-....+ ..+|... ..+|. ...+++|. +.|++. .|+|+|.|||||||||||+|++
T Consensus 307 fltli~~~~~~-~~~f~~~-------------~~dg~~k~~~~dFv~~vE~~~~~---siii~~DNFGCGSSREHAPv~L 369 (502)
T KOG0454|consen 307 FLTLIPSTGLI-LSCFYEV-------------ALDGLPKSFVTDFVLPVEPLRKY---SIIIGGDNFGCGSSREHAPVCL 369 (502)
T ss_pred hhcccccchhh-hhhhhhh-------------eecCCchhhccceecccccccee---EEEeccCCcccccccccCcchh
Confidence 76532111111 1111100 01111 00112221 122222 6899999999999999999999
Q ss_pred ccccceEEEEechhHHHhhhhccCccceEEecCCCCcccCCCCCEEEEc
Q psy3833 793 RHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRISLV 841 (1087)
Q Consensus 793 r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l~~gD~i~I~ 841 (1087)
.+.|+++|||.||+|||++|++..|.+|..-+...-.++...+|...+.
T Consensus 370 ~~~GakaivA~Sya~IFfrN~~atG~l~~~~s~~~v~de~~~~dv~~v~ 418 (502)
T KOG0454|consen 370 GAAGAKAIVAPSYARIFFRNSVATGELPPLPSEVRVCDECVTGDVYTVE 418 (502)
T ss_pred hhcccceecchhHHHHHHHhHHhcCCccCCCceeeecccceecceeeEE
Confidence 9999999999999999999999999988643333333456667777665
No 39
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=100.00 E-value=3.8e-36 Score=302.95 Aligned_cols=136 Identities=37% Similarity=0.584 Sum_probs=116.9
Q ss_pred eecCccccccccCCCC---------cccccC----------------------cccccc-ccccccccccccCcccceEe
Q psy3833 701 KVKGKCTTDHISAAGP---------WLKFRG----------------------HLDNIS-NNLFLTATNAENGEMNKVKN 748 (1087)
Q Consensus 701 ~~gd~iTTDhIsPAG~---------~L~~rg----------------------~~~~i~-~~~l~~~~n~~~g~~~~~~~ 748 (1087)
.+||+||||||||||. ||..+| .|+|+. .|.|.. ..+++.+++
T Consensus 1 ~lgD~iTTDHISPaG~I~~~s~ag~yL~~~gv~~~dfnsyg~rRgnhevm~RgtFan~r~~N~~~~-----~~~g~~t~~ 75 (171)
T cd01580 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLVP-----GTEGGTTHH 75 (171)
T ss_pred CCCCCccccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCceEeecccccchhhhhcccC-----CCCCCcEEE
Confidence 3799999999999984 665444 344432 222221 235789999
Q ss_pred ecCCCcCChHHHHHHHHHcCCCcEEecCCCcCCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecCCCC
Q psy3833 749 QLTGQYGPVNEVARAYKAAGVPWVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSD 828 (1087)
Q Consensus 749 ~~~G~~~~ipd~A~~yk~~g~~~IVVAG~nyG~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~ 828 (1087)
+|+|+.+++||+|++|+++|+|+|||||+|||||||||||||+++++|+++|||+||+|||++||+|+|||||+|+++.+
T Consensus 76 ~p~g~~~~i~~aA~~Yk~~g~plIIvaG~nfG~GSSRE~Aa~~~~~lGi~aVIA~SFarI~~~Nli~~Gllpl~~~~~~~ 155 (171)
T cd01580 76 PPTGEVMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESFERIHRSNLVGMGILPLQFPPGEN 155 (171)
T ss_pred CCCCcEeeHHHHHHHHHHcCCcEEEEccCcccCCCcHHHHHHHHHHhCCCEEEEccHHHHHHhhHhhcCcceEEeCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccc--CCCCCEEEEc
Q psy3833 829 YDK--IQPNDRISLV 841 (1087)
Q Consensus 829 ~~~--l~~gD~i~I~ 841 (1087)
++. |++.|.++|.
T Consensus 156 ~~~l~l~g~e~~~i~ 170 (171)
T cd01580 156 ADSLGLTGEETYDII 170 (171)
T ss_pred HHhhCCCCceeEEee
Confidence 875 5788888885
No 40
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=99.97 E-value=4.9e-33 Score=281.15 Aligned_cols=152 Identities=26% Similarity=0.299 Sum_probs=122.8
Q ss_pred eeecCccccccccCCCCcccccCccccccccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEEecCCCc
Q psy3833 700 IKVKGKCTTDHISAAGPWLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENY 779 (1087)
Q Consensus 700 l~~gd~iTTDhIsPAG~~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG~ny 779 (1087)
++++|+|+||||+|+ +||. +.+.+.++.++|.+. .|+|+++++. ++|||||+||
T Consensus 4 ~~~gdnIdTD~I~P~-~~l~-~~~~~~l~~~~f~~~---------------------~p~f~~~~~~---g~iiVaG~NF 57 (156)
T TIGR02084 4 HKYGDNVDTDVIIPA-RYLN-TSDPKELAKHCMEDL---------------------DKDFVKKVKE---GDIIVAGENF 57 (156)
T ss_pred EEcCCCccHhhccHH-HHcC-cCCHHHHHhhhhccC---------------------ChhHHhhcCC---CCEEEccCcc
Confidence 589999999999998 7886 456677777777532 3778777632 4799999999
Q ss_pred CCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecCCCCcccCCCCCEEEEccccCcCCCCcEEEEEEec
Q psy3833 780 GEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRISLVGLKDLAPGKPVTAQIKHA 859 (1087)
Q Consensus 780 G~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l~~gD~i~I~~l~~l~pg~~v~v~v~~~ 859 (1087)
|||||||||+|+++.+||+||||+||+|||++|++|+|| |+. .++++++.++.||+|+|+ + .+++ ++..+
T Consensus 58 G~GSSRE~A~~al~~~Gi~aVIA~SFarIf~rN~iN~GL-p~~-~~~~~~~~l~~gd~i~id-l----~~~~--v~~~~- 127 (156)
T TIGR02084 58 GCGSSREHAPIAIKASGISCVIAKSFARIFYRNAINIGL-PIV-ESEEAVDEIEEGDEVEVD-L----EKGI--IKNLT- 127 (156)
T ss_pred cCCCcHHHHHHHHHHhCCCEEEEehHHHHHHhhhhhCCC-Cee-cCHHHHHHhCCCCEEEEE-C----CCCE--EEEec-
Confidence 999999999999999999999999999999999999996 665 456789999999999997 3 2222 33222
Q ss_pred CCeEEEEEEEecCCHHHHHHHHhCCCCCchh
Q psy3833 860 DGKVEEIKLNHSMNEQQITWFQAELPTRIPA 890 (1087)
Q Consensus 860 dG~~~~~~l~~~lt~~E~e~~~aGGiLn~sr 890 (1087)
.| ++++++ .+++.+++++++||+++|.+
T Consensus 128 ~g--~~~~~~-~~~~~~~~il~~GGl~~~~~ 155 (156)
T TIGR02084 128 KG--KEYKAT-PFPEFLQKIMKAGGLLNYVK 155 (156)
T ss_pred CC--EEEEee-cCCHHHHHHHHcCCHHHHhh
Confidence 34 456666 68999999999999999753
No 41
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=99.97 E-value=7.5e-33 Score=282.00 Aligned_cols=154 Identities=27% Similarity=0.298 Sum_probs=124.5
Q ss_pred eeeeeecCccccccccCCCCcccccCccccccccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEEecC
Q psy3833 697 VVLIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGD 776 (1087)
Q Consensus 697 rvLl~~gd~iTTDhIsPAG~~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG 776 (1087)
|| ++++|+|+||+|+|+ +||++ .+.+.+++++|.+. .|+|..+++ .+.|||||
T Consensus 3 rv-~~~gdnIdTD~I~P~-~~l~~-~~~~~l~~~~f~~~---------------------~p~f~~~~~---~g~IiVaG 55 (163)
T PRK00439 3 RV-WKFGDNIDTDVIIPA-RYLNT-SDPQELAKHCMEDL---------------------DPEFAKKVK---PGDIIVAG 55 (163)
T ss_pred eE-EEeCCCCchhhCChH-HHhCC-CCHHHHHHHHhccC---------------------CcchHhhcC---CceEEEeC
Confidence 44 589999999999997 78876 56677777777532 266766654 24799999
Q ss_pred CCcCCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecCCCCcccCCCCCEEEEccccCcCCCCcEEEEE
Q psy3833 777 ENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRISLVGLKDLAPGKPVTAQI 856 (1087)
Q Consensus 777 ~nyG~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l~~gD~i~I~~l~~l~pg~~v~v~v 856 (1087)
+|||||||||||||+++.+|++||||+||+|||++|++|+||||+++++ +|+.++.||+|+|+ + . .+.| .+
T Consensus 56 ~NfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~i~~~~--~~~~l~~gd~i~id-l---~-~~~v--~~ 126 (163)
T PRK00439 56 KNFGCGSSREHAPIALKAAGVSAVIAKSFARIFYRNAINIGLPVLECDE--AVDKIEDGDEVEVD-L---E-TGVI--TN 126 (163)
T ss_pred CcccCCccHHHHHHHHHHHCCCeEEEehHHHHHHhhHHhcCCCeEEchh--HHHhcCCCCEEEEE-C---C-CCEE--Ee
Confidence 9999999999999999999999999999999999999999999999964 48899999999997 3 2 2233 22
Q ss_pred EecCCeEEEEEEEecCCHHHHHHHHhCCCCCchh
Q psy3833 857 KHADGKVEEIKLNHSMNEQQITWFQAELPTRIPA 890 (1087)
Q Consensus 857 ~~~dG~~~~~~l~~~lt~~E~e~~~aGGiLn~sr 890 (1087)
. .+|++ +++. .+++.+++++++||++||.+
T Consensus 127 ~-~~g~~--~~f~-~l~~~~~~il~aGGl~~~~~ 156 (163)
T PRK00439 127 L-TTGEE--YKFK-PIPEFMLEILKAGGLIEYLK 156 (163)
T ss_pred C-CCCeE--EEEe-eCCHHHHHHHHcCCHHHHHH
Confidence 2 23544 5544 57899999999999999653
No 42
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=99.97 E-value=1.3e-32 Score=280.68 Aligned_cols=151 Identities=27% Similarity=0.287 Sum_probs=123.0
Q ss_pred eeecCccccccccCCCCcccccCccccccccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEEecCCCc
Q psy3833 700 IKVKGKCTTDHISAAGPWLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENY 779 (1087)
Q Consensus 700 l~~gd~iTTDhIsPAG~~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG~ny 779 (1087)
++++|+|+||+|+|+ +||++....+.+..++|.+. .|+|+.+++. ++|||||+||
T Consensus 5 ~~~gdnIdTD~IiPa-~~l~~~~~~~~l~~~~f~~~---------------------~p~f~~~~~~---g~IIVaG~NF 59 (166)
T PRK14023 5 WKFGDNINTDDILPG-KYAPFMVGEDRFHNYAFAHL---------------------RPEFASTVRP---GDILVAGRNF 59 (166)
T ss_pred EEcCCCcchhhcchH-HHhccCCCHHHHHhhhccCC---------------------ChhhHhhcCC---CCEEEccCcc
Confidence 589999999999998 79876555666777766532 3677777653 4799999999
Q ss_pred CCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecCCCCcccCCCCCEEEEccccCcCCCCcEEEEEEec
Q psy3833 780 GEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRISLVGLKDLAPGKPVTAQIKHA 859 (1087)
Q Consensus 780 G~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l~~gD~i~I~~l~~l~pg~~v~v~v~~~ 859 (1087)
|||||||||+|+++.+|+++|||+||+|||++|++|+||||++ ++++|+.++.||+|+|+ + .+++++ +
T Consensus 60 G~GSSREhA~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~~~--~~~~~~~l~~gd~i~vD-l----~~~~v~--~--- 127 (166)
T PRK14023 60 GLGSSREYAPEALKMLGIGAIIAKSYARIFYRNLVNLGIPPFE--SEEVVDALEDGDEVELD-L----ETGVLT--R--- 127 (166)
T ss_pred cCCccHHHHHHHHHHHCCCEEEEehHHHHHHhhhhhcCCCccC--CHHHHHHhCCCCEEEEE-C----CCCEEE--E---
Confidence 9999999999999999999999999999999999999999976 45678999999999997 3 122333 1
Q ss_pred CCeEEEEEEEecCCHHHHHHHHhCCCCCchh
Q psy3833 860 DGKVEEIKLNHSMNEQQITWFQAELPTRIPA 890 (1087)
Q Consensus 860 dG~~~~~~l~~~lt~~E~e~~~aGGiLn~sr 890 (1087)
+|+ ++++.. +++.+++++++||+++|.+
T Consensus 128 ~g~--~~~~~~-~~~~~~~il~aGGl~~~~~ 155 (166)
T PRK14023 128 GGE--TFQLRP-PPEFLLEALKEGSILEYYR 155 (166)
T ss_pred CCE--EEEEee-CCHHHHHHHHcCCHHHHHH
Confidence 344 355553 6889999999999999654
No 43
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=99.97 E-value=3.5e-32 Score=274.57 Aligned_cols=148 Identities=24% Similarity=0.272 Sum_probs=119.0
Q ss_pred eeecCccccccccCCCCcccccCccccccccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEEecCCCc
Q psy3833 700 IKVKGKCTTDHISAAGPWLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENY 779 (1087)
Q Consensus 700 l~~gd~iTTDhIsPAG~~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG~ny 779 (1087)
++++|+|+||||+|+ +||.+ .+.+.+..++|.+. .|+|+.+.+. ++|||||+||
T Consensus 4 ~~~gdnIdTD~IiP~-~~l~~-~~~~~l~~~~f~~~---------------------~p~f~~~~~~---g~iiVaG~NF 57 (154)
T TIGR02087 4 WKFGDDIDTDEIIPG-RYLRT-TDPDELASHAMEGI---------------------DPEFAKKVRP---GDVIVAGKNF 57 (154)
T ss_pred EEcCCCcchhhCcHH-HHhCc-CCHHHHHhhccCcC---------------------CchhhhcCCC---CcEEEcCCcc
Confidence 589999999999998 79865 45566777777532 3777666443 4799999999
Q ss_pred CCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecCCCCcccCCCCCEEEEccccCcCCCCcEEEEEEec
Q psy3833 780 GEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRISLVGLKDLAPGKPVTAQIKHA 859 (1087)
Q Consensus 780 G~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l~~gD~i~I~~l~~l~pg~~v~v~v~~~ 859 (1087)
|||||||||+|+++.+||+||||+||+|||++|++|+||||+++++ +.++.||+|+|+ + ..++|+ ..
T Consensus 58 G~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Glp~i~~~~----~~i~~gd~i~vd-l----~~~~v~----~~ 124 (154)
T TIGR02087 58 GCGSSREQAALALKAAGIAAVIAESFARIFYRNAINIGLPLIEAKT----EGIKDGDEVTVD-L----ETGEIR----VN 124 (154)
T ss_pred cCCccHHHHHHHHHHhCCCEEEeehHHHHHHhhhhhcCCCcEecCH----HHCCCCCEEEEE-C----CCCEEE----EC
Confidence 9999999999999999999999999999999999999998876654 568999999997 3 223333 23
Q ss_pred CCeEEEEEEEecCCHHHHHHHHhCCCCCch
Q psy3833 860 DGKVEEIKLNHSMNEQQITWFQAELPTRIP 889 (1087)
Q Consensus 860 dG~~~~~~l~~~lt~~E~e~~~aGGiLn~s 889 (1087)
+|+ ++++ +.+++.+++++++||++||.
T Consensus 125 ~g~--~~~~-~~l~~~~~~i~~aGGl~~~~ 151 (154)
T TIGR02087 125 GNE--EYKG-EPLPDFLLEILREGGLLEYL 151 (154)
T ss_pred CCe--EEEE-eCCCHHHHHHHHcCCHHHHH
Confidence 444 4555 47899999999999999954
No 44
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=99.97 E-value=5e-32 Score=263.70 Aligned_cols=119 Identities=51% Similarity=0.748 Sum_probs=105.9
Q ss_pred eecCccccccccCCC-CcccccCccccccccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEEecCCCc
Q psy3833 701 KVKGKCTTDHISAAG-PWLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENY 779 (1087)
Q Consensus 701 ~~gd~iTTDhIsPAG-~~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG~ny 779 (1087)
+++|+||||||+|++ .|+.+|++++++++++|.+. .|+|+.+++..+ ..|||||+||
T Consensus 1 ~~gdnidTD~IiP~~~~~~~~~~~~~~l~~~~f~~~---------------------~p~f~~~~~~~~-~~iiVaG~nF 58 (121)
T cd01579 1 KVGDNITTDHIMPAGAKVLPLRSNIPAISEFVFHRV---------------------DPTFAERAKAAG-PGFIVGGENY 58 (121)
T ss_pred CCCCcCChhhcCCCCccccccCCCHHHHHHhhccCC---------------------CchHHhhcccCC-CeEEEcCCcC
Confidence 579999999999998 48988888888888888632 367777665433 4699999999
Q ss_pred CCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecCCCCcccCCCCCEEEEc
Q psy3833 780 GEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRISLV 841 (1087)
Q Consensus 780 G~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l~~gD~i~I~ 841 (1087)
|||||||||+|+++.+|+++|||+||+|||++|++|+|||||+++++..|+.++.||+|+|+
T Consensus 59 G~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Gll~i~~~~~~~~~~~~~gd~i~id 120 (121)
T cd01579 59 GQGSSREHAALAPMYLGVRAVLAKSFARIHRANLINFGILPLTFADEDDYDRFEQGDQLELP 120 (121)
T ss_pred CCCccHHHHHHHHHHHCCCEEEEccHHHHHHhHHhhcCcceEEecChhhHhhcCCCCEEEcC
Confidence 99999999999999999999999999999999999999999999988889999999999986
No 45
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=99.96 E-value=5.1e-31 Score=281.04 Aligned_cols=160 Identities=23% Similarity=0.304 Sum_probs=120.2
Q ss_pred cceeeeeecCccccccccCCCCccccc-C---ccccccccccccccccccCcccceEeecCCCcCChHHHHHHHHHcC--
Q psy3833 695 DMVVLIKVKGKCTTDHISAAGPWLKFR-G---HLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAG-- 768 (1087)
Q Consensus 695 ~arvLl~~gd~iTTDhIsPAG~~L~~r-g---~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g-- 768 (1087)
..|| .+++|+|+||||+|+. ||.++ + ..+.+..++|.+.. |++..++.+.|
T Consensus 70 ~Grv-~k~gDNIdTD~IiPa~-~l~~~~sn~~~~~~l~~~~F~~l~---------------------~~~~~r~v~~Gd~ 126 (246)
T PLN00072 70 HGLC-FVVGDNIDTDQIIPAE-YLTLVPSKPDEYEKLGSYALIGLP---------------------AFYKTRFVEPGEM 126 (246)
T ss_pred EEeE-EEeCCCcchhhcccHH-HhccccccCCCHHHHHHhhhccCC---------------------cchhhcccCCCCC
Confidence 4677 5899999999999985 88763 3 35667777776431 11112222111
Q ss_pred --CCcEEecCCCcCCCccchhhccccccccceEEEEechhHHHhhhhccCc-cceEEecCCCCcccCCCCCEEEEccccC
Q psy3833 769 --VPWVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQG-LLPLTFANPSDYDKIQPNDRISLVGLKD 845 (1087)
Q Consensus 769 --~~~IVVAG~nyG~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~G-llpL~f~~~~~~~~l~~gD~i~I~~l~~ 845 (1087)
...|||||+|||||||||||+|+++.+||+||||+||+|||++|++|+| +||++ .++++|+.++.||+|+|+ ++
T Consensus 127 ~~~~~IIVaG~NFGcGSSREhA~~AL~~~GI~aVIA~SFArIF~rN~iN~GLllpi~-~~~~~~e~i~~Gd~i~VD-l~- 203 (246)
T PLN00072 127 KTKYSIIIGGENFGCGSSREHAPVALGAAGAKAVVAESYARIFFRNSVATGEVYPLE-SEVRICEECKTGDVVTVE-LG- 203 (246)
T ss_pred CCCceEEEecCcccCCCcHHHHHHHHHHcCCCEEEECcHHHHHHHHHHhCCcceeec-ccHHHHHhcCCCCEEEEE-CC-
Confidence 1259999999999999999999999999999999999999999999999 78987 455678899999999997 32
Q ss_pred cCCCCcEEEEEEecCCeEEEEEEEecCCHHHHHHHHhCCCCCchh
Q psy3833 846 LAPGKPVTAQIKHADGKVEEIKLNHSMNEQQITWFQAELPTRIPA 890 (1087)
Q Consensus 846 l~pg~~v~v~v~~~dG~~~~~~l~~~lt~~E~e~~~aGGiLn~sr 890 (1087)
++ ++++. .+|+ +|.++. + +.+++++++||+++|.+
T Consensus 204 ---~~--~v~n~-t~g~--~~~~~p-~-~~~~~Il~aGGl~~y~r 238 (246)
T PLN00072 204 ---NS--VLINH-TTGK--EYKLKP-I-GDAGPVIDAGGIFAYAR 238 (246)
T ss_pred ---CC--EEEEC-CCCe--EEEecC-C-HHHHHHHHcCCHHHHHH
Confidence 22 23222 2344 556553 2 35999999999999765
No 46
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=99.95 E-value=2.4e-29 Score=258.05 Aligned_cols=160 Identities=26% Similarity=0.277 Sum_probs=118.2
Q ss_pred cceeeeeec-CccccccccCCCCcccccCccccccccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEE
Q psy3833 695 DMVVLIKVK-GKCTTDHISAAGPWLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVA 773 (1087)
Q Consensus 695 ~arvLl~~g-d~iTTDhIsPAG~~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IV 773 (1087)
..++. +++ |||+||+|+|+ +||+... ...+..++|.++.. . .|||....++.+..+|+
T Consensus 8 ~G~~~-pl~~dnIDTD~IIP~-~fLk~i~-~~gl~k~~f~~~r~------------~------~PdF~~n~~~yq~g~Il 66 (191)
T COG0066 8 TGRVW-PLGRDNVDTDQIIPK-RFLKTIT-RTGLGKHLFEDWRY------------L------DPDFVLNVPPYQGGDIL 66 (191)
T ss_pred eeeEE-ecCCCCCccccCccH-HHhcccC-Hhhhhhcccccccc------------c------CcchhhcCCccCCccEE
Confidence 34554 555 99999999997 7998643 56666777765421 1 16676655444446899
Q ss_pred ecCCCcCCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecCCCCcccCCC--CCEEEEccccCcCCCCc
Q psy3833 774 VGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQP--NDRISLVGLKDLAPGKP 851 (1087)
Q Consensus 774 VAG~nyG~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l~~--gD~i~I~~l~~l~pg~~ 851 (1087)
|||+|||||||||||+||++.+|+++|||+||||||++|++|+||||+....++--+.++. |++++|+ ++ .++
T Consensus 67 Vag~NFGcGSSREHApwALk~~Gi~~VIA~SFAdIFy~Na~nnG~Lpi~~~~~~~~~l~~~~~g~~i~VD-L~----~~~ 141 (191)
T COG0066 67 VAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNGLLPIVLAEEDVTELFEDVPGDEVTVD-LE----TGE 141 (191)
T ss_pred EecCCCCCCccHHHHHHHHHHcCeeEEEeccHHHHHhhhhhhcCcCceecChHHHHHHHHhCCCCEEEEE-cC----CCe
Confidence 9999999999999999999999999999999999999999999999998765422233455 9999997 32 222
Q ss_pred EEEEEEecCCeEEEEEEEecCCHHHHHHHHhC----CCCCc
Q psy3833 852 VTAQIKHADGKVEEIKLNHSMNEQQITWFQAE----LPTRI 888 (1087)
Q Consensus 852 v~v~v~~~dG~~~~~~l~~~lt~~E~e~~~aG----GiLn~ 888 (1087)
|+ ..+|.... ..+++.-++.+++| |++.+
T Consensus 142 v~----~~~~~~~~----f~i~~f~~~~L~~GlD~iGlt~~ 174 (191)
T COG0066 142 VT----NPTGGEEP----FEIDDFRREILLNGLDDIGLTLQ 174 (191)
T ss_pred EE----eCCCCEEE----ccCCHHHHHHHHcCCcccchHHH
Confidence 22 22233333 35679999999999 87653
No 47
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=99.94 E-value=1.1e-27 Score=220.91 Aligned_cols=71 Identities=63% Similarity=0.965 Sum_probs=69.1
Q ss_pred cEEecCCCcCCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecCCCCcccCCCCCEEEEc
Q psy3833 771 WVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRISLV 841 (1087)
Q Consensus 771 ~IVVAG~nyG~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l~~gD~i~I~ 841 (1087)
+|||||+|||||||||||+|+++++|+++|||+||+|||++|++|+|+|||+|+++.+|++++.||+|+|+
T Consensus 17 ~iiVaG~nfG~GSSRE~A~~al~~~Gi~aVia~sfa~If~rN~~n~Gll~l~~~~~~~~~~i~~gd~l~id 87 (88)
T cd00404 17 GVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADPEDYLKLHTGDELDIY 87 (88)
T ss_pred EEEEecCCeecCCCHHHHHHHHHHhCCCEEEEeCHHHHHHhhHHhcCCceEEecCcchhhhcCCCCEEEeC
Confidence 58999999999999999999999999999999999999999999999999999998899999999999986
No 48
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.
