Query psy3833
Match_columns 1087
No_of_seqs 500 out of 2565
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 18:32:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c96_A Mitochondrial aconitase 100.0 2E-182 7E-187 1623.4 62.8 707 112-890 32-748 (753)
2 2b3y_A Iron-responsive element 100.0 1E-161 4E-166 1456.8 38.1 692 113-890 50-883 (888)
3 1l5j_A Aconitate hydratase 2; 100.0 1E-108 4E-113 990.4 37.7 479 28-624 274-824 (865)
4 4f7h_A Fermitin family homolog 100.0 2.1E-58 7.1E-63 462.7 10.2 146 938-1084 6-151 (173)
5 4bbk_A Kindlin-1, fermitin fam 100.0 4.7E-51 1.6E-55 405.8 9.5 117 967-1084 14-130 (165)
6 2ys3_A UNC-112-related protein 100.0 3E-40 1E-44 324.3 10.0 110 974-1084 4-113 (137)
7 1v7l_A 3-isopropylmalate dehyd 100.0 2.7E-36 9.2E-41 305.6 5.6 149 699-890 7-155 (163)
8 2pkp_A Homoaconitase small sub 100.0 1.1E-35 3.8E-40 303.0 6.6 153 696-890 5-157 (170)
9 3vba_A Isopropylmalate/citrama 100.0 2.9E-33 1E-37 285.9 6.0 156 695-890 6-161 (176)
10 2hcu_A 3-isopropylmalate dehyd 100.0 2.6E-29 8.9E-34 263.5 6.0 162 693-883 23-187 (213)
11 3h5j_A 3-isopropylmalate dehyd 99.9 2.6E-29 8.8E-34 255.1 3.8 152 693-883 9-169 (171)
12 3q3w_A 3-isopropylmalate dehyd 99.9 4.9E-29 1.7E-33 259.3 3.9 162 694-883 10-177 (203)
13 1l5j_A Aconitate hydratase 2; 99.9 2.9E-24 1E-28 259.9 6.2 252 603-889 67-348 (865)
14 1v88_A Oxysterol binding prote 99.3 2.7E-12 9.3E-17 125.2 10.7 101 978-1086 7-127 (130)
15 1wgq_A FYVE, rhogef and PH dom 99.0 5.6E-10 1.9E-14 103.3 9.3 100 978-1086 7-106 (109)
16 2coc_A FYVE, rhogef and PH dom 98.9 1.2E-09 4E-14 104.4 7.9 94 980-1084 9-107 (112)
17 2cof_A Protein KIAA1914; PH do 98.9 1.9E-09 6.6E-14 99.8 9.0 96 978-1084 7-102 (107)
18 2y7b_A Actin-binding protein a 98.9 1.7E-09 5.8E-14 103.2 8.0 106 978-1084 4-129 (134)
19 1wjm_A Beta-spectrin III; PH d 98.9 5.7E-09 1.9E-13 98.8 9.5 104 980-1086 9-120 (123)
20 1upq_A PEPP1; PH domain, phosp 98.8 7.4E-09 2.5E-13 97.2 9.6 98 979-1084 11-110 (123)
21 1v89_A Hypothetical protein KI 98.8 1.5E-08 5.1E-13 93.8 10.8 102 978-1085 7-114 (118)
22 2dkp_A Pleckstrin homology dom 98.8 1.4E-08 4.7E-13 96.0 10.8 99 978-1084 20-120 (128)
23 1fgy_A GRP1; PH domain, signal 98.8 1.1E-08 3.9E-13 96.1 10.0 102 978-1086 4-123 (127)
24 1wg7_A Dedicator of cytokinesi 98.8 1.6E-08 5.5E-13 98.7 11.1 102 977-1084 16-125 (150)
25 2yry_A Pleckstrin homology dom 98.8 2.1E-08 7.2E-13 93.9 11.0 96 980-1083 23-120 (122)
26 1btn_A Beta-spectrin; signal t 98.8 1.1E-08 3.9E-13 93.2 8.6 87 992-1081 17-106 (106)
27 1fao_A Dual adaptor of phospho 98.8 1.1E-08 3.7E-13 96.8 8.6 110 965-1084 4-113 (126)
28 3tca_A Amyloid beta A4 precurs 98.8 7.9E-08 2.7E-12 103.1 16.3 103 977-1082 166-275 (291)
29 2d9x_A Oxysterol binding prote 98.8 1.6E-08 5.4E-13 95.5 8.8 97 978-1084 7-105 (120)
30 2dhk_A TBC1 domain family memb 98.8 1.8E-08 6.3E-13 95.2 9.2 98 977-1084 6-105 (119)
31 1pls_A Pleckstrin homology dom 98.8 2.8E-08 9.6E-13 92.2 10.2 99 978-1085 4-103 (113)
32 3rcp_A Pleckstrin homology dom 98.7 1.9E-08 6.4E-13 91.9 8.6 85 994-1085 11-95 (103)
33 2d9y_A Pleckstrin homology dom 98.7 4.2E-08 1.5E-12 91.0 11.1 99 979-1085 11-111 (117)
34 2p0d_A RHO GTPase-activating p 98.7 3.3E-08 1.1E-12 95.5 10.1 103 978-1084 11-125 (129)
35 2i5f_A Pleckstrin; PH domain, 98.7 3.4E-08 1.2E-12 90.5 9.5 97 978-1083 6-109 (109)
36 2dtc_A RAL guanine nucleotide 98.7 4.4E-08 1.5E-12 95.7 10.6 103 980-1085 2-114 (126)
37 1u5d_A SKAP55, SRC kinase-asso 98.7 4.5E-08 1.5E-12 89.1 8.9 99 980-1084 4-106 (108)
38 1x05_A Pleckstrin; PH domain, 98.7 7.8E-08 2.7E-12 91.2 10.8 102 974-1084 13-121 (129)
39 2rsg_A Collagen type IV alpha- 98.7 2.5E-08 8.6E-13 89.9 7.0 82 994-1083 13-94 (94)
40 3cxb_B Pleckstrin homology dom 98.6 6.6E-08 2.3E-12 91.1 8.8 97 982-1084 3-102 (112)
41 1u5f_A SRC-associated adaptor 98.6 9.5E-08 3.2E-12 93.4 9.4 102 978-1085 16-121 (148)
42 1dro_A Beta-spectrin; cytoskel 98.6 4.6E-08 1.6E-12 92.9 6.9 104 978-1084 7-120 (122)
43 1v5u_A SBF1, SET binding facto 98.6 1.1E-07 3.7E-12 88.3 9.0 100 977-1086 6-114 (117)
44 4a6h_A Phosphatidylinositol 4, 98.6 1.2E-07 4.2E-12 91.4 9.7 100 979-1083 6-118 (120)
45 2cod_A Centaurin-delta 1; ARF 98.6 1.1E-07 3.6E-12 88.7 8.3 94 978-1084 7-100 (115)
46 1x1g_A Pleckstrin 2; PH domain 98.6 1.6E-07 5.5E-12 88.9 9.3 103 975-1085 14-126 (129)
47 3pp2_A RHO GTPase-activating p 98.6 1.2E-07 4.2E-12 90.9 8.5 92 990-1084 23-124 (124)
48 2dn6_A KIAA0640 protein; PH do 98.6 1.6E-07 5.4E-12 86.9 8.9 97 978-1084 7-104 (115)
49 2da0_A 130-kDa phosphatidylino 98.6 1.9E-07 6.5E-12 87.5 9.5 95 977-1084 8-102 (114)
50 1u5e_A SRC-associated adaptor 98.5 2E-07 6.9E-12 97.7 9.7 100 979-1084 106-209 (211)
51 1eaz_A Tandem PH domain contai 98.5 1.5E-07 5E-12 88.3 7.6 99 977-1085 12-113 (125)
52 3a8p_A T-lymphoma invasion and 98.5 3.2E-07 1.1E-11 99.4 9.8 108 973-1083 5-124 (263)
53 2j59_M RHO-GTPase activating p 98.4 2.8E-07 9.6E-12 91.8 7.9 99 980-1083 4-111 (168)
54 2kc2_A Talin-1, F1; FERM, adhe 98.4 1.4E-07 4.7E-12 92.5 5.3 28 890-917 98-125 (128)
55 2w2x_D 1-phosphatidylinositol- 98.4 3.9E-07 1.3E-11 87.3 7.4 105 978-1086 11-122 (124)
56 1wi1_A Calcium-dependent activ 98.4 5.4E-07 1.8E-11 88.2 8.4 94 981-1083 10-110 (126)
57 2r09_A Cytohesin-3; autoinhibi 98.4 4.8E-07 1.7E-11 101.4 9.2 100 979-1085 213-330 (347)
58 1x1f_A Signal-transducing adap 98.4 1.3E-06 4.3E-11 87.4 10.8 98 976-1083 14-113 (149)
59 3tfm_A Myosin X; split PH doma 98.4 4.3E-07 1.5E-11 95.9 7.8 96 979-1083 58-155 (228)
60 2lul_A Tyrosine-protein kinase 98.4 6.1E-07 2.1E-11 90.3 8.5 101 980-1086 16-124 (164)
61 3aj4_A Pleckstrin homology dom 98.3 1E-06 3.5E-11 81.5 6.9 96 979-1083 5-111 (112)
62 1dyn_A Dynamin; signal transdu 98.3 2.6E-06 9E-11 83.1 9.6 94 983-1082 16-117 (125)
63 1v5p_A Pleckstrin homology dom 98.2 5.4E-06 1.9E-10 80.2 11.0 111 970-1086 6-123 (126)
64 1unq_A RAC-alpha serine/threon 98.2 1.7E-06 5.9E-11 81.6 7.0 102 978-1084 7-111 (125)
65 1qqg_A IRS-1, insulin receptor 98.2 2.8E-06 9.6E-11 92.1 8.4 98 976-1085 7-114 (264)
66 1btk_A Bruton'S tyrosine kinas 98.2 2.2E-06 7.6E-11 86.8 7.1 101 982-1086 6-135 (169)
67 3lju_X ARF-GAP with dual PH do 98.1 7.3E-06 2.5E-10 93.3 10.1 100 976-1084 266-373 (386)
68 2d9v_A Pleckstrin homology dom 98.0 7.6E-06 2.6E-10 78.6 7.9 95 980-1083 9-114 (130)
69 4bbk_A Kindlin-1, fermitin fam 98.0 8.9E-07 3E-11 89.1 1.2 35 88-123 105-139 (165)
70 2q13_A DCC-interacting protein 98.0 1E-05 3.4E-10 91.3 8.9 99 978-1083 277-375 (385)
71 4f7h_A Fermitin family homolog 98.0 1.3E-06 4.3E-11 88.8 1.1 35 88-123 126-160 (173)
72 4h8s_A DCC-interacting protein 97.9 2.2E-05 7.4E-10 89.3 9.6 99 979-1084 301-399 (407)
73 2rov_A RHO-associated protein 97.9 3E-05 1E-09 74.4 9.0 101 981-1083 3-115 (117)
74 2rlo_A Centaurin-gamma 1; spli 97.9 3.6E-05 1.2E-09 73.5 9.1 102 978-1083 3-124 (128)
75 4gmv_A RAS-associated and plec 97.8 0.00029 9.9E-09 77.3 15.5 209 851-1083 31-266 (281)
76 3a8n_A TIAM-1, T-lymphoma inva 97.7 3.1E-05 1.1E-09 84.8 6.2 103 978-1083 10-124 (279)
77 3hk0_A Growth factor receptor- 97.6 0.00014 4.9E-09 78.8 8.8 103 977-1083 130-240 (256)
78 3lju_X ARF-GAP with dual PH do 97.2 0.00022 7.5E-09 81.2 4.8 85 995-1082 159-245 (386)
79 2ys3_A UNC-112-related protein 97.1 0.00012 4E-09 72.6 1.2 35 88-123 88-122 (137)
80 2fjl_A 1-phosphatidylinositol- 96.7 0.0051 1.7E-07 61.9 9.5 88 994-1082 13-147 (150)
81 4ejn_A RAC-alpha serine/threon 96.5 0.0031 1.1E-07 71.4 6.8 96 983-1083 10-108 (446)
82 1v61_A RAC/CDC42 guanine nucle 90.9 0.51 1.7E-05 46.4 7.6 82 998-1084 45-127 (132)
83 3qwm_A Iqsec1, IQ motif and SE 89.4 1.3 4.5E-05 44.1 9.1 102 981-1085 13-124 (140)
84 2d9w_A Docking protein 2; PH d 86.7 2.7 9.1E-05 41.3 9.2 105 975-1085 8-124 (127)
85 1nty_A Triple functional domai 85.5 1.7 5.8E-05 47.2 8.1 102 982-1085 206-310 (311)
86 1zc3_B Exocyst complex protein 84.4 3 0.0001 39.5 8.3 80 999-1084 27-108 (113)
87 3ml4_A Protein DOK-7; tyrosine 65.5 25 0.00087 37.5 9.7 101 975-1084 5-114 (224)
88 2d59_A Hypothetical protein PH 64.2 5.1 0.00017 39.1 4.0 60 490-566 77-136 (144)
89 3mpx_A FYVE, rhogef and PH dom 52.5 21 0.00071 40.3 7.0 79 1000-1085 261-339 (434)
90 1iuk_A Hypothetical protein TT 49.5 7.6 0.00026 37.8 2.4 58 490-564 70-127 (140)
91 3ivf_A Talin-1; FERM domain, c 49.0 21 0.00072 39.8 6.2 93 832-932 73-185 (371)
92 2duw_A Putative COA-binding pr 47.0 10 0.00035 37.1 2.8 58 490-564 70-127 (145)
93 2rgn_B RHOA/RAC/CDC42 exchange 46.7 33 0.0011 37.9 7.3 87 996-1084 227-319 (354)
94 1dbh_A Protein (human SOS 1); 44.4 43 0.0015 36.7 7.7 84 998-1084 260-350 (354)
95 1y81_A Conserved hypothetical 43.8 21 0.00072 34.6 4.5 60 490-566 69-128 (138)
96 3zvr_A Dynamin-1; hydrolase, D 41.4 55 0.0019 40.7 8.6 78 997-1078 557-640 (772)
97 2dfk_A Collybistin II; DH doma 40.5 45 0.0015 37.5 7.3 83 997-1083 273-363 (402)
98 1kz7_A Guanine nucleotide exch 36.4 55 0.0019 36.1 7.0 84 997-1084 237-326 (353)
99 3tfm_A Myosin X; split PH doma 35.6 20 0.00069 37.4 3.2 50 958-1020 10-59 (228)
100 2pz1_A RHO guanine nucleotide 33.5 84 0.0029 35.8 8.1 83 997-1083 350-440 (466)
101 3ff4_A Uncharacterized protein 31.5 26 0.00089 33.6 2.9 54 491-562 59-112 (122)
102 2vrw_B P95VAV, VAV1, proto-onc 27.5 1.5E+02 0.0051 33.1 8.7 81 999-1084 252-336 (406)
103 2z0q_A XPLN, RHO guanine nucle 27.1 78 0.0027 34.5 6.2 83 997-1082 243-345 (346)
104 3ky9_A Proto-oncogene VAV; cal 20.7 1.1E+02 0.0039 36.1 6.3 81 999-1084 424-508 (587)
105 3t06_A PDZ-rhogef, RHO guanine 20.4 2.4E+02 0.0081 31.5 8.6 83 999-1084 312-409 (418)
106 2adz_A Alpha-1-syntrophin; pro 20.2 68 0.0023 33.1 3.6 51 1027-1078 122-172 (178)
No 1
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=100.00 E-value=2e-182 Score=1623.36 Aligned_cols=707 Identities=72% Similarity=1.195 Sum_probs=675.5
Q ss_pred CCCCchhhhccc----------cccCCCceeccccccccccchhhHHHHHHHHcCCCcccCCceeeecccccccCCCchh
Q psy3833 112 SKGRTLADSSYE----------AEQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGVED 181 (1087)
Q Consensus 112 ~kGkTLAdKg~E----------~VrpGe~V~l~~d~v~~qD~Tg~~a~~~~~~~g~~~v~~p~~~~~DH~v~a~~~~~~d 181 (1087)
.+|+||+||.++ .+++|+++.++||||++||+|+|||+.+|+++|.+++++|..+++||++|++.++..|
T Consensus 32 ~~~~Tl~eKIl~~H~~~~~~~~~~~~g~~i~~~~drvl~hD~T~~~a~~~l~~~G~~~v~~P~~~~~DH~v~~~~~~~~d 111 (753)
T 1c96_A 32 NRPLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISSGLPKVAVPSTIHCDHLIEAQLGGEKD 111 (753)
T ss_dssp CSCCCHHHHHHHTTBSCTTTCCCCTTTCEEEECCSEEEEETTTHHHHHHHHHHHTCSSCSSCEEEECCSSCCBSSCHHHH
T ss_pred CCCCCHHHHHHHHHhCCcccccccCCCCEEEEEccEEEEeccccHHHHHHHHHhCCCCCCCCCceecCCCCCCCCCcccc
Confidence 678999999762 2367889999999999999999999999999999999999999999999998776668
Q ss_pred HHHHhhhhHHHHHHHHHHHHhcCceecCCCCcceeeecccccccCCCeEecCCCCccCccccceeeccccHHHHHHHHhc
Q psy3833 182 LKRAKSQNEEVYAFLRSAGAKYGVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMAD 261 (1087)
Q Consensus 182 ~~~~~~~n~e~~~fl~~~~~~~Gi~~~~pG~GIiHqv~lE~~~~Pg~~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~ 261 (1087)
++.++.+|+++|+||+|++++|||.|++||+||||||++|+|++||+++|||||||||+||||+||||||++|++++|+|
T Consensus 112 ~~~~~~~n~e~~~~l~~~a~~~gi~~~~pg~GI~Hqv~~E~~~~Pg~~ivGtDSHT~t~GalG~la~GvG~~e~~~vmag 191 (753)
T 1c96_A 112 LRRAKDINQEVYNFLATAGAKYGVGFWRPGSGIIHQIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAG 191 (753)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHTCEEECTTSBCHHHHHHHHTCCTTCEEEESSTTGGGGGGGTCEEEECCHHHHHHHHHT
T ss_pred hhhhhhhHHHHHHHHHHHHHHCCCEEECCCCCeeCeEecccccCCCcEEecCCCCCCccchhhhheeccCHHHHHHHHhC
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEeecCcEEEEEEECcCCCCcchhHHHHHHHHHhcccCcccEEEEEeCCcccccCccccccccccccccccccccccc
Q psy3833 262 IPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPY 341 (1087)
Q Consensus 262 g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~ 341 (1087)
++|+|++||+|+|+|+|+|++|||+|||||+|+++|+++|++|++|||+||||++||+++|||||||
T Consensus 192 q~~~~~~P~vv~V~l~G~L~~gVtakDviL~ii~~l~~~G~~g~~vEf~G~gv~~LS~~~R~TI~NM------------- 258 (753)
T 1c96_A 192 IPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNM------------- 258 (753)
T ss_dssp CCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHTTTTTTTEEEEEESGGGGGSCHHHHHHHHHH-------------
T ss_pred CeeeccCCcEEEEEEeeecCCCccHHHHHHHHHHHhccCCcceEEEEEECCccccCCcchhhhhhcc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhcccCCCccccccCCCccccccccccccccccccccccccccccccCCCCcccccccccCceeecccCcHHHHHHH
Q psy3833 342 NKRINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFL 421 (1087)
Q Consensus 342 ~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d~~t~~yL 421 (1087)
++|+||++|+||+|++|++||
T Consensus 259 -----------------------------------------------------------a~E~GA~~gifp~De~T~~YL 279 (753)
T 1c96_A 259 -----------------------------------------------------------GAEIGATTSVFPYNHRMKKYL 279 (753)
T ss_dssp -----------------------------------------------------------GGGGTCSEEECCCCHHHHHHH
T ss_pred -----------------------------------------------------------chhhCcccccccCcHHHHHHH
Confidence 889999999999999999999
Q ss_pred HhcCChHHHHHHHHhhccCCCCCCCcccEEEEEeCCCCccccccCCCCCccccccccchhhhhCCCccceeEEEEeccCC
Q psy3833 422 KATLREDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTN 501 (1087)
Q Consensus 422 ~~~~r~~~~~~~~~~~~~l~aD~dA~Y~~vieiDLs~ieP~vA~P~~Pd~v~~lse~~~~~~~~g~~~~Id~vfIGSCTn 501 (1087)
+.|+|.+.++.+++|++.|.+|++|.|+++|+||||+|||+||||++|||++||+|+.+..++++++.+||+||||||||
T Consensus 280 ~~~gr~~~~~~~~~y~~~l~~D~~A~Yd~~ieiDls~leP~va~P~~P~~~~~v~e~~~~~~~~~~~~~Vd~~~IGSCTN 359 (753)
T 1c96_A 280 SKTGRADIANLADEFKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTN 359 (753)
T ss_dssp HHTTCHHHHHHHHHTGGGSSCCTTCCCSEEEEEEGGGCCCEEECSSSTTCEEEHHHHHHHHHHHTCCCBEEEEEEBTTTB
T ss_pred HhcCCcHHHHHHHHHHhhccCCCCCceeEEEEEEccccceeecCCCCCcceeEhHHhhhhHhhcCCccceEEEEEecCCC
Confidence 99999988999999988899999999999999999999999999999999999999998877788888999999999999
Q ss_pred CChHHHHHHHHHHHHhHhCCCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCccccccCCCcccccCCccee
Q psy3833 502 ASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNT 581 (1087)
Q Consensus 502 ~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~v~~g~~~~ 581 (1087)
+|++||++||+|||+|+++|++++||++|+|||++|+++|+++|++++|.+|||+|.+||||+|+||+++..+.+++.++
T Consensus 360 ~~~~Dl~~AA~ilkga~~~~v~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~~~~~~~~~ 439 (753)
T 1c96_A 360 SSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNT 439 (753)
T ss_dssp CSHHHHHHHHHHHHHHHTTTCCCSSEEEECCSBHHHHHHHHHTTHHHHHHHTTEEECCSSCGGGGTCBCCCSSCTTCCEE
T ss_pred CCHHHHHHHHHHhccHhhcCCCCCceEEEeCCCHHHHHHHHHcCcHHHHHHcCcEEecCCceeeecCCCCcccccCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999864445677778
Q ss_pred EEeecCCCCCCCCCCCCCcceeecCHHHHHHHHHhCccccCCCCCCCCCCCCCCeeecCCCCCCCCCCCcCCCCccccCC
Q psy3833 582 IVNSYNRNFTGRNDANPATHAFVTSPELVTALAIKGTLAFDPRSDTLTGSDGKPFKLRDPFGDELPTKGFDPGVDTYQPP 661 (1087)
Q Consensus 582 ~vsT~NRNF~gR~G~~p~~~~yLaSp~lvAAsAiaG~I~fdp~~d~L~~~dG~~v~l~dP~~~eip~~~~~~~~~~~~~~ 661 (1087)
+|||+||||+||||++|++++|||||+||||+||+|+|+|||++++|.++||++|+|+||+.+|+|++.|..++..|+.|
T Consensus 440 ~vsT~NRNF~GR~gG~p~~~~yLaSP~~vaA~AiaG~i~~d~~~d~l~~~~g~~v~l~~p~~~e~~~~~f~~~~~~~~~~ 519 (753)
T 1c96_A 440 IVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKDGKKFKLEAPDADELPRAEFDPGQDTYQHP 519 (753)
T ss_dssp EEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBTTCCTTTCCCCCSSCCCCCCCCCCCCSSCSSCCCCCSCCEECC
T ss_pred EEecccCCcccccCCCCCCceeecCHHHHHHHHHcCCcccCcccccccCCCCCeeeecCCccchhhhhhccCCccccccC
Confidence 99999999999997678899999999999999999999999999999889999999999999999998899899999988
Q ss_pred CCCCCCceEecCCCCccccCCCCCCCCcccccccceeeeeecCccccccccCCCCcccccCccccccccccccccccccC
Q psy3833 662 PKDGSSLSVDVDPKSQRLQLLEPFDVWDKKDIKDMVVLIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLFLTATNAENG 741 (1087)
Q Consensus 662 ~~~~~~v~~~~~p~S~~l~~l~pf~~~~~~~i~~arvLl~~gd~iTTDhIsPAG~~L~~rg~~~~i~~~~l~~~~n~~~g 741 (1087)
+.+.+++.+.|+|+|+|++.+|||++|+..++.++++|++++|+||||||||||+||++||+++|+++|+|.+..+.+++
T Consensus 520 ~~~~~~~~~~~~p~s~~~~~~~~f~~~~~~~~~~~~vL~klgd~iTTDhIsPAG~~L~~rg~f~ni~~n~l~~~~~~~~g 599 (753)
T 1c96_A 520 PKDSSGQRVAVSPTSQRLQLLEPFDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENR 599 (753)
T ss_dssp CSCCTTCCCCCCTTCSSBCCCCCCCCCCSSCEEEEEEEEEBCSCCBHHHHBCCGGGGGGTBCHHHHGGGBTTTSBBTTTC
T ss_pred CCCCCcceEeeCCCCccccCCCCCCCCCccccccceEEEeccCCcccccccccchhhccccchhhhhhhhccccccccCC
Confidence 76666789999999999999999999999999999999999999999999999999999999999999999887777788