Probab=99.94 E-value=2.1e-27 Score=246.42 Aligned_cols=161 Identities=24% Similarity=0.300 Sum_probs=117.1
Q ss_pred ccceeeeeecCccccccccCCCCcccccCccccccccccccccccccCcccceEeecCCCcCChHHH---HHHHHHcCCC
Q psy3833 694 KDMVVLIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEV---ARAYKAAGVP 770 (1087)
Q Consensus 694 ~~arvLl~~gd~iTTDhIsPAG~~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~---A~~yk~~g~~ 770 (1087)
...++....+++|+||+|+|+ +||+.. ..+.+..++|.+.... .++|. ...|+| .+.|+. .
T Consensus 7 ~~G~~~~l~~dnIDTD~IiP~-rfl~~~-~~~~l~~~~f~~~R~~----------~~~g~-~~~p~F~ln~~~~~~---~ 70 (188)
T TIGR00171 7 HTGLVAPLDAANVDTDAIIPK-QFLKRI-TRTGFGKHLFFDWRFL----------DANGK-EPNPDFVLNQPQYQG---A 70 (188)
T ss_pred EEEEEEECCCCcCcHhhhhHH-HHhCcC-CHHHHHHhcccccccc----------ccccC-CCCcchhhcccccCC---C
Confidence 445665444899999999997 798753 4566777777654210 11221 124666 455543 4
Q ss_pred cEEecCCCcCCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecCCCCccc----CCCCCEEEEccccCc
Q psy3833 771 WVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDK----IQPNDRISLVGLKDL 846 (1087)
Q Consensus 771 ~IVVAG~nyG~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~----l~~gD~i~I~~l~~l 846 (1087)
.|||||+|||||||||||+|+++.+||+||||+||++||++|++|+|+||++++.++..+. .+.|++|+|+ +
T Consensus 71 ~IlVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SFa~IF~rN~~nnGll~i~~~~~~i~~~~~~~~~~g~~i~vD-l--- 146 (188)
T TIGR00171 71 SILLARENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNGLLPIRLSYDEVKELFGQVENQGLQMTVD-L--- 146 (188)
T ss_pred cEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCccccCHHHHHHHHHHhhCCCCEEEEE-C---
Confidence 7999999999999999999999999999999999999999999999999999985433332 4889999997 3
Q ss_pred CCCCcEEEEEEecCCeEEEEEEEecCCHHHHHHHHhC
Q psy3833 847 APGKPVTAQIKHADGKVEEIKLNHSMNEQQITWFQAE 883 (1087)
Q Consensus 847 ~pg~~v~v~v~~~dG~~~~~~l~~~lt~~E~e~~~aG 883 (1087)
..++|+ + .+|++..|+ +++.+++.+..|
T Consensus 147 -~~~~v~--~--~~~~~~~f~----i~~~~r~~ll~G 174 (188)
T TIGR00171 147 -ENQLIH--D--SEGKVYSFE----IDPFRKHCLING 174 (188)
T ss_pred -CCCEEE--e--CCCeEEEEE----eCHHHHHHHHcC
Confidence 222333 2 245443343 568888888887
No 49
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=99.93 E-value=4.4e-27 Score=246.34 Aligned_cols=163 Identities=26% Similarity=0.336 Sum_probs=118.7
Q ss_pred cceeeeeecCccccccccCCCCcccccCccccccccccccccccccCcccceEeecCCCcCChHHH---HHHHHHcCCCc
Q psy3833 695 DMVVLIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEV---ARAYKAAGVPW 771 (1087)
Q Consensus 695 ~arvLl~~gd~iTTDhIsPAG~~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~---A~~yk~~g~~~ 771 (1087)
..+++...+|+|+||+|+|+ +||+.. ..+.+..++|.+... .++|. ..|+| ++.|+. ..
T Consensus 8 ~G~~~~l~~dnIDTD~IiPa-~fl~~~-~~~~l~~~~f~~~r~-----------~~~~~--~~p~F~ln~~~~~~---~~ 69 (200)
T PRK01641 8 TGLAVPLDRANVDTDQIIPK-QFLKRI-TRTGFGKGLFDDWRY-----------LDDGQ--PNPDFVLNQPRYQG---AS 69 (200)
T ss_pred EEEEEEcCCCCCChhhcchH-hHcCcC-CHHHHHHhhhccccc-----------cccCC--CCCCccccccccCC---Ce
Confidence 45776666999999999997 688643 456677777775421 12221 13455 445532 47
Q ss_pred EEecCCCcCCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecCCCCcc----cC--CCCCEEEEccccC
Q psy3833 772 VAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYD----KI--QPNDRISLVGLKD 845 (1087)
Q Consensus 772 IVVAG~nyG~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~----~l--~~gD~i~I~~l~~ 845 (1087)
|||||+|||||||||||+|+++.+||+||||+||++||++|++|+||||++++.+ +++ .+ +.|++|+|+ +
T Consensus 70 IlVaG~NFGcGSSRE~A~~al~~~Gi~aVIA~SFa~IF~rN~~n~Gll~i~~~~~-~i~~l~~~~~~~~g~~i~vD-l-- 145 (200)
T PRK01641 70 ILLAGDNFGCGSSREHAPWALADYGFRAVIAPSFADIFYNNCFKNGLLPIVLPEE-DVDELFKLVEANPGAELTVD-L-- 145 (200)
T ss_pred EEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCeEeeCHH-HHHHHHHHHhcCCCCEEEEE-c--
Confidence 9999999999999999999999999999999999999999999999999999742 233 34 689999997 3
Q ss_pred cCCCCcEEEEEEecCCeEEEEEEEecCCHHHHHHHHhCCCCCchhhh
Q psy3833 846 LAPGKPVTAQIKHADGKVEEIKLNHSMNEQQITWFQAELPTRIPAWL 892 (1087)
Q Consensus 846 l~pg~~v~v~v~~~dG~~~~~~l~~~lt~~E~e~~~aGGiLn~sr~l 892 (1087)
..+.|+. .|+ +++++ +++..++.+.+| +.-..++
T Consensus 146 --~~~~v~~-----~~~--~~~f~--i~~~~~~~l~~G--~D~i~~~ 179 (200)
T PRK01641 146 --EAQTVTA-----PDK--TFPFE--IDPFRRHCLLNG--LDDIGLT 179 (200)
T ss_pred --CCCEEec-----CCe--EEEEE--cCHHHHHHHHcC--CCHHHHH
Confidence 2222331 243 34443 679999999999 5444443
No 50
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=99.93 E-value=2.7e-26 Score=226.01 Aligned_cols=119 Identities=39% Similarity=0.507 Sum_probs=91.6
Q ss_pred eeeeeecCccccccccCCCCcccccCccccc--cccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEEe
Q psy3833 697 VVLIKVKGKCTTDHISAAGPWLKFRGHLDNI--SNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAV 774 (1087)
Q Consensus 697 rvLl~~gd~iTTDhIsPAG~~L~~rg~~~~i--~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IVV 774 (1087)
...-...++++||.|+|+ .|++ .+++. .+.++.+. ..+...+.++++..++++.+..|+.++.+.||+
T Consensus 10 ~~~~~~~s~idtd~i~p~-~~~~---~~~~~~l~~~l~~~~------r~~~~~~~~~~~~~~f~~~~~~~~~~~~~ilv~ 79 (131)
T PF00694_consen 10 VAVPDFNSNIDTDQIIPA-MFLG---TFANTGLGNILFDDW------RYGKTGYLPDGEKPDFYLNAPRYKVEGGDILVV 79 (131)
T ss_dssp EEEEEHHSTGGGHHHSCG-GHHH---SCGCTTTGGGTTTTS------CBSSEEETTTTEEETHHHHHHHHHHTTTEEEEE
T ss_pred ccccccccccccccccHH-HHhc---cccCcchhhhhccCc------ceeeeeccccCcCCcchhchhhhcccCCCEEEE
Confidence 334467889999999997 4653 33333 34444332 234556666777778899999999888887778
Q ss_pred cCCCcCCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecC
Q psy3833 775 GDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFAN 825 (1087)
Q Consensus 775 AG~nyG~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~ 825 (1087)
||+|||||||||||||+++.+||+||||+||+|||++|++|+|||||+|++
T Consensus 80 ~g~nfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~~N~~n~Gllpl~~~~ 130 (131)
T PF00694_consen 80 GGENFGCGSSREHAAWALKDLGIRAVIAESFARIFRRNLINNGLLPLEFPE 130 (131)
T ss_dssp E-SSBTBSS--THHHHHHHHTTEEEEEESSB-HHHHHHHHHTT-EEEEESC
T ss_pred CCCcccCCcchHHHHHHHHHhCCeEEEechHHHHHHHHHHhCCceEEEecC
Confidence 889999999999999999999999999999999999999999999999975
No 51
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.92 E-value=5.1e-26 Score=211.32 Aligned_cols=71 Identities=39% Similarity=0.586 Sum_probs=64.6
Q ss_pred cEEecCCCcCCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecCCCCcc-cCCCCCEEEEc
Q psy3833 771 WVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYD-KIQPNDRISLV 841 (1087)
Q Consensus 771 ~IVVAG~nyG~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~-~l~~gD~i~I~ 841 (1087)
+|||+|+|||||||||||+|+++.+|+++|||+||++||++|++|+|+||+++.++..++ .++.||+++|+
T Consensus 19 ~ilVaG~nfG~GSSRE~A~~al~~~Gi~avia~sFa~If~~N~~n~Gllp~~~~~~~~~~~~~~~g~~i~vd 90 (91)
T cd01577 19 DIIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFARIFFRNAINNGLLPVTLADEDVEEVEAKPGDEVEVD 90 (91)
T ss_pred CEEEecCcccCCCcHHHHHHHHHHhCCCEEEEchHHHHHHhhHhhCCCcceeeChhhhhHhhcCCCCEEEEe
Confidence 699999999999999999999999999999999999999999999999999987765443 57888888875
No 52
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.91 E-value=2e-25 Score=217.24 Aligned_cols=97 Identities=23% Similarity=0.248 Sum_probs=81.2
Q ss_pred cCccccccccCCCCccccc--CccccccccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEEecCCCcC
Q psy3833 703 KGKCTTDHISAAGPWLKFR--GHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENYG 780 (1087)
Q Consensus 703 gd~iTTDhIsPAG~~L~~r--g~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG~nyG 780 (1087)
.|+|+||+|+|+ .|+ ++ ...+.++.++|.+. .|+|+++.+. +.|||+|+|||
T Consensus 3 ~DnInTD~IiP~-~y~-~~~~~~~e~la~~~~e~~---------------------dp~f~~~v~~---gdilVaG~nFG 56 (129)
T cd01674 3 ADNLNTDGIYPG-KYT-YQDDITPEKMAEVCMENY---------------------DSEFSTKTKQ---GDILVSGFNFG 56 (129)
T ss_pred ccccchhccCcc-ccc-ccCCCCHHHHHHhhcccC---------------------CchhhhcCCC---CCEEEeCCccC
Confidence 589999999997 587 44 23445666666432 4777766543 47999999999
Q ss_pred CCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecC
Q psy3833 781 EGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFAN 825 (1087)
Q Consensus 781 ~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~ 825 (1087)
||||||||+++++.+||++|||+||+|||++|++|+|+++|++++
T Consensus 57 ~GSSRE~A~~al~~~Gi~~VIA~SFa~If~rN~iN~Gl~~i~~~~ 101 (129)
T cd01674 57 TGSSREQAATALLAKGIPLVVSGSFGNIFSRNSINNALLSIELPF 101 (129)
T ss_pred CCCcHHHHHHHHHHcCccEEEechHHHHHHHhhHhcCCCeEechH
Confidence 999999999999999999999999999999999999999999875
No 53
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=99.90 E-value=2.2e-24 Score=259.94 Aligned_cols=188 Identities=18% Similarity=0.178 Sum_probs=139.2
Q ss_pred ccceeeeeecCccccccccCCCCcccccCccccccccccccccccccCcccceEeecCCCcCChHHHHHHHHH---cCCC
Q psy3833 694 KDMVVLIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKA---AGVP 770 (1087)
Q Consensus 694 ~~arvLl~~gd~iTTDhIsPAG~~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~---~g~~ 770 (1087)
...+| +|++|+|+||||||++ |+.+|++.+..+.++|.+. .|+|.++.++ .|.
T Consensus 166 i~g~V-~KvgdnInTD~I~Pa~-~~~~Rsdipl~a~~~~e~~---------------------~p~f~~~i~~~~~~G~- 221 (835)
T PRK09238 166 ITVTV-FKVTGETNTDDLSPAP-DAWSRPDIPLHALAMLKNR---------------------RPGPIKQIEELKKKGH- 221 (835)
T ss_pred cEEEE-EEeCCCCchhccCCcc-ccccCCCHHHHHHHhccCC---------------------CCcHHHHHHhhccCCC-
Confidence 35677 7999999999999985 8888888887787777532 3556666553 443
Q ss_pred cEEecCCCcCCCccchhhcccc------------ccccceEEEEechhHHHhhhhccCccceEEecCCCCcccCCCCCEE
Q psy3833 771 WVAVGDENYGEGSSREHAALEP------------RHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRI 838 (1087)
Q Consensus 771 ~IVVAG~nyG~GSSRE~Aa~~~------------r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l~~gD~i 838 (1087)
.|+|+|+|||||||||||++++ +..++++|||+||+|||++|++|.|+|||+++ ++.++.||+|
T Consensus 222 ~IivaG~nfG~GSSREhA~~al~~~~G~~ip~vP~k~~g~~VIa~SfArIFf~Nain~GlLpIe~d----~~~i~~Gd~i 297 (835)
T PRK09238 222 PVAYVGDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRAGGVVLGGKIAPIFFNTMEDSGALPIELD----VSKLNMGDVI 297 (835)
T ss_pred EEEEECCCEeCCcCHHHHHHHHHHhhCCccccccccceEEEEEeCchHHHHHhhhHHcCCceEEeC----HHHcCCCCEE
Confidence 4999999999999999999996 23345999999999999999999999999984 6789999999
Q ss_pred EEccccCcCCCCcEEEEEEecCCeEEEEEEEecC-CHHHHHHHHhCCCCCchh----------hhcc-------------
Q psy3833 839 SLVGLKDLAPGKPVTAQIKHADGKVEEIKLNHSM-NEQQITWFQAELPTRIPA----------WLDS------------- 894 (1087)
Q Consensus 839 ~I~~l~~l~pg~~v~v~v~~~dG~~~~~~l~~~l-t~~E~e~~~aGGiLn~sr----------~l~s------------- 894 (1087)
+|+-. .| ++.. .+|+ +..++.+ ++.+++++++||++||.. -|..
T Consensus 298 ~Id~~----~g---~I~~--~~g~---~~~~f~l~p~~~~div~AGGli~~i~gr~l~~~a~~~lg~~~~~~f~~~~~~~ 365 (835)
T PRK09238 298 DIYPY----KG---KIRN--ETGE---VIATFKLKTDVLLDEVRAGGRIPLIIGRGLTTKAREALGLPPSDVFRKPKQPA 365 (835)
T ss_pred EEECC----CC---EEEe--CCCe---EEEEEecCcHHHHHHHHcCChHHHHHhcccHHHHHHHcCCCchhhcCCCCCCC
Confidence 99832 22 2222 3342 2223333 688999999999999753 1110
Q ss_pred --c--cccc---------ccccccCceeeeecceeeeecc
Q psy3833 895 --S--LSIY---------EQGVKEFDTLRLRFKFYSIYDL 921 (1087)
Q Consensus 895 --s--~sl~---------~q~~~E~~~l~lrFkyy~f~d~ 921 (1087)
. .+|- ..+++.|+-+++|=...-.||+
T Consensus 366 ~~~~g~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~ 405 (835)
T PRK09238 366 DSGKGFTLAQKMVGRACGVPGVRPGTYCEPKMTTVGSQDT 405 (835)
T ss_pred cCCCcccHHHHHHHHhcCCCCCCCCCEEEEECCEEEeecc
Confidence 0 1122 2368899999998877777775
No 54
>KOG0454|consensus
Probab=99.88 E-value=8.5e-24 Score=236.09 Aligned_cols=401 Identities=16% Similarity=0.055 Sum_probs=292.0
Q ss_pred CCchhhhcc------ccccCCCceeccccccccccchhhHHHHHHHH-cCCC-cccCCcee--eecccccccCCCchhHH
Q psy3833 114 GRTLADSSY------EAEQTGPHSRLRPDRVAMQDATAQMAMLQFIS-SGLP-RVAVPSTI--HCDHLIEAQVGGVEDLK 183 (1087)
Q Consensus 114 GkTLAdKg~------E~VrpGe~V~l~~d~v~~qD~Tg~~a~~~~~~-~g~~-~v~~p~~~--~~DH~v~a~~~~~~d~~ 183 (1087)
|+|+.|+.. ..+.+|...+..+|..+.||..++-+..-+++ ++.. .|+.|.++ ..||.+-..--+ -++
T Consensus 66 p~~vtd~i~a~~~ersL~ymGl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv~g~Kia~n~k~am~vpgsg--lvk 143 (502)
T KOG0454|consen 66 PMTVTDKILARASERSLVYMGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVVDGEKIAVNPKHAMFVPGSG--LVK 143 (502)
T ss_pred CcccchHHHHhhhhhceeeccCCCCcccceeeecceeccccccccHHHHhhhhhccccceeEecccceEEecCch--hhH
Confidence 556666633 23678999999999999999988876654432 4433 68888876 468876543211 111
Q ss_pred HHhhhhHHHHHHHHHHHHhcCce--ecC---------CC-Ccceeeecc-cccccCCCeEecCCCCccCccccceeeccc
Q psy3833 184 RAKSQNEEVYAFLRSAGAKYGVG--FWH---------PG-SGIIHQIIL-ENYAFPGLLMIGTDSHTPNGGGLGGLCIGV 250 (1087)
Q Consensus 184 ~~~~~n~e~~~fl~~~~~~~Gi~--~~~---------pG-~GIiHqv~l-E~~~~Pg~~~vGtDSHT~~~GglGala~Gv 250 (1087)
..+-++..++.|++. +|+ |+ +|+||.-.. |.--.|+....|+||||++.++.+.++-|+
T Consensus 144 --------k~aeaegld~if~eagF~wreagcs~clgmnpd~l~~yercastsnRnfEgrqGa~srThlma~s~qfAagi 215 (502)
T KOG0454|consen 144 --------KVAEAEGLDRIFNEAGFYWREAGCSFCLGMNPDGLCHYERCASTSNRNFEGRQGADSRTHLMAASMQFAAGI 215 (502)
T ss_pred --------hHHHHHhhHHHHHhhceehhhccccccccCCchhccHHHHhhhccCCCccccccccccchhhhhhHHhhccc
Confidence 111222222222221 121 22 699997633 336789999999999999999999999999
Q ss_pred cHHHHHHHHhcCceEeecCcEEEEEEECcCCCCcchhHHHHHHHHHhcccCcccEEEEEeCCcccccCcccccccccccc
Q psy3833 251 GGADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGA 330 (1087)
Q Consensus 251 G~~d~a~~ma~g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~ 330 (1087)
|+.++....-++...+++|.++.++|+|+.++-...+|+++.|++..-+.+-..+..||.+-.. +|+++.++|||||.
T Consensus 216 ~~~~~~~~~~~~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~e~~s~~s-Sl~m~~F~tLc~vv- 293 (502)
T KOG0454|consen 216 GGHDLGFREFTGKDSLKVSPSPFLTLKGESPSVLPAKDLIVSIATDSSTDIPRVATMEFSSTTS-SLGMETFHTLCGVV- 293 (502)
T ss_pred cccccccccccccccccCCCCceEEeCCCCccccccccchhhhhccccccccceecccCCCccc-cccCcceeeeehhh-
Confidence 9999999999888999999999999999999999999999999988888888899999998655 79999999999992
Q ss_pred ccccccccccccchhhcccCCCccccccCCCccccccccccccccccccccccccccccccCCCCcccccccccCceeec
Q psy3833 331 EIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSV 410 (1087)
Q Consensus 331 E~~A~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~i 410 (1087)
.+.+-|-.|
T Consensus 294 -----------------------------------------------------------------------~dNiDTD~I 302 (502)
T KOG0454|consen 294 -----------------------------------------------------------------------ADNIDTDQI 302 (502)
T ss_pred -----------------------------------------------------------------------hhhCCcCcc
Confidence 223334445
Q ss_pred ccCcHHHHHHHHhcCChHHHHHHHHhhccCCCCCC-CcccEEEEEeCCCCccccccCCCCCccccccccchhhhhCCCcc
Q psy3833 411 FPYNNRMYDFLKATLREDIAKEAMKYQSLLTPDEG-AKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPM 489 (1087)
Q Consensus 411 f~~d~~t~~yL~~~~r~~~~~~~~~~~~~l~aD~d-A~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~~g~~~ 489 (1087)
+|.+-.+.-|-....+.. -|. +..|.+ +.|...+.+|.+..+|....|++ ||---=|+-...
T Consensus 303 IP~qfltli~~~~~~~~~------f~~--~~~dg~~k~~~~dFv~~vE~~~~~siii~~-DNFGCGSSREHA-------- 365 (502)
T KOG0454|consen 303 IPAQFLTLIPSTGLILSC------FYE--VALDGLPKSFVTDFVLPVEPLRKYSIIIGG-DNFGCGSSREHA-------- 365 (502)
T ss_pred cChhhhcccccchhhhhh------hhh--heecCCchhhccceeccccccceeEEEecc-CCcccccccccC--------
Confidence 554443333222211111 111 233444 78999999999999999999999 888776665543
Q ss_pred ceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEecCcHHHHH---HH--HHcC---hHHHHHhcCcEEecCC
Q psy3833 490 DIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRA---TI--ERDG---IAQTLREFGGTVLANA 561 (1087)
Q Consensus 490 ~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS~~v~~---~l--~~~G---~~~~l~~aGa~i~~pG 561 (1087)
+|+.+++|+|+...-++.++++..-- +.|..+++...+.|..+.+.. ++ -.+| ++.++.+.+..=..|-
T Consensus 366 Pv~L~~~GakaivA~Sya~IFfrN~~---atG~l~~~~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k~~f~lkP~ 442 (502)
T KOG0454|consen 366 PVCLGAAGAKAIVAPSYARIFFRNSV---ATGELPPLPSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGKVYFKLKPF 442 (502)
T ss_pred cchhhhcccceecchhHHHHHHHhHH---hcCCccCCCceeeecccceecceeeEEcccCCcceeeeeecccceeecCcc
Confidence 69999999999998888888876654 357767777777777655432 22 2212 4555667777556899
Q ss_pred ccccccCCCcccccCCcceeEEeecCCCCCCCCCCCCCcceeecCHHHHHHHHHhCc
Q psy3833 562 CGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAIKGT 618 (1087)
Q Consensus 562 Cg~CiG~~~~~~v~~g~~~~~vsT~NRNF~gR~G~~p~~~~yLaSp~lvAAsAiaG~ 618 (1087)
|..|.++...+.-.-.+...+|+|++|||++||| +...+.||+||-+|+|+++.|+
T Consensus 443 ~~aclV~~ad~I~~~~~ke~mIss~~a~r~e~~~-~~eg~~~la~~~~v~~~k~t~~ 498 (502)
T KOG0454|consen 443 GDACLVIDADGIFAYARKEGMISSTEANRPERMG-HKEGQIYLASPYTVAASKLTGR 498 (502)
T ss_pred cccCcccCchHHHHhhccccccchhhhcCccccC-ccccceEEccccchhhhhhcCC
Confidence 9999999765332334455789999999999998 6678999999999999999998
No 55
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=99.87 E-value=6.6e-23 Score=201.69 Aligned_cols=118 Identities=25% Similarity=0.295 Sum_probs=87.9
Q ss_pred eeecCccccccccCCCCcccccCccccccccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCc-EEecCCC
Q psy3833 700 IKVKGKCTTDHISAAGPWLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPW-VAVGDEN 778 (1087)
Q Consensus 700 l~~gd~iTTDhIsPAG~~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~-IVVAG~n 778 (1087)
++++|+|+||+|+|+ +|+..+ +.+..+.|....+. + ...++++.+..+ .+. |+|+|+|
T Consensus 1 ~~~gddIdTD~i~P~-~y~~~~---~~~~~ha~~~l~~~----------f----~~~~~~~~~~~~---~g~~ilvaG~n 59 (131)
T cd01576 1 FKVPGETNTDDLSPA-PDAWSR---PDIPLHALAMLKNK----------R----EGEIVAIAQLKP---KGHPVAYVGDV 59 (131)
T ss_pred CcCCCCCchhcccCh-hhcCCc---chHHHHHhccCCcc----------c----Cchhhhhhhccc---CCCeEEEECCc
Confidence 378999999999997 587533 22232333221110 0 012355544422 234 9999999
Q ss_pred cCCCccchhhccccc------------cccceEEEEechhHHHhhhhccCccceEEecCCCCcccCCCCCEEEEcc
Q psy3833 779 YGEGSSREHAALEPR------------HLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRISLVG 842 (1087)
Q Consensus 779 yG~GSSRE~Aa~~~r------------~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l~~gD~i~I~~ 842 (1087)
||||||||||+++++ .+|++||||+||+|||++|++|+|+||++++ .+.++.||++++++
T Consensus 60 FG~GSSRe~A~~aL~w~~g~~~~~~~~~~g~~aVia~sfa~IF~rNa~n~Gl~~i~~~----~~~~~~GD~l~vD~ 131 (131)
T cd01576 60 VGTGSSRKSATNSVLWHTGKDIPFVPNKRAGGVVLGGKIAPIFFNTAEDSGALPIQLD----VSVLDMGDILNIDG 131 (131)
T ss_pred eeeccchHHHHHHHHHHhccccccccccceEEEEEeCchhHHHHhhHHHcCCceEEeC----HHHcCCCCEEEeCC
Confidence 999999999999998 7799999999999999999999999999886 45689999999873
No 56
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=99.83 E-value=6.2e-21 Score=229.90 Aligned_cols=186 Identities=20% Similarity=0.230 Sum_probs=137.6
Q ss_pred cceeeeeecCccccccccCCCCcccccCccccccccccccccccccCcccceEeecCCCcCChHHHHHHH---HHcCCCc
Q psy3833 695 DMVVLIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAY---KAAGVPW 771 (1087)
Q Consensus 695 ~arvLl~~gd~iTTDhIsPAG~~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~y---k~~g~~~ 771 (1087)
..+|. |++|+|+||+|||+ +|+..|...+..+..+|.+. .|++.+.+ ++.|.|
T Consensus 168 ~g~V~-k~gddinTD~i~Pa-~~a~sr~D~~~~a~~m~~~~---------------------~p~~~~~i~~~~~~Gd~- 223 (844)
T TIGR00117 168 TVTVF-KVTGETNTDDLSPA-PDAWTRPDIPLHALAMLKNA---------------------REGIEPQIEALKQKGFP- 223 (844)
T ss_pred EEEEE-EeCCCCchhccCCh-hhhhcCCCHHHHHHHHhhcC---------------------CccHHHHHHHhccCCCe-
Confidence 35664 99999999999997 68877766666666666533 13333333 334433
Q ss_pred EEecCCCcCCCccchhhcccc-------------ccccceEEEEechhHHHhhhhccCccceEEecCCCCcccCCCCCEE
Q psy3833 772 VAVGDENYGEGSSREHAALEP-------------RHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRI 838 (1087)
Q Consensus 772 IVVAG~nyG~GSSRE~Aa~~~-------------r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l~~gD~i 838 (1087)
|+|+|+|||||||||||+.++ +.+| .+|||+||+|||+||++|.|+|||+++ .+.++.||+|
T Consensus 224 iivaG~nfG~GSSRe~A~~al~w~~g~~~p~vp~k~~G-~~Via~sfArIFfrnain~Gl~~ie~~----~~~l~~GD~i 298 (844)
T TIGR00117 224 VAYVGDVVGTGSSRKSATNSVLWHMGDDIPFVPNKRGG-GLCLGGKIAPIFFNTMEDSGALPIEVD----VSNLNMGDVI 298 (844)
T ss_pred EEEeCCceecCcchHHHHHHHHHhccCccccccccccc-ceEEeccChHhhhcchhhcCCCeEEeC----HhhcCCCCEE
Confidence 999999999999999999999 9999 999999999999999999999999875 5679999999
Q ss_pred EEccccCcCCCCcEEEEEEecCCeE-EEEEEEecCCHHHHHHHHhCCCCCch--hhh--------c--------------
Q psy3833 839 SLVGLKDLAPGKPVTAQIKHADGKV-EEIKLNHSMNEQQITWFQAELPTRIP--AWL--------D-------------- 893 (1087)
Q Consensus 839 ~I~~l~~l~pg~~v~v~v~~~dG~~-~~~~l~~~lt~~E~e~~~aGGiLn~s--r~l--------~-------------- 893 (1087)
+|+- ..| .+++ .+|+. .+|. .+++.-++++++||+++|. |=| .
T Consensus 299 ~Id~----~~G---~I~n--~~g~~~~~f~---~~p~~l~div~AGGli~~i~gr~l~~~~~~~l~~~~~~~f~~~~~~~ 366 (844)
T TIGR00117 299 DIYP----YKG---EITN--HEGELLATFE---LKPETLLDEVRAGGRIPLIIGRGLTTKAREALGLPHSDVFRQPKAPA 366 (844)
T ss_pred EEEC----CCC---EEEe--CCCCEEEEee---eCCHHHHHHHHcCCchhhhhcccchHHHHHHcCCChhhhccCCCCCC
Confidence 9972 223 2222 23433 3343 3578889999999999974 211 0
Q ss_pred -c--ccccc---------ccccccCceeeeecceeeeecc
Q psy3833 894 -S--SLSIY---------EQGVKEFDTLRLRFKFYSIYDL 921 (1087)
Q Consensus 894 -s--s~sl~---------~q~~~E~~~l~lrFkyy~f~d~ 921 (1087)
+ +.+|- ..+++.|+-++++=.+.-.||+
T Consensus 367 ~~~mg~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~ 406 (844)
T TIGR00117 367 ESDKGFTLAQKMVGRACGVKGIRPGTYCEPKMTTVGSQDT 406 (844)
T ss_pred cCCCchhHHHHHHHHhhCCCCCCCCCEEEEECcEEeeecc
Confidence 0 11222 2468899999999877777776
No 57
>PLN00094 aconitate hydratase 2; Provisional
Probab=99.68 E-value=1e-16 Score=193.67 Aligned_cols=192 Identities=20% Similarity=0.237 Sum_probs=133.0
Q ss_pred cceeeeeecCccccccccCCCC-cccccCccccccccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEE
Q psy3833 695 DMVVLIKVKGKCTTDHISAAGP-WLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVA 773 (1087)
Q Consensus 695 ~arvLl~~gd~iTTDhIsPAG~-~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IV 773 (1087)
...| +|+.+.++||.+|||.. |. |...+--+.-|+... .+| ...--+--+.+|+.|.| |+
T Consensus 236 ~~~v-fkv~ge~ntddlspa~~a~s--r~diplha~~m~~~~--------------~~~-~~~~~~~i~~lk~~g~~-ii 296 (938)
T PLN00094 236 TVTV-FKVTGETNTDDLSPAQDAWS--RPDIPLHALAMLKNP--------------REG-IQGPIAQIEELKKKGHP-LA 296 (938)
T ss_pred EEEE-EEecCcCccccCCCcccccC--CCCchhHHHHHhcCC--------------CCC-cccHHHHHHHHHHcCCc-eE
Confidence 3444 59999999999999974 43 322221122233211 111 00011223456888887 88
Q ss_pred ecCCCcCCCccchhhcccc-------------ccccceEEEEechhHHHhhhhccCccceEEecCCCCcccCCCCCEEEE
Q psy3833 774 VGDENYGEGSSREHAALEP-------------RHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRISL 840 (1087)
Q Consensus 774 VAG~nyG~GSSRE~Aa~~~-------------r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l~~gD~i~I 840 (1087)
|+|+|||||||||||+.++ +..|+.+ ||+||+|||+||++|.|+|||+++ .+.++.||.|+|
T Consensus 297 vvG~nfG~GSSResA~nsl~w~~g~~ip~vpnK~~G~~~-ia~sfArIFfrnain~G~~~Ie~~----v~~i~~GD~I~i 371 (938)
T PLN00094 297 YVGDVVGTGSSRKSATNSVLWFMGDDIPNVPNKRTGGVC-IGGKIAPIFFNTMEDSGALPIEMD----VKNLNMGDVIDI 371 (938)
T ss_pred EECCceecCCchHHHHHHHHHhccCCCcCCccccccceE-eeceecHHHhhchhhcCCceEecc----HhhcCCCCEEEE
Confidence 9999999999999999999 9999999 999999999999999999999875 567999999999
Q ss_pred ccccCcCCCCcEEEEEEecCCeEE-EEEEEecCCHHHHHHHHhCCCCCchh--hh--------c---------------c
Q psy3833 841 VGLKDLAPGKPVTAQIKHADGKVE-EIKLNHSMNEQQITWFQAELPTRIPA--WL--------D---------------S 894 (1087)
Q Consensus 841 ~~l~~l~pg~~v~v~v~~~dG~~~-~~~l~~~lt~~E~e~~~aGGiLn~sr--~l--------~---------------s 894 (1087)
+-- .| ++.+. .+|+.. +++ .+++.-++.+++||+++|.. =| . +
T Consensus 372 d~~----~G---~I~n~-~~g~~~~~f~---~~p~~l~d~vrAGGli~~i~gr~lt~~ar~~lg~~~~~~f~~p~~~~~~ 440 (938)
T PLN00094 372 YPY----EG---VVKRH-GTDEVITTFS---LKTPVLLDEVRAGGRIPLIIGRGLTSKAREALGLDASDVFRMPSVPESK 440 (938)
T ss_pred EcC----CC---EEEec-CCCeEEEecc---CCChHHHHHHHcCCcHhhhhcccchHHHHHHcCCCchhhccCCCCCCcC
Confidence 822 23 22222 245433 333 45788999999999999863 11 1 0
Q ss_pred c--cccc----------ccccccCceeeeecceeeeecc
Q psy3833 895 S--LSIY----------EQGVKEFDTLRLRFKFYSIYDL 921 (1087)
Q Consensus 895 s--~sl~----------~q~~~E~~~l~lrFkyy~f~d~ 921 (1087)
. .+|- +++++.|+.++++-...--||+
T Consensus 441 ~mG~TlaEKIl~~a~G~~~~V~pGe~v~~~vD~v~sqD~ 479 (938)
T PLN00094 441 PKGFTLAQKMVGKACGVDEGILPGTYCEPRMTTVGSQDT 479 (938)
T ss_pred CCchhHHHHHHHHHhCCCCCCCCCCEEEEECcEEeeecc
Confidence 0 1111 2568899999999877777775
No 58
>PRK14812 hypothetical protein; Provisional
Probab=99.63 E-value=1.5e-16 Score=155.02 Aligned_cols=88 Identities=24% Similarity=0.370 Sum_probs=67.9
Q ss_pred CCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecCCCCcc---cCCCCCEEEEccccCcCCCCcEEEEEE
Q psy3833 781 EGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYD---KIQPNDRISLVGLKDLAPGKPVTAQIK 857 (1087)
Q Consensus 781 ~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~---~l~~gD~i~I~~l~~l~pg~~v~v~v~ 857 (1087)
||||||||+|+++.+|++||||+||++||++|++|+||||++..+ +.++ .++.|++++|+ + .+++|+.
T Consensus 2 cGSSREhA~wAL~~~Gi~aVIA~SFa~IF~~N~~nnGllpi~~~~-~~~~~l~~~~~g~~i~vD-L----~~~~v~~--- 72 (119)
T PRK14812 2 AGSSREHAAWALADYGFKVVIAGSFGDIHYNNELNNGMLPIVQPR-EVREKLAQLKPTDQVTVD-L----EQQKIIS--- 72 (119)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEchHHHHHHhHHHHCCCCcccCCH-HHHHHHhccCCCCEEEEE-c----CCCEEEc---
Confidence 899999999999999999999999999999999999999998764 4455 46789999997 3 2223321
Q ss_pred ecCCeEEEEEEEecCCHHHHHHHHhC
Q psy3833 858 HADGKVEEIKLNHSMNEQQITWFQAE 883 (1087)
Q Consensus 858 ~~dG~~~~~~l~~~lt~~E~e~~~aG 883 (1087)
.++.+.|. +.+..++-+.+|
T Consensus 73 --~~~~~~f~----i~~~~~~~Ll~G 92 (119)
T PRK14812 73 --PVEEFTFE----IDSEWKHKLLNS 92 (119)
T ss_pred --CCeEEEEE----ECHHHHHHHHhC
Confidence 23333333 447777777777
No 59
>KOG3727|consensus
Probab=99.62 E-value=2.2e-17 Score=189.58 Aligned_cols=161 Identities=11% Similarity=-0.120 Sum_probs=135.2
Q ss_pred hhhcccccccccccccCceeeeecceeeeeccCccccce------------------------eeeeeecccCC-CCCCC
Q psy3833 890 AWLDSSLSIYEQGVKEFDTLRLRFKFYSIYDLNAKTDAV------------------------QVNLQSNVAQP-TDTSS 944 (1087)
Q Consensus 890 r~l~ss~sl~~q~~~E~~~l~lrFkyy~f~d~n~K~d~v------------------------ri~~q~~~~~~-~~~~~ 944 (1087)
+|+++++..|.++..+...++.+|.||+|+.+|++|+-+ ++|.|.....+ .|..
T Consensus 249 meq~~~e~d~~~lrfk~~~ffdlnpkyd~vrinqlyeqaKwsiL~ee~~~teee~~mfaalq~~~~~~~~~~~~~~d~~- 327 (664)
T KOG3727|consen 249 MEQGIREYDTLLLRFKYFTFFDLNPKYDQVRINQLYEQAKWSILLEELDCTEEEALMFAALQFQVNHQRDSTPPGENNE- 327 (664)
T ss_pred HHccchHHHHHHHHHhhhhhhhcccccceeeccccccchhHHHHHHhhcchHHHHHHHHHHHHHHHHhhhcCCCCCCCc-
Confidence 477777777777777888888888888888888888776 77776544322 2222
Q ss_pred CCCchhhHHHHHhhcccccCCcccccCCCCCCCCccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCC
Q psy3833 945 ISLADDDIDAALTDLQVTLEGSHISLASPDIMHVPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSP 1024 (1087)
Q Consensus 945 ~~~~~Ddid~aL~~Lev~~eg~~~~~~~~~~~~~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~ 1024 (1087)
-+..++.++.+++.+++++++ ..+..+..+...+-+....|-|+ +|++.|.|++||++|++|.+|||||+ .+. ++|
T Consensus 328 dd~d~~l~el~~tl~~~~~~~-~~D~t~ipel~dy~~~~kpk~~~-~Kg~kr~f~t~~dl~~~~~~s~~~s~-~ap-~~~ 403 (664)
T KOG3727|consen 328 DDVDSALDELEITLEGPALGR-RGDITRIPELADYLKYLKPKKLT-LKGYKRYFFTFRDLHLSLYKSSEDSR-GAP-AIS 403 (664)
T ss_pred chhHHHHHHHHHhhhccCcCC-ccccccCCcccchhhhhchhhhh-hhhhhhHHHHHHHHHHHHHhhHhhhc-CCC-CCc
Confidence 222345566669999999999 67778888899999999999999 99999999999999999999999999 888 899
Q ss_pred ceeecCCCceecccccccCceeEEEEEecCC
Q psy3833 1025 INEFSLRGCEVTPDVNLSQGKFIIKLEVPAA 1055 (1087)
Q Consensus 1025 ~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~ 1055 (1087)
|++.|++|||++||||++.+||||++++|.-
T Consensus 404 i~l~gcev~~dV~~~~~k~~i~l~~~~~~~m 434 (664)
T KOG3727|consen 404 INLKGCEVTPDVNLSQQKYAIKLLVPTAEGM 434 (664)
T ss_pred hhhcCcccCCccccccccceEEEEeecCCcc
Confidence 9999999999999999999999999999984
No 60
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=99.35 E-value=1.3e-13 Score=142.63 Aligned_cols=68 Identities=28% Similarity=0.391 Sum_probs=46.9
Q ss_pred cCCeecceeccC-----------Ccccccc---------------ccCceeEEeecCCCCCcHHHhh----hccccccch
Q psy3833 28 MNGSYSPVSWNG-----------NVSTLEM---------------LNGSLDSSLACSPSSPCKEARA----KLVKPKSLV 77 (1087)
Q Consensus 28 ~~~~~~~~~~~~-----------~~~~~e~---------------~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~l~ 77 (1087)
.||+|||||||+ +|+.|+| ++|+++++|+|+|++++||||| ||||||+||
T Consensus 97 ~G~~IAPIFfnT~edsGaLPIe~dv~~l~~Gdvi~I~p~~gki~~~~gev~~~f~l~p~~l~DevrAGGri~LiiGR~Lt 176 (204)
T PF06434_consen 97 IGGKIAPIFFNTAEDSGALPIECDVSSLNTGDVITIYPYEGKIYKENGEVISTFELKPQTLLDEVRAGGRIPLIIGRGLT 176 (204)
T ss_dssp EEEEE-HHHHHHHHHTT-EEEE---TT--TT-EEEEETTTTEEEETT--EEEE---S-TCHHHHHHHTSHHHHHHHHHHH
T ss_pred ECCEEcceEeccccccCCceEEEeccccCCCcEEEEecCCcEEECCCCCEEEEeecCchhHHHHHhcCCcEEEEechHHH
Confidence 689999999999 9999999 4899999999999999999999 999999999
Q ss_pred hhHHHhhCCCcccccccC
Q psy3833 78 EKARLNVATEKSLYLSSL 95 (1087)
Q Consensus 78 ~~~~~~l~~~~~l~~~~~ 95 (1087)
+|||++|||+.+..|+..
T Consensus 177 ~kAr~~Lgl~~s~vF~~p 194 (204)
T PF06434_consen 177 TKAREALGLPPSDVFAKP 194 (204)
T ss_dssp HHHHHHTT-----SS---
T ss_pred HHHHHHcCCCchhhccCC
Confidence 999999999988888744
No 61
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=98.99 E-value=1.3e-09 Score=98.59 Aligned_cols=96 Identities=24% Similarity=0.430 Sum_probs=84.0
Q ss_pred cccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccc-----cCceeEEEEEecCCC
Q psy3833 982 YDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNL-----SQGKFIIKLEVPAAD 1056 (1087)
Q Consensus 982 ~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~-----~~~k~~ikl~~p~~~ 1056 (1087)
.+||.... ...+.+|+.||++++..|.|||+..+.....|...++|.+|+|.++.+. ...++++.|..+..