Q ss_pred cccceEeecCCCcCChHHHHHHHHHcCCCcEEecCCCcCCCccchhhccccccccceEEEEechhHHHhhhhccCccceE
Q psy3833 742 EMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPL 821 (1087)
Q Consensus 742 ~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG~nyG~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL 821 (1087)
+.+.++++++|+++.+|||+++|+++|.++|||||+|||||||||||||+++++||+||||+||+|||++||+|||||||
T Consensus 600 ~~~~~~~~~~~~~~~~~d~a~~y~~~g~~~iivag~n~G~GSSRe~Aa~~~~~~Gi~avIa~sfarI~~~N~i~~Gllpl 679 (753)
T 1c96_A 600 KANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPL 679 (753)
T ss_dssp CBSCEECTTTCCEECHHHHHHHHHHHTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEESCBCHHHHHHHHHTTCEEE
T ss_pred CcceeEEecCCcccccHHHHHHHHHhCCCeEEEecCcCCCCcchHHHHhhHHHcCeeEEEehhHHHHHHhhhhhcCCcce
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCEEEEccccCcCCCCcEEEEEEecCCeEEEEEEEecCCHHHHHHHHhCCCCCchh
Q psy3833 822 TFANPSDYDKIQPNDRISLVGLKDLAPGKPVTAQIKHADGKVEEIKLNHSMNEQQITWFQAELPTRIPA 890 (1087)
Q Consensus 822 ~f~~~~~~~~l~~gD~i~I~~l~~l~pg~~v~v~v~~~dG~~~~~~l~~~lt~~E~e~~~aGGiLn~sr 890 (1087)
+|+++++|++|++||+|+|+++.++.+|+.+++.+++.+|+.++|++++++|+.|++||++||+|||.+
T Consensus 680 ~~~~~~~~~~l~~gd~i~I~gl~~l~~g~~v~~~i~~~~g~~~~~~~~~~~t~~e~~~~~aGGlLnyvk 748 (753)
T 1c96_A 680 TFADPADYNKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRMK 748 (753)
T ss_dssp EESSGGGGGGCCTTCEEEEECGGGCCTTCCEEEEEECTTSCEEEEEEECCCCHHHHHHHHHTSHHHHHH
T ss_pred eecCcchhhhcCCCCEEEEcChHHcCCCceEEEEEEecCCcEEEEEEeCCCCHHHHHHHHcCCHHHHHH
Confidence 999888999999999999999988999999998888889999999999999999999999999999865
No 2
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=100.00 E-value=1.2e-161 Score=1456.79 Aligned_cols=692 Identities=30% Similarity=0.466 Sum_probs=598.9
Q ss_pred CCCchhhh------cc-ccccCCCceeccccccccccchhhHHHHHHHHc-------CCCc----ccCCceeeecccccc
Q psy3833 113 KGRTLADS------SY-EAEQTGPHSRLRPDRVAMQDATAQMAMLQFISS-------GLPR----VAVPSTIHCDHLIEA 174 (1087)
Q Consensus 113 kGkTLAdK------g~-E~VrpGe~V~l~~d~v~~qD~Tg~~a~~~~~~~-------g~~~----v~~p~~~~~DH~v~a 174 (1087)
.|+++.++ +| +..++|++|.++||||++||+|||||+++|+++ |.+. ...|..+|+||++++
T Consensus 50 ~~~~~~~~~v~~~~~~~~~~~~~~~i~~~pdrvl~qD~Tg~~a~~~l~~mr~a~~~~g~d~~ki~p~~pv~lv~DH~v~~ 129 (888)
T 2b3y_A 50 DEFLVKKQDIENILHWNVTQHKNIEVPFKPARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQV 129 (888)
T ss_dssp CSSSSCHHHHHHHHTHHHHTTTTCEEEECCSEEEEEHHHHHHHHHHHHHHHHHHHHTTCCGGGSSCSSCEEEECCSSCCC
T ss_pred CCcchhHHHHHHHhcccccCCCCCEEEEeccEEEEEccccHHHHHHHHHHHHHHHhcCCChhhcCCCCCeeEEeCCCCCc
Confidence 46666665 23 235789999999999999999999999998764 6652 345678999999999
Q ss_pred cCCCchh-----HHHHhhhhHHHHHHHHHHHHhc-CceecCCCCcceeeecccc----------cccCCCeEecCCCCcc
Q psy3833 175 QVGGVED-----LKRAKSQNEEVYAFLRSAGAKY-GVGFWHPGSGIIHQIILEN----------YAFPGLLMIGTDSHTP 238 (1087)
Q Consensus 175 ~~~~~~d-----~~~~~~~n~e~~~fl~~~~~~~-Gi~~~~pG~GIiHqv~lE~----------~~~Pg~~~vGtDSHT~ 238 (1087)
+..+..| +.+++.+|.++|+||+|.+++| |+.|++||+||||||++|+ +++|| ++||||||||
T Consensus 130 ~~~~~~da~~~n~~~e~~rN~e~~~fL~w~~~~f~~~~~~~pG~GI~Hqv~lE~la~~v~~~~G~~~P~-tlVGtDSHT~ 208 (888)
T 2b3y_A 130 DFNRRADSLQKNQDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPD-SLVGTDSHTT 208 (888)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECTTSCCHHHHHHHTTCCSEEEETTEEEEC-EEEESSGGGG
T ss_pred CCccccCHHHHHHHHHHHHhcchHHHHHHHHHhccCCCCCCCCCCCcceehhhhccccccccCcccccC-eEEecCCCcc
Confidence 8876554 5677889999999999999999 9999999999999999995 67887 6899999999
Q ss_pred CccccceeeccccHHHHHHHHhcCceEeecCcEEEEEEECcCCCCcchhHHHHHHHHHhcccCcccEEEEEeCCcccccC
Q psy3833 239 NGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNIS 318 (1087)
Q Consensus 239 ~~GglGala~GvG~~d~a~~ma~g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i~g~L~~~G~~g~ivEf~G~gv~~LS 318 (1087)
|+||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||+|||||+|+++|+++|++|++|||+||||++||
T Consensus 209 t~GglG~la~GVGg~eae~~mag~~~~~~~PevvgV~ltG~L~~gVtakDviL~i~~~l~~~G~vGk~vEF~G~gv~~LS 288 (888)
T 2b3y_A 209 MIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLS 288 (888)
T ss_dssp GGGGGTCEEEECCHHHHHHHHTTCCEEEECCCEEEEEEESCCCTTCCHHHHHHHHHHHHHHHCCTTCEEEEESGGGTTSC
T ss_pred ccCcceeEEEccCHHHHHHHHhcCcEeecCCCEEEEEEEccCCCCcchhHHHHHHHHHhccCCccceEEEEecCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccccccccccchhhcccCCCccccccCCCccccccccccccccccccccccccccccccCCCCccc
Q psy3833 319 CTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTIC 398 (1087)
Q Consensus 319 v~~R~Ti~NMs~E~~A~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 398 (1087)
+++|||||||
T Consensus 289 ~~~R~TI~NM---------------------------------------------------------------------- 298 (888)
T 2b3y_A 289 IADRATIANM---------------------------------------------------------------------- 298 (888)
T ss_dssp HHHHHHHHHT----------------------------------------------------------------------
T ss_pred ccchhhhhhc----------------------------------------------------------------------
Confidence 9999999999
Q ss_pred ccccccCceeecccCcHHHHHHHHhcCChH-HHHHHHHhhc---cCC---CC-CCCcccEEEEEeCCCCccccccCCCCC
Q psy3833 399 NMGAEIGATTSVFPYNNRMYDFLKATLRED-IAKEAMKYQS---LLT---PD-EGAKYDQLIELDLNTLEPHVNGPFTPD 470 (1087)
Q Consensus 399 ~m~~E~GAt~~if~~d~~t~~yL~~~~r~~-~~~~~~~~~~---~l~---aD-~dA~Y~~vieiDLs~ieP~vA~P~~Pd 470 (1087)
++|+|||+|+||+|++|.+||+.|+|.+ ..+..++|.+ +|. +| ++|+|+++||||||+|||+||||++||
T Consensus 299 --a~E~GAt~g~fp~De~T~~YL~~~gr~~~~~~~~e~y~~a~~l~~~l~~d~~dA~Yd~~ieiDLs~leP~VAgP~~P~ 376 (888)
T 2b3y_A 299 --CPEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVELDLKTVVPCCSGPKRPQ 376 (888)
T ss_dssp --HHHHTCSEEECCCCHHHHHHHHHTTCCHHHHHHHHHHHHHHTCCCCTTCGGGCCCCSEEEEEEGGGCCSEEECSSCTT
T ss_pred --chhhCCeeEEecCcHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhccCCCCCCCceEEEEEEEhhheeEeecCCCCcc
Confidence 8999999999999999999999999965 3445555532 454 46 999999999999999999999999999
Q ss_pred ccccccccchhhh----h----CCC------------------cc-----ceeEEEEeccCCCChHHHHHHHHHH-HHhH
Q psy3833 471 LAHPINKLGEAAK----K----NGW------------------PM-----DIKVSLIGSCTNASYEDMSRCASIA-KEAM 518 (1087)
Q Consensus 471 ~v~~lse~~~~~~----~----~g~------------------~~-----~Id~vfIGSCTn~~~~dl~aAA~il-k~a~ 518 (1087)
|++||+++...++ + +|+ +. +|++||||||||+|++|+++||.|| |+|+
T Consensus 377 ~~~plse~~~~~~~~l~~~~g~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~ 456 (888)
T 2b3y_A 377 DKVAVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAV 456 (888)
T ss_dssp CEEEGGGHHHHHHHHHHSCSBTTBCCCCGGGTTCEEEEEETTEEEEEETTBEEEEEECCHHHHTCHHHHHHHHHHHHHHH
T ss_pred cccChHHhhhhHHHhhhcccccccccccchhhcccceeecCCccccccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHH
Confidence 9999999975432 1 111 11 5889999999999999966666555 6777
Q ss_pred hCCCCC--CCCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCccccccCCCcccccC-------Ccc-eeEEeecCC
Q psy3833 519 AHGLKS--STPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKM-------GEK-NTIVNSYNR 588 (1087)
Q Consensus 519 ~~~~~~--~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~v~~-------g~~-~~~vsT~NR 588 (1087)
++|+++ .||++|+|||++|+++|+++|++++|.++||+|.+||||+|+||+++ .+++ |+. .++|||+||
T Consensus 457 ~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GC~~CiG~~~~-l~~~~~~~i~~ge~~~~~vsS~NR 535 (888)
T 2b3y_A 457 DAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGP-LPEPVVEAITQGDLVAVGVLSGNR 535 (888)
T ss_dssp HTTCCCCTTSEEEECCSSHHHHHHHHHTSCHHHHHHTTCCBCCSSCGGGGTCCCC-CCHHHHHHHHHHTCCCEEEESSSC
T ss_pred hcCCCCCCCceEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEeCCCCcceeCCCCC-CCchhhhhhccCCeeEEEEeccCC
Confidence 666554 48999999999999999999999999999999999999999999875 2222 443 367999999
Q ss_pred CCCCCCCCCCCcceeecCHHHHHHHHHhCccccCCCCCCCC-CCCCCCeeecC--CCCCCCCC--------CCcC-----
Q psy3833 589 NFTGRNDANPATHAFVTSPELVTALAIKGTLAFDPRSDTLT-GSDGKPFKLRD--PFGDELPT--------KGFD----- 652 (1087)
Q Consensus 589 NF~gR~G~~p~~~~yLaSp~lvAAsAiaG~I~fdp~~d~L~-~~dG~~v~l~d--P~~~eip~--------~~~~----- 652 (1087)
||+||||++ .+.+|||||+||||+||+|+|+||+++|++. +.||++++|+| |+.+|+++ ..|.
T Consensus 536 NFeGR~g~~-~~~~yLaSP~lvaA~AiaG~i~~d~~~dpl~~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~ 614 (888)
T 2b3y_A 536 NFEGRVHPN-TRANYLASPPLVIAYAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQK 614 (888)
T ss_dssp CCTTSSCTT-CSEEEECCHHHHHHHHHHCBSCCCTTTSCSEEETTTEEECHHHHCCCHHHHHHHHHHHCCHHHHHHHHTT
T ss_pred CcCcCCCCC-ccccEecCHHHHHHHHhcCeeecccccCccccCCCCCcccccccCCchhhhHHHHHhcCCHHHhhhhhcc
Confidence 999999854 3678999999999999999999999999995 78999999999 88877763 1111
Q ss_pred --CCCccccCCCCCCCCceEecCCCCccccCCCCCCC-----CcccccccceeeeeecCccccccccCCC---------C
Q psy3833 653 --PGVDTYQPPPKDGSSLSVDVDPKSQRLQLLEPFDV-----WDKKDIKDMVVLIKVKGKCTTDHISAAG---------P 716 (1087)
Q Consensus 653 --~~~~~~~~~~~~~~~v~~~~~p~S~~l~~l~pf~~-----~~~~~i~~arvLl~~gd~iTTDhIsPAG---------~ 716 (1087)
.+++.|+.++.. .+..|.|+|+|+||+.||+|++ |+..++.++++|++++|+|||||||||| +
T Consensus 615 ~~~~~~~~~~~~~~-~~~~~~w~~~St~i~~~p~f~~~~~~~~~~~~~~~~~~l~~~gdnitTDhIsPAg~i~~~s~ag~ 693 (888)
T 2b3y_A 615 IETVNESWNALATP-SDKLFFWNSKSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAAR 693 (888)
T ss_dssp TTTCCHHHHHCCCC-CCSSCCCCTTCSSCCCCGGGTTCCSSCCCCCCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHH
T ss_pred ccCCccccccCCCC-CCCccccCCCcccccCCCCccccccCCCCcccccCcEEEEEecCCccccccccCccccCCCHHHH
Confidence 245667766543 3578999999999999999974 6677999999999999999999999997 6
Q ss_pred cccc----------------------cCcccccc-ccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEE
Q psy3833 717 WLKF----------------------RGHLDNIS-NNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVA 773 (1087)
Q Consensus 717 ~L~~----------------------rg~~~~i~-~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IV 773 (1087)
||++ ||+|.|++ .|.|.+ .+++.+++.++|+.+++++++++|+++|+++||
T Consensus 694 ~L~~~gv~~~~f~syg~rRgn~~vm~rg~F~n~r~~n~l~~------~~g~~t~~~p~g~~~~~~d~a~~y~~~g~~~ii 767 (888)
T 2b3y_A 694 YLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLLNRFLN------KQAPQTIHLPSGEILDVFDAAERYQQAGLPLIV 767 (888)
T ss_dssp HHHHTTCCGGGCCCTGGGTTCHHHHHHTTTCCTTCEETTTT------EECSEEEETTTTEEEEHHHHHHHHHHTTCCEEE
T ss_pred HHHhcCCChHHhccccccccCHHHHhhhccccccccccccc------ccCCceeecCCCccccchhhHHHHHhcCCceEE
Confidence 8876 55666665 555554 145678889999999999999999999999999
Q ss_pred ecCCCcCCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecCCCCcc--cCCCCCEEEEccccC-cCCCC
Q psy3833 774 VGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYD--KIQPNDRISLVGLKD-LAPGK 850 (1087)
Q Consensus 774 VAG~nyG~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~--~l~~gD~i~I~~l~~-l~pg~ 850 (1087)
|||+|||||||||||||+++++||+||||+||+|||++||+|||||||+|+++.+|+ .+.++|+|+|+ +.+ +.||+
T Consensus 768 vaG~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~Nli~~Gllpl~~~~~~~~~~~~~~~~~~i~i~-l~~~~~~g~ 846 (888)
T 2b3y_A 768 LAGKEYGAGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTII-IPENLKPQM 846 (888)
T ss_dssp ECCSSBTBSCCCTHHHHHHHHTTEEEEEESCBCHHHHHHHHHHTCEEEEECTTCCHHHHTCCSCSCEEEC-CCSSCCTTC
T ss_pred ECCCCCCCCccHHHHHHHHHHcCeeEEEEhhHHHHHHhhhhhcCCceEeecccccHHHhccCCCceEEEE-cccccCCCc
Confidence 999999999999999999999999999999999999999999999999999998888 67899999998 766 88998
Q ss_pred cEEEEEEecCCeEEEEEEEecCCHHHHHHHHhCCCCCchh
Q psy3833 851 PVTAQIKHADGKVEEIKLNHSMNEQQITWFQAELPTRIPA 890 (1087)
Q Consensus 851 ~v~v~v~~~dG~~~~~~l~~~lt~~E~e~~~aGGiLn~sr 890 (1087)
.+++++ .+|+++++.+++ +|+.|++||++||+|||.+
T Consensus 847 ~v~v~~--~~G~~~~~~~~~-~t~~e~~~~~aGGiL~yv~ 883 (888)
T 2b3y_A 847 KVQVKL--DTGKTFQAVMRF-DTDVELTYFLNGGILNYMI 883 (888)
T ss_dssp EEEEEE--TTSCEEEEEECC-CSHHHHHHHHHTSHHHHHH
T ss_pred EEEEEe--CCCeEEEEEecC-CCHHHHHHHHcCCHHHHHH
Confidence 888766 678766666653 6999999999999999753
No 3
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=100.00 E-value=1.2e-108 Score=990.43 Aligned_cols=479 Identities=24% Similarity=0.332 Sum_probs=409.3
Q ss_pred cCCeecceeccC-----------Ccccccc----------------ccCceeEEeecCCCCCcHHHhh----hccccccc
Q psy3833 28 MNGSYSPVSWNG-----------NVSTLEM----------------LNGSLDSSLACSPSSPCKEARA----KLVKPKSL 76 (1087)
Q Consensus 28 ~~~~~~~~~~~~-----------~~~~~e~----------------~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~l 76 (1087)
.++|++|||||. +|..|++ .+|+++.+|++.|..+.+++|| +++++|+|
T Consensus 274 IA~SFA~IF~~N~~n~Gllpi~~~v~~l~~Gd~i~Idl~~g~I~~~~~g~~~~~f~~~p~~~~~~v~AGGli~~i~~r~l 353 (865)
T 1l5j_A 274 LGGKIAPIFFNTMEDAGALPIEVDVSNLNMGDVIDVYPYKGEVRNHETGELLATFELKTDVLIDEVRAGGRIPLIIGRGL 353 (865)
T ss_dssp EEEEECHHHHHHHHHTTCEEEECCCTTCCTTCEEEEETTTTEEEETTTCCEEEECCCSCTHHHHHHHHTSHHHHHHHHHH
T ss_pred EechHHHHHHHHHHHcCCceEEecHhhcCCCCEEEEECCCCEEEEcCCCeEEEEEEeCCHHHHHHHHcCChhhhhhcchH
Confidence 456889999876 4444443 2467778999999999999999 99999999
Q ss_pred hhhHHHhhCCCcccccccCChhHHHHHHHHHhhhcCCCCchhhhcc------ccccCCCceeccccccccccchhhHHHH
Q psy3833 77 VEKARLNVATEKSLYLSSLNKEEQYASWMAACRLASKGRTLADSSY------EAEQTGPHSRLRPDRVAMQDATAQMAML 150 (1087)
Q Consensus 77 ~~~~~~~l~~~~~l~~~~~~~eeq~a~wmaA~~la~kGkTLAdKg~------E~VrpGe~V~l~~d~v~~qD~Tg~~a~~ 150 (1087)
|+|||+.||++.+..|+... +++ .+++|+||+||.+ +.+++|++|.++||+|++||+||||+++
T Consensus 354 ~~~a~~~l~~~~~~~f~~~~---~~~-------~~~mg~TlaEKIl~~~~g~~~v~~G~~v~~~~D~v~~qD~Tg~~~~~ 423 (865)
T 1l5j_A 354 TTKAREALGLPHSDVFRQAK---DVA-------ESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMTRD 423 (865)
T ss_dssp HHHHHHHTTCCCCCSSCCCC---CCC-------CCCSCCCHHHHHHHHTTTSSCCCTTCEECCBCSEEEECTTTHHHHHH
T ss_pred HHHHHHHcCCCchhhccCCC---CCC-------CCCCCccHHHHHHHHHhCCCccCCCCEEEEEeeEEEEeccCcHHHHH
Confidence 99999999999777776443 222 2688999999955 4589999999999999999999999999
Q ss_pred HHHHcCCCcccCCcee--eecccccccCCCchhHHHHhhhhHHHHHHHHHHHHhcCceecCCCCcceeeecccccccCCC
Q psy3833 151 QFISSGLPRVAVPSTI--HCDHLIEAQVGGVEDLKRAKSQNEEVYAFLRSAGAKYGVGFWHPGSGIIHQIILENYAFPGL 228 (1087)
Q Consensus 151 ~~~~~g~~~v~~p~~~--~~DH~v~a~~~~~~d~~~~~~~n~e~~~fl~~~~~~~Gi~~~~pG~GIiHqv~lE~~~~Pg~ 228 (1087)
+|+++|.. ++.++.+ +.||.++... . .+.+.++++++|++++|+.+|+||+|||||| +++|++||+
T Consensus 424 ~~~~lg~~-~~~~d~vv~~~dh~~~~~~-----~-----~~~e~~~~~~~Fa~~~g~~~~~pg~GI~Hq~-l~~~~~PG~ 491 (865)
T 1l5j_A 424 ELKDLACL-GFSADLVMQSFCHTAAYPK-----P-----VDVNTHHTLPDFIMNRGGVSLRPGDGVIHSW-LNRMLLPDT 491 (865)
T ss_dssp HHHHTTCC-SCCSSCEEECCCSSSSSCC-----H-----HHHHHHHHHHHHHHTTTCEECCTTSBCHHHH-HGGGCCTTC
T ss_pred HHHHcCCC-cCCCCeEEEECCCCCcCCC-----H-----HHHHHHHHHHHHHHHcCCeEeCCCCceeeee-ecccccccc
Confidence 99999854 4555543 6899876432 1 2456788999999999989999999999999 567999999
Q ss_pred eEecCCCCccCccccceeeccccHHHHHHHHhcCceEeecCcEEEEEEECcCCCCcchhHHHHHHH------HHhcc---
Q psy3833 229 LMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVA------GILTV--- 299 (1087)
Q Consensus 229 ~~vGtDSHT~~~GglGala~GvG~~d~a~~ma~g~~~l~vPe~V~V~l~G~l~~gVt~kDviL~i~------g~L~~--- 299 (1087)
+++||||||||+|| +|||.|+++++.+|++|++|+++||+|+|+|+|+|++|||+|||||+|+ |.||+
T Consensus 492 ~ivGtDSHT~~~~G---lg~g~G~g~vA~a~atG~~~~~vPevv~V~l~G~L~~gVtaKDvIL~i~~~~i~~G~l~v~k~ 568 (865)
T 1l5j_A 492 VGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKK 568 (865)
T ss_dssp EEEESSTTCCCSSS---EECCCCHHHHHHHHHHSBCCEECCCEEEEEEESCCCTTCCHHHHHHHHHHHHHHTTSBCSCST
T ss_pred eEEeCCCCcccccc---ceeCccHHHHHHHHHcCceeecCCCEEEEEEEeeCCCCCChHHHHHHHHHHHHhccccccccc
Confidence 99999999999998 6788999999999999999999999999999999999999999999995 55666
Q ss_pred ---cCcccEEEEEeCCcccccCccccccccccccccccccccccccchhhcccCCCccccccCCCccccccccccccccc
Q psy3833 300 ---KGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGATTS 376 (1087)
Q Consensus 300 ---~G~~g~ivEf~G~gv~~LSv~~R~Ti~NMs~E~~A~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (1087)
.|++|++|||. ||++||+++|||||||
T Consensus 569 g~~~~~~G~~vEf~--Gv~~LS~~~R~TI~NM------------------------------------------------ 598 (865)
T 1l5j_A 569 GKKNIFSGRILEIE--GLPDLKVEQAFELTDA------------------------------------------------ 598 (865)
T ss_dssp TCCBTTTTSEEEEE--SCTTCCHHHHHHHHHG------------------------------------------------
T ss_pred CcccceeeEEEEEc--ccccCChhhhhhHhhc------------------------------------------------
Confidence 34489999996 5999999999999999
Q ss_pred cccccccccccccccCCCCcccccccccCceeecccCc-HHHHHHHHh----------cCCh------HHHHHHHHhh--
Q psy3833 377 VFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYN-NRMYDFLKA----------TLRE------DIAKEAMKYQ-- 437 (1087)
Q Consensus 377 ~~~~~~~~~i~~~~~~~~~~~~~m~~E~GAt~~if~~d-~~t~~yL~~----------~~r~------~~~~~~~~~~-- 437 (1087)
++|+||++|+||+| ++|.+||+. ++|. +..+..+.|.