T Consensus 4 ~G~L~~~~---~~~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~- 79 (104)
T PF00169_consen 4 EGWLLKKS---SSRKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNG- 79 (104)
T ss_dssp EEEEEEEE---SSSSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTS-
T ss_pred EEEEEEEC---CCCCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeCCC-
Confidence 45655554 6789999999999999999999988644467999999999999999998 58889999988876
Q ss_pred CCcceEEeccCHHHHHHHHHHhhhhhc
Q psy3833 1057 GMSEMFLRCENEEQYASWMAACRLQLT 1083 (1087)
Q Consensus 1057 ~~~e~~l~~~~e~qya~wmaacrl~~~ 1083 (1087)
+.++|.|+|++++.+||++.+.|++
T Consensus 80 --~~~~~~~~s~~~~~~W~~~i~~~~~ 104 (104)
T PF00169_consen 80 --KSYLFSAESEEERKRWIQAIQKAIK 104 (104)
T ss_dssp --EEEEEEESSHHHHHHHHHHHHHHHC
T ss_pred --cEEEEEcCCHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999875
No 62
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=98.77 E-value=2.7e-08 Score=92.61 Aligned_cols=94 Identities=18% Similarity=0.362 Sum_probs=76.0
Q ss_pred ccccceecc-cccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCCCCc
Q psy3833 981 LYDYLRCLK-PKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMS 1059 (1087)
Q Consensus 981 l~~~lk~~~-~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~ 1059 (1087)
.++||+-=. ...+..|.+|+.||++++..|.|||++.+.. |...|+|.||+|.+..... ++|+++|.-| +..
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~---~~~~I~L~~~~v~~~~~~~-k~~~F~I~~~---~~~ 74 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEK---AEGLIFLSGFTIESAKEVK-KKYAFKVCHP---VYK 74 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCc---cceEEEccCCEEEEchhcC-CceEEEECCC---CCc
Confidence 356665543 3455899999999999999999999987644 7789999999998765544 7899988633 457
Q ss_pred ceEEeccCHHHHHHHHHHhhhh
Q psy3833 1060 EMFLRCENEEQYASWMAACRLQ 1081 (1087)
Q Consensus 1060 e~~l~~~~e~qya~wmaacrl~ 1081 (1087)
.+||.+|+++..-+||.|.|-|
T Consensus 75 ~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 75 SFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred EEEEEeCCHHHHHHHHHHHHhC
Confidence 8999999999999999998865
No 63
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.63 E-value=1.2e-07 Score=85.86 Aligned_cols=90 Identities=20% Similarity=0.400 Sum_probs=70.7
Q ss_pred cccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCCCCcce
Q psy3833 982 YDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEM 1061 (1087)
Q Consensus 982 ~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~ 1061 (1087)
.+||+--.++ .+.+|+.||++++..|+|||++++.. ..|...++|.+|.+.++- .+++++.+..| ....+
T Consensus 2 ~G~L~k~~~~---~~~W~~r~~vl~~~~L~~~~~~~~~~-~~~~~~i~l~~~~~~~~~---~~~~~F~i~~~---~~~~~ 71 (91)
T cd01246 2 EGWLLKWTNY---LKGWQKRWFVLDNGLLSYYKNKSSMR-GKPRGTILLSGAVISEDD---SDDKCFTIDTG---GDKTL 71 (91)
T ss_pred eEEEEEeccc---CCCceeeEEEEECCEEEEEecCccCC-CCceEEEEeceEEEEECC---CCCcEEEEEcC---CCCEE
Confidence 3565444332 38999999999999999999987664 468999999999987763 33566666543 22789
Q ss_pred EEeccCHHHHHHHHHHhhhh
Q psy3833 1062 FLRCENEEQYASWMAACRLQ 1081 (1087)
Q Consensus 1062 ~l~~~~e~qya~wmaacrl~ 1081 (1087)
+|+++|+++..+||.|+|-|
T Consensus 72 ~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 72 HLRANSEEERQRWVDALELA 91 (91)
T ss_pred EEECCCHHHHHHHHHHHHhC
Confidence 99999999999999999865
No 64
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.52 E-value=3.3e-07 Score=89.86 Aligned_cols=97 Identities=19% Similarity=0.419 Sum_probs=77.3
Q ss_pred ccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCC------
Q psy3833 983 DYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAAD------ 1056 (1087)
Q Consensus 983 ~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~------ 1056 (1087)
+||+ |... .+|.+|+-||++++..|+|||++++. +|...|+|.+|.|..+.+ ...++|+.|..|...
T Consensus 4 G~L~--K~~~-~~~~WkkRwfvL~~~~L~yyk~~~~~---~~~g~I~L~~~~v~~~~~-~~~~~~F~i~~~~~~~~i~~~ 76 (125)
T cd01252 4 GWLL--KQGG-RVKTWKRRWFILTDNCLYYFEYTTDK---EPRGIIPLENVSIREVED-PSKPFCFELFSPSDKQQIKAC 76 (125)
T ss_pred EEEE--EeCC-CCCCeEeEEEEEECCEEEEEcCCCCC---CceEEEECCCcEEEEccc-CCCCeeEEEECCccccccccc
Confidence 5665 2222 35999999999999999999986653 488999999999888765 467899988877741
Q ss_pred ----------CCcceE-EeccCHHHHHHHHHHhhhhhcccC
Q psy3833 1057 ----------GMSEMF-LRCENEEQYASWMAACRLQLTENN 1086 (1087)
Q Consensus 1057 ----------~~~e~~-l~~~~e~qya~wmaacrl~~~~~~ 1086 (1087)
+...+| |.|+|+++.-+||.|.+-++..|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~~ 117 (125)
T cd01252 77 KTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPNP 117 (125)
T ss_pred cccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCc
Confidence 233566 899999999999999999887765
No 65
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.44 E-value=7.6e-07 Score=84.13 Aligned_cols=89 Identities=19% Similarity=0.377 Sum_probs=72.5
Q ss_pred cccchhcccceeEEEEeceeeeeecChhhhcC-CCCceeecCCCceecccccccCceeEEEEEecCCCCCcceEEeccCH
Q psy3833 990 PKRFTMKAYKRLWVTCRELQLRFYKSREDAQH-SSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENE 1068 (1087)
Q Consensus 990 ~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~-~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e 1068 (1087)
.||-..+.+|++||++++..|.|||++.+... ...+..++|.||.|..+-+-++++++++|..| +..+.+|.++||
T Consensus 15 g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~---~~~~~~f~a~s~ 91 (104)
T cd01253 15 GKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDYTKKKHVFRLRLP---DGAEFLFQAPDE 91 (104)
T ss_pred CcccCCCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCcccCceEEEEEec---CCCEEEEECCCH
Confidence 56667999999999999999999998764421 11223679999999888777888899999865 448999999999
Q ss_pred HHHHHHHHHhhhh
Q psy3833 1069 EQYASWMAACRLQ 1081 (1087)
Q Consensus 1069 ~qya~wmaacrl~ 1081 (1087)
+...+|+.|.+-|
T Consensus 92 e~~~~Wi~aL~~~ 104 (104)
T cd01253 92 EEMSSWVRALKSA 104 (104)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998753
No 66
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.42 E-value=1.6e-06 Score=76.62 Aligned_cols=97 Identities=19% Similarity=0.302 Sum_probs=81.0
Q ss_pred ccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceeccccccc--CceeEEEEEecCCCCC
Q psy3833 981 LYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLS--QGKFIIKLEVPAADGM 1058 (1087)
Q Consensus 981 l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~--~~k~~ikl~~p~~~~~ 1058 (1087)
+.+||+....+ ....++++|+++.+..|.+|+++++....++...++|.+|+|....+.. ..++++.|..+..
T Consensus 3 ~~G~l~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~--- 77 (102)
T smart00233 3 KEGWLYKKSGG--KKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGITVREAPDPDSAKKPHCFEIKTADR--- 77 (102)
T ss_pred eeEEEEEeCCC--ccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcCEEEeCCCCccCCCceEEEEEecCC---
Confidence 45777765444 5678999999999999999999887554678889999999999888865 6788888876544
Q ss_pred cceEEeccCHHHHHHHHHHhhhhh
Q psy3833 1059 SEMFLRCENEEQYASWMAACRLQL 1082 (1087)
Q Consensus 1059 ~e~~l~~~~e~qya~wmaacrl~~ 1082 (1087)
..++++|+|++...+|+.+.+.++
T Consensus 78 ~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 78 RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 789999999999999999999876
No 67
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=98.42 E-value=7e-07 Score=85.70 Aligned_cols=83 Identities=14% Similarity=0.247 Sum_probs=67.7
Q ss_pred cchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccC-------ceeEEEEEecCCCCCcceEEe
Q psy3833 992 RFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQ-------GKFIIKLEVPAADGMSEMFLR 1064 (1087)
Q Consensus 992 ~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~-------~k~~ikl~~p~~~~~~e~~l~ 1064 (1087)
+++.|+||+-||++++..|+|||++.+.. ..|.-.|+|.+|.++-++.... .+|++++.-|. .-.||.
T Consensus 15 ~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~-~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~----r~~yl~ 89 (106)
T cd01238 15 KTSPLNYKERLFVLTKSKLSYYEGDFEKR-GSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDE----GTLYVF 89 (106)
T ss_pred CCCCCCceeEEEEEcCCEEEEECCCcccc-cCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCC----CeEEEE
Confidence 47788999999999999999999987753 4588899999997765554432 47888886643 358999
Q ss_pred ccCHHHHHHHHHHhh
Q psy3833 1065 CENEEQYASWMAACR 1079 (1087)
Q Consensus 1065 ~~~e~qya~wmaacr 1079 (1087)
|+||++..+|+.|.+
T Consensus 90 A~s~~er~~WI~ai~ 104 (106)
T cd01238 90 APTEELRKRWIKALK 104 (106)
T ss_pred cCCHHHHHHHHHHHH
Confidence 999999999999876
No 68
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=98.41 E-value=9e-07 Score=82.93 Aligned_cols=79 Identities=16% Similarity=0.281 Sum_probs=65.0
Q ss_pred hhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCCCCcceEEeccCHHHHHH
Q psy3833 994 TMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYAS 1073 (1087)
Q Consensus 994 ~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~qya~ 1073 (1087)
-+|++|+=|||+++-.|+|||++.+.. ..|.-.|+|++|-+.++ ..+++++.|.++ +....||+++|+++-.+
T Consensus 11 ~~k~Wk~RwFvL~~g~L~Yyk~~~~~~-~~~~G~I~L~~~~i~~~---~~~~~~F~i~~~---~~r~~~L~A~s~~e~~~ 83 (91)
T cd01247 11 YINGWQDRYFVLKEGNLSYYKSEAEKS-HGCRGSIFLKKAIIAAH---EFDENRFDISVN---ENVVWYLRAENSQSRLL 83 (91)
T ss_pred ccCCCceEEEEEECCEEEEEecCccCc-CCCcEEEECcccEEEcC---CCCCCEEEEEeC---CCeEEEEEeCCHHHHHH
Confidence 379999999999999999999988865 35788999999998876 334555555543 34789999999999999
Q ss_pred HHHHhh
Q psy3833 1074 WMAACR 1079 (1087)
Q Consensus 1074 wmaacr 1079 (1087)
|+.|..
T Consensus 84 Wi~al~ 89 (91)
T cd01247 84 WMDSVV 89 (91)
T ss_pred HHHHHh
Confidence 999864
No 69
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.40 E-value=1.2e-06 Score=82.35 Aligned_cols=91 Identities=22% Similarity=0.401 Sum_probs=69.3
Q ss_pred ccccceecccccchhcccceeEEEEec--eeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCCCC
Q psy3833 981 LYDYLRCLKPKRFTMKAYKRLWVTCRE--LQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGM 1058 (1087)
Q Consensus 981 l~~~lk~~~~~~~~lk~~k~~w~~~~~--~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~ 1058 (1087)
|++||.---.+.. +|++|+-|||+++ ..|+|||++.|.. |+-.|+|.+|.++.+..-. ++++.|.-| .
T Consensus 1 l~GyL~K~g~~~~-~K~WkkRWFvL~~~~~~L~Yyk~~~d~~---p~G~I~L~~~~~~~~~~~~--~~~F~i~t~----~ 70 (95)
T cd01265 1 LCGYLHKIEGKGP-LRGRRSRWFALDDRTCYLYYYKDSQDAK---PLGRVDLSGAAFTYDPREE--KGRFEIHSN----N 70 (95)
T ss_pred CcccEEEecCCCC-CcCceeEEEEEcCCCcEEEEECCCCccc---ccceEECCccEEEcCCCCC--CCEEEEEcC----C
Confidence 5677654422323 8999999999985 4799999987754 8999999999998776543 455554432 3
Q ss_pred cceEEeccCHHHHHHHHHHhhhh
Q psy3833 1059 SEMFLRCENEEQYASWMAACRLQ 1081 (1087)
Q Consensus 1059 ~e~~l~~~~e~qya~wmaacrl~ 1081 (1087)
.-.+|+|++|++-.+|+.|...+
T Consensus 71 r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 71 EVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred cEEEEECCCHHHHHHHHHHHHhh
Confidence 45899999999999999998765
No 70
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.37 E-value=1.9e-06 Score=78.63 Aligned_cols=81 Identities=21% Similarity=0.459 Sum_probs=68.5
Q ss_pred hcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCCCCcceEEeccCHHHHHHH
Q psy3833 995 MKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASW 1074 (1087)
Q Consensus 995 lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~qya~w 1074 (1087)
.+.+|+-||++++..|+||+++++.. ..|...++|.+|.|.+.-+-.+++|++.|..|. ..++|..+|++++.+|
T Consensus 13 ~~~W~kr~~~L~~~~l~~y~~~~~~~-~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~----~~~~f~a~s~~~~~~W 87 (94)
T cd01250 13 NKEWKKRWFVLKNGQLTYHHRLKDYD-NAHVKEIDLRRCTVRHNGKQPDRRFCFEVISPT----KTWHFQADSEEERDDW 87 (94)
T ss_pred CCCceEEEEEEeCCeEEEEcCCcccc-cccceEEeccceEEecCccccCCceEEEEEcCC----cEEEEECCCHHHHHHH
Confidence 78999999999999999999977643 457788999999998876655578888887654 6789999999999999
Q ss_pred HHHhhh
Q psy3833 1075 MAACRL 1080 (1087)
Q Consensus 1075 maacrl 1080 (1087)
+.|.+-
T Consensus 88 i~al~~ 93 (94)
T cd01250 88 ISAIQE 93 (94)
T ss_pred HHHHhc
Confidence 999764
No 71
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=98.36 E-value=1.2e-06 Score=82.95 Aligned_cols=88 Identities=17% Similarity=0.291 Sum_probs=68.8
Q ss_pred ccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceeccccccc---CceeEEEEEecCCCCCc
Q psy3833 983 DYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLS---QGKFIIKLEVPAADGMS 1059 (1087)
Q Consensus 983 ~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~---~~k~~ikl~~p~~~~~~ 1059 (1087)
+||+- |.. ..|.+|+-||++++..|.|||++.+. +|+..|+|..|+|.++-+.. ++.+|+.+.- ...
T Consensus 6 G~L~K-kg~--~~k~WkkRwfvL~~~~L~yyk~~~~~---~~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t----~~r 75 (100)
T cd01233 6 GYLNF-PEE--TNSGWTRRFVVVRRPYLHIYRSDKDP---VERGVINLSTARVEHSEDQAAMVKGPNTFAVCT----KHR 75 (100)
T ss_pred EEEEe-eCC--CCCCcEEEEEEEECCEEEEEccCCCc---cEeeEEEecccEEEEccchhhhcCCCcEEEEEC----CCC
Confidence 66654 233 34999999999999999999997653 48899999999998776653 3457777632 245
Q ss_pred ceEEeccCHHHHHHHHHHhhh
Q psy3833 1060 EMFLRCENEEQYASWMAACRL 1080 (1087)
Q Consensus 1060 e~~l~~~~e~qya~wmaacrl 1080 (1087)
-.+|.|+||++..+||.|.+-
T Consensus 76 t~~~~A~s~~e~~~Wi~ai~~ 96 (100)
T cd01233 76 GYLFQALSDKEMIDWLYALNP 96 (100)
T ss_pred EEEEEcCCHHHHHHHHHHhhh
Confidence 599999999999999999764
No 72
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=98.24 E-value=3.1e-07 Score=96.00 Aligned_cols=159 Identities=21% Similarity=0.285 Sum_probs=90.7
Q ss_pred eeeecCccccccccCCCC-cccccCccccccccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEEecCC
Q psy3833 699 LIKVKGKCTTDHISAAGP-WLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDE 777 (1087)
Q Consensus 699 Ll~~gd~iTTDhIsPAG~-~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG~ 777 (1087)
.+|+.+.++||++|||.. |. |...+-=+..|+... .+| .+- .-+.+|+.|.+.+. .|.
T Consensus 3 vfkV~GEtnTDdLSPa~dA~S--RpDiPLHA~aMl~~~--------------~~~---~l~-~i~~lk~kg~~la~-vGd 61 (204)
T PF06434_consen 3 VFKVPGETNTDDLSPAPDAWS--RPDIPLHALAMLKNR--------------RPG---PLE-QIEELKEKGHPLAY-VGD 61 (204)
T ss_dssp EEEEEEEEEHHHHS-GGGGGG--TTSHHHHHCCTT-S---------------BTT---SHH-HHHHHHTTSS-EEE-EEE
T ss_pred EEEeCCccccCcCCccccccC--CCCchHHHHHhcccc--------------ccc---HHH-HHHHHHHcCCcEEE-ecC
Confidence 468899999999999964 43 333222233344321 112 122 23456788888554 489
Q ss_pred CcCCCccchhhcccccccc------------ceEEEEechhHHHhhhhccCccceEEecCCCCcccCCCCCEEEEccccC
Q psy3833 778 NYGEGSSREHAALEPRHLG------------GRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRISLVGLKD 845 (1087)
Q Consensus 778 nyG~GSSRE~Aa~~~r~lG------------v~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l~~gD~i~I~~l~~ 845 (1087)
--|.||||--|.-...+.+ .-.||...+|.||+.-+--.|-||+++. ...+..||.|+|.-.
T Consensus 62 vvGtGSSRKSa~NSvlW~~G~diP~VPnKr~GGvv~G~~IAPIFfnT~edsGaLPIe~d----v~~l~~Gdvi~I~p~-- 135 (204)
T PF06434_consen 62 VVGTGSSRKSATNSVLWHMGEDIPYVPNKRTGGVVIGGKIAPIFFNTAEDSGALPIECD----VSSLNTGDVITIYPY-- 135 (204)
T ss_dssp EEEES---THHHHHHHHHHSEEETTEEEEEE--EEEEEEE-HHHHHHHHHTT-EEEE-------TT--TT-EEEEETT--
T ss_pred ccccCcccchhhhhhhhhccCCCCCCCccCccCeEECCEEcceEeccccccCCceEEEe----ccccCCCcEEEEecC--
Confidence 9999999999876654432 3468889999999999999999999864 467999999999732
Q ss_pred cCCCCcEEEEEEecCCeEEEEEEEecC-CHHHHHHHHhCCCCCchhhhcccccc
Q psy3833 846 LAPGKPVTAQIKHADGKVEEIKLNHSM-NEQQITWFQAELPTRIPAWLDSSLSI 898 (1087)
Q Consensus 846 l~pg~~v~v~v~~~dG~~~~~~l~~~l-t~~E~e~~~aGGiLn~sr~l~ss~sl 898 (1087)
.| + +.+.+|+ +..++.| ++.-++.+||||-++ |.+.|+|
T Consensus 136 --~g---k--i~~~~ge---v~~~f~l~p~~l~DevrAGGri~----LiiGR~L 175 (204)
T PF06434_consen 136 --EG---K--IYKENGE---VISTFELKPQTLLDEVRAGGRIP----LIIGRGL 175 (204)
T ss_dssp --TT---E--EEETT-----EEEE---S-TCHHHHHHHTSHHH----HHHHHHH
T ss_pred --Cc---E--EECCCCC---EEEEeecCchhHHHHHhcCCcEE----EEechHH
Confidence 23 2 2234554 3333445 345568899999877 5555554
No 73
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.21 E-value=4.2e-06 Score=82.85 Aligned_cols=98 Identities=14% Similarity=0.389 Sum_probs=77.9
Q ss_pred ccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceeccc------ccccCceeEEEEEecC
Q psy3833 981 LYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPD------VNLSQGKFIIKLEVPA 1054 (1087)
Q Consensus 981 l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pd------v~~~~~k~~ikl~~p~ 1054 (1087)
-.+||.+|.... ..|.+|++||++++..|+|||.+++....+|+-.|.|++|.+..- .+-....|.|.++.|.
T Consensus 3 ~~GfL~~~q~~~-~~k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~ 81 (122)
T cd01263 3 YHGFLTMFEDTS-GFGAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPK 81 (122)
T ss_pred cceeEEEEeccC-CCCCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEeccc
Confidence 458999987554 889999999999999999999999866678999999999987432 4455556777777776
Q ss_pred CC-----------C---CcceEEeccCHHHHHHHHHHhh
Q psy3833 1055 AD-----------G---MSEMFLRCENEEQYASWMAACR 1079 (1087)
Q Consensus 1055 ~~-----------~---~~e~~l~~~~e~qya~wmaacr 1079 (1087)
-+ + ..-+||.-|+++.=.+||+|..
T Consensus 82 ~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain 120 (122)
T cd01263 82 METDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLN 120 (122)
T ss_pred ccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHh
Confidence 21 2 2337899999999999999864
No 74
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=98.19 E-value=5.7e-06 Score=79.07 Aligned_cols=83 Identities=25% Similarity=0.460 Sum_probs=63.8
Q ss_pred hhcccceeEEEEeceeeeeecChhhhcCCCCceeecCC----Cceeccccc---ccCceeEEEEEecCCCCCcceEEecc
Q psy3833 994 TMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLR----GCEVTPDVN---LSQGKFIIKLEVPAADGMSEMFLRCE 1066 (1087)
Q Consensus 994 ~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~----gcev~pdv~---~~~~k~~ikl~~p~~~~~~e~~l~~~ 1066 (1087)
..|.+|+-||++++..|+|||++.+.. |.-.|.|. ||+|...+. -..+.|++.+.-| .--.+|.|+
T Consensus 12 ~~k~wkkRwFvL~~~~L~Yyk~~~d~~---~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~----~Rty~l~a~ 84 (103)
T cd01251 12 HTEGFKKRWFTLDDRRLMYFKDPLDAF---AKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP----ERKFLFACE 84 (103)
T ss_pred CCCCceeEEEEEeCCEEEEECCCCCcC---cCcEEEeeccccceeEeccCCccccccccceEEEEeC----CeEEEEECC
Confidence 368999999999999999999988754 66667775 667754322 1223358887666 456889999
Q ss_pred CHHHHHHHHHHhhhhhc
Q psy3833 1067 NEEQYASWMAACRLQLT 1083 (1087)
Q Consensus 1067 ~e~qya~wmaacrl~~~ 1083 (1087)
+|++--+||+|.+-++.