T Consensus 599 ------------------------a~E~GA~~g~f~~dDe~t~~YL~~~~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~ 654 (865)
T 1l5j_A 599 ------------------------SAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLAN 654 (865)
T ss_dssp ------------------------GGTTTCSEEEECCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHS
T ss_pred ------------------------chhcCCeeEEEeCCHHHHHHHHHhhhhhhhhhhccCCccchhHHHHHHHHHHHHhc
Confidence 55666666666643 555666665 4542 1112223332
Q ss_pred -ccCCCCCCCcccEEEEEeCCCC-ccccccCCCCCccccccccchhhhhCCCccceeEEEEeccCCCChHHHHHHHHHHH
Q psy3833 438 -SLLTPDEGAKYDQLIELDLNTL-EPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAK 515 (1087)
Q Consensus 438 -~~l~aD~dA~Y~~vieiDLs~i-eP~vA~P~~Pd~v~~lse~~~~~~~~g~~~~Id~vfIGSCTn~~~~dl~aAA~ilk 515 (1087)
.+|.+|+||+|+++|+||||+| ||+||+|++|||++|++++++. +||+||||||||+ ++||++||+|||
T Consensus 655 ~~~l~~D~dA~Y~~~ieiDLs~l~eP~VA~P~~Pd~~~~vse~~~~--------~Id~v~IGSCTtn-~eDl~~AA~ilk 725 (865)
T 1l5j_A 655 PELLEADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGE--------KIDEVFIGSCMTN-IGHFRAAGKLLD 725 (865)
T ss_dssp CCCCCCCTTCCCSEEEEEEGGGCCSCEEECTTCTTCEEEGGGTTTC--------BCCEEEECSTTCC-HHHHHHHHHHHH
T ss_pred cceeccCCCCcEEEEEEEEcccCCCCEecCCCChHhccchhhhccc--------ccceEEEecCCCC-HHHHHHHHHHHc
Confidence 3689999999999999999999 8999999999999999999864 6999999999988 999999999999
Q ss_pred HhHhCCCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCccccccCCCcccccCCcceeEEeecCCCCCCCCC
Q psy3833 516 EAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRND 595 (1087)
Q Consensus 516 ~a~~~~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~CiG~~~~~~v~~g~~~~~vsT~NRNF~gR~G 595 (1087)
+ +++++++++||+|||++|+++|+++|++++|.++||+|.+||||+|+||+++ +.+|+ +++||+||||+||||
T Consensus 726 g---~~v~~~v~~~V~PgS~~V~~~l~~eGl~~~l~~aGa~v~~pgCg~CiGn~~~--~~~ge--~~isTsNRNF~GR~G 798 (865)
T 1l5j_A 726 A---HKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQAR--VADGA--TVVSTSTRNFPNRLG 798 (865)
T ss_dssp H---SCSCCSSEEEECCSBHHHHHHHHHTTHHHHHHHHTCEECCSSCGGGTCSSSC--CCTTC--EEEESSSCCCTTSSS
T ss_pred C---cccCCCCCEEEECCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCc--CCCCC--EEEecCCcCCCCCCC
Confidence 8 4588999999999999999999999999999999999999999999999854 66666 789999999999998
Q ss_pred CCCCcceeecCHHHHHHHHHhCccccCCC
Q psy3833 596 ANPATHAFVTSPELVTALAIKGTLAFDPR 624 (1087)
Q Consensus 596 ~~p~~~~yLaSp~lvAAsAiaG~I~fdp~ 624 (1087)
+++++||+||++|||+|++|+|+ ||+
T Consensus 799 --~~~~~yLaSP~~vAAsAiaG~i~-~p~ 824 (865)
T 1l5j_A 799 --TGANVFLASAELAAVAALIGKLP-TPE 824 (865)
T ss_dssp --TTCEEEECCHHHHHHHHHHSBCC-CHH
T ss_pred --CCcceEECCHHHHHHHHhCCcCC-CHH
Confidence 46899999999999999999998 665
No 4
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=100.00 E-value=2.1e-58 Score=462.72 Aligned_cols=146 Identities=48% Similarity=0.885 Sum_probs=111.7
Q ss_pred CCCCCCCCCCchhhHHHHHhhcccccCCcccccCCCCCCCCccccccceecccccchhcccceeEEEEeceeeeeecChh
Q psy3833 938 QPTDTSSISLADDDIDAALTDLQVTLEGSHISLASPDIMHVPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSRE 1017 (1087)
Q Consensus 938 ~~~~~~~~~~~~Ddid~aL~~Lev~~eg~~~~~~~~~~~~~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~ 1017 (1087)
++++..++++.+||||+||++|||+|||++.+++++|||+||+|+||||+|||||||||+||||||+|||++|+||||||
T Consensus 6 ~~~~~~~~~~~~ddidaaL~~Lev~leg~~~~~~~~~it~iPeL~dyLk~~~pk~~tLKgyKryWFv~kd~~LsyYKskE 85 (173)
T 4f7h_A 6 SENHLNNSDKEVDEVDAALSDLEITLEGGKTSTILGDITSIPELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKE 85 (173)
T ss_dssp ---------------------------------CCCCGGGTTCEEEEEEEECCBTTBCCCCEEEEEEEETTEEEEESCGG
T ss_pred cccccccCCccchHHHHHHHHhHHhhccCcccccchhhhcChhhHhHHHhhcchhcccccceeEEEEEeCCEEEEEcCHh
Confidence 44566665667999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCceeecCCCceecccccccCceeEEEEEecCCCCCcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1018 DAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1018 ~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
|+. ++|+++||||||||+|||||+++||+|||+||+++||+|+|||||||+|||+||||||||.|-
T Consensus 86 e~~-geP~~~I~LrGCEVtpDVnva~~Kf~IkL~vP~~~gm~e~~Lrcd~E~qya~WMAAcrLAskG 151 (173)
T 4f7h_A 86 ESS-GTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMAACRLASKG 151 (173)
T ss_dssp GCS-SCCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred Hhc-CCCceEEecCceEEeccccccccceeEEEeccCCCCcceeeeecCCHHHHHHHHHHhhhhccC
Confidence 999 899999999999999999999999999999999999999999999999999999999999875
No 5
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=100.00 E-value=4.7e-51 Score=405.84 Aligned_cols=117 Identities=44% Similarity=0.886 Sum_probs=96.8
Q ss_pred ccccCCCCCCCCccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCcee
Q psy3833 967 HISLASPDIMHVPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKF 1046 (1087)
Q Consensus 967 ~~~~~~~~~~~~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~ 1046 (1087)
..+++++|||+||||+||||+|||||||||+||||||+||||+|+|||||||+. ++|+++|||+||||+|||||+++||
T Consensus 14 ~~~~~~~~it~iPeL~dyLk~~~pkrltLKgfKryWfv~kDt~LsyYKSkEe~~-geP~~~inLrGCEVtPDVnva~~Kf 92 (165)
T 4bbk_A 14 VLFQGPEDITDIPKLADYLKLFRPKKLMLKACKQYWFVFKDTSIAYFKNKELEQ-GEPIEKLNLRGCEIVPDVNVSGRKF 92 (165)
T ss_dssp ------------CCEEEEEEEEC-------CCEEEEEEEETTEEEEESSGGGTT-SCCSEEEECTTCEEEEEEETTTTEE
T ss_pred cHhHHhhhhccChhhHhHHHhhcccccccccceeEEEEEeCCEEEEEcCHHHhc-CCCceEEecCccEEeccccccccee
Confidence 456899999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EEEEEecCCCCCcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1047 IIKLEVPAADGMSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1047 ~ikl~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
+|||+||+++||+|+|||||||+|||+||||||||.|-
T Consensus 93 ~ikL~ip~~~gm~e~~LrcdsE~QYa~WMAAcrLAskG 130 (165)
T 4bbk_A 93 GIKLLIPVADGMNEVYLRCDHEDQYARWMAACILASKG 130 (165)
T ss_dssp EEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred eEEEecCCCCcceeeeeecCCHHHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999999999874
No 6
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=3e-40 Score=324.34 Aligned_cols=110 Identities=49% Similarity=0.976 Sum_probs=107.9
Q ss_pred CCCCCccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEec
Q psy3833 974 DIMHVPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVP 1053 (1087)
Q Consensus 974 ~~~~~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p 1053 (1087)
.+|+||||+||||+|||||+|+|+||||||+|+|++|+|||+++|+. ++|+.+|||+||||+||||++++||+|||++|
T Consensus 4 ~~~~~pel~~~l~~~~pkk~tlK~~KrrWFvlk~~~L~YyK~kee~~-~ePig~I~L~gceV~pd~~~~~~kf~ikl~iP 82 (137)
T 2ys3_A 4 GSSGIPELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAP-GDPIQQLNLKGCEVVPDVNVSGQKFCIKLLVP 82 (137)
T ss_dssp CSCSCCCEECCCEECCTTSCCSSSSCCCEEEECSSCEEEESSTTTTT-SCCSCCBCTTTCEEEECCBGGGTBEEEEEEEE
T ss_pred ccCCCcchhHHHHhhCccccccccceeEEEEEeCCEEEEECCchhcc-CCCceEEECCCCEEeccccccCCceEEEEEcc
Confidence 58899999999999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred CCCCCcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1054 AADGMSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1054 ~~~~~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
+++||+|+||+||||+||++||||||||.++
T Consensus 83 s~~g~r~y~l~cdsEeqy~~WMaA~rlAskg 113 (137)
T 2ys3_A 83 SPEGMSEIYLRCQDEQQYARWMAGCRLASKG 113 (137)
T ss_dssp CSSSEEEEEEEESSHHHHHHHHHHHHHHHTS
T ss_pred CCCCceEEEEECCCHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999876
No 7
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=100.00 E-value=2.7e-36 Score=305.62 Aligned_cols=149 Identities=22% Similarity=0.286 Sum_probs=128.0
Q ss_pred eeeecCccccccccCCCCcccccCccccccccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEEecCCC
Q psy3833 699 LIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDEN 778 (1087)
Q Consensus 699 Ll~~gd~iTTDhIsPAG~~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG~n 778 (1087)
+++++|+||||||+|| +||+ +++++++++++|.+. .|+|+.++++ ++|||||+|
T Consensus 7 ~~~~~dnidTD~IiPa-~~l~-~~~~~~l~~~~f~~~---------------------~p~f~~~~~~---g~iivag~n 60 (163)
T 1v7l_A 7 VWKFGDDISTDEITPG-RYNL-TKDPKELAKIAFIEV---------------------RPDFARNVRP---GDVVVAGKN 60 (163)
T ss_dssp EEECCSCCBHHHHSCT-TSCC-CSCHHHHHHHTTTTT---------------------CTTHHHHCCT---TCEEECCSS
T ss_pred EEEcCCCCChhccchH-HHhC-CCCHHHHHHHhCCcc---------------------CcchHHhCCC---CCEEEecCc
Confidence 5699999999999998 7998 889999999998754 2667776543 479999999
Q ss_pred cCCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecCCCCcccCCCCCEEEEccccCcCCCCcEEEEEEe
Q psy3833 779 YGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRISLVGLKDLAPGKPVTAQIKH 858 (1087)
Q Consensus 779 yG~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l~~gD~i~I~~l~~l~pg~~v~v~v~~ 858 (1087)
||||||||||||+++++|++||||+||||||++|++|+|+|||+|+ ++.+++||+|+|+ +.++ .| +
T Consensus 61 fG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~~l~~gd~i~id----l~~~-~v----~- 126 (163)
T 1v7l_A 61 FGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIGIPLLLGK----TEGLKDGDLVTVN----WETG-EV----R- 126 (163)
T ss_dssp BTBSCCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHHTCCEEESC----CTTCCTTCEEEEE----TTTT-EE----E-
T ss_pred CCCCCCHHHHHHHHHHhCCCEEEEchHHHHHHhhHHHCCCceEEec----HHHcCCCcEEEEE----ccCC-EE----E-
Confidence 9999999999999999999999999999999999999999999996 6789999999997 3444 22 2
Q ss_pred cCCeEEEEEEEecCCHHHHHHHHhCCCCCchh
Q psy3833 859 ADGKVEEIKLNHSMNEQQITWFQAELPTRIPA 890 (1087)
Q Consensus 859 ~dG~~~~~~l~~~lt~~E~e~~~aGGiLn~sr 890 (1087)
+|++ ++++ +.+++.|++++++||+|||.+
T Consensus 127 -~g~~-~~~~-~~~~~~~~~~l~aGGll~~~~ 155 (163)
T 1v7l_A 127 -KGDE-ILMF-EPLEDFLLEIVREGGILEYIR 155 (163)
T ss_dssp -ETTE-EEEC-EECCHHHHHHHHTTSHHHHHH
T ss_pred -CCcE-EEEE-EcCCHHHHHHHHcCCHHHHHH
Confidence 5665 4555 478999999999999999754
No 8
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.1e-35 Score=303.02 Aligned_cols=153 Identities=24% Similarity=0.260 Sum_probs=128.1
Q ss_pred ceeeeeecCccccccccCCCCcccccCccccccccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEEec
Q psy3833 696 MVVLIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVG 775 (1087)
Q Consensus 696 arvLl~~gd~iTTDhIsPAG~~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IVVA 775 (1087)
.+ +++++|+||||||+|+ +||+ +.+++.+++++|.+. .|+|+.+++. ++||||
T Consensus 5 g~-v~~~~dnIdTD~IiPa-~~l~-~~~~~~l~~~~f~~~---------------------~p~f~~~~~~---~~iiva 57 (170)
T 2pkp_A 5 GR-AHKFGDDVDTDAIIPG-PYLR-TTDPYELASHCMAGI---------------------DENFPKKVKE---GDVIVA 57 (170)
T ss_dssp EE-EEECCSCCBHHHHSCG-GGGS-CCCHHHHHTTTTTTT---------------------CTTHHHHCCT---TCEEEE
T ss_pred EE-EEECCCCCChhhcChH-HHhC-CCCHHHHHHHhcccC---------------------CCchHHhCCC---CCEEEe
Confidence 35 5789999999999998 6997 778888888888643 2667666543 589999
Q ss_pred CCCcCCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecCCCCcccCCCCCEEEEccccCcCCCCcEEEE
Q psy3833 776 DENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRISLVGLKDLAPGKPVTAQ 855 (1087)
Q Consensus 776 G~nyG~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l~~gD~i~I~~l~~l~pg~~v~v~ 855 (1087)
|+|||||||||||||+++++|++||||+||||||++||+|+|+|||+|+ ++.|++||+|+|+ +.++ . ++
T Consensus 58 G~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~~l~~gd~i~id----l~~~-~--v~ 126 (170)
T 2pkp_A 58 GENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPIIAN----TDEIKDGDIVEID----LDKE-E--IV 126 (170)
T ss_dssp CTTBTBSSCCHHHHHHHHTTTCCEEEESCBCHHHHHHHHHHTCEEEECC----GGGCCTTCEEEEE----TTTT-E--EE
T ss_pred cCCCCCCCCHHHHHHHHHHhCCcEEEEchHHHHHHhhHHHCCCceEEec----HHHcCCCcEEEEE----CCCC-E--EE
Confidence 9999999999999999999999999999999999999999999999997 6789999999997 3344 2 22
Q ss_pred EEecCCeEEEEEEEecCCHHHHHHHHhCCCCCchh
Q psy3833 856 IKHADGKVEEIKLNHSMNEQQITWFQAELPTRIPA 890 (1087)
Q Consensus 856 v~~~dG~~~~~~l~~~lt~~E~e~~~aGGiLn~sr 890 (1087)
.+.+|+++++ +.+++.|++++++||+|||.+
T Consensus 127 -~~~~g~~~~~---~~~~~~~~~~l~aGGll~~~~ 157 (170)
T 2pkp_A 127 -ITNKNKTIKC---ETPKGLEREILAAGGLVNYLK 157 (170)
T ss_dssp -EGGGTEEEEC---BCCCHHHHHHHHTTSHHHHHH
T ss_pred -ECCCCeEEEE---EeCCHHHHHHHHcCCHHHHHH
Confidence 2346765444 368999999999999999864
No 9
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=2.9e-33 Score=285.90 Aligned_cols=156 Identities=26% Similarity=0.299 Sum_probs=126.4
Q ss_pred cceeeeeecCccccccccCCCCcccccCccccccccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEEe
Q psy3833 695 DMVVLIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAV 774 (1087)
Q Consensus 695 ~arvLl~~gd~iTTDhIsPAG~~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IVV 774 (1087)
..+++ +++|+||||+|+|+ +||+ +.+.+.+++++|.+. .|+|+.+|+. ++|||
T Consensus 6 ~g~v~-~~gdnIdTD~IiPa-~~l~-~~~~~~l~~~~f~~~---------------------~p~F~~~~~~---g~IlV 58 (176)
T 3vba_A 6 KGRVW-KFGNNVDTDAILPA-RYLV-YTKPEELAQFVMTGA---------------------DPDFPKKVKP---GDIIV 58 (176)
T ss_dssp EEEEE-ECCSSCBHHHHSCG-GGTT-CCSHHHHGGGTTTTT---------------------CTTHHHHCCT---TCEEE
T ss_pred EEEEE-EeCCCcchhhcCcH-HHhC-cCCHHHHHHhhCcCC---------------------CccHHHhcCC---CCEEE
Confidence 45665 88999999999998 7986 466777788887643 2667777653 47999
Q ss_pred cCCCcCCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecCCCCcccCCCCCEEEEccccCcCCCCcEEE
Q psy3833 775 GDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRISLVGLKDLAPGKPVTA 854 (1087)
Q Consensus 775 AG~nyG~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l~~gD~i~I~~l~~l~pg~~v~v 854 (1087)
||+|||||||||||+|+++.+|++||||+||||||++|++|+|+||++++ ++++.++.||+|+|+ +. .+ ++
T Consensus 59 aG~NFG~GSSREhA~~al~~~Gi~aVIA~SFA~If~~N~in~Gl~~i~~~--~~~~~~~~gd~i~id-l~---~~---~v 129 (176)
T 3vba_A 59 GGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGLPLIECK--GISEKVNEGDELEVN-LE---TG---EI 129 (176)
T ss_dssp ECTTBTBSSCCTHHHHHHHHTTCCEEEESCBCHHHHHHHHHTTCCEEECT--THHHHCCTTCEEEEE-TT---TC---EE
T ss_pred eCCCccCCccHHHHHHHHHHhCCcEEEeccHHHHHHhhHHHcCCCeEEcc--hHHHhcCCCCEEEEE-CC---CC---EE
Confidence 99999999999999999999999999999999999999999998888765 468899999999997 32 22 23
Q ss_pred EEEecCCeEEEEEEEecCCHHHHHHHHhCCCCCchh
Q psy3833 855 QIKHADGKVEEIKLNHSMNEQQITWFQAELPTRIPA 890 (1087)
Q Consensus 855 ~v~~~dG~~~~~~l~~~lt~~E~e~~~aGGiLn~sr 890 (1087)
++ ..+|+. +++. .+++.+++++++||++||.+
T Consensus 130 ~~-~~~g~~--~~~~-~l~~~~~~ii~aGGli~~~k 161 (176)
T 3vba_A 130 KN-LTTGEV--LKGQ-KLPEFMMEILEAGGLMPYLK 161 (176)
T ss_dssp EE-TTTCCE--EECC-CCCHHHHHHHHHTSHHHHHH
T ss_pred Ee-CCCCeE--EEEe-cCCHHHHHHHHcCCHHHHHH
Confidence 22 234554 4444 68999999999999999664
No 10
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=99.95 E-value=2.6e-29 Score=263.55 Aligned_cols=162 Identities=20% Similarity=0.261 Sum_probs=117.5
Q ss_pred cccceeeeeecCccccccccCCCCcccccCccccccccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcE
Q psy3833 693 IKDMVVLIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWV 772 (1087)
Q Consensus 693 i~~arvLl~~gd~iTTDhIsPAG~~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~I 772 (1087)
...++|+...+|+||||||+|| +||+. -..+++..++|....... . +|+. .|+|.....+...+.|
T Consensus 23 ~~~g~v~~l~~dnIdTD~IiPa-~~L~~-~~~~~l~~~~f~~~r~~~---------~-~g~~--~p~f~~~~~~~~~~~I 88 (213)
T 2hcu_A 23 IYTGTTVPLMNDNIDTDQILPK-QFLKL-IDKKGFGKYLMYEWRYLD---------N-NYTE--NPDFIFNQPEYREASI 88 (213)
T ss_dssp EEEEEEEEECCSCCCHHHHSCG-GGGGS-CTTSCCGGGTTHHHHBSS---------T-TCCB--CTTSGGGSGGGTTCCE
T ss_pred EEEEEEEEcCCCCCChhhcchH-HHhCc-CCHHHHHHHHhhcccccc---------c-CCCC--CCCccccchhhcCCcE
Confidence 3567898888999999999998 69864 234456666665442110 0 1111 1222221111222589
Q ss_pred EecCCCcCCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecCCCCcccC---CCCCEEEEccccCcCCC
Q psy3833 773 AVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKI---QPNDRISLVGLKDLAPG 849 (1087)
Q Consensus 773 VVAG~nyG~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l---~~gD~i~I~~l~~l~pg 849 (1087)
||||+|||||||||||+|+++.+||+||||+||||||++|++|+|||||+|++ +++++| ..||+|+|+ ++ .
T Consensus 89 lvaG~NfGcGSSREhA~~al~~~Gi~aVIA~SFArIF~~N~in~GlLpl~~~~-~~~~~l~~~~~G~~i~VD-l~----~ 162 (213)
T 2hcu_A 89 LITGDNFGAGSSREHAAWALADYGFKVIVAGSFGDIHYNNDLNNGILPIIQPK-EVRDKLAKLKPTDEVTVN-LF----E 162 (213)
T ss_dssp EEECSSBTCSSCCHHHHHHHHHHTCCEEEESCBCHHHHHHHHTTTCEEEECCH-HHHHHHHTSCTTCEEEEE-TT----T
T ss_pred EEecCCCCCCCCHHHHHHHHHHhCCcEEEEchHHHHHHHHHHHcCCCcEEeCH-HHHHHHhccCCCCEEEEE-CC----C
Confidence 99999999999999999999999999999999999999999999999999964 457788 999999997 32 2
Q ss_pred CcEEEEEEecCCeEEEEEEEecCCHHHHHHHHhC
Q psy3833 850 KPVTAQIKHADGKVEEIKLNHSMNEQQITWFQAE 883 (1087)
Q Consensus 850 ~~v~v~v~~~dG~~~~~~l~~~lt~~E~e~~~aG 883 (1087)
++|+ ..+| +++ +.+++..++.+.+|
T Consensus 163 ~~I~----~~~g---~~~--f~i~~~~k~~l~~G 187 (213)
T 2hcu_A 163 QKIY----SPVG---DFS--FDIDGEWKHKLLNG 187 (213)
T ss_dssp TEEE----ETTE---EEE--CCCCHHHHHHHHTT
T ss_pred CEEE----ECCc---eEE--EeCCHHHHHHHHcC
Confidence 3332 2334 333 34789999999988
No 11
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=99.95 E-value=2.6e-29 Score=255.15 Aligned_cols=152 Identities=24% Similarity=0.276 Sum_probs=117.6
Q ss_pred cccceeeeeecCccccccccCCCCcccccCccccccccccccccccccCcccceEeecCCCcCChHHHHH---HHHHcCC
Q psy3833 693 IKDMVVLIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVAR---AYKAAGV 769 (1087)
Q Consensus 693 i~~arvLl~~gd~iTTDhIsPAG~~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~---~yk~~g~ 769 (1087)
....+++.+.+|+|+||+|+|+ +||+. .+.+.+.+++|.+.. . .|+|+. .|+.
T Consensus 9 ~~~G~~~~l~~dnIdTD~IiPa-~~L~~-~~~~~l~~~~f~~~R-------------~------~p~F~~~~~~~~~--- 64 (171)
T 3h5j_A 9 THSGIGVPLRRSNVDTDQIIPA-VFLKR-VTRTGFEDGLFAGWR-------------S------DPAFVLNLSPFDR--- 64 (171)
T ss_dssp EEEEEEEEECCCSCCHHHHSCG-GGTTC-CSCSCCGGGTTTTGG-------------G------STTSGGGSTTGGG---
T ss_pred EEEEEEEEccCCccCcccCCch-hhcCC-CCHHHHHHHhhccCc-------------C------CcCccccccccCC---
Confidence 4567888888999999999998 59875 456677788887542 0 133332 2332
Q ss_pred CcEEecCCCcCCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecCCCCcccC------CCCCEEEEccc
Q psy3833 770 PWVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKI------QPNDRISLVGL 843 (1087)
Q Consensus 770 ~~IVVAG~nyG~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l------~~gD~i~I~~l 843 (1087)
..|||||+|||||||||||+|+++.+|+++|||+||+|||++|++|+|+||+++++ ++++.| +.||+|+|+ +
T Consensus 65 ~~IlVaG~NFGcGSSREhA~~al~~~Gi~~VIA~Sfa~If~~N~~n~Gllpi~~~~-~~~~~l~~~~~~~~g~~i~VD-l 142 (171)
T 3h5j_A 65 GSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVAQ-DDVELLWKLIEQSPGLEITAN-L 142 (171)
T ss_dssp CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESSBCHHHHHHHHHHTCEEEECCH-HHHHHHHHHHHHSTTCEEEEE-T
T ss_pred CcEEEeCCCccCCcCHHHHHHHHHHhCCcEEEECcHHHHHHhHHHHcCCceEEeCH-HHHHHHHHHhhcCCCcEEEEE-C
Confidence 47999999999999999999999999999999999999999999999999999974 346666 899999997 3
Q ss_pred cCcCCCCcEEEEEEecCCeEEEEEEEecCCHHHHHHHHhC
Q psy3833 844 KDLAPGKPVTAQIKHADGKVEEIKLNHSMNEQQITWFQAE 883 (1087)
Q Consensus 844 ~~l~pg~~v~v~v~~~dG~~~~~~l~~~lt~~E~e~~~aG 883 (1087)
+ .++|+ .+|+.+. +.+.+..++.+.+|
T Consensus 143 ~----~~~i~-----~~g~~~~----F~i~~~~k~~ll~G 169 (171)
T 3h5j_A 143 Q----DRIIT-----AATVVLP----FKIDDHSAWRLLEG 169 (171)
T ss_dssp T----TTEEE-----ETTEEEE----CBCCHHHHHHHHHT
T ss_pred C----CCEEE-----ECCEEEE----EEECHHHHHHHHhC
Confidence 2 23332 2455433 34668889888887
No 12
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Probab=99.95 E-value=4.9e-29 Score=259.28 Aligned_cols=162 Identities=23% Similarity=0.222 Sum_probs=119.0
Q ss_pred ccceeeeeecCccccccccCCCCcccccCccccccccccccccccccCcccceEeecCCCcCChHHHHHHHHHcCCCcEE
Q psy3833 694 KDMVVLIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVA 773 (1087)
Q Consensus 694 ~~arvLl~~gd~iTTDhIsPAG~~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~~~~~~G~~~~ipd~A~~yk~~g~~~IV 773 (1087)
...+++...+|+|+||+|+|+ +||+. ...+.+..++|.+.... .+|+....|+|.....+.....||
T Consensus 10 ~~G~a~~l~~dnIDTD~IIP~-~fL~~-~~~~~lg~~~f~~~R~~-----------~~g~~~~~pdF~~n~~~~~~~~Il 76 (203)
T 3q3w_A 10 HKGIACPLEYANIDTDQIIPK-QFLLA-VSKQGFGKHLFHDLRYL-----------DDKESVLNMDFNLNKKEYQNSSIL 76 (203)
T ss_dssp EEEEEEEECCSSCBHHHHSCG-GGCBS-SCSSCSGGGTTHHHHBS-----------SSSSCSBCTTSGGGSGGGTTEEEE
T ss_pred EEEEEEECCCcccChhhcchH-HHcCc-CCHHHHHHhhhhhhhcc-----------ccCCCCCCCChhhcccccCCCCEE
Confidence 456776666799999999998 79874 34566778888765321 223221235554431112224799
Q ss_pred ecCCCcCCCccchhhccccccccceEEEEechhHHHhhhhccCccceEEecCCCCcccC------CCCCEEEEccccCcC
Q psy3833 774 VGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKI------QPNDRISLVGLKDLA 847 (1087)
Q Consensus 774 VAG~nyG~GSSRE~Aa~~~r~lGv~aVIA~SFarI~~~Nlin~GllpL~f~~~~~~~~l------~~gD~i~I~~l~~l~ 847 (1087)
|||+|||||||||||+|+++.+||+||||+||+|||++|++|+||||+++++ +.++.| ..|++|+|+ +
T Consensus 77 VaG~NFGcGSSREhA~~Al~~~Gi~aVIA~SFa~IF~~N~~n~Gll~i~~~~-~~~~~l~~~~~~~~g~~i~VD-L---- 150 (203)
T 3q3w_A 77 VSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNGLLTIELAK-DEVLEIVDELKKSQDKNIEIS-L---- 150 (203)
T ss_dssp EECSSBTBSSCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHTTCEEEECCH-HHHHHHHHHHHHCSCCEEEEE-T----
T ss_pred EeCCCCCCCCcHHHHHHHHHHcCceEEEECcHHHHHHHHHHhCCCCeEEeCH-HHHHHHHHHhhcCCCCEEEEE-C----
Confidence 9999999999999999999999999999999999999999999999999975 335555 789999997 3
Q ss_pred CCCcEEEEEEecCCeEEEEEEEecCCHHHHHHHHhC
Q psy3833 848 PGKPVTAQIKHADGKVEEIKLNHSMNEQQITWFQAE 883 (1087)
Q Consensus 848 pg~~v~v~v~~~dG~~~~~~l~~~lt~~E~e~~~aG 883 (1087)
..++|+ .+|+.+.| .+.+..++.+.+|
T Consensus 151 ~~~~i~-----~~g~~~~f----~i~~~~r~~Ll~G 177 (203)
T 3q3w_A 151 LEKRVF-----FKDKIFSF----DLDDFHRICLLEG 177 (203)
T ss_dssp TTTEEE-----ETTEEEEC----CCCHHHHHHHHHT
T ss_pred CCCEEE-----ECCEEEEE----EeCHHHHHHHHcC
Confidence 223333 24653333 3679999999998
No 13
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=99.89 E-value=2.9e-24 Score=259.92 Aligned_cols=252 Identities=19% Similarity=0.193 Sum_probs=159.8
Q ss_pred eecCHHHHHHHHHhCccccCCCCCCC-CCCCCCCee-ecC-CCCCCCCC--------CCcCCC--CccccCCCC---CCC
Q psy3833 603 FVTSPELVTALAIKGTLAFDPRSDTL-TGSDGKPFK-LRD-PFGDELPT--------KGFDPG--VDTYQPPPK---DGS 666 (1087)
Q Consensus 603 yLaSp~lvAAsAiaG~I~fdp~~d~L-~~~dG~~v~-l~d-P~~~eip~--------~~~~~~--~~~~~~~~~---~~~ 666 (1087)
||+|+ |.+.+..+.|+.+...+.| +...|..|. |.| -+..++.. ..+..+ .+.+..... ...
T Consensus 67 fL~~i--~~~~~~~~~i~~~~a~~lLg~m~gG~nv~~L~d~~~~~~~a~~a~~~l~~~~l~~d~f~~v~~~~~~gn~~a~ 144 (865)
T 1l5j_A 67 FLAAI--AKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDALDDAKLAPIAAKALSHTLLMFDNFYDVEEKAKAGNEYAK 144 (865)
T ss_dssp HHHHH--HTTSSCBTTBCHHHHHHHHTTSCSSTTHHHHHHGGGCTTTHHHHHHHHHTCCTTTTHHHHHHHHHHTTCHHHH
T ss_pred HHHHH--HhCcccCCccCHHHHHHhcccCCCCCchHHHHHHhCchhhHHHHHHHHHhhhccHHHHHHHHHHHhccCHHHH
Confidence 88888 4567777777655555666 456787773 443 11233331 011000 000000000 011
Q ss_pred CceEecCCCCccccCCCCCCCCcccccccceeeeeecCccccccccCCCCcccccCccccccccccccccccccCcccce
Q psy3833 667 SLSVDVDPKSQRLQLLEPFDVWDKKDIKDMVVLIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLFLTATNAENGEMNKV 746 (1087)
Q Consensus 667 ~v~~~~~p~S~~l~~l~pf~~~~~~~i~~arvLl~~gd~iTTDhIsPAG~~L~~rg~~~~i~~~~l~~~~n~~~g~~~~~ 746 (1087)
.+.+.|.+.+-. -..|+++ ..+ ..++ ++++|+|+||+|||+ +||..+...+....++|.++...- ...+.
T Consensus 145 ~vl~swa~ae~F-t~~p~~~----~~i-~g~v-~~~~~nIdTD~IiPa-~~l~~~~d~~~~a~~lf~~~r~~~--~p~f~ 214 (865)
T 1l5j_A 145 QVMQSWADAEWF-LNRPALA----EKL-TVTV-FKVTGETNTDDLSPA-PDAWSRPDIPLHALAMLKNAREGI--EPDQP 214 (865)
T ss_dssp HHHHHHHTTHHH-HTSCCCC----SCE-EEEE-EEEEEEEEHHHHSCG-GGGGGTTSHHHHGGGTTCSCBTTB--CCSBT
T ss_pred HHHHhccccccc-ccCCCCC----ceE-EEEE-EecCCCCchhccCch-hhhhcCCCHHHHHHHHhhccccCC--Ccccc
Confidence 244556554321 2223332 123 4455 568999999999998 698556777778888887443100 00000
Q ss_pred EeecCCCcCChHHHHHHHHHcCCCcEEecCCCcCCCccchhhcccc-------------ccccceEEEEechhHHHhhhh
Q psy3833 747 KNQLTGQYGPVNEVARAYKAAGVPWVAVGDENYGEGSSREHAALEP-------------RHLGGRAIIVKSFARIHETNL 813 (1087)
Q Consensus 747 ~~~~~G~~~~ipd~A~~yk~~g~~~IVVAG~nyG~GSSRE~Aa~~~-------------r~lGv~aVIA~SFarI~~~Nl 813 (1087)
+...+. ...+.++..|.+ |+|+|+|||||||||||+|++ +.+| ++|||+||||||++|+
T Consensus 215 -----~~~~~~-~~i~~~~~~G~~-IlvaG~NFGcGSSREhA~~al~~~~g~~~~~~p~k~~G-~~VIA~SFA~IF~~N~ 286 (865)
T 1l5j_A 215 -----GVVGPI-KQIEALQQKGFP-LAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGG-GLCLGGKIAPIFFNTM 286 (865)
T ss_dssp -----TTBCSH-HHHHHHHTTSSC-EEEEEEEEEESCCCTHHHHHHHHHHSEEETTEEEEEEC-CEEEEEEECHHHHHHH
T ss_pred -----ccccch-hhhhhhhcCCCE-EEEECCceecCcchHHHHHHHHHHhcCCCcCCchhhcC-CeEEechHHHHHHHHH
Confidence 111112 223567777764 889999999999999999999 9999 9999999999999999
Q ss_pred ccCccceEEecCCCCcccCCCCCEEEEccccCcCCCCcEEEEEEecCCeE-EEEEEEecCCHHHHHHHHhCCCCCch
Q psy3833 814 KKQGLLPLTFANPSDYDKIQPNDRISLVGLKDLAPGKPVTAQIKHADGKV-EEIKLNHSMNEQQITWFQAELPTRIP 889 (1087)
Q Consensus 814 in~GllpL~f~~~~~~~~l~~gD~i~I~~l~~l~pg~~v~v~v~~~dG~~-~~~~l~~~lt~~E~e~~~aGGiLn~s 889 (1087)
+|+|+||++++ .+.+..||+|+|+ +. .+ . ++ ...+|+. ..|. .+++..+++++|||+++|.
T Consensus 287 ~n~Gllpi~~~----v~~l~~Gd~i~Id-l~---~g-~--I~-~~~~g~~~~~f~---~~p~~~~~~v~AGGli~~i 348 (865)
T 1l5j_A 287 EDAGALPIEVD----VSNLNMGDVIDVY-PY---KG-E--VR-NHETGELLATFE---LKTDVLIDEVRAGGRIPLI 348 (865)
T ss_dssp HHTTCEEEECC----CTTCCTTCEEEEE-TT---TT-E--EE-ETTTCCEEEECC---CSCTHHHHHHHHTSHHHHH
T ss_pred HHcCCceEEec----HhhcCCCCEEEEE-CC---CC-E--EE-EcCCCeEEEEEE---eCCHHHHHHHHcCChhhhh
Confidence 99999999985 5779999999997 32 22 2 22 2245653 3332 2378899999999999985
No 14
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.34 E-value=2.7e-12 Score=125.17 Aligned_cols=101 Identities=24% Similarity=0.433 Sum_probs=82.9
Q ss_pred CccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCCC
Q psy3833 978 VPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADG 1057 (1087)
Q Consensus 978 ~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~ 1057 (1087)
....++||+- | - .+|.+|+.|||+++..|+|||++++ .+|.-.|+|+||+|.++.+ ..++||++|..|....
T Consensus 7 ~v~k~GwL~K-~--g-~~k~WkrRWfVLk~~~L~yyk~~~~---~~p~G~I~L~~~~v~~~~~-~~~~~~F~i~~~~~~~ 78 (130)
T 1v88_A 7 GIVMADWLKI-R--G-TLKSWTKLWCVLKPGVLLIYKTQKN---GQWVGTVLLNACEIIERPS-KKDGFCFKLFHPLEQS 78 (130)
T ss_dssp SCCEEEEEEE-C--C-SSSSCEEEEEEEETTEEEEESCSSS---CCCCEEEECSSCEECCCCT-TTSSCEEEEECTTCCC
T ss_pred ceEEEeEEEE-e--C-CCCCceEEEEEEECCEEEEECCCCC---CCceEEEEcCCCEEEECCC-CCCCeEEEEEcCCccc
Confidence 3457899975 2 2 8999999999999999999999876 4589999999999986643 3455999999775321
Q ss_pred --------------------CcceEEeccCHHHHHHHHHHhhhhhcccC
Q psy3833 1058 --------------------MSEMFLRCENEEQYASWMAACRLQLTENN 1086 (1087)
Q Consensus 1058 --------------------~~e~~l~~~~e~qya~wmaacrl~~~~~~ 1086 (1087)
+...+|+||||++..+||.|++.|++.+.
T Consensus 79 i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~~~~ 127 (130)
T 1v88_A 79 IWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKSGP 127 (130)
T ss_dssp CSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTTTT
T ss_pred cccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHhcCC
Confidence 34578999999999999999999998654
No 15
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.03 E-value=5.6e-10 Score=103.25 Aligned_cols=100 Identities=19% Similarity=0.282 Sum_probs=83.5
Q ss_pred CccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCCC
Q psy3833 978 VPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADG 1057 (1087)
Q Consensus 978 ~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~ 1057 (1087)
.+.+++||.-- .-.+|.+|+.|||+++..|+|||++++.. |...|+|.+|.++....-.+++||++|.-+ +
T Consensus 7 ~~~~~G~L~K~---~~~~~~Wk~RwfvL~~~~L~yyk~~~~~~---~~~~i~L~~~~~~~~~~~~~~~~~F~i~~~---~ 77 (109)
T 1wgq_A 7 GSTMSGYLYRS---KGSKKPWKHLWFVIKNKVLYTYAASEDVA---ALESQPLLGFTVTLVKDENSESKVFQLLHK---G 77 (109)
T ss_dssp SCSCEEEEEEE---SSTTSCCEEEEEEEETTEEEEESCTTCSS---CSEEEECSSEEEEECCCSSCSSSEEEEEET---T
T ss_pred CCeEEEEEEeC---CCCCCCceeEEEEEeCCEEEEECCCCcCc---cCceEECCCCEEEECCCCCCCCcEEEEEeC---C
Confidence 46788999832 33479999999999999999999987644 888999999999988775566799988743 4
Q ss_pred CcceEEeccCHHHHHHHHHHhhhhhcccC
Q psy3833 1058 MSEMFLRCENEEQYASWMAACRLQLTENN 1086 (1087)
Q Consensus 1058 ~~e~~l~~~~e~qya~wmaacrl~~~~~~ 1086 (1087)
....+|+|+||++..+||.|.+.|...++
T Consensus 78 ~~~~~~~a~s~~e~~~Wi~al~~a~~~~~ 106 (109)
T 1wgq_A 78 MVFYVFKADDAHSTQRWIDAFQEGTVSGP 106 (109)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHSCCC
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHhccCC
Confidence 56699999999999999999999987665
No 16
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.94 E-value=1.2e-09 Score=104.35 Aligned_cols=94 Identities=14% Similarity=0.226 Sum_probs=76.8
Q ss_pred cccccceecccccchhcccceeEEEEece---eeeeecChhhhcCCCCceeecCCCceecc--cccccCceeEEEEEecC
Q psy3833 980 ELYDYLRCLKPKRFTMKAYKRLWVTCREL---QLRFYKSREDAQHSSPINEFSLRGCEVTP--DVNLSQGKFIIKLEVPA 1054 (1087)
Q Consensus 980 ~l~~~lk~~~~~~~~lk~~k~~w~~~~~~---~l~~~k~~~~~~~~~~~~~~~l~gcev~p--dv~~~~~k~~ikl~~p~ 1054 (1087)
.+++||.. +- + .|.+|+.|||+++. .|.|||+++|.. |+..|.|.||+|++ ...-.+++|++||. +
T Consensus 9 ~~~G~L~k-~~-~--~~~WkkrWfVL~~~~~~~Ly~Yk~~~d~~---p~g~I~L~g~~V~~~~~~~~~~~~~~Fki~-~- 79 (112)
T 2coc_A 9 LLCGPLRL-SE-S--GETWSEVWAAIPMSDPQVLHLQGGSQDGR---LPRTIPLPSCKLSVPDPEERLDSGHVWKLQ-W- 79 (112)
T ss_dssp SSEEEEEE-ES-S--SSCEEEEEEECCTTCTTCEEEECCTTCSS---SCSEECGGGCEEECCCSSSCCSSSEEEEEE-E-
T ss_pred eEEEEEEe-cC-C--CCCceEEEEEEECCCccEEEEECCCCccC---cceEEEcCCCEEEecCcccccCCCCEEEEe-c-
Confidence 36699976 32 2 89999999999995 699999988754 88999999999994 33345578999998 2
Q ss_pred CCCCcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1055 ADGMSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1055 ~~~~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
.++ -.||.++++++..+||.+.+.|.+-
T Consensus 80 -~~~-~y~f~A~s~e~~~~Wl~al~~A~~~ 107 (112)
T 2coc_A 80 -AKQ-SWYLSASSAELQQQWLETLSTAAHS 107 (112)
T ss_dssp -TTE-EEEEEESSHHHHHHHHHHHHHHHSC
T ss_pred -CCe-EEEEEcCCHHHHHHHHHHHHHHhcC
Confidence 244 4899999999999999999998764
No 17
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.94 E-value=1.9e-09 Score=99.82 Aligned_cols=96 Identities=24% Similarity=0.437 Sum_probs=80.3
Q ss_pred CccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCCC
Q psy3833 978 VPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADG 1057 (1087)
Q Consensus 978 ~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~ 1057 (1087)
-+..++||.-- ..|.+|+.||++++..|+|||++.+. ..|.-.|+|.+|+|.|+-+ .+++|+++|..| +
T Consensus 7 ~~~~~G~L~K~-----~~k~Wk~RwfvL~~~~L~yyk~~~~~--~~~~~~i~l~~~~v~~~~~-~~~~~~F~i~~~---~ 75 (107)
T 2cof_A 7 GLETSSYLNVL-----VNSQWKSRWCSVRDNHLHFYQDRNRS--KVAQQPLSLVGCEVVPDPS-PDHLYSFRILHK---G 75 (107)
T ss_dssp CCTTCCEEEEE-----ETTEEEEEEEEECSSCEEEECSSTTC--SEEEEEECTTTCEEECCCB-TTBSCEEEEEET---T
T ss_pred CCcEeEEEEEe-----cCCCcceEEEEEECCEEEEEeCCccc--CCCeeEEeccceEEEECCC-CCCCeEEEEEeC---C
Confidence 46788998753 78999999999999999999998762 3477789999999988765 567899999874 3
Q ss_pred CcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1058 MSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1058 ~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
..-.+|.|+|+++..+||.|.+-|+..
T Consensus 76 ~r~~~l~A~s~~e~~~Wi~al~~~~~~ 102 (107)
T 2cof_A 76 EELAKLEAKSSEEMGHWLGLLLSESGS 102 (107)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHSSC
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHcC
Confidence 455899999999999999999987654
No 18
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=98.92 E-value=1.7e-09 Score=103.20 Aligned_cols=106 Identities=16% Similarity=0.342 Sum_probs=82.4
Q ss_pred CccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCcee---ccc-ccccCceeEEEEEec
Q psy3833 978 VPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEV---TPD-VNLSQGKFIIKLEVP 1053 (1087)
Q Consensus 978 ~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev---~pd-v~~~~~k~~ikl~~p 1053 (1087)
-+...+||....+ .-.+|.+|+.|||+++..|+|||++++....+|.-.|+|.+|.+ .|. -...+++||++|..+
T Consensus 4 ~v~~~G~L~K~~~-~~~~~~WkrRwfvL~~~~L~yyk~~~d~~~~~p~g~I~L~~~~~~~v~~~~~~~~~~~~~F~i~~~ 82 (134)
T 2y7b_A 4 SVEERGFLTIFED-VSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIEPANREFCARRNTFELITV 82 (134)
T ss_dssp CCCEEEEEEEEEE-ETTEEEEEEEEEEEETTEEEEESSHHHHTTSCCSEEEEGGGBCSSSCEECCTTTCCCTTEEEEEEE
T ss_pred CceEEeeEEEEcC-CCCCCCcEEEEEEEECCEEEEECCCCcccccCceEEEEhhhCccccccccchhhccCCCEEEEEec
Confidence 3667899876522 23579999999999999999999988765578999999999984 332 123567899999874
Q ss_pred CCCC----------------CcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1054 AADG----------------MSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1054 ~~~~----------------~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
.|.. +...+|.|+|+++..+||.|.+-|+..
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~~ 129 (134)
T 2y7b_A 83 RPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLVD 129 (134)
T ss_dssp EECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 3321 135899999999999999999988753
No 19
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.86 E-value=5.7e-09 Score=98.82 Aligned_cols=104 Identities=16% Similarity=0.289 Sum_probs=83.4
Q ss_pred cccccceecc-----cccchhcccceeEEEEeceeeeeecChhhhcCC---CCceeecCCCceecccccccCceeEEEEE
Q psy3833 980 ELYDYLRCLK-----PKRFTMKAYKRLWVTCRELQLRFYKSREDAQHS---SPINEFSLRGCEVTPDVNLSQGKFIIKLE 1051 (1087)
Q Consensus 980 ~l~~~lk~~~-----~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~---~~~~~~~l~gcev~pdv~~~~~k~~ikl~ 1051 (1087)
..++||.--. -||...|.+|++|||+++..|+|||++.+...+ .+...|+|.+|.+.+..+-.+++||++|.
T Consensus 9 ~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~r~~~F~i~ 88 (123)
T 1wjm_A 9 QMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHVFKLG 88 (123)
T ss_dssp CEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEEECTTCSSCSSEEEEE
T ss_pred EEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEEcccccccCcccCCCceEEccCcEEeecccccCCCCEEEEE
Confidence 4668885421 245568999999999999999999998886432 24557899999888877778899999997
Q ss_pred ecCCCCCcceEEeccCHHHHHHHHHHhhhhhcccC
Q psy3833 1052 VPAADGMSEMFLRCENEEQYASWMAACRLQLTENN 1086 (1087)
Q Consensus 1052 ~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~~~~ 1086 (1087)
.+. ..+.+|.|+||++-.+||.|.+-|+....
T Consensus 89 ~~~---~~~~~f~A~s~~e~~~Wi~ai~~~~~~~~ 120 (123)
T 1wjm_A 89 LQD---GKEYLFQAKDEAEMSSWLRVVNAAIASGP 120 (123)
T ss_dssp CSS---SCEEEEECSSHHHHHHHHHHHHHHHHHCC
T ss_pred EcC---CcEEEEECCCHHHHHHHHHHHHHHHhccC
Confidence 653 36889999999999999999999887643
No 20
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=98.85 E-value=7.4e-09 Score=97.15 Aligned_cols=98 Identities=20% Similarity=0.358 Sum_probs=80.7
Q ss_pred ccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccc--cCceeEEEEEecCCC
Q psy3833 979 PELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNL--SQGKFIIKLEVPAAD 1056 (1087)
Q Consensus 979 p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~--~~~k~~ikl~~p~~~ 1056 (1087)
+..++||.--.++. +|.+|+.||++++..|+|||++.+. .|.-.|+|.+|.|.+.-+. .+++|||.|.-|
T Consensus 11 ~~~~G~L~K~~~~~--~~~WkkR~fvL~~~~L~yy~~~~~~---~~~g~i~l~~~~v~~~~~~~~~~~~~~f~i~~~--- 82 (123)
T 1upq_A 11 VHIRGWLHKQDSSG--LRLWKRRWFVLSGHCLFYYKDSREE---SVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHP--- 82 (123)
T ss_dssp EEEEEEEEEECSSS--SCCEEEEEEEEETTEEEEESSTTCC---SCCEEEEGGGCEEEECCSSCTTSSSSEEEEECT---
T ss_pred ceEEEEEEeeCCCC--CCCceeEEEEEeCCEEEEECCCCCc---ccceEEECCCCEEEECCCCccCCCcEEEEEECC---
Confidence 45789998654433 5899999999999999999997764 4888999999999887643 457899998654
Q ss_pred CCcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1057 GMSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1057 ~~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
+....+|.|+++++..+||.|.+-|+..
T Consensus 83 ~~r~~~l~a~s~~e~~~Wi~al~~a~~~ 110 (123)
T 1upq_A 83 GMRTYVLAADTLEDLRGWLRALGRASRA 110 (123)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHC-
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 3467999999999999999999998864
No 21
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.83 E-value=1.5e-08 Score=93.82 Aligned_cols=102 Identities=21% Similarity=0.371 Sum_probs=82.5
Q ss_pred CccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccc--cccCceeEEEEEecCC
Q psy3833 978 VPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDV--NLSQGKFIIKLEVPAA 1055 (1087)
Q Consensus 978 ~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv--~~~~~k~~ikl~~p~~ 1055 (1087)
.+..++||.--.. ..|.+|+.||++++..|+|||++++. .|.-.|+|++|.|..-. .-..++|+++|..|..
T Consensus 7 ~~~~~G~L~K~g~---~~~~Wk~R~fvL~~~~L~yy~~~~~~---~~~g~i~L~~~~v~~~~~~~~~~~~~~f~i~~~~~ 80 (118)
T 1v89_A 7 GPIKMGWLKKQRS---IVKNWQQRYFVLRAQQLYYYKDEEDT---KPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASW 80 (118)
T ss_dssp CEEEEEEEEEECS---SSSCEEEEEEEEETTEEEEESSSSCC---SCSEEECSTTEEEEEECCCSSCCCCCEEEEEESCC
T ss_pred CCcEEEEEEecCC---CCCCccEEEEEEECCEEEEEeCCCCC---CceEEEECCCCEEEEcCcCcccCCcceEEEECCcc
Confidence 4667899875422 47899999999999999999998763 48889999999986433 2356789999988753
Q ss_pred ----CCCcceEEeccCHHHHHHHHHHhhhhhccc
Q psy3833 1056 ----DGMSEMFLRCENEEQYASWMAACRLQLTEN 1085 (1087)
Q Consensus 1056 ----~~~~e~~l~~~~e~qya~wmaacrl~~~~~ 1085 (1087)
......+|.|+++++..+||.|.+-|+..+
T Consensus 81 ~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~~ 114 (118)
T 1v89_A 81 DQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSG 114 (118)
T ss_dssp SSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHCC
T ss_pred ccccCCCcEEEEECCCHHHHHHHHHHHHHHHccC
Confidence 256779999999999999999999998765
No 22
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=98.83 E-value=1.4e-08 Score=95.95 Aligned_cols=99 Identities=16% Similarity=0.269 Sum_probs=79.0
Q ss_pred CccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceeccc--ccccCceeEEEEEecCC
Q psy3833 978 VPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPD--VNLSQGKFIIKLEVPAA 1055 (1087)
Q Consensus 978 ~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pd--v~~~~~k~~ikl~~p~~ 1055 (1087)
....++||.--.++ .+|.+|+.||++++..|+|||++++. +|...|+|.+|.|... .+-.+++||+.|..|
T Consensus 20 ~~~~~G~L~K~~~~--~~~~Wk~R~fvL~~~~L~yy~~~~~~---~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~-- 92 (128)
T 2dkp_A 20 PVVRRGWLYKQDST--GMKLWKKRWFVLSDLCLFYYRDEKEE---GILGSILLPSFQIALLTSEDHINRKYAFKAAHP-- 92 (128)
T ss_dssp CCCEEEEEEEECCS--SSCCEEEEEEEEETTEEEEESSTTCC---SEEEEECGGGSEEEECCGGGCCSSCSEEEEECS--
T ss_pred CcEEEEEEEEeCCC--CCCCceeEEEEEeCCEEEEECCCCCc---ccceEEEcCceEEEEcCCcccCCCCeEEEEEcC--
Confidence 34578999543332 47899999999999999999997654 4788999999998654 344578899998765
Q ss_pred CCCcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1056 DGMSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1056 ~~~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
+...++|.|++|++..+||.|.+-|+..
T Consensus 93 -~~r~~~l~a~s~~e~~~Wi~al~~a~~~ 120 (128)
T 2dkp_A 93 -NMRTYYFCTDTGKEMELWMKAMLDAALV 120 (128)
T ss_dssp -SSCCEEEECSSHHHHHHHHHHHHHHHSC
T ss_pred -CCCEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 2467999999999999999999988764
No 23
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=98.83 E-value=1.1e-08 Score=96.05 Aligned_cols=102 Identities=16% Similarity=0.271 Sum_probs=81.6
Q ss_pred CccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCC-
Q psy3833 978 VPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAAD- 1056 (1087)
Q Consensus 978 ~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~- 1056 (1087)
-|..++||.--..+ +|.+|+.||++++..|+|||++++ .+|.-.|+|.+|.|.+. .-.+++||+.|..|...
T Consensus 4 ~~~~~G~L~K~g~~---~~~Wk~R~fvL~~~~L~yy~~~~~---~~~~g~i~L~~~~v~~~-~~~~~~~~f~i~~~~~~~ 76 (127)
T 1fgy_A 4 NPDREGWLLKLGGR---VKTWKRRWFILTDNCLYYFEYTTD---KEPRGIIPLENLSIREV-LDPRKPNCFELYNPSHKG 76 (127)
T ss_dssp SCSEEEEEEEECSS---SCCEEEEEEEEETTEEEEESSTTC---SSCSEEEECTTCEEEEE-CCSSCSSEEEEECSSSTT
T ss_pred CCceEeEEEEECCC---CCCeEEEEEEEECCEEEEeCCCCC---CCcceEEECCceEEEEc-cCCCCCceEEEecCCccc
Confidence 46778898544222 689999999999999999998765 34888999999988753 33578899999876532
Q ss_pred -----------------CCcceEEeccCHHHHHHHHHHhhhhhcccC
Q psy3833 1057 -----------------GMSEMFLRCENEEQYASWMAACRLQLTENN 1086 (1087)
Q Consensus 1057 -----------------~~~e~~l~~~~e~qya~wmaacrl~~~~~~ 1086 (1087)
.....+|.|+++++..+||.|.+-|+..+.
T Consensus 77 ~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~ 123 (127)
T 1fgy_A 77 QVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDP 123 (127)
T ss_dssp CCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHHCT
T ss_pred cccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhccCC
Confidence 235789999999999999999999987653
No 24
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.81 E-value=1.6e-08 Score=98.70 Aligned_cols=102 Identities=21% Similarity=0.303 Sum_probs=84.3
Q ss_pred CCccccccceeccccc---chhcccceeEEEEece-----eeeeecChhhhcCCCCceeecCCCceecccccccCceeEE
Q psy3833 977 HVPELYDYLRCLKPKR---FTMKAYKRLWVTCREL-----QLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFII 1048 (1087)
Q Consensus 977 ~~p~l~~~lk~~~~~~---~~lk~~k~~w~~~~~~-----~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~i 1048 (1087)
..+..++||.--.++. ..+|.+|+.||++++. .|.|||++.+. .+|.-.|+|.+|.+++.-+ .+++||+
T Consensus 16 ~~~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~--~~~~g~I~L~~~~~~~~~~-~~~~~~F 92 (150)
T 1wg7_A 16 GGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKIS--KEPKGSIFLDSCMGVVQNN-KVRRFAF 92 (150)
T ss_dssp CCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCS--SCCSEEECTTTCCEECCCC-SSCTTEE
T ss_pred CCeeEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCCC--CCcCcEEecccCEEEecCC-CCCceEE
Confidence 3467889998766554 5789999999999998 99999997632 3588999999999997533 6788999
Q ss_pred EEEecCCCCCcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1049 KLEVPAADGMSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1049 kl~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
.|..|. ....+|.|+++++..+||.|.+-|+..
T Consensus 93 ~i~~~~---~r~~~l~A~s~~e~~~Wi~al~~ai~~ 125 (150)
T 1wg7_A 93 ELKMQD---KSSYLLAADSEVEMEEWITILNKILQL 125 (150)
T ss_dssp EEECSS---SCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEeCC---CcEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 988763 368999999999999999999988753
No 25
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=2.1e-08 Score=93.92 Aligned_cols=96 Identities=19% Similarity=0.303 Sum_probs=76.9
Q ss_pred cccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecc--cccccCceeEEEEEecCCCC
Q psy3833 980 ELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTP--DVNLSQGKFIIKLEVPAADG 1057 (1087)
Q Consensus 980 ~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~p--dv~~~~~k~~ikl~~p~~~~ 1057 (1087)
..++||.--.++ .+|.+|+.||++++..|+|||++++. +|...|+|.+|.|.+ ..+-.+++|++.|..+ +
T Consensus 23 ~~~G~L~K~~~~--~~~~Wk~R~fvL~~~~L~yy~~~~~~---~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~---~ 94 (122)
T 2yry_A 23 TKAGWLFKQASS--GVKQWNKRWFVLVDRCLFYYKDEKEE---SILGSIPLLSFRVAAVQPSDNISRKHTFKAEHA---G 94 (122)
T ss_dssp EEEEEEEEECCS--SSCCEEEEEEEEETTEEEEESSTTCC---SCCEEEESTTCCCEECCTTCSCSSSSEEEEECS---S
T ss_pred cEEEEEEEECCC--CCCCcEEEEEEEeCCEEEEECCCCCC---CcccEEEcCCCEEEEcCccccCCcccEEEEecC---C
Confidence 477999754333 36899999999999999999997764 488899999998653 2344567899988543 3
Q ss_pred CcceEEeccCHHHHHHHHHHhhhhhc
Q psy3833 1058 MSEMFLRCENEEQYASWMAACRLQLT 1083 (1087)
Q Consensus 1058 ~~e~~l~~~~e~qya~wmaacrl~~~ 1083 (1087)
....+|.|+||++..+||.|.+-|+.
T Consensus 95 ~r~~~l~a~s~~e~~~Wi~al~~a~~ 120 (122)
T 2yry_A 95 VRTYFFSAESPEEQEAWIQAMGEAAR 120 (122)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 56799999999999999999998875
No 26
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=98.79 E-value=1.1e-08 Score=93.25 Aligned_cols=87 Identities=15% Similarity=0.352 Sum_probs=71.7
Q ss_pred cchhcccceeEEEEeceeeeeecChhhhcC---CCCceeecCCCceecccccccCceeEEEEEecCCCCCcceEEeccCH
Q psy3833 992 RFTMKAYKRLWVTCRELQLRFYKSREDAQH---SSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENE 1068 (1087)
Q Consensus 992 ~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~---~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e 1068 (1087)
+-..|.+|+.|||+++..|+|||++.+... -.|...|+|.+|.+.+..+-.+++|+++|..+ ...+.+|.|+|+
T Consensus 17 ~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~F~i~~~---~~~~~~~~A~s~ 93 (106)
T 1btn_A 17 KASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRLS---DGNEYLFQAKDD 93 (106)
T ss_dssp BCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEECSSCCSSSSEEEEECT---TSCEEEEECSSH
T ss_pred cCCCCChhEEEEEEECCEEEEEeCCcccccCCCCCCcceEECCCCEEEEcccccCCccEEEEEec---CCCEEEEECCCH
Confidence 367899999999999999999999886421 23666899999987766667788999998753 346899999999
Q ss_pred HHHHHHHHHhhhh
Q psy3833 1069 EQYASWMAACRLQ 1081 (1087)
Q Consensus 1069 ~qya~wmaacrl~ 1081 (1087)
++..+||.|.+-|
T Consensus 94 ~e~~~Wi~ai~~A 106 (106)
T 1btn_A 94 EEMNTWIQAISSA 106 (106)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998754
No 27
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=98.79 E-value=1.1e-08 Score=96.76 Aligned_cols=110 Identities=18% Similarity=0.307 Sum_probs=81.2
Q ss_pred CcccccCCCCCCCCccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCc
Q psy3833 965 GSHISLASPDIMHVPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQG 1044 (1087)
Q Consensus 965 g~~~~~~~~~~~~~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~ 1044 (1087)
|.+..++.+.....+...+||.--.+ ..|.+|+.||++++..|+|||++.+. .|.-.|+|.+|.++....-.++
T Consensus 4 g~~~~~~~~~~~~~~~~~G~L~K~g~---~~~~Wk~R~fvL~~~~L~yy~~~~~~---~~~g~i~L~~~~~v~~~~~~~~ 77 (126)
T 1fao_A 4 GRTEDDLVPTAPSLGTKEGYLTKQGG---LVKTWKTRWFTLHRNELKYFKDQMSP---EPIRILDLTECSAVQFDYSQER 77 (126)
T ss_dssp -----------CCTTCEEEEEEEECS---SSCCEEEEEEEEETTEEEEESSTTCS---SCSEEEEGGGCCEEEEECSSSS
T ss_pred CcCccccccCCCCCccEEEEEEEcCC---CCCCcccEEEEEECCEEEEeCCCCCC---CceeEEEccceEEEEecccCCC
Confidence 34444566666677888999975322 57889999999999999999997764 4888999999995544455677
Q ss_pred eeEEEEEecCCCCCcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1045 KFIIKLEVPAADGMSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1045 k~~ikl~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
+||+.|.-| ....+|.|+++++..+||.|.+-|+..