T Consensus 85 s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 85 TEQDRREWIAAFQNVLS 101 (103)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999987764
No 75
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.19 E-value=8.8e-06 Score=71.95 Aligned_cols=96 Identities=22% Similarity=0.323 Sum_probs=73.4
Q ss_pred ccceecccccc-hhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCCCCcce
Q psy3833 983 DYLRCLKPKRF-TMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEM 1061 (1087)
Q Consensus 983 ~~lk~~~~~~~-~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~ 1061 (1087)
++|+...+... ..+.++++|+++.+..|.+|+.+.+... .. ..+.|.+..|..+-+..+.++++.+..+.+ +...+
T Consensus 3 g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~-~~-~~~~l~~~~v~~~~~~~~~~~~F~i~~~~~-~~~~~ 79 (99)
T cd00900 3 GYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEI-KP-GSIPLSEISVEEDPDGSDDPNCFAIVTKDR-GRRVF 79 (99)
T ss_pred cEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcC-CC-CEEEccceEEEECCCCCCCCceEEEECCCC-CcEEE
Confidence 45555544433 5678999999999999999999876652 21 467788776666554446778888877765 77899
Q ss_pred EEeccCHHHHHHHHHHhhhh
Q psy3833 1062 FLRCENEEQYASWMAACRLQ 1081 (1087)
Q Consensus 1062 ~l~~~~e~qya~wmaacrl~ 1081 (1087)
+|.|+|++...+||+|++-|
T Consensus 80 ~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 80 VFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred EEEcCCHHHHHHHHHHHhcC
Confidence 99999999999999999854
No 76
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.12 E-value=1.4e-05 Score=70.08 Aligned_cols=94 Identities=26% Similarity=0.398 Sum_probs=75.6
Q ss_pred ccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCCCCcceE
Q psy3833 983 DYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMF 1062 (1087)
Q Consensus 983 ~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~ 1062 (1087)
++|+...... ...+++.|+++.+..|.+|++..+.....|...++|.+|+|...-+-.+..+++.|..... ..++
T Consensus 3 G~l~~~~~~~--~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~---~~~~ 77 (96)
T cd00821 3 GYLLKKTGKL--RKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSGAEVEESPDDSGRKNCFEIRTPDG---RSYL 77 (96)
T ss_pred chhhhhhChh--hCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCCCEEEECCCcCCCCcEEEEecCCC---cEEE
Confidence 4444443333 5778999999999999999987664234577899999999999888777788898886654 8999
Q ss_pred EeccCHHHHHHHHHHhhhh
Q psy3833 1063 LRCENEEQYASWMAACRLQ 1081 (1087)
Q Consensus 1063 l~~~~e~qya~wmaacrl~ 1081 (1087)
++|+|++...+||++.+.|
T Consensus 78 ~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 78 LQAESEEEREEWIEALQSA 96 (96)
T ss_pred EEeCCHHHHHHHHHHHhcC
Confidence 9999999999999998754
No 77
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=98.07 E-value=1.4e-05 Score=76.63 Aligned_cols=87 Identities=22% Similarity=0.330 Sum_probs=69.4
Q ss_pred ccccceecccccchhcccceeEEEEece------eeeeecChhhhc-C-CCCceeecCCCceecccccccCceeEEEEEe
Q psy3833 981 LYDYLRCLKPKRFTMKAYKRLWVTCREL------QLRFYKSREDAQ-H-SSPINEFSLRGCEVTPDVNLSQGKFIIKLEV 1052 (1087)
Q Consensus 981 l~~~lk~~~~~~~~lk~~k~~w~~~~~~------~l~~~k~~~~~~-~-~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~ 1052 (1087)
.++||+- +|.+|+=|||++.. +|.|||++-+.. + .+|.-.|+|+.|..+-...=+.+||+|.|.-
T Consensus 4 k~GyL~K-------~K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~t 76 (101)
T cd01257 4 KSGYLRK-------QKSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADAKHRHLIALYT 76 (101)
T ss_pred EEEEEeE-------ecCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccccccCeEEEEEe
Confidence 3577754 39999999999998 899999976543 2 5799999999998764443355679999977
Q ss_pred cCCCCCcceEEeccCHHHHHHHHHHh
Q psy3833 1053 PAADGMSEMFLRCENEEQYASWMAAC 1078 (1087)
Q Consensus 1053 p~~~~~~e~~l~~~~e~qya~wmaac 1078 (1087)
|. .=.+|.||+|+.-.+|+.+.
T Consensus 77 ~d----r~f~l~aese~E~~~Wi~~i 98 (101)
T cd01257 77 RD----EYFAVAAENEAEQDSWYQAL 98 (101)
T ss_pred CC----ceEEEEeCCHHHHHHHHHHH
Confidence 54 36899999999999999874
No 78
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=98.02 E-value=1.8e-05 Score=75.97 Aligned_cols=94 Identities=16% Similarity=0.290 Sum_probs=67.3
Q ss_pred ccccceeccccc-chhcccceeEEEEecee-------eeeecChhhhcCCCCceeecCCCceeccc-cc--ccCceeEEE
Q psy3833 981 LYDYLRCLKPKR-FTMKAYKRLWVTCRELQ-------LRFYKSREDAQHSSPINEFSLRGCEVTPD-VN--LSQGKFIIK 1049 (1087)
Q Consensus 981 l~~~lk~~~~~~-~~lk~~k~~w~~~~~~~-------l~~~k~~~~~~~~~~~~~~~l~gcev~pd-v~--~~~~k~~ik 1049 (1087)
|.+||+-..++. +..+.+|+-||++++.. |.|||++.+ .+|...|+|..|+++.+ +. ...+++.+.
T Consensus 1 ~eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~---~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~ 77 (108)
T cd01266 1 LEGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRK---FKLEFVIDLESCSQVDPGLLCTAGNCIFGYG 77 (108)
T ss_pred CceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCC---CccceEEECCccEEEcccccccccCcccceE
Confidence 457777765543 36789999999999876 599998665 35889999999988643 11 222343333
Q ss_pred EEecCCCCCcceEEeccCHHHHHHHHHHhh
Q psy3833 1050 LEVPAADGMSEMFLRCENEEQYASWMAACR 1079 (1087)
Q Consensus 1050 l~~p~~~~~~e~~l~~~~e~qya~wmaacr 1079 (1087)
+.+..+ ..-.||.++||+...+||.|-|
T Consensus 78 f~i~t~--~r~y~l~A~s~ee~~~Wi~~I~ 105 (108)
T cd01266 78 FDIETI--VRDLYLVAKNEEEMTLWVNCIC 105 (108)
T ss_pred EEEEeC--CccEEEEECCHHHHHHHHHHHH
Confidence 333332 4579999999999999999864
No 79
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=97.94 E-value=3.4e-05 Score=72.05 Aligned_cols=81 Identities=19% Similarity=0.228 Sum_probs=60.8
Q ss_pred hhcccceeEEEEe--ceeeeeecChhhhcCCCCceeecCCCceeccc-ccc------cCceeEEEEEecCCCCCcceEEe
Q psy3833 994 TMKAYKRLWVTCR--ELQLRFYKSREDAQHSSPINEFSLRGCEVTPD-VNL------SQGKFIIKLEVPAADGMSEMFLR 1064 (1087)
Q Consensus 994 ~lk~~k~~w~~~~--~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pd-v~~------~~~k~~ikl~~p~~~~~~e~~l~ 1064 (1087)
.+|.+|+-||+++ +..|.|||++.+.. |...|+|+.|+.+-. ..- ..+++++.+.- ...-.+|.
T Consensus 11 ~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~---~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t----~~r~~~~~ 83 (101)
T cd01235 11 LLKGWKPRWFVLDPDKHQLRYYDDFEDTA---EKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKT----SKRTYNFL 83 (101)
T ss_pred CCCCccceEEEEECCCCEEEEecCCCCCc---cceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEe----CCceEEEE
Confidence 5799999999999 45999999976543 778999999865432 211 13456666532 23568999
Q ss_pred ccCHHHHHHHHHHhhhh
Q psy3833 1065 CENEEQYASWMAACRLQ 1081 (1087)
Q Consensus 1065 ~~~e~qya~wmaacrl~ 1081 (1087)
++++++..+|+.|.|-.
T Consensus 84 a~s~~e~~~Wi~ai~~~ 100 (101)
T cd01235 84 AENINEAQRWKEKIQQC 100 (101)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999998754
No 80
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.74 E-value=0.00011 Score=70.25 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=63.5
Q ss_pred ccc-cchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccc--cCceeEEEEEecCCCCCcceEEec
Q psy3833 989 KPK-RFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNL--SQGKFIIKLEVPAADGMSEMFLRC 1065 (1087)
Q Consensus 989 ~~~-~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~--~~~k~~ikl~~p~~~~~~e~~l~~ 1065 (1087)
+++ |++ ++||+-||++.+++|+|||++. ..|.-.|+|..+-.+=+|.- -+.+|++.+.-|. .=.|+-|
T Consensus 12 ~~~~~~~-~n~KkRwF~Lt~~~L~Y~k~~~----~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~----r~~yi~a 82 (98)
T cd01244 12 RLAWKKV-LHFKKRYFQLTTTHLSWAKDVQ----CKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCED----DTMQLQF 82 (98)
T ss_pred cCCCccC-cCCceeEEEECCCEEEEECCCC----CceeeeEEccceEEEEEcCCcccCCCceEEEEeCC----CeEEEEC
Confidence 344 445 8999999999999999999865 45777888877666544432 3345888886653 3699999
Q ss_pred cCHHHHHHHHHHhh
Q psy3833 1066 ENEEQYASWMAACR 1079 (1087)
Q Consensus 1066 ~~e~qya~wmaacr 1079 (1087)
+||++-.+|+.|.|
T Consensus 83 ~s~~E~~~Wi~al~ 96 (98)
T cd01244 83 EAPVEATDWLNALE 96 (98)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999876
No 81
>KOG0453|consensus
Probab=97.64 E-value=7.4e-06 Score=96.94 Aligned_cols=84 Identities=23% Similarity=0.279 Sum_probs=71.1
Q ss_pred HHHHHHHHhCCCCCchhhhcccc-cccccccccCceeeeec---------ceeeeeccCccccceeeeeeecccCCCCCC
Q psy3833 874 EQQITWFQAELPTRIPAWLDSSL-SIYEQGVKEFDTLRLRF---------KFYSIYDLNAKTDAVQVNLQSNVAQPTDTS 943 (1087)
Q Consensus 874 ~~E~e~~~aGGiLn~sr~l~ss~-sl~~q~~~E~~~l~lrF---------kyy~f~d~n~K~d~vri~~q~~~~~~~~~~ 943 (1087)
+..+.| ++.|+ +|+-.+. ..-|.+.|||++|+||| ||++||++|+|+ |..++++|++|.||+
T Consensus 642 ~~~~~y-k~~g~----~wvvv~~~NyGeGSsREhAAlepr~lGg~~ii~kSFarIhetNlkk---qglLpLtfanpadyd 713 (778)
T KOG0453|consen 642 DTARDY-KKHGI----RWVVVGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKK---QGLLPLTFANPADYD 713 (778)
T ss_pred chhhhH-HhcCc----eeEEEcccccCCCcchhhhhhchhhcCCcEEEeehhHHHHHhhhhh---cceeeeeccCHHHhh
Confidence 344444 44442 7999887 89999999999999999 999999999999 999999999999999
Q ss_pred CCCCchhhHHHH-HhhcccccCCcccc
Q psy3833 944 SISLADDDIDAA-LTDLQVTLEGSHIS 969 (1087)
Q Consensus 944 ~~~~~~Ddid~a-L~~Lev~~eg~~~~ 969 (1087)
++. +.|.++.. |+++. +|++++
T Consensus 714 Ki~-~~d~~~~~~L~~~~---~gkp~t 736 (778)
T KOG0453|consen 714 KIR-PADKVSIKGLTRRT---PGKPLT 736 (778)
T ss_pred hcC-hhcccchhhhhhhc---CCCcee
Confidence 999 88888887 88877 666653
No 82
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.55 E-value=0.0003 Score=68.04 Aligned_cols=80 Identities=20% Similarity=0.374 Sum_probs=62.4
Q ss_pred chhcccceeEEEEec-eeeeeecChhhhcCCCCceeecCCCceeccc-ccccCceeEEEEEecCCCCCcceEEeccCHHH
Q psy3833 993 FTMKAYKRLWVTCRE-LQLRFYKSREDAQHSSPINEFSLRGCEVTPD-VNLSQGKFIIKLEVPAADGMSEMFLRCENEEQ 1070 (1087)
Q Consensus 993 ~~lk~~k~~w~~~~~-~~l~~~k~~~~~~~~~~~~~~~l~gcev~pd-v~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~q 1070 (1087)
+..|++|+=|||+++ ..|+|||.+... ..|.-.|+|.-|+.+-+ ....+++|+|.+.-|. .-.||.||||++
T Consensus 19 ~~~K~WkrRWFvL~~~~~L~y~~d~~~~--~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp~----R~f~l~Aete~E 92 (104)
T cd01236 19 HRSKRWQRRWFILYDHGLLTYALDEMPT--TLPQGTIDMNQCTDVVDAEARTGQKFSICILTPD----KEHFIKAETKEE 92 (104)
T ss_pred eeeccccceEEEEeCCCEEEEeeCCCCC--cccceEEEccceEEEeecccccCCccEEEEECCC----ceEEEEeCCHHH
Confidence 578999999999984 677777654311 23777899999986654 3556778999976664 689999999999
Q ss_pred HHHHHHHh
Q psy3833 1071 YASWMAAC 1078 (1087)
Q Consensus 1071 ya~wmaac 1078 (1087)
-.+||.+.
T Consensus 93 ~~~Wi~~l 100 (104)
T cd01236 93 ISWWLNML 100 (104)
T ss_pred HHHHHHHH
Confidence 99999874
No 83
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.48 E-value=0.00041 Score=66.51 Aligned_cols=79 Identities=16% Similarity=0.288 Sum_probs=65.6
Q ss_pred hcccceeEEEEec----eeeeeecChhhhcCCCCceeecCCCceecc-cccccCceeEEEEEecCCCCCcceEEeccCHH
Q psy3833 995 MKAYKRLWVTCRE----LQLRFYKSREDAQHSSPINEFSLRGCEVTP-DVNLSQGKFIIKLEVPAADGMSEMFLRCENEE 1069 (1087)
Q Consensus 995 lk~~k~~w~~~~~----~~l~~~k~~~~~~~~~~~~~~~l~gcev~p-dv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~ 1069 (1087)
.|..|+=||++.+ ..|+|||++-+. +|+-.+.|..|.|.| +-++.++.||+.|..|.- ..+|.-|.+.+
T Consensus 13 ~K~wK~rwF~l~~~~s~~~l~yf~~~~~~---~p~gli~l~~~~V~~v~ds~~~r~~cFel~~~~~---~~~y~~~a~~~ 86 (98)
T cd01245 13 TKLWKTLYFALILDGSRSHESLLSSPKKT---KPIGLIDLSDAYLYPVHDSLFGRPNCFQIVERAL---PTVYYSCRSSE 86 (98)
T ss_pred ccccceeEEEEecCCCCceEEEEcCCCCC---CccceeeccccEEEEccccccCCCeEEEEecCCC---CeEEEEeCCHH
Confidence 7899999999986 999999997764 488888999998887 235568889999977753 26888888779
Q ss_pred HHHHHHHHhh
Q psy3833 1070 QYASWMAACR 1079 (1087)
Q Consensus 1070 qya~wmaacr 1079 (1087)
++.+||.+.|
T Consensus 87 er~~Wi~~l~ 96 (98)
T cd01245 87 ERDKWIESLQ 96 (98)
T ss_pred HHHHHHHHHh
Confidence 9999999865
No 84
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=97.39 E-value=0.00046 Score=67.70 Aligned_cols=86 Identities=20% Similarity=0.380 Sum_probs=62.9
Q ss_pred hhcccceeEEEEeceeeeeecChhhhc-----------CCCCceeecCCCceecccccccCceeEEEEEecCCCCCcceE
Q psy3833 994 TMKAYKRLWVTCRELQLRFYKSREDAQ-----------HSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMF 1062 (1087)
Q Consensus 994 ~lk~~k~~w~~~~~~~l~~~k~~~~~~-----------~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~ 1062 (1087)
.-+.+|+||++++++.|.+||.+.... +..|+..|+|.+|.+.+..+-+++|+.++|..+. -.|..
T Consensus 22 ~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY~Kr~~VFrL~~~d---g~e~L 98 (119)
T PF15410_consen 22 SKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDYTKRKNVFRLRTAD---GSEYL 98 (119)
T ss_dssp S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTBTTCSSEEEEE-TT---S-EEE
T ss_pred CCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCcccccCCeEEEEEeCC---CCEEE
Confidence 678999999999999999999965422 1234556999999999999999999999998653 47899
Q ss_pred EeccCHHHHHHHHHHhhhhh
Q psy3833 1063 LRCENEEQYASWMAACRLQL 1082 (1087)
Q Consensus 1063 l~~~~e~qya~wmaacrl~~ 1082 (1087)
+.+.|++.-..|+.+|-.++
T Consensus 99 fqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 99 FQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp EE-SSHHHHHHHHHHHHHH-
T ss_pred EECCCHHHHHHHHHHHhhhc
Confidence 99999999999999997664
No 85
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.33 E-value=0.00089 Score=66.10 Aligned_cols=87 Identities=16% Similarity=0.256 Sum_probs=72.1
Q ss_pred hhcccceeEEEEeceeeeeecChhhhcCC----CCceeecCCCceecccccccCceeEEEEEecCCCCCcceEEeccCHH
Q psy3833 994 TMKAYKRLWVTCRELQLRFYKSREDAQHS----SPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEE 1069 (1087)
Q Consensus 994 ~lk~~k~~w~~~~~~~l~~~k~~~~~~~~----~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~ 1069 (1087)
..+.+|++|+|+++..|++||.+.....+ ..-..|+|.+|.+.+..+-.++++.++|..|.- .|..|.|.+++
T Consensus 22 ~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF~L~~~~g---~~~lfqA~~~e 98 (117)
T cd01230 22 GKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDYSKKPHVFRLRTADW---REFLFQTSSLK 98 (117)
T ss_pred CCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeeccccCCCcEEEEEcCCC---CEEEEECCCHH
Confidence 35789999999999999999997531111 123478999999899999999999999988643 68999999999
Q ss_pred HHHHHHHHhhhhhc
Q psy3833 1070 QYASWMAACRLQLT 1083 (1087)
Q Consensus 1070 qya~wmaacrl~~~ 1083 (1087)
+.-+|..+-+.++.
T Consensus 99 e~~~Wi~~I~~~~~ 112 (117)
T cd01230 99 ELQSWIERINVVAA 112 (117)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888763
No 86
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.25 E-value=0.00085 Score=66.17 Aligned_cols=80 Identities=15% Similarity=0.314 Sum_probs=57.6
Q ss_pred hcccceeEEEEeceeeeeecChhhhcCCCCceeecC-CCceeccccc-----------ccCceeEEEEEecCCCCCcceE
Q psy3833 995 MKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSL-RGCEVTPDVN-----------LSQGKFIIKLEVPAADGMSEMF 1062 (1087)
Q Consensus 995 lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l-~gcev~pdv~-----------~~~~k~~ikl~~p~~~~~~e~~ 1062 (1087)
...+++-||++++..|.||+++++.. |...|-| .++.|...-. ..+++++|++.= +.--+.
T Consensus 30 ~~~w~kRWFvlr~s~L~Y~~~~~~~~---~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t----~~R~~~ 102 (121)
T cd01254 30 CDRWQKRWFIVKESFLAYMDDPSSAQ---ILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITN----SNRSLK 102 (121)
T ss_pred ccCCcceeEEEeCCEEEEEcCCCCCc---eeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEc----CCcEEE
Confidence 35789999999999999999988755 4443333 3333332111 146678887733 344599
Q ss_pred EeccCHHHHHHHHHHhhhh
Q psy3833 1063 LRCENEEQYASWMAACRLQ 1081 (1087)
Q Consensus 1063 l~~~~e~qya~wmaacrl~ 1081 (1087)
|+|+||.|..+|+++.+.|
T Consensus 103 l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 103 LKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred EEeCCHHHHHHHHHHHHhC
Confidence 9999999999999998765
No 87
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.21 E-value=0.0012 Score=63.18 Aligned_cols=85 Identities=19% Similarity=0.342 Sum_probs=57.0
Q ss_pred hhcccceeEEEEe-ceeeeeecChhhhcC--CCCceeecCCCceecccccccCceeEEEEEecCCCCCcceEEeccCHHH
Q psy3833 994 TMKAYKRLWVTCR-ELQLRFYKSREDAQH--SSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQ 1070 (1087)
Q Consensus 994 ~lk~~k~~w~~~~-~~~l~~~k~~~~~~~--~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~q 1070 (1087)
.+|.+|+-||+++ |.+|.|||.+.+... -.|+..+.+.+|++.+--+-..-.|+|..+-+. .--|-.+.||||++
T Consensus 13 ~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~~~--~~~~r~f~a~s~ee 90 (102)
T cd01241 13 YIKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTERPRPNTFIIRCLQWT--TVIERTFHVESPEE 90 (102)
T ss_pred CCCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeeccCCCcceEEEEeccCC--cccCEEEEeCCHHH
Confidence 5799999999999 889999998654221 346777888888774332222234666522111 01123567999999
Q ss_pred HHHHHHHhhh
Q psy3833 1071 YASWMAACRL 1080 (1087)
Q Consensus 1071 ya~wmaacrl 1080 (1087)
-.+||.|.|=
T Consensus 91 ~~eWi~ai~~ 100 (102)
T cd01241 91 REEWIHAIQT 100 (102)
T ss_pred HHHHHHHHHh
Confidence 9999999863
No 88
>PF15409 PH_8: Pleckstrin homology domain
Probab=97.18 E-value=0.00099 Score=62.93 Aligned_cols=83 Identities=13% Similarity=0.341 Sum_probs=59.5
Q ss_pred cccccchhcccceeEEEE--eceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCCCCcceEEec
Q psy3833 988 LKPKRFTMKAYKRLWVTC--RELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRC 1065 (1087)
Q Consensus 988 ~~~~~~~lk~~k~~w~~~--~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~ 1065 (1087)
.|-||--||+|++=||++ ++-.||||+|+.+.. .=-.++++-|-|.. ..++-+|-| ..|++=-.|++
T Consensus 4 lKkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~---~rGsi~v~~a~is~----~~~~~~I~i----dsg~~i~hLKa 72 (89)
T PF15409_consen 4 LKKRRKPLQGWHKRYFVLDFEKGTLSYYRNQNSGK---LRGSIDVSLAVISA----NKKSRRIDI----DSGDEIWHLKA 72 (89)
T ss_pred eeeccccCCCceeEEEEEEcCCcEEEEEecCCCCe---eEeEEEccceEEEe----cCCCCEEEE----EcCCeEEEEEc
Confidence 456677899999777877 999999999976541 22366777774433 233333333 34666556999
Q ss_pred cCHHHHHHHHHHhhhh
Q psy3833 1066 ENEEQYASWMAACRLQ 1081 (1087)
Q Consensus 1066 ~~e~qya~wmaacrl~ 1081 (1087)
.|++.+.+|+.|.+-|
T Consensus 73 ~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 73 KSQEDFQRWVSALQKA 88 (89)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999999876
No 89
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.10 E-value=0.0014 Score=62.77 Aligned_cols=79 Identities=23% Similarity=0.405 Sum_probs=62.1
Q ss_pred ccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceeccccc--ccCceeEEEEEecCC----CCCcceEEeccCHHH
Q psy3833 997 AYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVN--LSQGKFIIKLEVPAA----DGMSEMFLRCENEEQ 1070 (1087)
Q Consensus 997 ~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~--~~~~k~~ikl~~p~~----~~~~e~~l~~~~e~q 1070 (1087)
+-|+||||+.+-+|++||..|| +||-..|.|-|+-|- ||. .-++|||+-|+-|.. -...-+=|-|++.+.