T Consensus 78 ~~~F~i~~~----~r~~~l~a~s~~e~~~Wi~al~~~i~~ 113 (126)
T 1fao_A 78 VNCFCLVFP----FRTFYLCAKTGVEADEWIKILRWKLSQ 113 (126)
T ss_dssp SSEEEEEET----TEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeC----CcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 789888754 457999999999999999999988764
No 28
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=98.78 E-value=7.9e-08 Score=103.14 Aligned_cols=103 Identities=15% Similarity=0.240 Sum_probs=83.7
Q ss_pred CCccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccc-----cCceeEEEEE
Q psy3833 977 HVPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNL-----SQGKFIIKLE 1051 (1087)
Q Consensus 977 ~~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~-----~~~k~~ikl~ 1051 (1087)
..|++.+||..-..+ .|.+|+.|||+++..|+|||++.+......|...+|.+|.|....+. +..+||+.|.
T Consensus 166 ~~p~~~G~L~k~~~~---~k~WkkR~fvL~~~~L~yyk~~~~~~~~~~i~l~~l~~~~v~~~~~~~~~~~~~~~~~F~i~ 242 (291)
T 3tca_A 166 IVPELEGALYLKEDG---KKSWKRRYFLLRASGIYYVPKGKTKTSRDLACFIQFENVNIYYGIQCKMKYKAPTDHCFVLK 242 (291)
T ss_dssp CCCCCEEEEEEECTT---SSCEEEEEEEECSSEEEECCTTCCSSTTTCEEEEEGGGCEEEEECSHHHHHCCSSSCEEEEE
T ss_pred CCCceEEEEEEeCCC---CCCceEEEEEEeCCEEEEEecCccccccCceeeccceeEEEEecCccccccCCCCCeEEEEE
Confidence 479999999764333 58999999999999999999988776566777788999988776654 3467999998
Q ss_pred ecCCC--CCcceEEeccCHHHHHHHHHHhhhhh
Q psy3833 1052 VPAAD--GMSEMFLRCENEEQYASWMAACRLQL 1082 (1087)
Q Consensus 1052 ~p~~~--~~~e~~l~~~~e~qya~wmaacrl~~ 1082 (1087)
.|... ...-.||.|+||+...+||+|.|+|.
T Consensus 243 ~~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak 275 (291)
T 3tca_A 243 HPQIQKESQYIKYLCCDDARTLSQWVMGIRIAK 275 (291)
T ss_dssp CTTCCSCCTTSEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence 77632 23447899999999999999999995
No 29
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=1.6e-08 Score=95.49 Aligned_cols=97 Identities=11% Similarity=0.296 Sum_probs=78.5
Q ss_pred CccccccceecccccchhcccceeEEEEe--ceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCC
Q psy3833 978 VPELYDYLRCLKPKRFTMKAYKRLWVTCR--ELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAA 1055 (1087)
Q Consensus 978 ~p~l~~~lk~~~~~~~~lk~~k~~w~~~~--~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~ 1055 (1087)
.|.+++||.=-. -.+|.+|+.|||++ +..|+|||++++.. ..|.-.|+|.+|.|.++ ..++|++.|..|.
T Consensus 7 ~~~~~G~L~K~~---~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~-~~~~g~I~L~~~~v~~~---~~~~~~F~i~~~~- 78 (120)
T 2d9x_A 7 GENVYGYLMKYT---NLVTGWQYRFFVLNNEAGLLEYFVNEQSRN-QKPRGTLQLAGAVISPS---DEDSHTFTVNAAS- 78 (120)
T ss_dssp CCCCEEEEEEEE---ETTTEEEEEEEEECTTTCEEEEESSGGGSS-SCCSEEEECTTCCEECC---SSSSSCEEECCSS-
T ss_pred CCcEEEEEEecC---CCCCCceEEEEEEECCCCEEEEEecCcccC-CCccceEEcceEEEEec---CCCCCEEEEEcCC-
Confidence 467889985321 26799999999999 58999999988764 46888999999998885 3566777776543
Q ss_pred CCCcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1056 DGMSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1056 ~~~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
....+|+|+++++..+||.|.+-|+..
T Consensus 79 --~r~~~l~a~s~~e~~~Wi~al~~~~~~ 105 (120)
T 2d9x_A 79 --GEQYKLRATDAKERQHWVSRLQICTQH 105 (120)
T ss_dssp --SCCEEECCSSHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 367999999999999999999988764
No 30
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=1.8e-08 Score=95.22 Aligned_cols=98 Identities=17% Similarity=0.348 Sum_probs=79.5
Q ss_pred CCccccccceecccccchhcccceeEEEEece--eeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecC
Q psy3833 977 HVPELYDYLRCLKPKRFTMKAYKRLWVTCREL--QLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPA 1054 (1087)
Q Consensus 977 ~~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~--~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~ 1054 (1087)
+.|.+++||.--.+ +-.+|.+|+.|||+++. .|+|||++.+. +|.-.|+|.+|.++.+. ..++++++|..|
T Consensus 6 ~~~~~~G~L~K~g~-~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~~---~~~g~I~L~~~~~~~~~--~~~~~~F~i~~~- 78 (119)
T 2dhk_A 6 SGKKLCGYLSKFGG-KGPIRGWKSRWFFYDERKCQLYYSRTAQDA---NPLDSIDLSSAVFDCKA--DAEEGIFEIKTP- 78 (119)
T ss_dssp SCCCCEEEEEECSC-SSSSCCCEEEEEEEETTTTEEEEESSTTCC---SCSEEEEGGGCEEEECT--TGGGCEEEEECS-
T ss_pred CCCcEEEEEEecCC-CCCCCCceeEEEEEECCccEEEEECCCCCc---ccccEEECCCCEEEecC--CCCCCEEEEEeC-
Confidence 45778999974333 23479999999999999 99999998764 48889999999998763 456777777655
Q ss_pred CCCCcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1055 ADGMSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1055 ~~~~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
....+|.|+|+++..+||.|.+-|+.+
T Consensus 79 ---~r~~~l~a~s~~e~~~Wi~al~~~~~~ 105 (119)
T 2dhk_A 79 ---SRVITLKAATKQAMLYWLQQLQMKRWE 105 (119)
T ss_dssp ---SCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ---CcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999988754
No 31
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.76 E-value=2.8e-08 Score=92.21 Aligned_cols=99 Identities=20% Similarity=0.357 Sum_probs=80.1
Q ss_pred CccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecc-cccccCceeEEEEEecCCC
Q psy3833 978 VPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTP-DVNLSQGKFIIKLEVPAAD 1056 (1087)
Q Consensus 978 ~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~p-dv~~~~~k~~ikl~~p~~~ 1056 (1087)
-+..++||.-- .-.+|.+|+.||++++..|+|||++++ .+|...|+|++|.++- ..+-.+++||++|.-+.
T Consensus 4 ~~~~~G~L~K~---g~~~~~Wk~R~fvL~~~~L~yy~~~~~---~~~~g~i~L~~~~~~~~~~~~~~~~~~F~i~~~~-- 75 (113)
T 1pls_A 4 KRIREGYLVKK---GSVFNTWKPMWVVLLEDGIEFYKKKSD---NSPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTK-- 75 (113)
T ss_dssp CCSEEEEEEEE---SSSSSCCEEEEEEEETTEEEEESSTTC---SSCSEEEESSSCCEESSCCSSCCSSSEEEEEETT--
T ss_pred CCcEEEEEEEe---CCCCCCceEEEEEEECCEEEEEeCCCC---CCcceEEEcCCCEEEEecCCCCCCccEEEEEcCC--
Confidence 35677888632 225689999999999999999999764 3488899999999873 55667788999987542
Q ss_pred CCcceEEeccCHHHHHHHHHHhhhhhccc
Q psy3833 1057 GMSEMFLRCENEEQYASWMAACRLQLTEN 1085 (1087)
Q Consensus 1057 ~~~e~~l~~~~e~qya~wmaacrl~~~~~ 1085 (1087)
....+|+|+|+++..+||.|.+-|+...
T Consensus 76 -~r~~~l~a~s~~e~~~Wi~ai~~~~~~~ 103 (113)
T 1pls_A 76 -QQDHFFQAAFLEERDAWVRDINKAIKCI 103 (113)
T ss_dssp -TEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEECCCHHHHHHHHHHHHHHHhcc
Confidence 4689999999999999999999988654
No 32
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=98.75 E-value=1.9e-08 Score=91.89 Aligned_cols=85 Identities=15% Similarity=0.371 Sum_probs=68.8
Q ss_pred hhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCCCCcceEEeccCHHHHHH
Q psy3833 994 TMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYAS 1073 (1087)
Q Consensus 994 ~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~qya~ 1073 (1087)
.+|++|+.||++++..|+|||++.+.. ..|.-.|+|.+|.|.++-+ +++++.|..| +....+|+|+|+++..+
T Consensus 11 ~~k~Wk~R~fvL~~~~L~Yy~~~~~~~-~~~~g~i~L~~~~v~~~~~---~~~~F~i~~~---~~r~~~l~a~s~~e~~~ 83 (103)
T 3rcp_A 11 YLTGWQPRWFVLDNGILSYYDSQDDVC-KGSKGSIKMAVCEIKVHSA---DNTRMELIIP---GEQHFYMKAVNAAERQR 83 (103)
T ss_dssp TTTCEEEEEEEEETTEEEEESSCC----CCCSCEEEGGGCEEECCTT---CSSEEEEEET---TTEEEEEECSSHHHHHH
T ss_pred CCCCeeceEEEEECCEEEEEecCCccc-CCcccEEEeeeeEEEEcCC---CCceEEEEeC---CCCEEEEECCCHHHHHH
Confidence 368999999999999999999988754 4688899999999987533 4566666543 55689999999999999
Q ss_pred HHHHhhhhhccc
Q psy3833 1074 WMAACRLQLTEN 1085 (1087)
Q Consensus 1074 wmaacrl~~~~~ 1085 (1087)
||.|.+-|+.+.
T Consensus 84 Wi~al~~a~~~~ 95 (103)
T 3rcp_A 84 WLVALGSSKASL 95 (103)
T ss_dssp HHHHHHTTSCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999998754
No 33
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=4.2e-08 Score=91.01 Aligned_cols=99 Identities=18% Similarity=0.277 Sum_probs=78.2
Q ss_pred ccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceeccc--ccccCceeEEEEEecCCC
Q psy3833 979 PELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPD--VNLSQGKFIIKLEVPAAD 1056 (1087)
Q Consensus 979 p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pd--v~~~~~k~~ikl~~p~~~ 1056 (1087)
...++||.--.++ .+|.+|+.||++++..|+|||++.+. .|...|+|.+|.|.+- .+-.+++|++.|..+
T Consensus 11 ~~~~G~L~K~~~~--~~~~Wk~R~fvL~~~~L~yy~~~~~~---~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~--- 82 (117)
T 2d9y_A 11 VTKAGWLFKQASS--GVKQWNKRWFVLVDRCLFYYKDEKEE---SILGSIPLLSFRVAAVQPSDNISRKHTFKAEHA--- 82 (117)
T ss_dssp CCEEEEEEEECTT--SSSCEEEEEEEEETTEEEEESSTTCC---SCCEEEECSSCEEEECCTTTTCCCSSEEEEECS---
T ss_pred eeEEEEEEEeCCC--CCCCceEEEEEECCCEEEEECCCCCC---CcCCEEEeCCeEEEEcCccccCCCccEEEEEcC---
Confidence 4478999644333 46899999999999999999997654 4888999999987532 234567888888543
Q ss_pred CCcceEEeccCHHHHHHHHHHhhhhhccc
Q psy3833 1057 GMSEMFLRCENEEQYASWMAACRLQLTEN 1085 (1087)
Q Consensus 1057 ~~~e~~l~~~~e~qya~wmaacrl~~~~~ 1085 (1087)
+...++|.|+++++..+||.|.+-|+...
T Consensus 83 ~~r~~~l~a~s~~e~~~Wi~al~~~~~~~ 111 (117)
T 2d9y_A 83 GVRTYFFSAESPEEQEAWIQAMGEAARVQ 111 (117)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCCT
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHHHhhc
Confidence 34679999999999999999999998643
No 34
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=98.73 E-value=3.3e-08 Score=95.53 Aligned_cols=103 Identities=20% Similarity=0.347 Sum_probs=80.0
Q ss_pred Cccccccceec----ccccchhcccceeEEEEeceeeeeecChhhh--------cCCCCceeecCCCceecccccccCce
Q psy3833 978 VPELYDYLRCL----KPKRFTMKAYKRLWVTCRELQLRFYKSREDA--------QHSSPINEFSLRGCEVTPDVNLSQGK 1045 (1087)
Q Consensus 978 ~p~l~~~lk~~----~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~--------~~~~~~~~~~l~gcev~pdv~~~~~k 1045 (1087)
.+..++||.-- ..+++. |.+|++|||+++..|+|||++.+. ...+|...|+|+||.|...-+-.++|
T Consensus 11 ~~~k~G~L~kk~~~~~G~~~~-k~Wk~rwfvL~~~~L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~~~v~~~~~~~kr~ 89 (129)
T 2p0d_A 11 EVEKSGLLNMTKIAQGGRKLR-KNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHLSSRR 89 (129)
T ss_dssp SEEEEEEEEEEEEEETTEECC-CCCEEEEEEEESSEEEEESCC--------------CCSEEEECTTCEEEECTTSCSSS
T ss_pred ceeEEEEEEEeeeccCCCcCC-CCceEEEEEEeCCEEEEEcCcccccccccccccCCCCccEEEeCCcEEEECCCCCCCC
Confidence 45577998642 244554 999999999999999999998533 12478999999999998765667788
Q ss_pred eEEEEEecCCCCCcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1046 FIIKLEVPAADGMSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1046 ~~ikl~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
++++|..| ...+.+|.++|+++-.+|+.|.+-|+..
T Consensus 90 ~~F~l~t~---~~~~yl~qA~s~~e~~~Wi~aI~~~i~~ 125 (129)
T 2p0d_A 90 NVLHIRTI---PGHEFLLQSDHETELRAWHRALRTVIER 125 (129)
T ss_dssp SEEEEECT---TSCEEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEcC---CCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 99998743 3468899999999999999999988764
No 35
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=98.72 E-value=3.4e-08 Score=90.54 Aligned_cols=97 Identities=21% Similarity=0.287 Sum_probs=75.1
Q ss_pred CccccccceecccccchhcccceeEEEEece--eeeeecChhhhcCCCCceeecCCCceecccccc-----cCceeEEEE
Q psy3833 978 VPELYDYLRCLKPKRFTMKAYKRLWVTCREL--QLRFYKSREDAQHSSPINEFSLRGCEVTPDVNL-----SQGKFIIKL 1050 (1087)
Q Consensus 978 ~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~--~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~-----~~~k~~ikl 1050 (1087)
-+..++||.-- .. ..|.+|+.||++++. .|+|||++.+ .+|...|+|++|.|.+-... .+++|++.|
T Consensus 6 ~~~~~G~L~K~-g~--~~~~Wk~R~fvL~~~~~~L~yyk~~~~---~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i 79 (109)
T 2i5f_A 6 VIIKQGCLLKQ-GH--RRKNWKVRKFILREDPAYLHYYDPAGA---EDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEI 79 (109)
T ss_dssp CEEEEEEEEEE-CT--TTCCEEEEEEEEETTTTEEEEECTTSC---SSCSEEEECTTCEEEEECC--------CCSEEEE
T ss_pred ceeEEEEEEEc-CC--CCCCceEEEEEEeCCCcEEEEECCCCC---CCccEEEECCCCEEEEccCCcccccCCCceEEEE
Confidence 45677888652 22 468999999999987 9999998754 34889999999988643332 347788888
Q ss_pred EecCCCCCcceEEeccCHHHHHHHHHHhhhhhc
Q psy3833 1051 EVPAADGMSEMFLRCENEEQYASWMAACRLQLT 1083 (1087)
Q Consensus 1051 ~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~ 1083 (1087)
..| +....+|.|+|+++..+||.|.+-|++
T Consensus 80 ~~~---~~~~~~l~a~s~~e~~~Wi~ai~~~~k 109 (109)
T 2i5f_A 80 ITA---DEVHYFLQAATPKERTEWIKAIQMASR 109 (109)
T ss_dssp ECT---TCCEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred EeC---CCCEEEEEcCCHHHHHHHHHHHHHHhC
Confidence 766 345699999999999999999998874
No 36
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=98.72 E-value=4.4e-08 Score=95.74 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=84.9
Q ss_pred ccccccee---c-ccccchhcccceeEEEEeceeeeeecChh------hhcCCCCceeecCCCceecccccccCceeEEE
Q psy3833 980 ELYDYLRC---L-KPKRFTMKAYKRLWVTCRELQLRFYKSRE------DAQHSSPINEFSLRGCEVTPDVNLSQGKFIIK 1049 (1087)
Q Consensus 980 ~l~~~lk~---~-~~~~~~lk~~k~~w~~~~~~~l~~~k~~~------~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ik 1049 (1087)
++++||+- . +.+|.+.|.+|+|||++++..|.||+.+. ..+..+|.-.++|.||.|. .++-+++++|+.
T Consensus 2 ~~~G~L~rk~llK~G~k~~~ksWkr~W~vL~g~~L~yf~~~~~~~~~~~~~~~~P~~~i~L~g~~V~-~~e~~~~~~~F~ 80 (126)
T 2dtc_A 2 TMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQ-LPDDPEHPDIFQ 80 (126)
T ss_dssp CEEEEEEEEEEEBTTBCCSSCCCEEEEEEEETTEEEEEEBSSSCCSSGGGBCSSCSEEEECTTCEEE-CCCCTTSTTEEE
T ss_pred ceeeeeeeeehhhcCCcccccCcccEEEEEeCCEEEEEcccccccccccccccCCCceEEeCCCEEE-ecCCCCCCCEEE
Confidence 45677762 3 36777899999999999999999999773 1223589999999999999 788888999999
Q ss_pred EEecCCCCCcceEEeccCHHHHHHHHHHhhhhhccc
Q psy3833 1050 LEVPAADGMSEMFLRCENEEQYASWMAACRLQLTEN 1085 (1087)
Q Consensus 1050 l~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~~~ 1085 (1087)
|.-|.. -++-.+.+++++.=..|+.|.+-|+..+
T Consensus 81 L~~~~~--G~~Y~fqA~s~~~~~~W~~ai~~a~~~~ 114 (126)
T 2dtc_A 81 LNNPDK--GNVYKFQTGSRFHAILWHKHLDDACKSS 114 (126)
T ss_dssp EECTTS--CSEEEEECSSHHHHHHHHHHHHHHHTSC
T ss_pred EeeCCC--CCEEEEeCCCHHHHHHHHHHHHHHHhcC
Confidence 985433 3789999999999999999999988654
No 37
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=98.68 E-value=4.5e-08 Score=89.05 Aligned_cols=99 Identities=13% Similarity=0.243 Sum_probs=77.2
Q ss_pred cccccceecccc-cchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccc---cccCceeEEEEEecCC
Q psy3833 980 ELYDYLRCLKPK-RFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDV---NLSQGKFIIKLEVPAA 1055 (1087)
Q Consensus 980 ~l~~~lk~~~~~-~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv---~~~~~k~~ikl~~p~~ 1055 (1087)
..++||.--.++ ++..|.+|+.||++++..|+|||++.+. .|...|+|.+|.|...- .-.+++|++.|..|
T Consensus 4 ~~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~---~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~i~~~-- 78 (108)
T 1u5d_A 4 IKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSK---QPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQ-- 78 (108)
T ss_dssp EEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTTCS---SCSEEEECTTCEEEECGGGCSSGGGGGEEEEECS--
T ss_pred cEEEEEEEcCCCCCccccCceeeEEEEeCCEEEEecCCCCC---CCCEEEEecceEEEeCCccccccCCcceEEEEcC--
Confidence 356777655443 3344999999999999999999997753 48889999999976532 23355688888754
Q ss_pred CCCcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1056 DGMSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1056 ~~~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
+....+|.|+++++..+||.|.+-|+..
T Consensus 79 -~~r~~~l~a~s~~e~~~Wi~ai~~~i~~ 106 (108)
T 1u5d_A 79 -DRRTYEFTATSPAEARDWVDQISFLLKD 106 (108)
T ss_dssp -SSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred -CCcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 3467999999999999999999988764
No 38
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=98.68 E-value=7.8e-08 Score=91.24 Aligned_cols=102 Identities=20% Similarity=0.275 Sum_probs=79.7
Q ss_pred CCCCCccccccceecccccchhcccceeEEEEece--eeeeecChhhhcCCCCceeecCCCceecccccc-----cCcee
Q psy3833 974 DIMHVPELYDYLRCLKPKRFTMKAYKRLWVTCREL--QLRFYKSREDAQHSSPINEFSLRGCEVTPDVNL-----SQGKF 1046 (1087)
Q Consensus 974 ~~~~~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~--~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~-----~~~k~ 1046 (1087)
+...-+..++||.-- .. ..|.+|+.||++++. .|+|||++.+ .+|.-.|+|.+|.|..-... .+++|
T Consensus 13 ~~~~~~~~~G~L~K~-g~--~~~~Wk~R~fvL~~~~~~L~yy~~~~~---~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~ 86 (129)
T 1x05_A 13 EFRGVIIKQGCLLKQ-GH--RRKNWKVRKFILREDPAYLHYYDPAGA---EDPLGAIHLRGCVVTSVESNSNGRKSEEEN 86 (129)
T ss_dssp TTCSEEEEEEEEEEC-CS--SCCCCEEEEEEEEETTTEEEEECSSCC---SSCSEEEECTTCEEEECCCCCCSSSCSSCS
T ss_pred cccCCceEEEEEEec-CC--CCCCCeeEEEEEeCCCCEEEEECCCCC---CcceeEEEccCCEEEEccCCccccccCCCe
Confidence 444556678998752 22 478999999999987 8999998754 34888999999988743332 34789
Q ss_pred EEEEEecCCCCCcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1047 IIKLEVPAADGMSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1047 ~ikl~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
|+.|..| +....+|.|+++++..+||.|.+-|+..
T Consensus 87 ~F~i~~~---~~~~~~l~a~s~~e~~~Wi~al~~~~~~ 121 (129)
T 1x05_A 87 LFEIITA---DEVHYFLQAATPKERTEWIKAIQMASRT 121 (129)
T ss_dssp EEEEECT---TCCCCEEECSSHHHHHHHHHHHHHHHTC
T ss_pred EEEEEcC---CCCEEEEECCCHHHHHHHHHHHHHHHHc
Confidence 9998866 3456899999999999999999988764
No 39
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=98.68 E-value=2.5e-08 Score=89.90 Aligned_cols=82 Identities=20% Similarity=0.387 Sum_probs=69.2
Q ss_pred hhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCCCCcceEEeccCHHHHHH
Q psy3833 994 TMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYAS 1073 (1087)
Q Consensus 994 ~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~qya~ 1073 (1087)
.+|++|+.||++++..|+||+++.+.. ..|+..++|.+|.++++- ..++++.+..| ....+|+|+||+...+
T Consensus 13 ~~k~WkkR~FvL~~~~L~Yy~~~~~~~-~~~~~~i~l~~~~~~~~~---~~~~~F~i~~~----~r~~~l~A~s~~e~~~ 84 (94)
T 2rsg_A 13 YIHGWQDRWVVLKNNALSYYKSEDETE-YGCRGSICLSKAVITPHD---FDECRFDISVN----DSVWYLRAQDPDHRQQ 84 (94)
T ss_dssp STTCEEEEEEEEETTEEEEESSTTGGG-TCCSEEEETTTCEEEECS---SCSSEEEEEET----TEEEEEECCSSCCTHH
T ss_pred CCCCceEEEEEEECCEEEEEEeccccc-ccceeeEecceeeeecCc---ccceeEEEEeC----CeEEEEECCCHHHHHH
Confidence 479999999999999999999988876 568899999999998873 45677776554 3568999999999999
Q ss_pred HHHHhhhhhc
Q psy3833 1074 WMAACRLQLT 1083 (1087)
Q Consensus 1074 wmaacrl~~~ 1083 (1087)
||.|.+-|.|
T Consensus 85 Wi~aLq~AkT 94 (94)
T 2rsg_A 85 WIDAIEQHKT 94 (94)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHhhcC
Confidence 9999887653
No 40
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=98.64 E-value=6.6e-08 Score=91.13 Aligned_cols=97 Identities=16% Similarity=0.221 Sum_probs=75.8
Q ss_pred cccceec-ccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceec--ccccccCceeEEEEEecCCCCC
Q psy3833 982 YDYLRCL-KPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVT--PDVNLSQGKFIIKLEVPAADGM 1058 (1087)
Q Consensus 982 ~~~lk~~-~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~--pdv~~~~~k~~ikl~~p~~~~~ 1058 (1087)
++||.-= -.+++..|.+|++|||+++..|+|||++++. +|...++|.|+++. -..+-.++++|++|..+. .
T Consensus 3 eG~L~kK~g~~~~~~k~Wk~rwfvL~~~~L~~yk~~~~~---~p~~~i~l~~~~~~~~~~~~~~~r~~~F~l~~~~---~ 76 (112)
T 3cxb_B 3 EGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDV---IPLLSVNMGGEQCGGCRRANTTDRPHAFQVILSD---R 76 (112)
T ss_dssp EEEEEECCSCCCSSCCCCEEEEEEEETTEEEEESSSSCC---SCSEEEETTC-CEEEEEECCCSSCTTEEEEEETT---S
T ss_pred eEEEEEeCCCCCCCCCCceEEEEEEECCEEEEECCCCCC---CccceEEecCCEEEeeeccCCCCCCeEEEEEcCC---C
Confidence 4566311 1345688999999999999999999997654 47888999987655 334556788999997653 4
Q ss_pred cceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1059 SEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1059 ~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
.+.+|.++||++-.+||.|.+-|+..
T Consensus 77 ~~y~f~A~s~ee~~~Wi~ai~~~~~~ 102 (112)
T 3cxb_B 77 PCLELSAESEAEMAEWMQHLCQAVSK 102 (112)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHhhc
Confidence 58999999999999999999988864
No 41
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=98.61 E-value=9.5e-08 Score=93.36 Aligned_cols=102 Identities=14% Similarity=0.266 Sum_probs=79.5
Q ss_pred Cccccccceecccc-cchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceeccccc---ccCceeEEEEEec
Q psy3833 978 VPELYDYLRCLKPK-RFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVN---LSQGKFIIKLEVP 1053 (1087)
Q Consensus 978 ~p~l~~~lk~~~~~-~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~---~~~~k~~ikl~~p 1053 (1087)
-+...+||.--.++ ++..|.+|+.||++++..|+|||++.+. .|.-.|+|.+|.|.+.-+ -.+++||++|..|
T Consensus 16 ~~~~~G~L~K~g~~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~---~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~I~~~ 92 (148)
T 1u5f_A 16 FVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDK---QQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAP 92 (148)
T ss_dssp SEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTTCS---SCSEEEECTTCEEEECTTSCSSTTGGGEEEEECT
T ss_pred CccEEEEEEEeCCCCCCcCCCceeEEEEEECCEEEEEcCCCCc---ccceEEEcCCcEEEECCCcccCCCCccEEEEECC
Confidence 35577998765443 2467999999999999999999997763 488899999999885332 3344589988765
Q ss_pred CCCCCcceEEeccCHHHHHHHHHHhhhhhccc
Q psy3833 1054 AADGMSEMFLRCENEEQYASWMAACRLQLTEN 1085 (1087)
Q Consensus 1054 ~~~~~~e~~l~~~~e~qya~wmaacrl~~~~~ 1085 (1087)
+....+|.|+++++..+||.|.+-|+...