T Consensus 18 gsK~~WFVLt~~~L~wykd~ee---KE~kyilpLdnLk~R-dve~gf~sk~~~FeLfnpd~rnvykd~k~lel~~~~~e~ 93 (110)
T cd01256 18 GSKDYWFVLTSESLSWYKDDEE---KEKKYMLPLDGLKLR-DIEGGFMSRNHKFALFYPDGRNVYKDYKQLELGCETLEE 93 (110)
T ss_pred CCcceEEEEecceeeeeccccc---ccccceeeccccEEE-eecccccCCCcEEEEEcCcccccccchheeeecCCCHHH
Confidence 4899999999999999998665 457778888888653 333 267889999998872 123456699999999
Q ss_pred HHHHHHHhh
Q psy3833 1071 YASWMAACR 1079 (1087)
Q Consensus 1071 ya~wmaacr 1079 (1087)
-..|+|..-
T Consensus 94 vdswkasfl 102 (110)
T cd01256 94 VDSWKASFL 102 (110)
T ss_pred HHHHHHHHH
Confidence 999999863
No 90
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.98 E-value=0.0031 Score=60.90 Aligned_cols=81 Identities=16% Similarity=0.244 Sum_probs=63.2
Q ss_pred hhcccceeEEEEeceeeeeecChhhhcCCCCc-eeecCCCceeccccccc----CceeEEEEEecCCCCCcceEEeccCH
Q psy3833 994 TMKAYKRLWVTCRELQLRFYKSREDAQHSSPI-NEFSLRGCEVTPDVNLS----QGKFIIKLEVPAADGMSEMFLRCENE 1068 (1087)
Q Consensus 994 ~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~-~~~~l~gcev~pdv~~~----~~k~~ikl~~p~~~~~~e~~l~~~~e 1068 (1087)
.+|.+|+=||++++..|+|||.+.+.. |. ..|+|+.|..+=.+.=. ...||+.+.-|. .=.||.+|||
T Consensus 15 ~~K~WkrRwF~L~~~~L~y~K~~~~~~---~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~----rt~~l~A~se 87 (101)
T cd01264 15 FIKRWKTRYFTLSGAQLLFQKGKSKDD---PDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD----KTYILKAKDE 87 (101)
T ss_pred eeecceeEEEEEeCCEEEEEeccCccC---CCCceEEcccceEEeeccccccccccCcEEEEEcCC----ceEEEEeCCH
Confidence 789999999999999999999875543 44 68999999865433211 113888887665 4589999999
Q ss_pred HHHHHHHHHhhhh
Q psy3833 1069 EQYASWMAACRLQ 1081 (1087)
Q Consensus 1069 ~qya~wmaacrl~ 1081 (1087)
.+...|+.+..-|
T Consensus 88 ~e~e~WI~~i~~a 100 (101)
T cd01264 88 KNAEEWLQCLNIA 100 (101)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987655
No 91
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=96.39 E-value=0.014 Score=70.19 Aligned_cols=155 Identities=23% Similarity=0.295 Sum_probs=97.8
Q ss_pred eeeeecCccccccccCCCC-cccccCccccccccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEEecC
Q psy3833 698 VLIKVKGKCTTDHISAAGP-WLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGD 776 (1087)
Q Consensus 698 vLl~~gd~iTTDhIsPAG~-~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG 776 (1087)
+.+|+.+.++||.+|||.. |. |+..+--+.-|+. +..+|. .-..-+..++.|++ ++..|
T Consensus 169 tvFkv~getnTDdLSPa~dA~s--RpDipLHalaMlk--------------~~~~gg---~i~~i~~lk~Kg~~-vayvg 228 (852)
T COG1049 169 TVFKVAGETNTDDLSPAPDAWS--RPDIPLHALAMLK--------------NAREGG---PIKQIEALKQKGHP-VAYVG 228 (852)
T ss_pred EEEEecCccccccCCCCccccc--CCCcchHHHhhcc--------------ccccCC---hHHHHHHHhhcCce-EEEec
Confidence 3468888999999999964 43 3322211122221 112222 11223456778887 55667
Q ss_pred CCcCCCccchhhccccccccc------------eEEEEechhHHHhhhhccCccceEEecCCCCcccCCCCCEEEEcccc
Q psy3833 777 ENYGEGSSREHAALEPRHLGG------------RAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRISLVGLK 844 (1087)
Q Consensus 777 ~nyG~GSSRE~Aa~~~r~lGv------------~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l~~gD~i~I~~l~ 844 (1087)
.--|.||||--|.-...+.+. -.|+..-.+.||+.-+--.|-||+++. ...+..||.|+|.--
T Consensus 229 dvvGtGSSRkSa~NsvlW~~g~diP~VPnkr~ggivlG~~IaPIFfnT~ed~GalPI~~d----v~~l~~Gdvi~i~py- 303 (852)
T COG1049 229 DVVGTGSSRKSATNSVLWHMGDDIPYVPNKRYGGIVLGGKIAPIFFNTMEDAGALPIEVD----VSNLEMGDVIDIYPY- 303 (852)
T ss_pred cccccCcccccccceeeeecCCCCCCCCccCccceeecCeecceeeeehhhcCCCceEee----eccccccceEEeecc-
Confidence 789999999988754433222 245555677899999999999999864 356999999999832
Q ss_pred CcCCCCcEEEEEEecCCeE-EEEEEEecCCHHHHHHHHhCCCCC
Q psy3833 845 DLAPGKPVTAQIKHADGKV-EEIKLNHSMNEQQITWFQAELPTR 887 (1087)
Q Consensus 845 ~l~pg~~v~v~v~~~dG~~-~~~~l~~~lt~~E~e~~~aGGiLn 887 (1087)
.| +++. +.+|+. -+|+++ |+.-++..||||-++
T Consensus 304 ---~g---ki~~-~~~ge~v~~f~lk---t~~lldevrAGgrip 337 (852)
T COG1049 304 ---EG---KIRN-NNTGEVVATFSLK---TDVLLDEVRAGGRIP 337 (852)
T ss_pred ---CC---eeec-cCCCcEEEEeecC---chhHHHHHhcCCcee
Confidence 12 2221 122322 234433 788899999999888
No 92
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=96.13 E-value=0.011 Score=57.74 Aligned_cols=95 Identities=23% Similarity=0.274 Sum_probs=44.5
Q ss_pred ccceecccccchhcccceeEEEEe-ceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEE-----------
Q psy3833 983 DYLRCLKPKRFTMKAYKRLWVTCR-ELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKL----------- 1050 (1087)
Q Consensus 983 ~~lk~~~~~~~~lk~~k~~w~~~~-~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl----------- 1050 (1087)
+||.---|+ ..|++|+-||++. |-.|+|||+..+.... -|.-=+-..|-...+++.+.+-+.+.-
T Consensus 3 G~l~K~~~~--~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (112)
T PF15413_consen 3 GYLYKWGNK--FGKGWKKRWFILRKDGVLSYYKIPRDKKDV-RIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEIH 79 (112)
T ss_dssp EEEEE--TT--S-S--EEEEEEEE-TTEEEEESS--------------TT-SB-SEEEE---GGGT-EEEES-T--SS-S
T ss_pred ceEEEecCC--CCcCccccEEEEEeCCEEEEeecccccccc-cccccchhceEeecccCcccccccccccccCCcccCcC
Confidence 445444444 7899999999999 9999999993332100 000000011112222221111111110
Q ss_pred --EecCCCCCcceEEeccCHHHHHHHHHHhhh
Q psy3833 1051 --EVPAADGMSEMFLRCENEEQYASWMAACRL 1080 (1087)
Q Consensus 1051 --~~p~~~~~~e~~l~~~~e~qya~wmaacrl 1080 (1087)
.....-+...+.||||+++.=..||.|.+=
T Consensus 80 ~~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~ 111 (112)
T PF15413_consen 80 LKVFSIFTPTKTFHLRCETREDRYDWIEALQE 111 (112)
T ss_dssp SEEEEEE-SS-EEEEEESSHHHHHHHHHHHHH
T ss_pred CCCcEEECCCcEEEEEECCHHHHHHHHHHHHh
Confidence 000022467999999998888899998763
No 93
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.04 E-value=0.0035 Score=61.01 Aligned_cols=27 Identities=59% Similarity=1.061 Sum_probs=23.9
Q ss_pred cccccccCChhHHHHHHHHHhhhcCCCC
Q psy3833 88 KSLYLSSLNKEEQYASWMAACRLASKGR 115 (1087)
Q Consensus 88 ~~l~~~~~~~eeq~a~wmaA~~la~kGk 115 (1087)
.+.|++|. +|+||++||+|||+++||+
T Consensus 80 r~y~l~cd-sEeqya~Wmaa~rlas~g~ 106 (106)
T cd01237 80 NEVWLRCD-NEKQYAKWMAACRLASKGK 106 (106)
T ss_pred eEEEEECC-CHHHHHHHHHHHHHhhCCC
Confidence 47889866 7899999999999999996
No 94
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.59 E-value=0.041 Score=52.57 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=54.6
Q ss_pred ceeEEEEeceeeeeecChhhhcC--CCCceeecCCCceecccccccCceeEEEEEecCCCCCcceEEeccCHHHHHHHHH
Q psy3833 999 KRLWVTCRELQLRFYKSREDAQH--SSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMA 1076 (1087)
Q Consensus 999 k~~w~~~~~~~l~~~k~~~~~~~--~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~qya~wma 1076 (1087)
.||.|.|.| .|-|+|++-...+ -.+...++|.+|.|....+ ...++++.|.-+. .-+.|-|+||++-.+||+
T Consensus 20 ~RyffLFnd-~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~~-~~~~~~F~I~~~~----rsf~l~A~s~eEk~~W~~ 93 (101)
T cd01219 20 ERYLFLFND-LLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGDN-LERPHSFLVSGKQ----RCLELQARTQKEKNDWVQ 93 (101)
T ss_pred eEEEEEeCC-EEEEEEcccccCCCcEEEEEEEecccEEEEeCCC-CCcCceEEEecCC----cEEEEEcCCHHHHHHHHH
Confidence 389999999 6666665321110 1244679999999974322 2234555553333 688999999999999999
Q ss_pred Hhhhhhcc
Q psy3833 1077 ACRLQLTE 1084 (1087)
Q Consensus 1077 acrl~~~~ 1084 (1087)
|..-|+.+
T Consensus 94 ai~~~i~~ 101 (101)
T cd01219 94 AIFSIIDE 101 (101)
T ss_pred HHHHHhhC
Confidence 99988753
No 95
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=95.54 E-value=0.04 Score=64.80 Aligned_cols=129 Identities=17% Similarity=0.239 Sum_probs=88.4
Q ss_pred cEEEEEeCCCCccccccCCCCCccccccccchhhhhCCCccceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCE
Q psy3833 449 DQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPF 528 (1087)
Q Consensus 449 ~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~~g~~~~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~ 528 (1087)
.++|+|+.++|+=...-=+.++ .-+||.|+|| |=--+++.++..|.+|++ ++.++++++
T Consensus 265 ~e~i~i~~~dl~~~~~~l~~~~-----------------~~~~D~V~lG-cPH~S~~El~~ia~ll~g---r~~~~~~~~ 323 (400)
T PF04412_consen 265 AERITITDADLEEVYEELNTAG-----------------DEKVDLVALG-CPHLSLEELREIAELLEG---RKVHPNVPL 323 (400)
T ss_pred ceEEEeCHHHHHHHHHHhccCC-----------------CCCCCEEEEC-CCCCCHHHHHHHHHHHhC---CCCCCCceE
Confidence 6788888888754443221111 1269999998 666669999999999997 678888999
Q ss_pred EEecCcHHHHHHHHHcChHHHHHhcCcEEecCCccccccCCCcccccCCcceeEEeecC--CCCCCCCCCCCCcceeecC
Q psy3833 529 NVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYN--RNFTGRNDANPATHAFVTS 606 (1087)
Q Consensus 529 ~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~v~~g~~~~~vsT~N--RNF~gR~G~~p~~~~yLaS 606 (1087)
||+ -|+.|+.++.+.|+.+.|+++|++|..-.| +-... ..+.+.+ ++++-|. .+|-.++. +.++.++|
T Consensus 324 ~i~-t~~~v~~~a~~~G~~~~le~~G~~iv~dTC---~~v~p--~~~~~~~-~v~TnS~K~a~Y~~~~~---g~~v~~~s 393 (400)
T PF04412_consen 324 WIT-TSRAVYELAERMGYVERLEKAGVQIVTDTC---MVVSP--IIPKGYK-VVATNSGKAAHYLPGLC---GVKVRFGS 393 (400)
T ss_pred EEE-CCHHHHHHHHhCCHHHHHHHcCCEEEcccc---ceecc--ccCCCCc-eEEECcHHHHHhccccC---CCceEecC
Confidence 998 678999999999999999999999996665 43321 1223333 2333222 45555552 13566776
Q ss_pred HH
Q psy3833 607 PE 608 (1087)
Q Consensus 607 p~ 608 (1087)
=+
T Consensus 394 l~ 395 (400)
T PF04412_consen 394 LE 395 (400)
T ss_pred HH
Confidence 43
No 96
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.21 E-value=0.079 Score=50.94 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=59.9
Q ss_pred ccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCCCCcceEEeccCHHHHHHHHH
Q psy3833 997 AYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMA 1076 (1087)
Q Consensus 997 ~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~qya~wma 1076 (1087)
..+||||.|.|.=|.+.++..+..+=.+-..++|.+|.|.---+-.+.++|+.|.=| ...+.|.+.++++=++||.
T Consensus 16 ~~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~~~~~~~~~F~I~~~----~ks~~l~A~s~~Ek~~Wi~ 91 (99)
T cd01220 16 LQQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGMLTEESEHEWGVPHCFTIFGG----QCAITVAASTRAEKEKWLA 91 (99)
T ss_pred CceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceEEeeccCCcCCceeEEEEcC----CeEEEEECCCHHHHHHHHH
Confidence 456999999998888887643221113566899999987632222234678887722 4679999999999999999
Q ss_pred Hhhhhhc
Q psy3833 1077 ACRLQLT 1083 (1087)
Q Consensus 1077 acrl~~~ 1083 (1087)
+..=|+.
T Consensus 92 ~i~~aI~ 98 (99)
T cd01220 92 DLSKAIA 98 (99)
T ss_pred HHHHHhh
Confidence 9887764
No 97
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.72 E-value=0.17 Score=49.84 Aligned_cols=97 Identities=14% Similarity=0.293 Sum_probs=74.4
Q ss_pred ccccceecccccch-hcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceec------ccccccCce---eEEEE
Q psy3833 981 LYDYLRCLKPKRFT-MKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVT------PDVNLSQGK---FIIKL 1050 (1087)
Q Consensus 981 l~~~lk~~~~~~~~-lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~------pdv~~~~~k---~~ikl 1050 (1087)
|.+|||+=||..-. -+++++.|+++.|-.|.+|-+.++-.+..|.+.|+|+. ++. .||-=+..| +++++
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~-~fhv~~V~asDVi~a~~kDiP~IF~I 80 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDK-LFHVRPVTQGDVYRADAKEIPKIFQI 80 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCCCcEEEEEccc-eeeeecccHHHeeecCcccCCeEEEE
Confidence 67899997774433 46999999999999999998866654467999999976 443 455444444 67888
Q ss_pred EecCCCCCcceEEeccCHHHHHHHHHHhhh
Q psy3833 1051 EVPAADGMSEMFLRCENEEQYASWMAACRL 1080 (1087)
Q Consensus 1051 ~~p~~~~~~e~~l~~~~e~qya~wmaacrl 1080 (1087)
+-+ +++ -.++|.-++|..=.+|-.|.+=
T Consensus 81 ~~~-~~~-~~lllLA~s~~ek~kWV~~L~~ 108 (112)
T cd01242 81 LYA-NEA-RDLLLLAPQTDEQNKWVSRLVK 108 (112)
T ss_pred EeC-Ccc-ceEEEEeCCchHHHHHHHHHHH
Confidence 774 334 7799999999999999998763
No 98
>COG1679 Predicted aconitase [General function prediction only]
Probab=93.50 E-value=0.23 Score=57.67 Aligned_cols=68 Identities=28% Similarity=0.519 Sum_probs=58.6
Q ss_pred ceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCc
Q psy3833 490 DIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANAC 562 (1087)
Q Consensus 490 ~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGC 562 (1087)
.+|.++|| |--.|++.++..|++|++ ++-++++.+||+ .|+.|..++.++|+++.++++|+++..-.|
T Consensus 289 epdli~iG-cPHaS~~E~~~la~~l~~---r~~~~~~~~~V~-~sr~v~~~a~~~G~~~~le~~g~~vv~DtC 356 (403)
T COG1679 289 EPDLIALG-CPHASLEELRRLAELLKG---RKRPAGVPLYVT-TSRAVYAQARKEGYLAKLEELGVKVVSDTC 356 (403)
T ss_pred CCCEEEeC-CCCCCHHHHHHHHHHHhc---cCCCCCCCEEEE-cCHHHHHHHhhhhhHHHHHHcCCEEecCce
Confidence 58889998 666669999999999997 565677888887 689999999999999999999999987553
No 99
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.32 E-value=0.14 Score=50.56 Aligned_cols=90 Identities=16% Similarity=0.346 Sum_probs=57.4
Q ss_pred cchhcccceeEEEEeceeeeeecChhhhcCCCCce-eecCCCceecccccccC-----ceeEEEEEecC--CCCCcce-E
Q psy3833 992 RFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPIN-EFSLRGCEVTPDVNLSQ-----GKFIIKLEVPA--ADGMSEM-F 1062 (1087)
Q Consensus 992 ~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~-~~~l~gcev~pdv~~~~-----~k~~ikl~~p~--~~~~~e~-~ 1062 (1087)
--.-|.+|++||+++..=|.|+ +|+.+.+..-++ -..|.++.|---++-.. --||+=|..|. ..+..+| |
T Consensus 10 ~~gkKsWKk~~f~LR~SGLYy~-~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~q~~~s~~ik~ 88 (114)
T cd01259 10 ADGKKSWKKYYFVLRSSGLYYF-PKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGDQSKGSQSIKY 88 (114)
T ss_pred cCCCccceEEEEEEeCCeeEEc-cCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEeccccCcccchhhee
Confidence 3456899999999999988776 555554322333 44566776544443111 12343333443 3334554 6
Q ss_pred EeccCHHHHHHHHHHhhhhh
Q psy3833 1063 LRCENEEQYASWMAACRLQL 1082 (1087)
Q Consensus 1063 l~~~~e~qya~wmaacrl~~ 1082 (1087)
|=||||+.--+||.|+|||.
T Consensus 89 lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 89 LCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred eccCCHHHHHHHHHHHHHHh
Confidence 66789999999999999985
No 100
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.31 E-value=0.67 Score=46.45 Aligned_cols=97 Identities=22% Similarity=0.342 Sum_probs=70.0
Q ss_pred ccccceecccccchhcccceeEEEEeceeeeeecChhhhcC---CCCceeecCCCce--ec----ccccccCce---eEE
Q psy3833 981 LYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQH---SSPINEFSLRGCE--VT----PDVNLSQGK---FII 1048 (1087)
Q Consensus 981 l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~---~~~~~~~~l~gce--v~----pdv~~~~~k---~~i 1048 (1087)
|.+|+|+=||...- |+++++|+++.|..|.+|-+.++..+ .+|.+.++||+=+ |. .||-=+.+| |++
T Consensus 4 ~EGwvkvP~~~~~k-rGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If 82 (122)
T cd01243 4 YEGHVKIPKPGGVK-KGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIF 82 (122)
T ss_pred ceeeEeccCCCCcc-cCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEE
Confidence 67899998884433 59999999999999999987665432 5677889996543 32 355445554 667
Q ss_pred EEEec---CCCCCcceEEeccCHHHHHHHHHHh
Q psy3833 1049 KLEVP---AADGMSEMFLRCENEEQYASWMAAC 1078 (1087)
Q Consensus 1049 kl~~p---~~~~~~e~~l~~~~e~qya~wmaac 1078 (1087)
|+-.- .+--..-+||.-+||..=.+|-+|.
T Consensus 83 ~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL 115 (122)
T cd01243 83 RVTTSQISASSSKCSTLMLADTEEEKSKWVGAL 115 (122)
T ss_pred EEEEecccCCCCccEEEEEeCCchHHHHHHHHH
Confidence 77431 1223567899999999999999875
No 101
>KOG3640|consensus
Probab=91.37 E-value=0.21 Score=63.00 Aligned_cols=101 Identities=21% Similarity=0.413 Sum_probs=80.9
Q ss_pred cccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCce------ecccccccCceeEEEEEec
Q psy3833 980 ELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCE------VTPDVNLSQGKFIIKLEVP 1053 (1087)
Q Consensus 980 ~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gce------v~pdv~~~~~k~~ikl~~p 1053 (1087)
|-.+||-+|- -+=.+-.+.||||++.+-.|.|+|..+|...+-||-+|||.-|. +.=|.|-...-|-|-+.-|
T Consensus 991 EYrGFLtmfe-d~sgfGaWhRyWc~L~gg~I~fWk~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~rP 1069 (1116)
T KOG3640|consen 991 EYRGFLTMFE-DGSGFGAWHRYWCALHGGEIKFWKYPDDEKRKVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVWRP 1069 (1116)
T ss_pred eeeeeeeeee-ccCCCchhhhhhHHhcCCeeeeecCcchhcccCcceeeehhhhhccccccchhhhccCCceeEEEeecc
Confidence 5668888886 44555669999999999999999999998878999999999994 3446688888999996655
Q ss_pred CC-----CC---CcceEEeccCHHHHHHHHHHhhhh
Q psy3833 1054 AA-----DG---MSEMFLRCENEEQYASWMAACRLQ 1081 (1087)
Q Consensus 1054 ~~-----~~---~~e~~l~~~~e~qya~wmaacrl~ 1081 (1087)
-- .+ +--+||-.|+-+.-..||++.-=+
T Consensus 1070 l~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~t 1105 (1116)
T KOG3640|consen 1070 LEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDT 1105 (1116)
T ss_pred cccccCcchhhhcceeeeecccHHHHHHHHHHHHHH
Confidence 31 11 247899999999999999986433
No 102
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=89.96 E-value=0.82 Score=53.92 Aligned_cols=71 Identities=24% Similarity=0.508 Sum_probs=56.4
Q ss_pred ceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCccccccC
Q psy3833 490 DIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQ 568 (1087)
Q Consensus 490 ~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~ 568 (1087)
++|.|+|| |=--|++.++..|.+|++ +..++++++||+ -|+.|+ +.+.|+.+.++++|+++..-.|. |+-.
T Consensus 278 ~~dlv~lG-cPH~Sl~E~~~la~ll~g---~~~~~~~~~~v~-t~r~v~--a~~~g~~~~ie~~G~~i~~DtC~-~v~~ 348 (389)
T cd01355 278 EPDLVVLG-CPHASLEELRKLADLLAG---RRVAPSVPLYVT-TSRAVY--AKRMGYVDVIEKLGARVLTDTCM-VVSP 348 (389)
T ss_pred CCCEEEec-CCCCCHHHHHHHHHHhcC---CccCCCCCEEEE-ccHHHH--HhhccHHHHHHHcCCEEEeeecc-eeec
Confidence 48889996 666669999999999986 333345678887 456666 88999999999999999997777 7754
No 103
>KOG3751|consensus
Probab=89.14 E-value=0.67 Score=55.76 Aligned_cols=100 Identities=20% Similarity=0.315 Sum_probs=65.7
Q ss_pred CCCccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCce-eecCCCceecccccccCc---------e
Q psy3833 976 MHVPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPIN-EFSLRGCEVTPDVNLSQG---------K 1045 (1087)
Q Consensus 976 ~~~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~-~~~l~gcev~pdv~~~~~---------k 1045 (1087)
..-||.+++|-+ |--.-|.+|+|||+++---|+|+ .|+-+.+..-++ ..+|.+-.|- +-+.++ -
T Consensus 314 ~~~pei~GfL~~---K~dgkKsWKk~yf~LR~SGLYys-~K~tsk~~r~Lq~l~~~~~snVY--t~i~~rKkyksPTd~~ 387 (622)
T KOG3751|consen 314 SSPPEIQGFLYL---KEDGKKSWKKHYFVLRRSGLYYS-TKGTSKEPRHLQCLADLHSSNVY--TGIGGRKKYKSPTDYG 387 (622)
T ss_pred CCCccccceeee---cccccccceeEEEEEecCcceEc-cCCCCCCchhhHHHHhcccCceE--EeecchhccCCCCCce
Confidence 447999988754 55666899999999999888776 455444322333 2334443321 223333 3
Q ss_pred eEEEEEecCCCCCcceEEec-cCHHHHHHHHHHhhhhh
Q psy3833 1046 FIIKLEVPAADGMSEMFLRC-ENEEQYASWMAACRLQL 1082 (1087)
Q Consensus 1046 ~~ikl~~p~~~~~~e~~l~~-~~e~qya~wmaacrl~~ 1082 (1087)
||||.---...+ .++-+-| |+|+-.-+||.|.||+.
T Consensus 388 f~~K~~~~~~~~-r~lk~lCAEDe~t~~~WltAiRl~K 424 (622)
T KOG3751|consen 388 FCIKPNKLRNKR-RFLKMLCAEDEQTRTCWLTAIRLLK 424 (622)
T ss_pred EEeeeccccCcc-cceeeeecccchhHHHHHHHHHHHH
Confidence 788875554444 5665555 69999999999999974
No 104
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=86.86 E-value=1.8 Score=43.71 Aligned_cols=81 Identities=19% Similarity=0.218 Sum_probs=50.1
Q ss_pred eeEEEEeceeeeeecChhhhcC---CCCceeecCCCceeccc-----ccccC--ceeEEEEEecCCCCCcceEEeccCHH
Q psy3833 1000 RLWVTCRELQLRFYKSREDAQH---SSPINEFSLRGCEVTPD-----VNLSQ--GKFIIKLEVPAADGMSEMFLRCENEE 1069 (1087)
Q Consensus 1000 ~~w~~~~~~~l~~~k~~~~~~~---~~~~~~~~l~gcev~pd-----v~~~~--~k~~ikl~~p~~~~~~e~~l~~~~e~ 1069 (1087)
.|-|.|.|.-|.+=|-.++.+. --|...+.+.+||..+- -+.+. .-|.|.|+==..+-.-|+.|+|++|.
T Consensus 30 vylfLFnDlLl~tkkK~~~~f~V~dy~~r~~l~V~~~e~~~~~~~~~~~~~~~~~~F~ltLl~N~~gk~~el~L~a~S~s 109 (125)
T cd01221 30 IYLFLFNDLLLITKKKLGSTFVVFDYAPRSFLRVEKIEPDNQKIPLGSNLVGRPNLFLLTLLRNADDKQAELLLSADSQS 109 (125)
T ss_pred EEEEEecceEEEEEecCCCeEEEEeeccccceEEeecccccccccccccccCCCceEEEEeeccCCCCEEEEEEECCCHH
Confidence 7999999988887443344331 12334455555554332 22222 33544444333344678999999999
Q ss_pred HHHHHHHHhhh
Q psy3833 1070 QYASWMAACRL 1080 (1087)
Q Consensus 1070 qya~wmaacrl 1080 (1087)
.=+|||.|++.
T Consensus 110 dr~rWi~Al~~ 120 (125)
T cd01221 110 DRERWLSALAP 120 (125)
T ss_pred HHHHHHHhcCC
Confidence 99999999864
No 105
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=79.78 E-value=0.072 Score=54.89 Aligned_cols=74 Identities=23% Similarity=0.203 Sum_probs=55.0
Q ss_pred CHHHHHHHHhCCCCCchhhhcccccccccccccCceeeeec---------ceeeeeccCccccceeeeeeecccCCCCCC
Q psy3833 873 NEQQITWFQAELPTRIPAWLDSSLSIYEQGVKEFDTLRLRF---------KFYSIYDLNAKTDAVQVNLQSNVAQPTDTS 943 (1087)
Q Consensus 873 t~~E~e~~~aGGiLn~sr~l~ss~sl~~q~~~E~~~l~lrF---------kyy~f~d~n~K~d~vri~~q~~~~~~~~~~ 943 (1087)
.+...+|-+.| . ..-+-..+..-+.+.|||+++-||+ ||++||..|.+. ++.+++.|.++.+++
T Consensus 58 ~~~A~~yk~~g-~---~~iIVaG~nyG~GSSREhAa~a~~~lGv~aVIA~SFarI~~~Nlin---~Gilpl~f~~~~~~~ 130 (149)
T cd01578 58 PDTARDYKAHG-I---KWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKK---QGLLPLTFADPADYD 130 (149)
T ss_pred HHHHHHHHHcC-C---CeEEEccCccCCCCchHHHHHHHHHhCCCEEEEecHHHHHHHHHHh---cCCceEEecChHHHH
Confidence 35555555555 1 1133456788899999999999998 999999999999 888899998877777
Q ss_pred CCCCchhhHHH
Q psy3833 944 SISLADDDIDA 954 (1087)
Q Consensus 944 ~~~~~~Ddid~ 954 (1087)
+++ ..|+|+.
T Consensus 131 ~i~-~gd~i~i 140 (149)
T cd01578 131 KIH-PDDKVDI 140 (149)
T ss_pred hcC-CCCEEEE
Confidence 665 4555444
No 106
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=75.63 E-value=1.6 Score=39.38 Aligned_cols=29 Identities=38% Similarity=0.463 Sum_probs=24.0
Q ss_pred hhhhcccccccccccc--cCceeeeecceee
Q psy3833 889 PAWLDSSLSIYEQGVK--EFDTLRLRFKFYS 917 (1087)
Q Consensus 889 sr~l~ss~sl~~q~~~--E~~~l~lrFkyy~ 917 (1087)
..|||.++.|.+|..+ +.-.|.+|+|||.
T Consensus 50 ~~wL~~~k~l~~q~~~~~~~~~l~frvkfy~ 80 (80)
T PF09379_consen 50 HHWLDLDKKLKKQLKKNNPPFTLYFRVKFYP 80 (80)
T ss_dssp EEEE-SSSBGGGSTBTSSSSEEEEEEESS--
T ss_pred ceeccCcccHHHHcCCCCCCEEEEEEEEECC
Confidence 4799999999999998 8888999999984
No 107
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=71.29 E-value=4.3 Score=42.21 Aligned_cols=43 Identities=42% Similarity=0.622 Sum_probs=38.5
Q ss_pred hhhcccccccccccc-cCceeeeecceeeeeccCccccceeeee
Q psy3833 890 AWLDSSLSIYEQGVK-EFDTLRLRFKFYSIYDLNAKTDAVQVNL 932 (1087)
Q Consensus 890 r~l~ss~sl~~q~~~-E~~~l~lrFkyy~f~d~n~K~d~vri~~ 932 (1087)
.||+..++|++|..+ +.-.|.+|.+||...+.+++.|.+++++
T Consensus 58 ~~l~~~~~l~~~~~~~~~~~l~fr~r~~~~~~~~~~~d~~~~~~ 101 (207)
T smart00295 58 HWLDPAKTLLDQDVKSEPLTLYFRVKFYPPDPLQLKEDPTRLNL 101 (207)
T ss_pred eeCCCccCHHHhcCCCCCcEEEEEEEEccCCHHHhcchhHHHHH
Confidence 799999999999988 7889999999998887788889998864
No 108
>KOG4261|consensus
Probab=67.91 E-value=0.69 Score=57.65 Aligned_cols=43 Identities=44% Similarity=0.601 Sum_probs=35.4
Q ss_pred hhhcccccccccccccCceeeeecceeeeeccCccccceeeee
Q psy3833 890 AWLDSSLSIYEQGVKEFDTLRLRFKFYSIYDLNAKTDAVQVNL 932 (1087)
Q Consensus 890 r~l~ss~sl~~q~~~E~~~l~lrFkyy~f~d~n~K~d~vri~~ 932 (1087)
+|||.+|.|.||||-|+..|.||=||+-=-+=+--.|.||+|+
T Consensus 171 ~wld~~rtlreqgide~et~llRrk~f~sd~nvdsrdpvqlnl 213 (1003)
T KOG4261|consen 171 NWLDHSRTLREQGIDEEETLLLRRKFFFSDQNVDSRDPVQLNL 213 (1003)
T ss_pred hhHHHhHHHHhcCccHHHHHHHHHHHhhccccccccchHHhhh
Confidence 6999999999999999999999977653334445578899887
No 109
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=66.35 E-value=20 Score=45.42 Aligned_cols=104 Identities=10% Similarity=0.164 Sum_probs=82.6
Q ss_pred ccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccc---cCce-eEEEEEecC
Q psy3833 979 PELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNL---SQGK-FIIKLEVPA 1054 (1087)
Q Consensus 979 p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~---~~~k-~~ikl~~p~ 1054 (1087)
....+|+=.+.++|+.+--...=|||+++..++|||.+--.. ..||...-+-+|--+=|.=. -++- |.+++.=.
T Consensus 4 ~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~-~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn~- 81 (719)
T PLN00188 4 VVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK- 81 (719)
T ss_pred ceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc-cccceeeccCCCceEeecCceEEcCceEEEEEEecC-
Confidence 345688889999999999999889999999999999976665 78998888888877777532 2222 44444333
Q ss_pred CCCCcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1055 ADGMSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1055 ~~~~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
-+-.+.+-+-|-|-+.=++||-|.+.|+.+
T Consensus 82 ~~~~~~~~~~a~~~eea~~W~~a~~~a~~q 111 (719)
T PLN00188 82 KEKYHRITMAAFNIQEALIWKEKIESVIDQ 111 (719)
T ss_pred CCccccEEEecCCHHHHHHHHHHHHHHHhh
Confidence 456788999999999999999999999875
No 110
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=66.01 E-value=8.8 Score=37.96 Aligned_cols=86 Identities=14% Similarity=0.264 Sum_probs=62.1
Q ss_pred cccccchhcccceeEEEEecee-----eeeecChhhhcCCCCceeecCCCce-----eccc-----ccccCceeEEEEEe
Q psy3833 988 LKPKRFTMKAYKRLWVTCRELQ-----LRFYKSREDAQHSSPINEFSLRGCE-----VTPD-----VNLSQGKFIIKLEV 1052 (1087)
Q Consensus 988 ~~~~~~~lk~~k~~w~~~~~~~-----l~~~k~~~~~~~~~~~~~~~l~gce-----v~pd-----v~~~~~k~~ikl~~ 1052 (1087)
.++-+..-|.+|+=||++++.+ ++-|+-| +++|-+.+-|.|-+ -.|+ +...+++|-++.+-
T Consensus 9 ~k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~ek----ks~P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg~~ff~avk 84 (117)
T cd01234 9 YAIGKNVWKKWKKRFFVLVQVSQYTFAMCSYREK----KAEPTEFIQLDGYTVDYMPESDPDPNSELSLQGGRHFFNAVK 84 (117)
T ss_pred EeccchhhhhhheeEEEEEchhHHHHHHHhhhhh----cCCchhheeecceEEeccCCCCCCcccccccccchhhhheec
Confidence 4677778899999999999654 2334332 27888888898844 4553 45557777666543
Q ss_pred cCCCCCcceEEeccCHHHHHHHHHHhhhh
Q psy3833 1053 PAADGMSEMFLRCENEEQYASWMAACRLQ 1081 (1087)
Q Consensus 1053 p~~~~~~e~~l~~~~e~qya~wmaacrl~ 1081 (1087)
.-++|..-|++|+.=.-|..|.--|
T Consensus 85 ----egd~~~fa~~de~~r~lwvqa~yra 109 (117)
T cd01234 85 ----EGDELKFATDDENERHLWVQAMYRA 109 (117)
T ss_pred ----cCcEEEEeccchHHHHHHHHHHHHH
Confidence 3478999999999999998886544
No 111
>KOG0930|consensus
Probab=65.60 E-value=18 Score=41.15 Aligned_cols=99 Identities=18% Similarity=0.379 Sum_probs=65.3
Q ss_pred ccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCC---
Q psy3833 979 PELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAA--- 1055 (1087)
Q Consensus 979 p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~--- 1055 (1087)
|+-.+|| ||-.-=..|.+|+-||++-|--|.||.---| +||---|.|--..| -.|.-..+-||+.|+.|+.
T Consensus 260 pdREGWL--lKlgg~rvktWKrRWFiLtdNCLYYFe~tTD---KEPrGIIpLeNlsi-r~VedP~kP~cfEly~ps~~gq 333 (395)
T KOG0930|consen 260 PDREGWL--LKLGGNRVKTWKRRWFILTDNCLYYFEYTTD---KEPRGIIPLENLSI-REVEDPKKPNCFELYIPSNKGQ 333 (395)
T ss_pred cccccee--eeecCCcccchhheeEEeecceeeeeeeccC---CCCCcceeccccce-eeccCCCCCCeEEEecCCCCcC
Confidence 4444553 2222235788999999999999999954333 33432222222211 1344456779999999995
Q ss_pred --------------CCCcceEEecc-CHHHHHHHHHHhhhhhc
Q psy3833 1056 --------------DGMSEMFLRCE-NEEQYASWMAACRLQLT 1083 (1087)
Q Consensus 1056 --------------~~~~e~~l~~~-~e~qya~wmaacrl~~~ 1083 (1087)
+|.-+||--|- +.+.-.+||.+-+-++.
T Consensus 334 ~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 334 VIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred eeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence 66888997776 56667799999887765
No 112
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=65.03 E-value=17 Score=36.02 Aligned_cols=82 Identities=15% Similarity=0.260 Sum_probs=57.4
Q ss_pred cccceeEEEEeceeeeeecChhhhcC--CCCceeecCC-----Cceeccccc-ccCceeEEEEEecCCCCCcceEEeccC
Q psy3833 996 KAYKRLWVTCRELQLRFYKSREDAQH--SSPINEFSLR-----GCEVTPDVN-LSQGKFIIKLEVPAADGMSEMFLRCEN 1067 (1087)
Q Consensus 996 k~~k~~w~~~~~~~l~~~k~~~~~~~--~~~~~~~~l~-----gcev~pdv~-~~~~k~~ikl~~p~~~~~~e~~l~~~~ 1067 (1087)
+.||.-++.+++..|..|++.--+.. ..|...++|- .|...|..+ ..+..+|+-+....- -...|+|.|+
T Consensus 17 ~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irtg~~--vesh~fsVEt 94 (108)
T cd01258 17 QRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRTGTQ--VENHYLRVET 94 (108)
T ss_pred cccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEcCCc--eeeEEEEecC
Confidence 67788888899999999987654221 3466666665 555555333 235566666655433 5889999999
Q ss_pred HHHHHHHHHHhh
Q psy3833 1068 EEQYASWMAACR 1079 (1087)
Q Consensus 1068 e~qya~wmaacr 1079 (1087)
...-+.|..|..
T Consensus 95 ~~dL~~W~raiv 106 (108)
T cd01258 95 HRDLASWERALV 106 (108)
T ss_pred HHHHHHHHHHHh
Confidence 999999998853
No 113
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=64.87 E-value=10 Score=45.32 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=56.5
Q ss_pred cceeEEEEeceeeeee--cChhhhc-CCCCceeecCCCceecccccccCceeEEEEEecCCCCCcceEEeccCHHHHHHH
Q psy3833 998 YKRLWVTCRELQLRFY--KSREDAQ-HSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASW 1074 (1087)
Q Consensus 998 ~k~~w~~~~~~~l~~~--k~~~~~~-~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~qya~w 1074 (1087)
+|+-||..++..++.. .+++... ..+++....+.+|.-+|-+++-..++++.+ ....| .=+|+.|++|..+.+|
T Consensus 392 wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~~~~~~~~~~~~i--~~~~~-~~~~~~~~~~~~~~~W 468 (478)
T PTZ00267 392 WKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPEVYSQKHPNQLVL--WFNNG-QKIIAYAKTAEDRDQW 468 (478)
T ss_pred hhhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccHHhcCCCCceEEE--EecCC-cEEEEecCChHHHHHH
Confidence 5666777776655554 2333322 234444556788887777888888888877 33333 3799999999999999
Q ss_pred HHHhhhhh
Q psy3833 1075 MAACRLQL 1082 (1087)
Q Consensus 1075 maacrl~~ 1082 (1087)
|-+.+=|+
T Consensus 469 ~~~~~~~~ 476 (478)
T PTZ00267 469 ISKFQRAC 476 (478)
T ss_pred HHHHHHHh
Confidence 99987654
No 114
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=63.17 E-value=8.3 Score=37.95 Aligned_cols=58 Identities=28% Similarity=0.515 Sum_probs=35.3
Q ss_pred ceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCccc
Q psy3833 490 DIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGP 564 (1087)
Q Consensus 490 ~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~ 564 (1087)
+||.+.| |++. ....++++.+.++|++ .+|+.|++ .++-+.+...++|.++.+|+|..
T Consensus 55 ~iDlavv--~~~~-----~~~~~~v~~~~~~g~~---~v~~~~g~-------~~~~~~~~a~~~gi~vigp~C~g 112 (116)
T PF13380_consen 55 PIDLAVV--CVPP-----DKVPEIVDEAAALGVK---AVWLQPGA-------ESEELIEAAREAGIRVIGPNCLG 112 (116)
T ss_dssp T-SEEEE---S-H-----HHHHHHHHHHHHHT-S---EEEE-TTS---------HHHHHHHHHTT-EEEESS-HH
T ss_pred CCCEEEE--EcCH-----HHHHHHHHHHHHcCCC---EEEEEcch-------HHHHHHHHHHHcCCEEEeCCcce
Confidence 5787777 5555 4566677766555643 59999993 33445777888999999999853
No 115
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=63.00 E-value=37 Score=33.62 Aligned_cols=79 Identities=14% Similarity=0.371 Sum_probs=53.5
Q ss_pred ccceeEEEEec-eee---eeecChh--hhcC-CCCceeecCCCceecccccccCceeEEEEEecCCCCCcceEEeccCHH
Q psy3833 997 AYKRLWVTCRE-LQL---RFYKSRE--DAQH-SSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEE 1069 (1087)
Q Consensus 997 ~~k~~w~~~~~-~~l---~~~k~~~--~~~~-~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~ 1069 (1087)
.+-+|||.++. ..+ ..+..+- +... -.--+.|.|.-|.+-|--++ .++||.-+..|.-.+ =+-|-.++|.
T Consensus 16 ~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~~r~~~~~-dRRFCFei~~~~~~~--~~~lQA~Se~ 92 (104)
T cd01249 16 SWTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCSRRKTESI-DKRFCFDVEVEEKPG--VITMQALSEK 92 (104)
T ss_pred eEEEEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeeccccccCCc-cceeeEeeeecCCCC--eEEEEecCHH
Confidence 45588888665 333 2333321 1110 11234789999999887665 456999998887543 3899999999
Q ss_pred HHHHHHHHh
Q psy3833 1070 QYASWMAAC 1078 (1087)
Q Consensus 1070 qya~wmaac 1078 (1087)
+...||+|-
T Consensus 93 ~~~~Wi~A~ 101 (104)
T cd01249 93 DRRLWIEAM 101 (104)
T ss_pred HHHHHHHhh
Confidence 999999984
No 116
>KOG0521|consensus
Probab=61.77 E-value=6.7 Score=50.39 Aligned_cols=89 Identities=24% Similarity=0.433 Sum_probs=71.3
Q ss_pred ecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCCCCcceEEecc
Q psy3833 987 CLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCE 1066 (1087)
Q Consensus 987 ~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~ 1066 (1087)
.|++.-.--|.+++.||-.++-.+.|++-..+..+ .-..+|+=|.|.|+=+....+||++++- +..=..|-.|
T Consensus 280 l~~k~~~~~~tw~r~~f~~q~~~l~~~~r~~~~~~---~~~~dL~~csvk~~~~~~drr~CF~iiS----~tks~~lQAe 352 (785)
T KOG0521|consen 280 LRKKASNASKTWKRRWFSIQDGQLGYQHRGADAEN---VLIEDLRTCSVKPDAEQRDRRFCFEIIS----PTKSYLLQAE 352 (785)
T ss_pred hhhhcccchhhHHhhhhhhhccccccccccccccc---cccccchhccccCCcccccceeeEEEec----CCcceEEecC
Confidence 34455555788999999999999999876555442 5678999999999999999999999877 3345678899
Q ss_pred CHHHHHHHHHHhhhhh
Q psy3833 1067 NEEQYASWMAACRLQL 1082 (1087)
Q Consensus 1067 ~e~qya~wmaacrl~~ 1082 (1087)
+|+-+-.||.+-.=.+
T Consensus 353 s~~d~~~Wi~~i~nsi 368 (785)
T KOG0521|consen 353 SEKDCQDWISALQNSI 368 (785)
T ss_pred chhHHHHHHHHHHHHH
Confidence 9999999999865433
No 117
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=61.56 E-value=35 Score=33.97 Aligned_cols=83 Identities=17% Similarity=0.207 Sum_probs=55.3
Q ss_pred ceeEEEEeceeeeeecChhh-hcCC------CCceeecCCCceecccccccCceeEEEEEecCCCCCcceEEeccCHHHH
Q psy3833 999 KRLWVTCRELQLRFYKSRED-AQHS------SPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQY 1071 (1087)
Q Consensus 999 k~~w~~~~~~~l~~~k~~~~-~~~~------~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~qy 1071 (1087)
.||.|.|.|.-|.|=+.... ...| .==++|+|++++|.-.-+-..-|..++|.-.. + +=+-|.|.|+++=
T Consensus 22 ~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~~~knaF~I~~~~--~-~s~~l~Akt~eeK 98 (112)
T cd01261 22 ERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSSEYKNAFEIILKD--G-NSVIFSAKNAEEK 98 (112)
T ss_pred eEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCcccCceEEEEcCC--C-CEEEEEECCHHHH
Confidence 69999999999888754321 0000 01136889999998433333335666665322 2 2478889999999
Q ss_pred HHHHHHhhhhhcc
Q psy3833 1072 ASWMAACRLQLTE 1084 (1087)
Q Consensus 1072 a~wmaacrl~~~~ 1084 (1087)
.+||+++-.+++.