T Consensus 93 ---~~r~~~l~a~s~~e~~~Wi~al~~~i~~~ 121 (148)
T 1u5f_A 93 ---DKRIYQFTAASPKDAEEWVQQLKFILQDL 121 (148)
T ss_dssp ---TSCEEEEECSSHHHHHHHHHHHHHHCC--
T ss_pred ---CCcEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 34578999999999999999999988653
No 42
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=98.61 E-value=4.6e-08 Score=92.88 Aligned_cols=104 Identities=10% Similarity=0.335 Sum_probs=80.6
Q ss_pred Cccccccce---ecc--cccchhcccceeEEEEeceeeeeecChhhhcC--CCCc---eeecCCCceecccccccCceeE
Q psy3833 978 VPELYDYLR---CLK--PKRFTMKAYKRLWVTCRELQLRFYKSREDAQH--SSPI---NEFSLRGCEVTPDVNLSQGKFI 1047 (1087)
Q Consensus 978 ~p~l~~~lk---~~~--~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~--~~~~---~~~~l~gcev~pdv~~~~~k~~ 1047 (1087)
....++||. ... -||...|.+|++||++++..|+|||++.+... +.++ ..|+|.+|.|.+.-+-.++||+
T Consensus 7 ~v~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~~L~~yk~~~~~~~~~~~~~~~~~~i~L~~~~v~~~~d~~kr~~~ 86 (122)
T 1dro_A 7 GEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDYTKKKHV 86 (122)
T ss_dssp SSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCCCEECCSSSSSTTE
T ss_pred ceEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEeCCcccccCCCcccCCCceEECCCCEEEeCCCCCCCCeE
Confidence 345678883 221 23446799999999999999999999887642 2222 4699999988777677788999
Q ss_pred EEEEecCCCCCcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1048 IKLEVPAADGMSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1048 ikl~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
++|..+ ...+.+|.|+||++-.+|+.|.+-|+..
T Consensus 87 F~l~t~---~~~~~lfqA~s~~e~~~Wi~ai~~~i~~ 120 (122)
T 1dro_A 87 LRVKLA---NGALFLLQAHDDTEMSQWVTSLKAQSDS 120 (122)
T ss_dssp EEEECS---SSCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred EEEEEc---CCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 999733 2368889999999999999999988753
No 43
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=98.60 E-value=1.1e-07 Score=88.26 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=77.4
Q ss_pred CCccccccceecccccchhcccceeEEEEe--ceeeeeecChhhhcCCCCceeecCCCceeccccc-------ccCceeE
Q psy3833 977 HVPELYDYLRCLKPKRFTMKAYKRLWVTCR--ELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVN-------LSQGKFI 1047 (1087)
Q Consensus 977 ~~p~l~~~lk~~~~~~~~lk~~k~~w~~~~--~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~-------~~~~k~~ 1047 (1087)
..+.+++||.--.. .+|.+|+.||+++ +..|+|||++.+. +|.-.|+|.+|.++-... -..++|+
T Consensus 6 ~~~~~~G~L~K~g~---~~~~Wk~R~fvL~~~~~~L~yy~~~~~~---~~~g~i~L~~~~~v~~~~~~~~~~~~~~~~~~ 79 (117)
T 1v5u_A 6 SGRSYEGILYKKGA---FMKPWKARWFVLDKTKHQLRYYDHRMDT---ECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAF 79 (117)
T ss_dssp CSSSEEEEEEECCC---SSSCCEEEEEEEETTTTEEEEESSSSCS---SCCCEEEGGGEEEEECCCCCTTSCSSSCTTTC
T ss_pred CCccEEEEEEecCC---CCCCceeeEEEEECCCCEEEEeecCCCC---ccceEEEccCcEEEeecCccccccccCCCCeE
Confidence 35678899875332 2799999999999 8899999997763 488899999998643221 1345577
Q ss_pred EEEEecCCCCCcceEEeccCHHHHHHHHHHhhhhhcccC
Q psy3833 1048 IKLEVPAADGMSEMFLRCENEEQYASWMAACRLQLTENN 1086 (1087)
Q Consensus 1048 ikl~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~~~~ 1086 (1087)
+.|.- .....+|.|+++++..+||.|.+-|+..+.
T Consensus 80 F~i~~----~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~ 114 (117)
T 1v5u_A 80 FDVKT----TRRVYNFCAQDVPSAQQWVDRIQSCLSSGP 114 (117)
T ss_dssp EEEEE----SSCEEEEECSSHHHHHHHHHHHHTTCCCCC
T ss_pred EEEEC----CCceEEEECCCHHHHHHHHHHHHHHhccCC
Confidence 77743 346799999999999999999999987764
No 44
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=98.60 E-value=1.2e-07 Score=91.37 Aligned_cols=100 Identities=16% Similarity=0.299 Sum_probs=76.7
Q ss_pred ccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccc----------cCceeEE
Q psy3833 979 PELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNL----------SQGKFII 1048 (1087)
Q Consensus 979 p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~----------~~~k~~i 1048 (1087)
|-.++||.= |.-.+|+||+-|||+++..|+|||++++....+|.-.|+|+||.|++...- .+.||.|
T Consensus 6 ~~k~G~L~K---k~~~~k~W~~rwfVL~~~~L~yyK~~~~~~d~~P~gsI~L~~c~v~~~~~~~~~~~~~~~~~~~~F~i 82 (120)
T 4a6h_A 6 EIKSGFLER---RSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTEHSRKNSTSSPNSTGSDAKFVL 82 (120)
T ss_dssp CSEEEEEEE---EETTTTEEEEEEEEECSSEEEEESSCCTTTCCSCSEEEEGGGEEEEEECCCCC---------CCEEEE
T ss_pred ccEEEEEEE---cCCCCCCCccEEEEEeCCEEEEEcCCCcCcCCCceEEEECCCCEEEEcccccccccccccCCCcEEEE
Confidence 667788763 222689999999999999999999987654466999999999999884322 3345655
Q ss_pred EEEecCCC---CCcceEEeccCHHHHHHHHHHhhhhhc
Q psy3833 1049 KLEVPAAD---GMSEMFLRCENEEQYASWMAACRLQLT 1083 (1087)
Q Consensus 1049 kl~~p~~~---~~~e~~l~~~~e~qya~wmaacrl~~~ 1083 (1087)
+ .+... +..+.+|+++++++..+||.|.|-++.
T Consensus 83 ~--~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~~ 118 (120)
T 4a6h_A 83 H--AKQNGIIRRGHNWVFKADSYESMMSWFDNLKILTS 118 (120)
T ss_dssp E--ESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred E--eCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 5 34331 246999999999999999999997754
No 45
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.58 E-value=1.1e-07 Score=88.74 Aligned_cols=94 Identities=13% Similarity=0.216 Sum_probs=73.5
Q ss_pred CccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCCC
Q psy3833 978 VPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADG 1057 (1087)
Q Consensus 978 ~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~ 1057 (1087)
.+..++||.- -.+...|.+|+.||++++..|+|||++++. .|.-.|+|.+|..+-.+. ++++.|.- .
T Consensus 7 ~~~~~G~L~K--~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~---~~~g~i~l~~~~~v~~~~----~~~F~i~~----~ 73 (115)
T 2cod_A 7 GKVKSGWLDK--LSPQGKRMFQKRWVKFDGLSISYYNNEKEM---YSKGIIPLSAISTVRVQG----DNKFEVVT----T 73 (115)
T ss_dssp CCCEEEEEEE--CCSSSSSCCEEEEEEECSSEEEEEESSCCS---SCCCEEETTTEEEEEEET----TTEEEEEE----S
T ss_pred CccEEEEEEE--cCCCCCCCCceEEEEEECCEEEEEcCCCCc---ccCCEEECCcceEEEeCC----CCEEEEEe----C
Confidence 3557799873 223357899999999999999999998764 377899999996444333 57777763 2
Q ss_pred CcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1058 MSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1058 ~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
....+|+|+++++..+||.|.+-|+..
T Consensus 74 ~r~~~l~a~s~~e~~~Wi~~l~~~~~~ 100 (115)
T 2cod_A 74 QRTFVFRVEKEEERNDWISILLNALKS 100 (115)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 567999999999999999999988843
No 46
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.56 E-value=1.6e-07 Score=88.90 Aligned_cols=103 Identities=18% Similarity=0.273 Sum_probs=77.1
Q ss_pred CCCCccccccceecccccchhcccceeEEEEe--ceeeeeecChhhhcCCCCceeecCCCceecccccc--c------Cc
Q psy3833 975 IMHVPELYDYLRCLKPKRFTMKAYKRLWVTCR--ELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNL--S------QG 1044 (1087)
Q Consensus 975 ~~~~p~l~~~lk~~~~~~~~lk~~k~~w~~~~--~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~--~------~~ 1044 (1087)
....+..++||.--..+ +|.+|+.||+++ ...|+|||++++. .+|.-.|+|++|.|..--+. . .+
T Consensus 14 ~~~~~~~~G~L~K~g~~---~~~Wk~R~fvL~~d~~~L~yy~~~~~~--~~~~g~i~L~~~~v~~~~~~~~p~~~~~~~~ 88 (129)
T 1x1g_A 14 LSGTVVKQGYLAKQGHK---RKNWKVRRFVLRKDPAFLHYYDPSKEE--NRPVGGFSLRGSLVSALEDNGVPTGVKGNVQ 88 (129)
T ss_dssp TCSEEEEEEEEEEECSS---SSSEEEEEEEEEESSCEEEEECSSSCC--SSCSCCEESTTCCCEECCSSSSCSSCSSCCC
T ss_pred cCCCEEEEEEEEEECCC---CCCeeeEEEEEeCCCCeEEEeCCCCcC--CccceEEECcCCEEEEeCCCCCcccccCCCC
Confidence 33456678998753222 899999999999 3799999986222 35888999999988643322 1 15
Q ss_pred eeEEEEEecCCCCCcceEEeccCHHHHHHHHHHhhhhhccc
Q psy3833 1045 KFIIKLEVPAADGMSEMFLRCENEEQYASWMAACRLQLTEN 1085 (1087)
Q Consensus 1045 k~~ikl~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~~~ 1085 (1087)
+|+++|..| .....+|.|+++++..+||.|.+-|+...
T Consensus 89 ~~~F~I~~~---~~r~~~l~a~s~~e~~~Wi~al~~~~~~~ 126 (129)
T 1x1g_A 89 GNLFKVITK---DDTHYYIQASSKAERAEWIEAIKKLTSGP 126 (129)
T ss_dssp SSCEEECCT---TCCCEEECCSSHHHHHHHHHHHHHHSSSS
T ss_pred CceEEEEcC---CCCEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence 688888654 23469999999999999999999988643
No 47
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=98.56 E-value=1.2e-07 Score=90.91 Aligned_cols=92 Identities=25% Similarity=0.415 Sum_probs=76.2
Q ss_pred cccchhcccceeEEEEeceeeeeecChhhhcC---------CCCceeecCCCceecccc-cccCceeEEEEEecCCCCCc
Q psy3833 990 PKRFTMKAYKRLWVTCRELQLRFYKSREDAQH---------SSPINEFSLRGCEVTPDV-NLSQGKFIIKLEVPAADGMS 1059 (1087)
Q Consensus 990 ~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~---------~~~~~~~~l~gcev~pdv-~~~~~k~~ikl~~p~~~~~~ 1059 (1087)
.||...|.+|++|||+++..|+|||++.+... ..|...++|+||.|.+.- +-+++|++++|..| +| .
T Consensus 23 gkk~~~r~W~~~w~VL~~~~L~~yKd~~~~~~~~~~~~~~~~~~~~~i~L~~a~v~~~~~d~~krk~vF~l~t~--~~-~ 99 (124)
T 3pp2_A 23 GKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAPKDKSSRKNVLELRSR--DG-S 99 (124)
T ss_dssp TEECSSCCCEEEEEEEETTEEEEESCSBCC---CBCCGGGGCSEEEEEECTTCEEEECCGGGCSSSSEEEEECT--TS-C
T ss_pred CccCCCCCceEEEEEEECCEEEEEecCccccccCccCcccccCCcceEEcCCCEEEecccccCCCceEEEEECC--CC-C
Confidence 56777789999999999999999998765421 257789999999988875 77889999998743 33 5
Q ss_pred ceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1060 EMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1060 e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
|.+|.++++++-.+|+.+.+-||.|
T Consensus 100 ~ylfqA~s~~e~~~Wi~aI~~aI~~ 124 (124)
T 3pp2_A 100 EYLIQHDSEAIISTWHKAIAQGIQE 124 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHC-
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhC
Confidence 7899999999999999999998865
No 48
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.56 E-value=1.6e-07 Score=86.87 Aligned_cols=97 Identities=10% Similarity=0.122 Sum_probs=74.8
Q ss_pred CccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCc-eecccccccCceeEEEEEecCCC
Q psy3833 978 VPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGC-EVTPDVNLSQGKFIIKLEVPAAD 1056 (1087)
Q Consensus 978 ~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gc-ev~pdv~~~~~k~~ikl~~p~~~ 1056 (1087)
-+..++||.--. -.+|.+|+.||++++..|+|||++++. +|.-.|+|.+| .|.+--+..+++|++.|..|
T Consensus 7 ~~~~~G~L~K~~---~~~~~Wk~R~fvL~~~~L~yy~~~~~~---~~~g~i~L~~~~~v~~~~~~~~~~~~F~i~~~--- 77 (115)
T 2dn6_A 7 GVLKQGYMMKKG---HRRKNWTERWFVLKPNIISYYVSEDLK---DKKGDILLDENCCVESLPDKDGKKCLFLVKCF--- 77 (115)
T ss_dssp SCSEEEEEEEEC---TTSSCEEEEEEEECSSCEEEESSTTCS---SEEEEECCCTTCEEEEECCCTTCCSEEEEECS---
T ss_pred CceEEEEEEecC---CCCCCcEEeEEEEECCEEEEeCCCCCc---ccCcEEEecCcEEEEECCCCCCCeeEEEEEeC---
Confidence 355778986422 157899999999999999999997653 47889999985 44433234567788887544
Q ss_pred CCcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1057 GMSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1057 ~~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
....+|+|+++++..+||.|.+-|+..
T Consensus 78 -~r~~~l~a~s~~e~~~Wi~ai~~~~~~ 104 (115)
T 2dn6_A 78 -DKTFEISASDKKKKQEWIQAIHSTIHL 104 (115)
T ss_dssp -SCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 356999999999999999999998764
No 49
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=1.9e-07 Score=87.49 Aligned_cols=95 Identities=18% Similarity=0.266 Sum_probs=76.1
Q ss_pred CCccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCC
Q psy3833 977 HVPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAAD 1056 (1087)
Q Consensus 977 ~~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~ 1056 (1087)
.-+..++||.--..+ ..|.+|+.||++++..|+|||++++ .|...++|.+|.|.|+ ..++||+.|.-|
T Consensus 8 ~~~~~~G~L~K~~~~--~~k~WkkR~fvL~~~~L~yyk~~~~----~~~~~i~l~~~~v~~~---~~~~~~F~I~~~--- 75 (114)
T 2da0_A 8 YGSEKKGYLLKKSDG--IRKVWQRRKCSVKNGILTISHATSN----RQPAKLNLLTCQVKPN---AEDKKSFDLISH--- 75 (114)
T ss_dssp CCSCEEEEEEEECSS--SCCCEEEEEEEEETTEEEECCSSCC----SCCEEEETTTSEEEEC---SSSSSCEEEEET---
T ss_pred CCccEEEEEEEeCCC--CCCCceeEEEEEeCCEEEEEcCCCC----CCCCEEEeeeeEEEEC---CCCCCEEEEEcC---
Confidence 346788998754332 3499999999999999999999653 4667889999998864 456788888743
Q ss_pred CCcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1057 GMSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1057 ~~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
....+|.|+||++..+||.|.+-|+..
T Consensus 76 -~r~~~l~a~s~~e~~~Wi~al~~~~~~ 102 (114)
T 2da0_A 76 -NRTYHFQAEDEQDYVAWISVLTNSKEE 102 (114)
T ss_dssp -TEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred -CcEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999987754
No 50
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=98.52 E-value=2e-07 Score=97.72 Aligned_cols=100 Identities=14% Similarity=0.281 Sum_probs=80.1
Q ss_pred ccccccceecccc-cchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceeccccc---ccCceeEEEEEecC
Q psy3833 979 PELYDYLRCLKPK-RFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVN---LSQGKFIIKLEVPA 1054 (1087)
Q Consensus 979 p~l~~~lk~~~~~-~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~---~~~~k~~ikl~~p~ 1054 (1087)
+..++||.--..+ ++..|.+|+.||++++..|+|||++.+. .|.-.|+|.+|.++...+ -.+++||+.|..|
T Consensus 106 v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~~~~L~Yyk~~~~~---~p~g~I~L~~~~~v~~~~~~~~~~k~~~F~I~t~- 181 (211)
T 1u5e_A 106 VIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDK---QQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAP- 181 (211)
T ss_dssp EEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTCS---SCSEEEECTTCEEEECGGGCSSTTGGGEEEEECS-
T ss_pred ccEEEEEEEECCCCCcCCCCcEeEEEEEECCEEEEEcCCCCc---cceEEEEeCCcEEEEcCCccccCCCCCEEEEEcC-
Confidence 4567998655442 3457999999999999999999997763 488899999999987543 2345689988765
Q ss_pred CCCCcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1055 ADGMSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1055 ~~~~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
+....+|.|+++++..+||.|.+-|++.
T Consensus 182 --~~r~~~l~A~s~~e~~~Wi~aL~~ai~~ 209 (211)
T 1u5e_A 182 --DKRIYQFTAASPKDAEEWVQQLKFILQD 209 (211)
T ss_dssp --SSCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred --CCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999998864
No 51
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=98.52 E-value=1.5e-07 Score=88.35 Aligned_cols=99 Identities=14% Similarity=0.284 Sum_probs=78.1
Q ss_pred CCccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccc---cccCceeEEEEEec
Q psy3833 977 HVPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDV---NLSQGKFIIKLEVP 1053 (1087)
Q Consensus 977 ~~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv---~~~~~k~~ikl~~p 1053 (1087)
......+||.-- .-..|.+|+.||++++..|+|||++.+ .+|...|+|.+|..+..+ +...++|++.|..+
T Consensus 12 ~~~~~~G~L~K~---g~~~~~Wk~R~fvL~~~~L~yy~~~~~---~~~~g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~~ 85 (125)
T 1eaz_A 12 SAVIKAGYCVKQ---GAVMKNWKRRYFQLDENTIGYFKSELE---KEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTT 85 (125)
T ss_dssp CCCSEEEEEEEE---CTTTCCEEEEEEEECSSEEEEESSTTC---SSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEECS
T ss_pred CCccEEEEEEEe---CCCCCCcceEEEEEeCCEEEEEcCCCC---CcceeEEEcccceEEeeccccccCCcCCEEEEEeC
Confidence 345678998742 225789999999999999999999775 348889999999754432 34567888888743
Q ss_pred CCCCCcceEEeccCHHHHHHHHHHhhhhhccc
Q psy3833 1054 AADGMSEMFLRCENEEQYASWMAACRLQLTEN 1085 (1087)
Q Consensus 1054 ~~~~~~e~~l~~~~e~qya~wmaacrl~~~~~ 1085 (1087)
....+|.|+||++..+||.|.+-|+..+
T Consensus 86 ----~r~~~l~a~s~~e~~~W~~al~~~i~~~ 113 (125)
T 1eaz_A 86 ----SRTFYVQADSPEEMHSWIKAVSGAIVAQ 113 (125)
T ss_dssp ----SCEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred ----CcEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999988653
No 52
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=98.47 E-value=3.2e-07 Score=99.35 Aligned_cols=108 Identities=16% Similarity=0.250 Sum_probs=80.6
Q ss_pred CCCCCCcccccccee------cccccc---hhcccceeEEEEeceeeeeecChhhh---cCCCCceeecCCCceeccccc
Q psy3833 973 PDIMHVPELYDYLRC------LKPKRF---TMKAYKRLWVTCRELQLRFYKSREDA---QHSSPINEFSLRGCEVTPDVN 1040 (1087)
Q Consensus 973 ~~~~~~p~l~~~lk~------~~~~~~---~lk~~k~~w~~~~~~~l~~~k~~~~~---~~~~~~~~~~l~gcev~pdv~ 1040 (1087)
+.....+.-++||.. -|-.+. ..|.+|++|||+++..|+|||++... ...+|...|+|.||.|..-.+
T Consensus 5 ~~~~~~v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~~~L~yyK~~~~~~~~~~~~p~g~I~L~~~~v~~~~~ 84 (263)
T 3a8p_A 5 SKEQGVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAEDSIVQSVPE 84 (263)
T ss_dssp -----CEEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEETTEEEEESSCCC------CCCSEEEECTTCEEEECTT
T ss_pred cccCCCeEEEEEeeecccccccCCCCccCccCCCceEEEEEEcCCEEEEEecCcccccccccCccceEEcCCcEEEECCc
Confidence 344445667799872 244444 38999999999999999999986321 125688899999999876444
Q ss_pred ccCceeEEEEEecCCCCCcceEEeccCHHHHHHHHHHhhhhhc
Q psy3833 1041 LSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAACRLQLT 1083 (1087)
Q Consensus 1041 ~~~~k~~ikl~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~ 1083 (1087)
-.+++||++|.-| ...+.+|.++|+++-.+||.|.+-|+.
T Consensus 85 ~~kk~~~F~I~t~---~~r~y~f~A~s~ee~~~Wi~aI~~a~~ 124 (263)
T 3a8p_A 85 HPKKEHVFCLSNS---CGDVYLFQATSQTDLENWVTAIHSACA 124 (263)
T ss_dssp CSSCSSEEEEECT---TSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcC---CCcEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 4567999999765 456899999999999999999988764
No 53
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=98.44 E-value=2.8e-07 Score=91.85 Aligned_cols=99 Identities=16% Similarity=0.360 Sum_probs=67.9
Q ss_pred cccccceecc-----ccc--chhcccceeEEEEeceeeeeecChhhhcCCCCce--eecCCCceecccccccCceeEEEE
Q psy3833 980 ELYDYLRCLK-----PKR--FTMKAYKRLWVTCRELQLRFYKSREDAQHSSPIN--EFSLRGCEVTPDVNLSQGKFIIKL 1050 (1087)
Q Consensus 980 ~l~~~lk~~~-----~~~--~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~--~~~l~gcev~pdv~~~~~k~~ikl 1050 (1087)
..++||..-. .+| -..|.+|+.|||+++..|+|||++.+.. ..|.. .|++.+|.+....+-.+++||++|
T Consensus 4 ~~eG~L~~k~~~~~~gkK~g~~~k~WkkRwfvL~~~~L~yyk~~~~~~-~~~~g~i~l~~~~~~~~~~~~~~~~~~~F~I 82 (168)
T 2j59_M 4 AKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQT-TPSEEEQPISVNACLIDISYSETKRKNVFRL 82 (168)
T ss_dssp CEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC---------CEECSSCEEEECSSSCSCSSEEEE
T ss_pred cEEEEEeeeeecccCCcccCCCCCCceEEEEEEeCCEEEEEECCcccc-cccCCceEecccceEEEeccccCCCCCEEEE
Confidence 4567776321 122 4689999999999999999999986632 22333 355566876544445678899999
Q ss_pred EecCCCCCcceEEeccCHHHHHHHHHHhhhhhc
Q psy3833 1051 EVPAADGMSEMFLRCENEEQYASWMAACRLQLT 1083 (1087)
Q Consensus 1051 ~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~ 1083 (1087)
..|. .+.+|.|++|++-.+||.|.+-|+.
T Consensus 83 ~t~~----r~~~l~A~s~~e~~~Wi~ai~~~~~ 111 (168)
T 2j59_M 83 TTSD----CECLFQAEDRDDMLAWIKTIQESSN 111 (168)
T ss_dssp ECSS----CEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred EeCC----ceEEEEcCCHHHHHHHHHHHHHHHh
Confidence 8653 5799999999999999999998765
No 54
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.44 E-value=1.4e-07 Score=92.51 Aligned_cols=28 Identities=50% Similarity=0.833 Sum_probs=27.0
Q ss_pred hhhcccccccccccccCceeeeecceee
Q psy3833 890 AWLDSSLSIYEQGVKEFDTLRLRFKFYS 917 (1087)
Q Consensus 890 r~l~ss~sl~~q~~~E~~~l~lrFkyy~ 917 (1087)
+|||+|||||||||+|++.|+||||||-
T Consensus 98 ~WLD~srtL~EQGI~e~~tllLRrKfff 125 (128)
T 2kc2_A 98 NWLDHGRTLREQGVEEHETLLLRRKFFY 125 (128)
T ss_dssp EEECSSSCHHHHTCCTTSEEEEEESSCC
T ss_pred CcccCCCcHHHcCCCCCCEEEEEEEEec
Confidence 8999999999999999999999999983
No 55
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=98.40 E-value=3.9e-07 Score=87.33 Aligned_cols=105 Identities=14% Similarity=0.155 Sum_probs=76.9
Q ss_pred CccccccceecccccchhcccceeEEEEeceeeeeecChhhh-cCCC-----CceeecCCCceeccccc-ccCceeEEEE
Q psy3833 978 VPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDA-QHSS-----PINEFSLRGCEVTPDVN-LSQGKFIIKL 1050 (1087)
Q Consensus 978 ~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~-~~~~-----~~~~~~l~gcev~pdv~-~~~~k~~ikl 1050 (1087)
.+..++||.-- .-..|.+|+-|||+++..|+|||++.+. .... +.-.|+|.+|.|..--+ ..+++|+++|
T Consensus 11 ~~~k~G~L~K~---g~~~k~Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~~~~G~I~L~~~~v~~~~~~~~~k~~~F~I 87 (124)
T 2w2x_D 11 EHKQQGELYMW---DSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAPQGKNQKSFVFIL 87 (124)
T ss_dssp --CCEEEEEEE---ETTTTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCCCSCSEEEEGGGEEEEECTTCBTTBSEEEEE
T ss_pred hcceeEEEEEE---CCCCCCceEeEEEEECCEEEEEcccccccccccccCCccccEEECCCCEEEEccCCcCCCCEEEEE
Confidence 45678888642 2347999999999999999999997653 1122 34589999999876443 3567899999
Q ss_pred EecCCCCCcceEEeccCHHHHHHHHHHhhhhhcccC
Q psy3833 1051 EVPAADGMSEMFLRCENEEQYASWMAACRLQLTENN 1086 (1087)
Q Consensus 1051 ~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~~~~ 1086 (1087)
.-|.. +....||.|+++++-.+||.|.|-|+..++
T Consensus 88 ~~~~~-~~~~~~~~A~s~ee~~~Wi~ai~~a~~~~~ 122 (124)
T 2w2x_D 88 EPKQQ-GDPPVEFATDKVEELFEWFQSIREITWKID 122 (124)
T ss_dssp EECC---CCCEEEEECCCHHHHHHHHHHHHHHC---
T ss_pred ECCCC-CCceEEEEECCHHHHHHHHHHHHHHHHhhc
Confidence 76654 355688999999999999999998876553
No 56
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.40 E-value=5.4e-07 Score=88.16 Aligned_cols=94 Identities=16% Similarity=0.277 Sum_probs=75.0
Q ss_pred ccccceecccccchhcccceeEEEEeceeeeeec----ChhhhcCCCCceeecCCCceec---ccccccCceeEEEEEec
Q psy3833 981 LYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYK----SREDAQHSSPINEFSLRGCEVT---PDVNLSQGKFIIKLEVP 1053 (1087)
Q Consensus 981 l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k----~~~~~~~~~~~~~~~l~gcev~---pdv~~~~~k~~ikl~~p 1053 (1087)
-++||. |--+--.|.+|+=|||+++..|.||| ++++ .+|+-.|.|.||.|. |+-+..++||++++.-|
T Consensus 10 ~~G~L~--KqG~~~~K~WKrRwFVL~~~~LyYfk~~~~~~~~---~~p~G~I~L~g~tV~~~~~~~~~~~~k~~F~~v~~ 84 (126)
T 1wi1_A 10 HSGYLW--AIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKK---AEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKE 84 (126)
T ss_dssp EEEEEE--EECSSSCCSCEEEEEEEEEEETTEEEEEECCSSS---SCCSEEEECSSCEEEECCCCSSCCSCSSEEEEECS
T ss_pred eeEEEE--EeCCCcccccceEEEEEeCCEEEEEEcccccccC---CCCceEEECCCcEEEEecCCcccccCceEEEEecC
Confidence 447763 22222349999999999999999999 5543 469999999999987 66666688999997643
Q ss_pred CCCCCcceEEeccCHHHHHHHHHHhhhhhc
Q psy3833 1054 AADGMSEMFLRCENEEQYASWMAACRLQLT 1083 (1087)
Q Consensus 1054 ~~~~~~e~~l~~~~e~qya~wmaacrl~~~ 1083 (1087)
|+. .+|-||+|++-..||.|.+-|+-
T Consensus 85 ---~~t-y~~~Adseee~~~WikAi~~A~~ 110 (126)
T 1wi1_A 85 ---GDT-VIFASDDEQDRILWVQAMYRATG 110 (126)
T ss_dssp ---SCE-EEEECSSHHHHHHHHHHHHHHHT
T ss_pred ---Cce-EEEEcCCHHHHHHHHHHHHHHhc
Confidence 554 99999999999999999998874
No 57
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=98.40 E-value=4.8e-07 Score=101.37 Aligned_cols=100 Identities=20% Similarity=0.360 Sum_probs=81.6
Q ss_pred ccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCC---
Q psy3833 979 PELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAA--- 1055 (1087)
Q Consensus 979 p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~--- 1055 (1087)
|..++||.-- ..+ .|.+|+.|||+++..|+|||++.+. +|.-.|+|.+|.|.+ +.-.+++||++|..|..
T Consensus 213 ~~k~G~L~K~-g~~--~k~WkkRwFVL~~~~L~Yyk~~~~~---~p~G~I~L~~~~v~~-~~~~~~~~~F~I~~~~~~~~ 285 (347)
T 2r09_A 213 PDREGWLLKL-GGR--VKTWKRRWFILTDNCLYYFEYTTDK---EPRGIIPLENLSIRE-VEDPRKPNCFELYNPSHKGQ 285 (347)
T ss_dssp CCEEEEEEEE-CSS--SCCEEEEEEEEETTEEEEESSTTCS---SCSEEEECTTCEEEE-ECCSSCSSEEEEECSSSTTC
T ss_pred cccCCeeEec-CCC--cccceeEEEEEcCCEEEEEcCCCcc---CCcEEEEcCCeEEEE-ccCCCCCCEEEEEeCCcccc
Confidence 7888999543 222 6999999999999999999997653 488899999999876 33467889999988742
Q ss_pred ---------CC------CcceEEeccCHHHHHHHHHHhhhhhccc
Q psy3833 1056 ---------DG------MSEMFLRCENEEQYASWMAACRLQLTEN 1085 (1087)
Q Consensus 1056 ---------~~------~~e~~l~~~~e~qya~wmaacrl~~~~~ 1085 (1087)
+| ....+|.|+|+++..+||.|.+-|+..+
T Consensus 286 ~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~~~ 330 (347)
T 2r09_A 286 VIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRD 330 (347)
T ss_dssp CCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHHCC
T ss_pred ccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence 22 4678999999999999999999988654
No 58
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.38 E-value=1.3e-06 Score=87.41 Aligned_cols=98 Identities=17% Similarity=0.294 Sum_probs=73.6
Q ss_pred CCCccc-cccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccc-cCceeEEEEEec
Q psy3833 976 MHVPEL-YDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNL-SQGKFIIKLEVP 1053 (1087)
Q Consensus 976 ~~~p~l-~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~-~~~k~~ikl~~p 1053 (1087)
+..|-+ ++||.--.+ ..|.+|+.||++++..|.|||++.+.. |...|+|.+|.++.+.+. ...++++.|.-|
T Consensus 14 ~~~pv~keG~L~Kkg~---~~k~WkrRWFvLk~~~L~Yyk~~~d~~---~~g~I~L~~~~~~~~~~~~~~~~~~F~I~t~ 87 (149)
T 1x1f_A 14 TALPLYFEGFLLIKRS---GYREYEHYWTELRGTTLFFYTDKKSII---YVDKLDIVDLTCLTEQNSTEKNCAKFTLVLP 87 (149)
T ss_dssp SSSCEEEEEEEEEECT---TCCSCEEEEEEEETTEEEEESCSSCSS---CSEECCCSSCCEEEECCCTTSCCCEEEEECS
T ss_pred CCCCccEEEEEEEeCC---CCCCceeEEEEEcCCEEEEEeCCCccc---cCcEEECCCceEEeeccCCCCcCcEEEEEcC
Confidence 334433 388864332 349999999999999999999987655 778999999988744332 233566776543
Q ss_pred CCCCCcceEEeccCHHHHHHHHHHhhhhhc
Q psy3833 1054 AADGMSEMFLRCENEEQYASWMAACRLQLT 1083 (1087)
Q Consensus 1054 ~~~~~~e~~l~~~~e~qya~wmaacrl~~~ 1083 (1087)
..+.+|.++|+++-.+||.|.+-++.
T Consensus 88 ----~r~~~f~A~s~ee~~eWi~aI~~v~~ 113 (149)
T 1x1f_A 88 ----KEEVQLKTENTESGEEWRGFILTVTE 113 (149)
T ss_dssp ----SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ----CCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 35789999999999999999987654
No 59
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=98.38 E-value=4.3e-07 Score=95.92 Aligned_cols=96 Identities=13% Similarity=0.228 Sum_probs=79.1
Q ss_pred ccccccceeccc--ccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCC
Q psy3833 979 PELYDYLRCLKP--KRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAAD 1056 (1087)
Q Consensus 979 p~l~~~lk~~~~--~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~ 1056 (1087)
+..++||.--.+ +++..|.+|+.||++++..|+|||++.+. .|.-.|+|.+|.++.++. .++|++.|.-
T Consensus 58 ~~k~G~L~K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~~~---~~~g~I~L~~~~~v~~~~--~k~~~F~I~t---- 128 (228)
T 3tfm_A 58 ALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEE---KLKGTVEVRSAKEIIDNT--NKENGIDIIM---- 128 (228)
T ss_dssp SSEEEEEEECGGGCSSSCGGGCEEEEEEECSSEEEEESSTTCC---SEEEEEEGGGCSEEEEET--TTTSEEEEEC----
T ss_pred cceEEEEEEECCCcCCcccCCceEEEEEEeCCEEEEEeCCCCc---ceeEEEEcCCCEEeccCC--CCCcEEEEEc----
Confidence 456688765443 34567999999999999999999998763 488899999999988765 6778888854
Q ss_pred CCcceEEeccCHHHHHHHHHHhhhhhc
Q psy3833 1057 GMSEMFLRCENEEQYASWMAACRLQLT 1083 (1087)
Q Consensus 1057 ~~~e~~l~~~~e~qya~wmaacrl~~~ 1083 (1087)
.....+|.|+|+++..+||.|.+-++.
T Consensus 129 ~~r~~~l~A~s~~e~~~Wv~aL~~~i~ 155 (228)
T 3tfm_A 129 ADRTFHLIAESPEDASQWFSVLSQVHS 155 (228)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 247899999999999999999998876
No 60
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=98.38 E-value=6.1e-07 Score=90.26 Aligned_cols=101 Identities=15% Similarity=0.235 Sum_probs=76.8
Q ss_pred cccccc-eecc-cccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccc------cCceeEEEEE
Q psy3833 980 ELYDYL-RCLK-PKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNL------SQGKFIIKLE 1051 (1087)
Q Consensus 980 ~l~~~l-k~~~-~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~------~~~k~~ikl~ 1051 (1087)
-+.+|| |=-+ .|+++.|.+|+-|||+++..|+|||++.+.. +|.-.|+|.+|.++-.|.. ...+|++++.
T Consensus 16 i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Yyk~~~~~~--~~~G~I~L~~~~~v~~~~~~~~~~~~~~~~~f~i~ 93 (164)
T 2lul_A 16 ILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKK--YRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQVV 93 (164)
T ss_dssp EEEEEEEEECCCCSSSCCCCEEEEEEEEESSEEEEECCCSSSC--CCCCEEEGGGCCEEEECCCCSSSCCSSSCSEEEEE
T ss_pred eEEEEEEEecCCCCCCCCCCceeEEEEEECCEEEEEeccCccc--ccccEEEEeeeEEEEeccccccCcccccceeEEEe
Confidence 355777 4433 4568899999999999999999999976543 3666788888765432222 3456888776
Q ss_pred ecCCCCCcceEEeccCHHHHHHHHHHhhhhhcccC
Q psy3833 1052 VPAADGMSEMFLRCENEEQYASWMAACRLQLTENN 1086 (1087)
Q Consensus 1052 ~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~~~~ 1086 (1087)
-|. .-.||.++||+.-.+||.|.|=++..|+
T Consensus 94 t~~----rt~~l~A~s~~e~~~Wi~aL~~~i~~n~ 124 (164)
T 2lul_A 94 HDA----NTLYIFAPSPQSRDLWVKKLKEEIKNNN 124 (164)
T ss_dssp CSS----CEEEEECSSHHHHHHHHHHHHHHHTTCS
T ss_pred cCC----cEEEEECCCHHHHHHHHHHHHHHHHHCh
Confidence 543 4699999999999999999999998775
No 61
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=98.28 E-value=1e-06 Score=81.53 Aligned_cols=96 Identities=10% Similarity=0.133 Sum_probs=68.9
Q ss_pred ccccccceecccccchhcccceeEEEE-eceeeeeecChhhhcCCCCceeecCCCce--------ecc--cccccCceeE
Q psy3833 979 PELYDYLRCLKPKRFTMKAYKRLWVTC-RELQLRFYKSREDAQHSSPINEFSLRGCE--------VTP--DVNLSQGKFI 1047 (1087)
Q Consensus 979 p~l~~~lk~~~~~~~~lk~~k~~w~~~-~~~~l~~~k~~~~~~~~~~~~~~~l~gce--------v~p--dv~~~~~k~~ 1047 (1087)
+...+||.--.. .+|.+|+.||++ ++..|+|||++.+.. |...++|+.+. |.+ .-+-..++|+
T Consensus 5 ~~~~G~L~K~g~---~~k~WkkR~fvL~~~~~L~yyk~~~~~~---~~g~i~l~~~~i~l~~~~~v~~v~~~~~~~~~~~ 78 (112)
T 3aj4_A 5 FVKSGWLLRQST---ILKRWKKNWFDLWSDGHLIYYDDQTRQN---IEDKVHMPMDCINIRTGQECRDTQPPDGKSKDCM 78 (112)
T ss_dssp CSEEEEEEEECS---SSCCEEEEEEEECTTSEEEEESSTTCCS---EEEEEEHHHHEEEEEEGGGCCSCCCSTTCCGGGE
T ss_pred eeEEEEEEeeCC---CCCCeeceEEEEeeCCEEEEEcCCCCCC---CCccccccccceeecccccccccCCCCCCCcCcE
Confidence 456788864322 578999999999 999999999977533 55566665432 221 1122344678
Q ss_pred EEEEecCCCCCcceEEeccCHHHHHHHHHHhhhhhc
Q psy3833 1048 IKLEVPAADGMSEMFLRCENEEQYASWMAACRLQLT 1083 (1087)
Q Consensus 1048 ikl~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~ 1083 (1087)
+.|..| +....+|.|+||++..+||.|.+-|.+
T Consensus 79 F~i~~~---~~r~~~l~a~s~~e~~~Wi~al~~a~~ 111 (112)
T 3aj4_A 79 LQIVCR---DGKTISLCAESTDDCLAWKFTLQDSRT 111 (112)
T ss_dssp EEEEET---TSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred EEEEec---CCcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 888654 346799999999999999999998864
No 62
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=98.26 E-value=2.6e-06 Score=83.05 Aligned_cols=94 Identities=23% Similarity=0.348 Sum_probs=71.3
Q ss_pred ccceecccccchhcc-cceeEEEEeceeeeeecChhhhcCCCCceeecCCCceeccccccc--CceeEEEEEecCCC---
Q psy3833 983 DYLRCLKPKRFTMKA-YKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLS--QGKFIIKLEVPAAD--- 1056 (1087)
Q Consensus 983 ~~lk~~~~~~~~lk~-~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~--~~k~~ikl~~p~~~--- 1056 (1087)
+||.+-- +--+|+ .|+||||+.+..|+|||..+| ++|--.|.|.|+.|.+ |.-. ++|||+.|+.|...
T Consensus 16 GWL~k~~--~g~~k~~wk~rWFVLt~~~L~yyKd~~e---ke~~G~IpL~~~~vr~-v~~~~~~rk~~F~l~~~d~r~v~ 89 (125)
T 1dyn_A 16 GWLTINN--IGIMKGGSKEYWFVLTAENLSWYKDDEE---KEKKYMLSVDNLKLRD-VEKGFMSSKHIFALFNTEQRNVY 89 (125)
T ss_dssp EEEEESC--CCGGGTSSEEEEEEEESSEEEEESSTTC---SCEEEEEECTTEEEEE-CCSCSSSSCEEEEEEETTSSCSS
T ss_pred EEEEEec--CccccCCceeeEEEEeccceeeecCCcc---cccceEEECCCceEec-cCCCCCCCceEEEEECCCCcccc
Confidence 6665521 233675 999999999999999999775 4477789999998865 3322 68999999987522
Q ss_pred -CCcceEEeccCHHHHHHHHHHh-hhhh
Q psy3833 1057 -GMSEMFLRCENEEQYASWMAAC-RLQL 1082 (1087)
Q Consensus 1057 -~~~e~~l~~~~e~qya~wmaac-rl~~ 1082 (1087)
...=..|-|+|.+.--.|+||. |-++
T Consensus 90 ~~h~~y~LsA~t~ee~~~Wi~s~~ra~v 117 (125)
T 1dyn_A 90 KDYRQLELACETQEEVDSWKASFLRAGV 117 (125)
T ss_dssp TTCSSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHhCcc
Confidence 2245689999999999999999 6543
No 63
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=98.23 E-value=5.4e-06 Score=80.25 Aligned_cols=111 Identities=10% Similarity=0.187 Sum_probs=79.2
Q ss_pred cCCCCCCCCccccccceecccccchhcccceeEEEEe---ceeeeeecChhhh-cCCCCceeecCCCc-eecccc-c-cc
Q psy3833 970 LASPDIMHVPELYDYLRCLKPKRFTMKAYKRLWVTCR---ELQLRFYKSREDA-QHSSPINEFSLRGC-EVTPDV-N-LS 1042 (1087)
Q Consensus 970 ~~~~~~~~~p~l~~~lk~~~~~~~~lk~~k~~w~~~~---~~~l~~~k~~~~~-~~~~~~~~~~l~gc-ev~pdv-~-~~ 1042 (1087)
+.++-++.--.+++||.--.+. ..|.+|+=|||++ +..|.|||+..+. ...+|+-.|+|.+| +|.+.- . -.
T Consensus 6 ~~~~~~~~~~~~~G~L~K~g~~--~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~~~~~~~G~I~L~~~~~V~~~~~~~~~ 83 (126)
T 1v5p_A 6 SGMPYVDRQNRICGFLDIEDNE--NSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKP 83 (126)
T ss_dssp CSSCCCCCCCCEECCEEEECTT--CSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSC
T ss_pred ccCceecCCCceEEEEEEeCCC--CCCCccceEEEEecCCCCEEEEECCCCCCCCCceeeEEEECCCccEEecCCcccCC
Confidence 4444455445567898543322 4699999999999 8899999985431 12579999999995 554432 1 22
Q ss_pred CceeEEEEEecCCCCCcceEEeccCHHHHHHHHHHhhhhhcccC
Q psy3833 1043 QGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAACRLQLTENN 1086 (1087)
Q Consensus 1043 ~~k~~ikl~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~~~~ 1086 (1087)
..+||+.+ . .++...||.|+||++-.+||.|.+-|++-..
T Consensus 84 ~~~~~F~i--~--t~~r~y~l~A~s~~e~~~Wi~al~~a~~~~~ 123 (126)
T 1v5p_A 84 KTPFCFVI--N--ALSQRYFLQANDQKDLKDWVEALNQASKSGP 123 (126)
T ss_dssp SCSSEEEE--E--CSSCEEEEECSSHHHHHHHHHHHHHTTTTSS
T ss_pred CCCEEEEE--E--CCCEEEEEECCCHHHHHHHHHHHHHHHhcCC
Confidence 55699844 2 2466799999999999999999999876543
No 64
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=98.21 E-value=1.7e-06 Score=81.63 Aligned_cols=102 Identities=15% Similarity=0.217 Sum_probs=73.9
Q ss_pred CccccccceecccccchhcccceeEEEEe-ceeeeeecChhhhc-CC-CCceeecCCCceecccccccCceeEEEEEecC
Q psy3833 978 VPELYDYLRCLKPKRFTMKAYKRLWVTCR-ELQLRFYKSREDAQ-HS-SPINEFSLRGCEVTPDVNLSQGKFIIKLEVPA 1054 (1087)
Q Consensus 978 ~p~l~~~lk~~~~~~~~lk~~k~~w~~~~-~~~l~~~k~~~~~~-~~-~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~ 1054 (1087)
.+...+||.-- .. .+|.+|+.||+++ +..|.|||++.+.. .| -|+..+.+..|.+.+. + .+++||++|..|.
T Consensus 7 ~~~~~G~L~K~-g~--~~k~WkkRwfvL~~~~~L~yy~~~~~~~~~g~i~L~~~~~~~~~~~~~-~-~~~~~~F~I~~~~ 81 (125)
T 1unq_A 7 AIVKEGWLHKR-GE--YIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKT-E-RPRPNTFIIRCLQ 81 (125)
T ss_dssp CEEEEEEEEEE-CS--SSCCEEEEEEEEETTSEEEEESSCCCSHHHHTSCSEEEECTTCEEEEE-C-SSSTTEEEEEEEE
T ss_pred CeeEEeeEEec-cC--CccCccCcEEEEecCCEEEEEeCCCCCCCCceeEccceeEEeeeeccc-c-cCCCCEEEEEecC
Confidence 45678998632 22 4799999999999 58999999977633 11 2555555555554332 1 3667899988765
Q ss_pred CCCCcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1055 ADGMSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1055 ~~~~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
.......+|.++++++..+||.|.+-|+..
T Consensus 82 ~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~ 111 (125)
T 1unq_A 82 WTTVIERTFHVETPEEREEWTTAIQTVADG 111 (125)
T ss_dssp TTEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCceeEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 445568899999999999999999988754
No 65
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=98.17 E-value=2.8e-06 Score=92.15 Aligned_cols=98 Identities=19% Similarity=0.350 Sum_probs=75.6
Q ss_pred CCCccccccceecccccchhcccceeEEEEece-------eeeeecChhhhcC--CCCceeecCCCce-ecccccccCce
Q psy3833 976 MHVPELYDYLRCLKPKRFTMKAYKRLWVTCREL-------QLRFYKSREDAQH--SSPINEFSLRGCE-VTPDVNLSQGK 1045 (1087)
Q Consensus 976 ~~~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~-------~l~~~k~~~~~~~--~~~~~~~~l~gce-v~pdv~~~~~k 1045 (1087)
+.-+..++||+- + |.+|+.|||+++. .|+|||++.+... .+|.-.|+|.+|. |.+.-+ .+++
T Consensus 7 ~~~v~k~G~L~K----~---K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~~~p~g~I~L~~~~~V~~~~~-~~~~ 78 (264)
T 1qqg_A 7 FSDVRKVGYLRK----P---KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRAD-SKNK 78 (264)
T ss_dssp --CEEEEEEEEC----T---TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECC-SSCS
T ss_pred CCCccEEEEEEE----C---CCCEeEEEEEECCCCCCCCCEEEEECCCccccccccCcceEEEeeceEEEEeccC-CCCC
Confidence 334667899852 2 8999999999999 9999999887442 2588899999997 333222 5678
Q ss_pred eEEEEEecCCCCCcceEEeccCHHHHHHHHHHhhhhhccc
Q psy3833 1046 FIIKLEVPAADGMSEMFLRCENEEQYASWMAACRLQLTEN 1085 (1087)
Q Consensus 1046 ~~ikl~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~~~ 1085 (1087)
|++.|.-| ..-.+|.|+||++..+||.|.+-++..+
T Consensus 79 ~~F~I~t~----~rty~l~A~se~e~~~Wi~aL~~~~~~~ 114 (264)
T 1qqg_A 79 HLVALYTR----DEHFAIAADSEAEQDSWYQALLQLHNRA 114 (264)
T ss_dssp SEEEEEES----SCEEEEECSSHHHHHHHHHHHHHHC---
T ss_pred cEEEEEEC----CEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 99999865 4678999999999999999999887654
No 66
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=98.17 E-value=2.2e-06 Score=86.84 Aligned_cols=101 Identities=10% Similarity=0.160 Sum_probs=74.6
Q ss_pred cccceec--ccccchhcccceeEEEEeceeeeeecChhh-hcCCCCceeecCCCceecccc-----cccCce--------
Q psy3833 982 YDYLRCL--KPKRFTMKAYKRLWVTCRELQLRFYKSRED-AQHSSPINEFSLRGCEVTPDV-----NLSQGK-------- 1045 (1087)
Q Consensus 982 ~~~lk~~--~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~-~~~~~~~~~~~l~gcev~pdv-----~~~~~k-------- 1045 (1087)
++||.=- .++++..|++|+-|||+++..|+|||+..+ ...++|.-.|+|.+|.++-.| +..+.+
T Consensus 6 eG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~~~~~~~~G~I~L~~~~~ve~~~~~~~~~~~~~~~~~~~~~ 85 (169)
T 1btk_A 6 ESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRRGEES 85 (169)
T ss_dssp EEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC-------
T ss_pred EEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEecCCccCCCCceeeEEECcceEEEEeccCCCCcchhcccccccCcc
Confidence 4666431 234477899999999999999999998422 111457889999998765433 122223
Q ss_pred -------------eEEEEEecCCCCCcceEEeccCHHHHHHHHHHhhhhhcccC
Q psy3833 1046 -------------FIIKLEVPAADGMSEMFLRCENEEQYASWMAACRLQLTENN 1086 (1087)
Q Consensus 1046 -------------~~ikl~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~~~~ 1086 (1087)
|+++|.-|. .-+||.++||+.-.+||.|.|-++..|.
T Consensus 86 ~~~~~~~i~~~~~~~F~I~t~~----rt~yl~A~s~~E~~eWi~aI~~~i~~n~ 135 (169)
T 1btk_A 86 SEMEQISIIERFPYPFQVVYDE----GPLYVFSPTEELRKRWIHQLKNVIRYNS 135 (169)
T ss_dssp --CCTTHHHHCCCEEEEEEETT----CCEEEEESCHHHHHHHHHHHHHHHTTCS
T ss_pred cccccccccccccccEEEEeCC----ceEEEEcCCHHHHHHHHHHHHHHHHHCc
Confidence 888887654 4699999999999999999999988664
No 67
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=98.09 E-value=7.3e-06 Score=93.28 Aligned_cols=100 Identities=18% Similarity=0.287 Sum_probs=74.4
Q ss_pred CCCccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceec----ccccc--cCc--eeE
Q psy3833 976 MHVPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVT----PDVNL--SQG--KFI 1047 (1087)
Q Consensus 976 ~~~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~----pdv~~--~~~--k~~ 1047 (1087)
+.-+.-++||. |-.....|++|+.|||+++..|+|||++.+.. |.-.|+|..|..+ ..+.. .+. +|+
T Consensus 266 ~~~~~k~G~L~--K~g~~~~k~WKkRwFVL~~~~L~YYk~~~d~~---~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~~ 340 (386)
T 3lju_X 266 SRNYLKEGYME--KTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAF---ARGEVFIGSKESGYTVLHGFPPSTQGHHWPHG 340 (386)
T ss_dssp SCCCSEEEEEE--ECCTTSCSCCEEEEEEEETTEEEEESSTTCSB---CSEEEECCCGGGTCEEEESCCTTCCSCCSCEE
T ss_pred ccccceeeeEE--EECCCCCCCCcccEEEEECCEEEEEecCCCcc---cceEEEeecceeeeeecccCCccccccCCCcE
Confidence 33344568875 32223348999999999999999999987654 7788999887654 22222 222 699
Q ss_pred EEEEecCCCCCcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1048 IKLEVPAADGMSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1048 ikl~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
+.|.-|. .-.||.+++|+.-.+||.|.+-++..
T Consensus 341 F~I~t~~----rty~l~A~s~~e~~~Wi~aL~~~i~~ 373 (386)
T 3lju_X 341 ITIVTPD----RKFLFACETESDQREWVAAFQKAVDR 373 (386)
T ss_dssp EEEECSS----CEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred EEEEeCC----eEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 9988653 67899999999999999999988753
No 68
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.05 E-value=7.6e-06 Score=78.62 Aligned_cols=95 Identities=14% Similarity=0.278 Sum_probs=65.4
Q ss_pred cccccceecccccchhcccceeEEEE-eceeeeeecChhhhcCCCCceeecCC-Cc-eec-----cccc---ccCceeEE
Q psy3833 980 ELYDYLRCLKPKRFTMKAYKRLWVTC-RELQLRFYKSREDAQHSSPINEFSLR-GC-EVT-----PDVN---LSQGKFII 1048 (1087)
Q Consensus 980 ~l~~~lk~~~~~~~~lk~~k~~w~~~-~~~~l~~~k~~~~~~~~~~~~~~~l~-gc-ev~-----pdv~---~~~~k~~i 1048 (1087)
..++||.=- .. .+|.+|+.|||+ ++..|+|||++.+.. +.-.+.|. .| +|. .+|. -..++|++
T Consensus 9 ~~~G~L~K~--g~-~~k~WkkRwFVL~~~~~L~Yyk~~~~~~---~~g~i~l~~~~~~i~~~~~~~~v~~~~~~~~~~~F 82 (130)
T 2d9v_A 9 VRGGWLWRQ--SS-ILRRWKRNWFALWLDGTLGYYHDETAQD---EEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDGLL 82 (130)
T ss_dssp EEEEEEEEE--CS-SSCCEEEEEEEEETTTEEEEESSSSTTS---EEEEEECTTTEEEEEEGGGCSSCCCCSSCCTTTEE
T ss_pred eEEEEEEee--cC-ccCCceeeEEEEccCCEEEEEeCCCCCC---cCceEecccceeEEeccccccccCCCCCCCcCcEE
Confidence 467887522 22 468999999999 899999999976543 33334443 12 111 1121 23456888
Q ss_pred EEEecCCCCCcceEEeccCHHHHHHHHHHhhhhhc
Q psy3833 1049 KLEVPAADGMSEMFLRCENEEQYASWMAACRLQLT 1083 (1087)
Q Consensus 1049 kl~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~ 1083 (1087)
+|..+ +++ ..+|.|+||++-.+||.|.+-|+.