T Consensus 99 ~~Wm~~l~~~~~~ 111 (112)
T cd01261 99 NNWMAALISVQTK 111 (112)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988763
No 118
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=56.74 E-value=59 Score=31.57 Aligned_cols=92 Identities=14% Similarity=0.119 Sum_probs=58.9
Q ss_pred ccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCCCCcc
Q psy3833 981 LYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSE 1060 (1087)
Q Consensus 981 l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e 1060 (1087)
|+|.|+..+.++ -||=|.|...-|.+=+- ++.+. -=..|.+.+-.|+-.++=..-+|-| .+.....+-
T Consensus 6 leg~l~~~~~~~------eR~vFLFe~~ll~~K~~-~~~y~--~K~~i~~~~l~i~e~~~~d~~~F~v---~~~~~p~~~ 73 (97)
T cd01222 6 LEGRFREHGGGK------PRLLFLFQTMLLIAKPR-GDKYQ--FKAYIPCKNLMLVEHLPGEPLCFRV---IPFDDPKGA 73 (97)
T ss_pred eeceEEeecCCC------ceEEEEecccEEEEEec-CCeeE--EEEEEEecceEEecCCCCCCcEEEE---EecCCCceE
Confidence 456666665432 38888998887776543 32221 1114556666666666544455654 444344467
Q ss_pred eEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1061 MFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1061 ~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
+-|.|-|+++...||.+.+.++-|
T Consensus 74 ~~l~A~s~e~K~~W~~~i~~~i~~ 97 (97)
T cd01222 74 LQLTARNREEKRIWTQQLKRAMLQ 97 (97)
T ss_pred EEEEecCHHHHHHHHHHHHHHhhC
Confidence 789999999999999999988743
No 119
>PF15411 PH_10: Pleckstrin homology domain
Probab=54.86 E-value=62 Score=32.38 Aligned_cols=35 Identities=26% Similarity=0.516 Sum_probs=30.8
Q ss_pred CceeEEEEEecCCCCCcceEEeccCHHHHHHHHHH
Q psy3833 1043 QGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAA 1077 (1087)
Q Consensus 1043 ~~k~~ikl~~p~~~~~~e~~l~~~~e~qya~wmaa 1077 (1087)
.+.|.+.|..-...++.-..|||.||+|-..|.++
T Consensus 81 ~g~~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~ 115 (116)
T PF15411_consen 81 PGSYSLQISWKGDPELENFTLRFRNEEQLEQWRSA 115 (116)
T ss_pred CCceEEEEEEcCCCCCceEEEEeCCHHHHHHHHhh
Confidence 67799999886666799999999999999999876
No 120
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=53.55 E-value=60 Score=32.39 Aligned_cols=78 Identities=17% Similarity=0.124 Sum_probs=51.1
Q ss_pred ceeEEEEeceeeeeecCh--hhhcCCCCceeecCCCceecccccccCc------eeEEEEEecCCCCCcceEEeccCHHH
Q psy3833 999 KRLWVTCRELQLRFYKSR--EDAQHSSPINEFSLRGCEVTPDVNLSQG------KFIIKLEVPAADGMSEMFLRCENEEQ 1070 (1087)
Q Consensus 999 k~~w~~~~~~~l~~~k~~--~~~~~~~~~~~~~l~gcev~pdv~~~~~------k~~ikl~~p~~~~~~e~~l~~~~e~q 1070 (1087)
-|+.|.|...-|.|=|+. .+.+. ==.+|+|..|+|++.=+=... |...||.-. ++.+=+-+.|-|+++
T Consensus 20 ~R~~FLFD~~LI~CKkd~~r~~~~~--yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~--~~~~~~~f~~Kt~e~ 95 (109)
T cd01224 20 SRVLFLFDHQMVLCKKDLIRRDHLY--YKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSE--STDEWYLFSFKSAER 95 (109)
T ss_pred cEEEEEecceEEEEecccccCCcEE--EEEEEEcccEEEEECCCCccccCCceeEEEEEEEEc--CCCeEEEEEECCHHH
Confidence 489999999888887642 11110 112789999999876433222 455555433 334445677889999
Q ss_pred HHHHHHHhhh
Q psy3833 1071 YASWMAACRL 1080 (1087)
Q Consensus 1071 ya~wmaacrl 1080 (1087)
=.+||+|+-+
T Consensus 96 K~~Wm~a~~~ 105 (109)
T cd01224 96 KHRWLSAFAL 105 (109)
T ss_pred HHHHHHHHHH
Confidence 9999999854
No 121
>PLN02866 phospholipase D
Probab=48.57 E-value=39 Score=44.73 Aligned_cols=79 Identities=19% Similarity=0.370 Sum_probs=54.3
Q ss_pred ccceeEEEEeceeeeeecChhhhcCCCCce--eecC-C--CceecccccccCc-------eeEEEEEecCCCCCcceEEe
Q psy3833 997 AYKRLWVTCRELQLRFYKSREDAQHSSPIN--EFSL-R--GCEVTPDVNLSQG-------KFIIKLEVPAADGMSEMFLR 1064 (1087)
Q Consensus 997 ~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~--~~~l-~--gcev~pdv~~~~~-------k~~ikl~~p~~~~~~e~~l~ 1064 (1087)
.+.+-||++|+.-|.|.+...+.. +.. .++. . ++.=..++.++.+ +|.|++ ..|...+.|+
T Consensus 217 ~w~k~w~v~k~~~l~~~~~p~~~~---~~~v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i----~~~~r~l~l~ 289 (1068)
T PLN02866 217 NWQKVWAVLKPGFLALLEDPFDAK---PLDIIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKV----TCGNRSIRLR 289 (1068)
T ss_pred chheeEEEEeccEEEEEecCCCCc---eeEEEEEecccccccCCCcceeecccccccCCCcceEEE----ecCceEEEEE
Confidence 455789999999999997777655 333 2221 1 1211334444333 555554 4567779999
Q ss_pred ccCHHHHHHHHHHhhhhh
Q psy3833 1065 CENEEQYASWMAACRLQL 1082 (1087)
Q Consensus 1065 ~~~e~qya~wmaacrl~~ 1082 (1087)
|.++.+...|+++-+-+.
T Consensus 290 ~~s~~~~~~w~~ai~~~~ 307 (1068)
T PLN02866 290 TKSSAKVKDWVAAINDAG 307 (1068)
T ss_pred ECCHHHHHHHHHHHHHHH
Confidence 999999999999999886
No 122
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=41.97 E-value=1.2e+02 Score=30.62 Aligned_cols=83 Identities=10% Similarity=0.176 Sum_probs=54.1
Q ss_pred ceeEEEEeceeeeeecChhhhcCCCCc----eeecCCCceec--c--cccccCceeEEEEEecCCCCCcceEEeccCHHH
Q psy3833 999 KRLWVTCRELQLRFYKSREDAQHSSPI----NEFSLRGCEVT--P--DVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQ 1070 (1087)
Q Consensus 999 k~~w~~~~~~~l~~~k~~~~~~~~~~~----~~~~l~gcev~--p--dv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~q 1070 (1087)
-||=|+|...-|.|=++.+. . +.|- +.+.|.-+.|+ | |......+|.=-+++..-+|-+-+-+.|-||+.
T Consensus 22 ~RyiFLFDk~lI~CK~~~~~-~-~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~~~~~~~~f~~Ktee~ 99 (116)
T cd01223 22 LRYIFLFDKAVIVCKALGDN-T-GDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHKQGKTGFTFYFKTEHL 99 (116)
T ss_pred eeEEEEecceEEEEEecCCC-C-CCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEecCCCccEEEEeCCHHH
Confidence 69999999999999766442 1 1111 12344443343 2 332223345444445556777889999999999
Q ss_pred HHHHHHHhhhhhc
Q psy3833 1071 YASWMAACRLQLT 1083 (1087)
Q Consensus 1071 ya~wmaacrl~~~ 1083 (1087)
=.+||+|.-+|+.
T Consensus 100 K~kWm~al~~a~s 112 (116)
T cd01223 100 RKKWLKALEMAMS 112 (116)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999874
No 123
>KOG0690|consensus
Probab=37.98 E-value=77 Score=37.39 Aligned_cols=88 Identities=20% Similarity=0.382 Sum_probs=60.5
Q ss_pred ccceecccccchhcccceeEEEEeceeeeeecChhh--hcCCCCceeecCCCceecccccccCceeEEEEEecCCCCCcc
Q psy3833 983 DYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSRED--AQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSE 1060 (1087)
Q Consensus 983 ~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~--~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e 1060 (1087)
.|+|-.|| ||++.+.|-++-=||+|-. ...-+|+..|..++|...--=--...-|+|++|-=.+ --|
T Consensus 26 E~IknWRp---------RYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~cq~m~~erPrPntFiiRcLQWTT--VIE 94 (516)
T KOG0690|consen 26 EHIKNWRP---------RYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMVRDCQTMKTERPRPNTFIIRCLQWTT--VIE 94 (516)
T ss_pred hhhhcccc---------eEEEEeeCCceEeeccCCccCCCCcccccchhhhhhhhhhccCCCCceEEEEeeeeee--eee
Confidence 46666665 5777788888888888754 3335899999999998753333344568898875443 123
Q ss_pred eEEeccCHHHHHHHHHHhhhh
Q psy3833 1061 MFLRCENEEQYASWMAACRLQ 1081 (1087)
Q Consensus 1061 ~~l~~~~e~qya~wmaacrl~ 1081 (1087)
--...|+++.-.+|+.|-+.-
T Consensus 95 RTF~ves~~eRq~W~~AIq~v 115 (516)
T KOG0690|consen 95 RTFYVESAEERQEWIEAIQAV 115 (516)
T ss_pred eeeecCCHHHHHHHHHHHHHH
Confidence 334567888888999987643
No 124
>COG1833 Uri superfamily endonuclease [Replication, recombination, and repair]
Probab=31.46 E-value=39 Score=34.74 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=25.7
Q ss_pred CEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCccccccC
Q psy3833 527 PFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQ 568 (1087)
Q Consensus 527 ~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~ 568 (1087)
..++.| ...|..+-..|.+-+-.|.+.||+-|---
T Consensus 70 ~a~~~~-------~~~Ecela~~ls~~~~~I~gFG~SDc~ck 104 (132)
T COG1833 70 GAIIFP-------ERLECELARALSKNFEGIEGFGCSDCKCK 104 (132)
T ss_pred EEEEec-------CchHHHHHHHHHhcCCccCCCCCCCCCCc
Confidence 466776 23345567778888999999999998654
No 125
>KOG2059|consensus
Probab=29.92 E-value=1.3e+02 Score=38.60 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=75.6
Q ss_pred hhhHHHHHhhcccccCCcccccCCCCCCCCccccccceecc--cc-cchhcccceeEEEEeceeeeeecChhhhcCCCCc
Q psy3833 949 DDDIDAALTDLQVTLEGSHISLASPDIMHVPELYDYLRCLK--PK-RFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPI 1025 (1087)
Q Consensus 949 ~Ddid~aL~~Lev~~eg~~~~~~~~~~~~~p~l~~~lk~~~--~~-~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~ 1025 (1087)
..++++.+..|+..=+.+.-+. + .....|-|..+|=+=| +| |++-+.||+-||-+-.++|||-|++. ..|+
T Consensus 536 e~~~~~~~~fld~is~~~~~~~-~-~p~~p~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~----~q~~ 609 (800)
T KOG2059|consen 536 EQHFIAVKVFLDEISSVGDRSS-L-SPQEPVVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPG----KQPI 609 (800)
T ss_pred hHhHHHHHhhhhcccccccccc-c-CCCCCceecccceEeccccccchhhhhhhheEEEeccceeEEecCCc----cCcc
Confidence 4567777777773322222111 1 1334455666665544 33 56669999999999999999999987 3455
Q ss_pred eeecC---CCceecccccccCceeEEEEEecCCCCCcceEEeccCHHHHHHHHHHhh
Q psy3833 1026 NEFSL---RGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAACR 1079 (1087)
Q Consensus 1026 ~~~~l---~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~qya~wmaacr 1079 (1087)
..|.| +-.|=.-+=++. .|=++++.=+. .-+|+-|.|-..=..|.-|.|
T Consensus 610 ~~Ipl~nI~avEklee~sF~-~knv~qVV~~d----rtly~Q~~n~vEandWldaL~ 661 (800)
T KOG2059|consen 610 YTIPLSNIRAVEKLEEKSFK-MKNVFQVVHTD----RTLYVQAKNCVEANDWLDALR 661 (800)
T ss_pred cceeHHHHHHHHHhhhhccC-CCceEEEEecC----cceeEecCCchHHHHHHHHHH
Confidence 44433 333322222232 33456665544 389999999888899998865
No 126
>KOG3531|consensus
Probab=29.17 E-value=30 Score=44.48 Aligned_cols=95 Identities=28% Similarity=0.529 Sum_probs=66.3
Q ss_pred CCCCccccccc-eecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccc--cccCceeEEEEE
Q psy3833 975 IMHVPELYDYL-RCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDV--NLSQGKFIIKLE 1051 (1087)
Q Consensus 975 ~~~~p~l~~~l-k~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv--~~~~~k~~ikl~ 1051 (1087)
|.-+-.|.||| |=||-.. ++.+.|+||-.-.|.+|||..|.+ |+..+.|=|-.|.|-- +=-.+-|-.||.
T Consensus 920 ~a~e~qLsg~Llrkfknss----gwqkLwvvft~fcl~fyKS~qD~~---~laslPlLgysvs~P~~~d~i~K~~vfkl~ 992 (1036)
T KOG3531|consen 920 IAVENQLSGYLLRKFKNSS----GWQKLWVVFTNFCLFFYKSHQDSE---PLASLPLLGYSVSIPAEPDPIQKDYVFKLK 992 (1036)
T ss_pred hHHHhhhhHHHHHHhhccc----cceeeeeeecceeeEeeccccccc---ccccccccccccCCCCCCCCcchhheeeee
Confidence 34445788775 5555444 788999999999999999988877 8888888886665421 111233666665
Q ss_pred ecCCCCCcceEEeccCHHHHHHHHHHhhh
Q psy3833 1052 VPAADGMSEMFLRCENEEQYASWMAACRL 1080 (1087)
Q Consensus 1052 ~p~~~~~~e~~l~~~~e~qya~wmaacrl 1080 (1087)
+..- --+.|-|.+.-|.|||.-.|=
T Consensus 993 fk~h----vyffraes~yt~~rw~evi~~ 1017 (1036)
T KOG3531|consen 993 FKSH----VYFFRAESYYTFERWMEVITD 1017 (1036)
T ss_pred hhhh----HHHHhhhhhhhhhhHHHHhhc
Confidence 5431 125678889999999986653
No 127
>PRK11413 putative hydratase; Provisional
Probab=27.64 E-value=9 Score=48.95 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=38.6
Q ss_pred hhcccccccccccccCceeeeec---------ceeee-eccCccccceeeeeeecccCC
Q psy3833 891 WLDSSLSIYEQGVKEFDTLRLRF---------KFYSI-YDLNAKTDAVQVNLQSNVAQP 939 (1087)
Q Consensus 891 ~l~ss~sl~~q~~~E~~~l~lrF---------kyy~f-~d~n~K~d~vri~~q~~~~~~ 939 (1087)
|+-.....-|.+.|||+++.||+ ||+|+ |..|.+. ++.+++.|.++
T Consensus 630 ~iv~~~nyG~GSSREhAAla~r~LGi~AVIAkSFARIf~RsNlIN---~GilpL~f~~~ 685 (751)
T PRK11413 630 SMVYAVKPGDGSAREQAASCQRVLGGLANIAEEYATKRYRSNVIN---WGMLPFQMAEE 685 (751)
T ss_pred EEEEEeCCCCCccHHHHHHHHHHhCceEEEEeeehHHHHhhhhhh---cCccceecCch
Confidence 44444555688899999999999 99995 9999999 99999999765
No 128
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=26.45 E-value=2.7e+02 Score=27.44 Aligned_cols=79 Identities=11% Similarity=0.117 Sum_probs=49.2
Q ss_pred eeEEEEeceeeeeecChhhhcCCCCc-eeecCCCceecccccccCceeEEEEEecCCCCCcceEEeccCHHHHHHHHHHh
Q psy3833 1000 RLWVTCRELQLRFYKSREDAQHSSPI-NEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAAC 1078 (1087)
Q Consensus 1000 ~~w~~~~~~~l~~~k~~~~~~~~~~~-~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~qya~wmaac 1078 (1087)
||.|.|.|.=|.. +..-..+.=.. ..++|.+|.|..=-+-..-+..+++.-|. .=..+.|+|++.=.+||.+.
T Consensus 21 R~ffLFnD~LvY~--~~~~~~~~~~~~~~i~L~~~~v~~~~d~~~~~n~f~I~~~~----kSf~v~A~s~~eK~eWl~~i 94 (104)
T cd01218 21 RQFFLFNDILVYG--NIVISKKKYNKQHILPLEGVQVESIEDDGIERNGWIIKTPT----KSFAVYAATETEKREWMLHI 94 (104)
T ss_pred EEEEEecCEEEEE--EeecCCceeeEeeEEEccceEEEecCCcccccceEEEecCC----eEEEEEcCCHHHHHHHHHHH
Confidence 7899999955543 32100000011 36899999886322222335666665542 35778899999999999988
Q ss_pred hhhhcc
Q psy3833 1079 RLQLTE 1084 (1087)
Q Consensus 1079 rl~~~~ 1084 (1087)
--|+..
T Consensus 95 ~~ai~~ 100 (104)
T cd01218 95 NKCVTD 100 (104)
T ss_pred HHHHHH
Confidence 766643
No 129
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=25.98 E-value=37 Score=31.16 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=16.6
Q ss_pred hhcccccccccccccCceeeee
Q psy3833 891 WLDSSLSIYEQGVKEFDTLRLR 912 (1087)
Q Consensus 891 ~l~ss~sl~~q~~~E~~~l~lr 912 (1087)
=|+-++||-|+||+.||.|.||
T Consensus 58 ~L~~~~tL~~~gV~dGd~L~L~ 79 (79)
T PF08817_consen 58 PLDPDQTLADAGVRDGDVLVLR 79 (79)
T ss_dssp EEETTSBCGGGT--TT-EEEE-
T ss_pred ccCCcCcHhHcCCCCCCEEEeC
Confidence 4788999999999999999997
No 130
>PF11184 DUF2969: Protein of unknown function (DUF2969); InterPro: IPR021351 This family of proteins with unknown function appears to be restricted to Lactobacillales.
Probab=23.90 E-value=25 Score=32.42 Aligned_cols=33 Identities=27% Similarity=0.253 Sum_probs=28.3
Q ss_pred cceeEEEEeceeeeeecChhhhcCCCCceeecCC
Q psy3833 998 YKRLWVTCRELQLRFYKSREDAQHSSPINEFSLR 1031 (1087)
Q Consensus 998 ~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~ 1031 (1087)
=++|.++..+...++|||.|++. ..-|+.|||.
T Consensus 39 d~~fav~~~~~~~~~~Ks~deAv-e~iI~~ynLh 71 (71)
T PF11184_consen 39 DGRFAVVKNDNVEFFVKSLDEAV-EAIIREYNLH 71 (71)
T ss_pred CCcEEEEeCCCceEEEcCHHHHH-HHHHHHhcCC
Confidence 35888999999999999999998 6778888873
No 131
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=20.05 E-value=6.2e+02 Score=25.38 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=64.5
Q ss_pred ccccceeccccc-chhcccceeEEEEeceeeeeecChhhhcCCCCce----eecCCCceecccccccCceeEEEEEecCC
Q psy3833 981 LYDYLRCLKPKR-FTMKAYKRLWVTCRELQLRFYKSREDAQHSSPIN----EFSLRGCEVTPDVNLSQGKFIIKLEVPAA 1055 (1087)
Q Consensus 981 l~~~lk~~~~~~-~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~----~~~l~gcev~pdv~~~~~k~~ikl~~p~~ 1055 (1087)
|+|.+-+.-+++ +..|+-.|.-|.|.+.-|-+=.-++....+.|.. .|.|...-++..|.=..-||-|+.-= +
T Consensus 7 ~Q~~f~v~~~~~~~~~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~--~ 84 (114)
T cd01232 7 LQDTFQVWDPKAGLIQKGRERRVFLFEQSIIFAKEVKKKKQFGNPKYIYKSKLQVSKMGLTEHVEGDPCRFALWSGD--P 84 (114)
T ss_pred EEccEEEEeCCccccCCCceeEEEEeeceEEEEEEeccCCCCCceeEEEecceeeeeeEeEEccCCCCceEEEEeCC--C
Confidence 567777777765 4567778999999987665533222111123322 45566666777776667788776543 3
Q ss_pred CCCcceE-EeccCHHHHHHHHHHhhhhh
Q psy3833 1056 DGMSEMF-LRCENEEQYASWMAACRLQL 1082 (1087)
Q Consensus 1056 ~~~~e~~-l~~~~e~qya~wmaacrl~~ 1082 (1087)
....+.| |..-|++....|++.-|=.+
T Consensus 85 ~~~~~~~ilqA~s~e~K~~W~~~I~~il 112 (114)
T cd01232 85 PISDNRIILKANSQETKQEWVKKIREIL 112 (114)
T ss_pred CCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence 2233555 78889999999999876443
Done!