T Consensus 83 ~I~~~--~~r-~~~l~A~s~~e~~~Wi~al~~a~~ 114 (130)
T 2d9v_A 83 TVNLR--EGS-RLHLCAETRDDAIAWKTALMEANS 114 (130)
T ss_dssp EEEET--TSC-EEEEECSSHHHHHHHHHHHHHHHT
T ss_pred EEEeC--CCC-EEEEEcCCHHHHHHHHHHHHHHHc
Confidence 88754 344 699999999999999999998864
No 69
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=98.04 E-value=8.9e-07 Score=89.11 Aligned_cols=35 Identities=63% Similarity=1.046 Sum_probs=32.5
Q ss_pred cccccccCChhHHHHHHHHHhhhcCCCCchhhhccc
Q psy3833 88 KSLYLSSLNKEEQYASWMAACRLASKGRTLADSSYE 123 (1087)
Q Consensus 88 ~~l~~~~~~~eeq~a~wmaA~~la~kGkTLAdKg~E 123 (1087)
.++|+||. +|+||++|||||+|++||+||||++|+
T Consensus 105 ~e~~Lrcd-sE~QYa~WMAAcrLAskGkTmADsSy~ 139 (165)
T 4bbk_A 105 NEVYLRCD-HEDQYARWMAACILASKGKTMADSSYQ 139 (165)
T ss_dssp EEEEEEES-SHHHHHHHHHHHHHHHTTCCTTSTTHH
T ss_pred eeeeeecC-CHHHHHHHHHHhhhcccccchhhhhhh
Confidence 68999976 689999999999999999999999986
No 70
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=98.00 E-value=1e-05 Score=91.35 Aligned_cols=99 Identities=12% Similarity=0.192 Sum_probs=74.7
Q ss_pred CccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCCC
Q psy3833 978 VPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADG 1057 (1087)
Q Consensus 978 ~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~ 1057 (1087)
.+..++||.---.+.+.-+.+|+.||++++..|.|||+. + .+|...|+|++|.|.+--+ ..++||++|..| +|
T Consensus 277 ~~~k~G~L~K~~~~~~~~~~WkkRwfvL~~~~L~y~k~~-~---~~~~~~i~l~~~~v~~~~~-~~r~~~F~i~t~--~~ 349 (385)
T 2q13_A 277 LTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARG-D---VAGGLAMDIDNCSVMAVDC-EDRRYCFQITSF--DG 349 (385)
T ss_dssp CSCCEEEEEEC--------CCEEEEEEEETTEEEEECSS-C---SSCEEEEECTTCEEEEECC-TTCSSEEEEECT--TS
T ss_pred CccEEEEEEEecCCCCCcCCceeEEEEEECCEEEEecCC-C---cCCCceEEccceEEEeccc-cCCCceEEEEeC--CC
Confidence 456789986432222222469999999999999999993 3 3477899999999886443 567799999755 45
Q ss_pred CcceEEeccCHHHHHHHHHHhhhhhc
Q psy3833 1058 MSEMFLRCENEEQYASWMAACRLQLT 1083 (1087)
Q Consensus 1058 ~~e~~l~~~~e~qya~wmaacrl~~~ 1083 (1087)
....+|.|++|+.-.+||.|.+-++.
T Consensus 350 ~~~~~l~A~s~~e~~~Wi~ai~~~~~ 375 (385)
T 2q13_A 350 KKSSILQAESKKDHEEWICTINNISK 375 (385)
T ss_dssp CBCCCEECSSHHHHHHHHHHHHHHHT
T ss_pred CeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 57899999999999999999987765
No 71
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=97.98 E-value=1.3e-06 Score=88.78 Aligned_cols=35 Identities=63% Similarity=1.067 Sum_probs=32.4
Q ss_pred cccccccCChhHHHHHHHHHhhhcCCCCchhhhccc
Q psy3833 88 KSLYLSSLNKEEQYASWMAACRLASKGRTLADSSYE 123 (1087)
Q Consensus 88 ~~l~~~~~~~eeq~a~wmaA~~la~kGkTLAdKg~E 123 (1087)
.++|+||. +|+||++|||||+|++|||||||++|+
T Consensus 126 ~e~~Lrcd-~E~qya~WMAAcrLAskGktmAdssy~ 160 (173)
T 4f7h_A 126 NEIWLRCD-NEKQYAHWMAACRLASKGKTMADSSYN 160 (173)
T ss_dssp EEEEEEES-SHHHHHHHHHHHHHHHTTCCTTSTHHH
T ss_pred ceeeeecC-CHHHHHHHHHHhhhhccCCccccccch
Confidence 77999966 689999999999999999999999985
No 72
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=97.91 E-value=2.2e-05 Score=89.27 Aligned_cols=99 Identities=15% Similarity=0.233 Sum_probs=76.4
Q ss_pred ccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCCCC
Q psy3833 979 PELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGM 1058 (1087)
Q Consensus 979 p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~ 1058 (1087)
.+-++||-.-..+-...|.+|+.||++++..|.|||+.+. .+...++|.+|.|.|.-+ ..++||+.|..| ++.
T Consensus 301 ~~k~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y~~~~~~----~~~~~~~l~~~~v~~~~~-~~r~~cF~i~~~--~~~ 373 (407)
T 4h8s_A 301 IQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRGAV----AGGLIQDLDNCSVMAVDC-EDRRYCFQITTP--NGK 373 (407)
T ss_dssp SCCEEEEEEEEECSSSCEEEEEEEEEECSSCEECCCTTCS----SCCCCBCSSCCEEEEECC-TTCSSEEEEECT--TSS
T ss_pred ceeeceeeeeccCCCCCCCceEEEEEEECCEEEEEeCCCC----CCCeEEECCceEEEECCC-CCCCceEEEEec--CCC
Confidence 4557998432222345689999999999999999997543 244467999999988544 467899999876 345
Q ss_pred cceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1059 SEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1059 ~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
.-++|.+++|+...+||.|.+-|++.
T Consensus 374 ~~~~l~A~s~~e~~~Wi~ai~~a~~~ 399 (407)
T 4h8s_A 374 SGIILQAESRKENEEWICAINNISRQ 399 (407)
T ss_dssp CCEEEECSSSHHHHHHHHHHHHHHSC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999887753
No 73
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=97.91 E-value=3e-05 Score=74.44 Aligned_cols=101 Identities=21% Similarity=0.340 Sum_probs=74.4
Q ss_pred ccccceecccccc-hhc-ccceeEEEEeceeeeeecChhhhcCCCCceeecCCCcee----cc-cccccCce---eEEEE
Q psy3833 981 LYDYLRCLKPKRF-TMK-AYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEV----TP-DVNLSQGK---FIIKL 1050 (1087)
Q Consensus 981 l~~~lk~~~~~~~-~lk-~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev----~p-dv~~~~~k---~~ikl 1050 (1087)
+.+||++ ||+= ..| ++|+-||++.+..|+|||++.+....+|...|+|..+-- .+ ||--+.+| +++++
T Consensus 3 ~eGwl~~--pk~~~~~k~~Wkkr~~vL~~~kL~~y~~~~~~~~~~p~~~Idl~~~~~V~~V~~~d~i~~~~~~~p~iF~I 80 (117)
T 2rov_A 3 LEGWLSL--PVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQTDVYRADAKEIPRIFQI 80 (117)
T ss_dssp SEEEEEC--CCCSSSSCCCCCEEEEEEETTEEEEESCHHHHHTTCCSEEECGGGEEEEEECCTTTCSSSCTTTGGGEEEE
T ss_pred eEEEEEe--ecCCCccCCCcEEEEEEEECCEEEEEECCCCcccCCceEEEECcccEEEEEcccccccccccccCCcEEEE
Confidence 5688888 6553 456 799999999999999999987763357899999976532 22 33333333 67787
Q ss_pred EecCC--CCCcceEEeccCHHHHHHHHHHhhhhhc
Q psy3833 1051 EVPAA--DGMSEMFLRCENEEQYASWMAACRLQLT 1083 (1087)
Q Consensus 1051 ~~p~~--~~~~e~~l~~~~e~qya~wmaacrl~~~ 1083 (1087)
.-+.. .....+||-++||++-.+|+.|.+-++.
T Consensus 81 ~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i~ 115 (117)
T 2rov_A 81 LYANEGISSAKNLLLLANSTEEQQKWVSRLVKKIP 115 (117)
T ss_dssp EECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHCT
T ss_pred EeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 76542 2236899999999999999999886653
No 74
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=97.88 E-value=3.6e-05 Score=73.54 Aligned_cols=102 Identities=17% Similarity=0.164 Sum_probs=69.2
Q ss_pred CccccccceecccccchhcccceeEEEEec-eeeeeecChhhhcC---C-----------CCceeecCCCceeccc----
Q psy3833 978 VPELYDYLRCLKPKRFTMKAYKRLWVTCRE-LQLRFYKSREDAQH---S-----------SPINEFSLRGCEVTPD---- 1038 (1087)
Q Consensus 978 ~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~-~~l~~~k~~~~~~~---~-----------~~~~~~~l~gcev~pd---- 1038 (1087)
+|..++||.= |..+-..|++|+-||++++ ..|+||+++.|... + .|...+.|.+|.++|-
T Consensus 3 ~~~k~G~L~K-~~g~~~~k~WkkRwFvL~~~~~l~Y~~~~~d~~~~~~~~~i~l~~~~~~~~~~~i~l~~~~~~~~~~~~ 81 (128)
T 2rlo_A 3 IPIKQSFLLK-RSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSASGS 81 (128)
T ss_dssp CEEEEEEEEE-ECSCSTTCCEEEEEEEEETTTEEEEESSHHHHHHTCSCEEEESSSCEEECSSCCCCCSSCCCSCCSCCC
T ss_pred cceeEEEEEE-ecCCCccCCccEEEEEEeCCCEEEEecchhhhccccCCCeeeeeeeEEecCCCcccccccccccccccc
Confidence 6777889853 2122247999999999995 88999998665321 1 1333445555554421
Q ss_pred -ccccCceeEEEEEecCCCCCcceEEeccCHHHHHHHHHHhhhhhc
Q psy3833 1039 -VNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAACRLQLT 1083 (1087)
Q Consensus 1039 -v~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~ 1083 (1087)
-....++||+.+.-| + ....+|.++|++.-.+||.|.+-|+.
T Consensus 82 ~~~~~~~~~~F~I~t~--~-~r~~~l~A~s~~e~~~Wi~ai~~~i~ 124 (128)
T 2rlo_A 82 AGQAEEENFEFLIVSS--T-GQTWHFEAASFEERDAWVQAIESQIL 124 (128)
T ss_dssp CSSCCCCCCCEEEECT--T-SCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred ccccccCCceEEEEcC--C-CCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 011257788887644 2 35799999999999999999998775
No 75
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=97.79 E-value=0.00029 Score=77.34 Aligned_cols=209 Identities=13% Similarity=0.190 Sum_probs=117.1
Q ss_pred cEEEEEEecCCeEEEEEEEecCCHHHHH--HHHhCCCCCchhhhcc--cccc-cccccccCcee------eeecce--ee
Q psy3833 851 PVTAQIKHADGKVEEIKLNHSMNEQQIT--WFQAELPTRIPAWLDS--SLSI-YEQGVKEFDTL------RLRFKF--YS 917 (1087)
Q Consensus 851 ~v~v~v~~~dG~~~~~~l~~~lt~~E~e--~~~aGGiLn~sr~l~s--s~sl-~~q~~~E~~~l------~lrFky--y~ 917 (1087)
.+.+++-..||+...+.+..++|..|+- +...++......|--. ...| ||--++.|..| |-|=+= .-
T Consensus 31 k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~ 110 (281)
T 4gmv_A 31 KLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLI 110 (281)
T ss_dssp EEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEE
Confidence 4667777889999999999888887775 2344555555556321 2222 34444444433 112110 00
Q ss_pred eeccCccccceeeeeeecc-cCCCCC----CCCCCchhhHH--HHHhhcccccCCcccccCCCCCCCCccccccceeccc
Q psy3833 918 IYDLNAKTDAVQVNLQSNV-AQPTDT----SSISLADDDID--AALTDLQVTLEGSHISLASPDIMHVPELYDYLRCLKP 990 (1087)
Q Consensus 918 f~d~n~K~d~vri~~q~~~-~~~~~~----~~~~~~~Ddid--~aL~~Lev~~eg~~~~~~~~~~~~~p~l~~~lk~~~~ 990 (1087)
|-.-..|| .| .+|..+ +..+ ..++-. ..|+++- .++ -...|++++||.+--.
T Consensus 111 f~~~~~ky---------~~fk~P~~f~~~~~~~~-~~~~~~~~~ll~~~~---~~~--------~~~~pe~~G~L~~k~~ 169 (281)
T 4gmv_A 111 FMERIEKY---------ALFKNPQNYLLGKKETA-EMADRNKEVLLEECF---CGS--------SVTVPEIEGVLWLKDD 169 (281)
T ss_dssp EECCHHHH---------HHHHCGGGTSSCCSSCC-CCCHHHHHHHHHHHH---SSS--------SCCCCCCEEEEEEECT
T ss_pred EEecchhh---------hcccChhhhcccccccc-ccccchHHHHHHHhh---cCC--------CCCCCccEEEEEEECC
Confidence 10001111 11 122111 1112 223332 2233221 221 1347999999966544
Q ss_pred ccchhcccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccc-----cCceeEEEEEecCC--CCCcceEE
Q psy3833 991 KRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNL-----SQGKFIIKLEVPAA--DGMSEMFL 1063 (1087)
Q Consensus 991 ~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~-----~~~k~~ikl~~p~~--~~~~e~~l 1063 (1087)
++ |.+|+.||++++.-|.||+........+.+.-+.|.||.|---++- +..+||+-|.-|.. +...--||
T Consensus 170 ~~---k~WkkRyfvLr~sgLyy~~K~~sk~~r~l~~l~~L~~~~VY~~~~~kkk~kaPt~~~F~ik~~~~~~~~~~~~~~ 246 (281)
T 4gmv_A 170 GK---KSWKKRYFLLRASGIYYVPKGKAKVSRDLVCFLQLDHVNVYYGQDYRNKYKAPTDYCLVLKHPQIQKKSQYIKYL 246 (281)
T ss_dssp TS---SCEEEEEEEECSSCEEEC---------CCEEEECGGGCEEEEESSHHHHTCCSCSCEEEEECTTCCSCCTTCEEE
T ss_pred CC---CCCeEEEEEEeCCEEEEEeCCCCCccccceEEEEcCCcEEEEecccccccCCCCCcEEEEecCccCCCCCceEEE
Confidence 44 7999999999999998887543221122344568999888654432 23478888876653 23345678
Q ss_pred eccCHHHHHHHHHHhhhhhc
Q psy3833 1064 RCENEEQYASWMAACRLQLT 1083 (1087)
Q Consensus 1064 ~~~~e~qya~wmaacrl~~~ 1083 (1087)
-||||+.-.+||+|.|+|.-
T Consensus 247 caede~~~~~Wv~Air~ak~ 266 (281)
T 4gmv_A 247 CCDDVRTLHQWVNGIRIAKY 266 (281)
T ss_dssp ECSSHHHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHhh
Confidence 88999999999999999964
No 76
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=97.70 E-value=3.1e-05 Score=84.84 Aligned_cols=103 Identities=17% Similarity=0.293 Sum_probs=78.0
Q ss_pred Ccccccccee---c---ccccc---hhcccceeEEEEeceeeeeecChhhhc---CCCCceeecCCCceecccccccCce
Q psy3833 978 VPELYDYLRC---L---KPKRF---TMKAYKRLWVTCRELQLRFYKSREDAQ---HSSPINEFSLRGCEVTPDVNLSQGK 1045 (1087)
Q Consensus 978 ~p~l~~~lk~---~---~~~~~---~lk~~k~~w~~~~~~~l~~~k~~~~~~---~~~~~~~~~l~gcev~pdv~~~~~k 1045 (1087)
.+.-++||.. . |.+|. ..+.+|+||||++++.|.|||++.... ...|...|+|.||.|.+.-+=+++|
T Consensus 10 ~v~k~G~L~rK~~l~~~k~~K~~~~~~r~Wkk~w~VLkg~~L~fYKde~~~~~~~~~~p~~~I~L~ga~v~~a~d~~kKk 89 (279)
T 3a8n_A 10 TVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVPEHPKKD 89 (279)
T ss_dssp CCSCEEEEEEEEEEEEETTTEEECCCCCCCEEEEEEEETTEECCBCCC--------CCCSSCCBCCSCEECCCTTSSSSC
T ss_pred ceeEEEEEEEEEEecccCCcccCCccCCCCeEEEEEEeCCEEEEEecccccccccccCCCceEeccCcEEEeccccCCCC
Confidence 3456688842 2 22233 568999999999999999999976532 1346667999999999777777888
Q ss_pred eEEEEEecCCCCCcceEEeccCHHHHHHHHHHhhhhhc
Q psy3833 1046 FIIKLEVPAADGMSEMFLRCENEEQYASWMAACRLQLT 1083 (1087)
Q Consensus 1046 ~~ikl~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~ 1083 (1087)
++++|..+ ..+|.++.++|+++--.|+.|.+.|+.
T Consensus 90 ~vF~L~t~---~g~~yLFQA~s~eEm~~WI~aI~~a~~ 124 (279)
T 3a8n_A 90 FVFCLSNS---LGDAFLFQTTSQTELENWITAIHSACA 124 (279)
T ss_dssp SCCCEEET---TTEEEECCCSCHHHHHHHHHHHHHHHH
T ss_pred cEEEEEcC---CCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 88888755 456788899999999999999988764
No 77
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=97.56 E-value=0.00014 Score=78.77 Aligned_cols=103 Identities=18% Similarity=0.248 Sum_probs=75.2
Q ss_pred CCccccccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCCcee-ecCCCceecccccccC-----ceeEEEE
Q psy3833 977 HVPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINE-FSLRGCEVTPDVNLSQ-----GKFIIKL 1050 (1087)
Q Consensus 977 ~~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~-~~l~gcev~pdv~~~~-----~k~~ikl 1050 (1087)
..|++++||.+=-+++ |.+|+.||++++.-|.|||... +....-++. +.|.++.|-.-++-.. .+||+-|
T Consensus 130 ~~P~~~G~L~~ke~~~---K~WkkRyfvLr~sgLy~~~k~~-sk~~r~l~~~~~L~~~~vy~~~~~kKk~kaPt~~~F~i 205 (256)
T 3hk0_A 130 SSPEIQGFLHVKELGK---KSWKKLYVCLRRSGLYCSTKGT-SAAPRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCI 205 (256)
T ss_dssp SCEEEEEEEEEECTTS---SCEEEEEEEEETTEEEEESSTT-CCCGGGEEEEECCTTEEEEEESSTHHHHCCSSSEEEEE
T ss_pred CCCcceeEEEEecCCC---CcceEEEEEEeCCEEEEEecCC-CCccccceEEEEcCCCEEEEecccccccCCCCCCEEEE
Confidence 5899999998665554 8999999999999998887543 332222443 4899998866554322 1588888
Q ss_pred EecCC-CC-CcceEEeccCHHHHHHHHHHhhhhhc
Q psy3833 1051 EVPAA-DG-MSEMFLRCENEEQYASWMAACRLQLT 1083 (1087)
Q Consensus 1051 ~~p~~-~~-~~e~~l~~~~e~qya~wmaacrl~~~ 1083 (1087)
..+.. .+ ..-.||-||||+.-.+||+|.|+|.-
T Consensus 206 k~~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak~ 240 (256)
T 3hk0_A 206 KPNKVRNETKELRLLCAEDEQTRTSWMTAFRLLKY 240 (256)
T ss_dssp EETTCSSCCTTCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred EcccccCCCceEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 75543 12 33478889999999999999999963
No 78
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=97.18 E-value=0.00022 Score=81.20 Aligned_cols=85 Identities=12% Similarity=0.187 Sum_probs=66.7
Q ss_pred hcccceeEEEE--eceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCCCCcceEEeccCHHHHH
Q psy3833 995 MKAYKRLWVTC--RELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYA 1072 (1087)
Q Consensus 995 lk~~k~~w~~~--~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~qya 1072 (1087)
.|.+|+-|||+ ++-.|+|||++++. +|.-.|.|.+|+++.+....+++|++.|......+.-..||.++|+++..
T Consensus 159 ~k~WkrRwFVL~~~~~~L~Yy~~~~~~---~p~g~I~L~~~~~~~~~~~~~~~~~f~I~~~~~~~~R~y~l~A~s~~e~~ 235 (386)
T 3lju_X 159 NGQFLSRKFVLTEREGALKYFNRNDAK---EPKAVMKIEHLNATFQPAKIGHPHGLQVTYLKDNSTRNIFIYHEDGKEIV 235 (386)
T ss_dssp SCCEEEEEEEEETTTTEEEEEC--------CCSEEEEGGGEEEEECHHHHTSTTCEEEEEEETTEEEEEEEECSSHHHHH
T ss_pred cCCceEEEEEEEcCCCEEEEECCCCcc---CcccEEEeeccEEEEcccccCCCceEEEEEecCCCceEEEEEcCCHHHHH
Confidence 68999999999 99999999997653 49999999999888765555688888885333334567899999999999
Q ss_pred HHHHHhhhhh
Q psy3833 1073 SWMAACRLQL 1082 (1087)
Q Consensus 1073 ~wmaacrl~~ 1082 (1087)
+|+.|.|-|.
T Consensus 236 ~Wi~aIr~a~ 245 (386)
T 3lju_X 236 DWFNALRAAR 245 (386)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhhhhcc
Confidence 9999998773
No 79
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.09 E-value=0.00012 Score=72.58 Aligned_cols=35 Identities=66% Similarity=1.112 Sum_probs=31.6
Q ss_pred cccccccCChhHHHHHHHHHhhhcCCCCchhhhccc
Q psy3833 88 KSLYLSSLNKEEQYASWMAACRLASKGRTLADSSYE 123 (1087)
Q Consensus 88 ~~l~~~~~~~eeq~a~wmaA~~la~kGkTLAdKg~E 123 (1087)
...|++|. +|+||++||+||+++++|+||||++|.
T Consensus 88 r~y~l~cd-sEeqy~~WMaA~rlAskgktma~~sy~ 122 (137)
T 2ys3_A 88 SEIYLRCQ-DEQQYARWMAGCRLASKGRTMADSSYT 122 (137)
T ss_dssp EEEEEEES-SHHHHHHHHHHHHHHHTSCCTTSTHHH
T ss_pred eEEEEECC-CHHHHHHHHHHHHHhccCcchhhhhhH
Confidence 66899866 688999999999999999999999874
No 80
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=96.71 E-value=0.0051 Score=61.87 Aligned_cols=88 Identities=8% Similarity=0.261 Sum_probs=67.5
Q ss_pred hhcccceeEEEEeceeeeeecChhhh---------c----------------C------CCC---------------cee
Q psy3833 994 TMKAYKRLWVTCRELQLRFYKSREDA---------Q----------------H------SSP---------------INE 1027 (1087)
Q Consensus 994 ~lk~~k~~w~~~~~~~l~~~k~~~~~---------~----------------~------~~~---------------~~~ 1027 (1087)
..|.++++|||+++.+|+|++.+.+. . + .+| .-.
T Consensus 13 ~~~~w~~~~fvL~~~~L~y~~e~s~~~~~~~~e~~~~~~~~~~~~~~~n~~fh~~~~~~~e~~~~~l~E~~~lG~l~kG~ 92 (150)
T 2fjl_A 13 VNHEWYPHYFVLTSSKIYYSEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQGPNPAILEPEREHLDENSPLGDLLRGV 92 (150)
T ss_dssp TTTEEEEEEEEEETTEEEECCCCSCSSCCSCCCCSCCCCCSCCCCCCSSSGGGSSCSTTSCTTCSSSCTTTTTTTCCCEE
T ss_pred CCCCceEeEEEEECCEEEEEeeccccccccCcccccccCCchhhcccchhccccCCccccchhHhcccccccccccccce
Confidence 67899999999999999999922211 0 0 011 358
Q ss_pred ecCCCceeccccc-ccCceeEEEEEecCCCCCcceEEeccCHHHHHHHHHHhhhhh
Q psy3833 1028 FSLRGCEVTPDVN-LSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAACRLQL 1082 (1087)
Q Consensus 1028 ~~l~gcev~pdv~-~~~~k~~ikl~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~ 1082 (1087)
|+|.||.|..--+ =.+++|.++|.-|.+ +..-++|-+++.++--.||.|-|=|+
T Consensus 93 IdL~gc~V~~~~~~~~~~~~vF~I~~~~~-~~~~~~laAds~Eem~dW~kaIreaa 147 (150)
T 2fjl_A 93 LDVPACQIAIRPEGKNNRLFVFSISMPSV-AQWSLDVAADSQEELQDWVKKIREVA 147 (150)
T ss_dssp ECSTTCEEEEETTCSSSCSCEEEEECTTT-SSCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred EecCccEEEeccCCCCCCceEEEEeCCCC-CCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 9999999976433 235779999987755 57779999999999999999988665
No 81
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=96.46 E-value=0.0031 Score=71.40 Aligned_cols=96 Identities=16% Similarity=0.263 Sum_probs=64.6
Q ss_pred ccceecccccchhcccceeEEEEe-ceeeeeecChhhhc--CCCCceeecCCCceecccccccCceeEEEEEecCCCCCc
Q psy3833 983 DYLRCLKPKRFTMKAYKRLWVTCR-ELQLRFYKSREDAQ--HSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMS 1059 (1087)
Q Consensus 983 ~~lk~~~~~~~~lk~~k~~w~~~~-~~~l~~~k~~~~~~--~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~ 1059 (1087)
+||+ -+.--+|.+|+-||+++ |.+|.|||++.+.. ...|+..+.+.+|++...- ..+++|+.+..|.....-
T Consensus 10 G~L~---K~g~~~k~Wk~r~fvL~~~~~l~yyk~~~~~~~~~~i~l~~~~~~~~~~~~~~--~~~~~~f~I~~~~~~~~~ 84 (446)
T 4ejn_A 10 GWLH---KRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTE--RPRPNTFIIRCLQWTTVI 84 (446)
T ss_dssp EEEE---EEETTTTEEEEEEEEEETTSBEEEESSCC-------CCCGGGBCTTCEEEEEC--SSSTTEEEEEEEETTEEE
T ss_pred eeEE---eeccccccccceEEEEeeCCEEEEEecCCCCCccCcccccCccccceeecCCC--CCCCceeEEEcCCCceee
Confidence 6665 22334889999999998 89999999988755 2347777778888874332 333445554444332333
Q ss_pred ceEEeccCHHHHHHHHHHhhhhhc
Q psy3833 1060 EMFLRCENEEQYASWMAACRLQLT 1083 (1087)
Q Consensus 1060 e~~l~~~~e~qya~wmaacrl~~~ 1083 (1087)
|-.+.++++++-.+|+.|.|-++.
T Consensus 85 ~r~~~~~~~ee~e~W~~ai~~~i~ 108 (446)
T 4ejn_A 85 ERTFHVETPEEREEWTTAIQTVAD 108 (446)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHCC
T ss_pred eeEEecCCHHHHHHHHHHHHhhhh
Confidence 446788999999999999998864
No 82
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=90.90 E-value=0.51 Score=46.44 Aligned_cols=82 Identities=10% Similarity=0.237 Sum_probs=61.0
Q ss_pred cceeEEEEeceeeeeecChhhhcCCCCce-eecCCCceecccccccCceeEEEEEecCCCCCcceEEeccCHHHHHHHHH
Q psy3833 998 YKRLWVTCRELQLRFYKSREDAQHSSPIN-EFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMA 1076 (1087)
Q Consensus 998 ~k~~w~~~~~~~l~~~k~~~~~~~~~~~~-~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~qya~wma 1076 (1087)
..||.|.|-+.-|.+=++..-+ +=.++ +|.|+|-.|..-=+..+.++++.+.=+ ..+-+.+-|.+.++|.+||+
T Consensus 45 ~eR~l~LF~~~Ll~~s~~~~~~--~f~~kgklPL~g~~V~~~ed~~~~~~aFeI~g~---~~~~i~v~~~s~eE~~~Wl~ 119 (132)
T 1v61_A 45 EERYFLLFSSVLIMLSASPRMS--GFMYQGKIPIAGMVVNRLDEIEGSDCMFEITGS---TVERIVVHCNNNQDFQEWME 119 (132)
T ss_dssp CEEEEEECSSCEEEEECSSSSS--CCEEEEEECTTTCBCSTTCSSSSSCCCEEEECS---SSCEEEECCCCSHHHHHHHH
T ss_pred eEEEEEEcCCeEEEEEecCCCc--eEEEEEEEecceeEEEeccccccCccEEEEecC---CCceEEEEeCCHHHHHHHHH
Confidence 3599999999888777654311 22443 899999998864355566777777621 24889999999999999999
Q ss_pred Hhhhhhcc
Q psy3833 1077 ACRLQLTE 1084 (1087)
Q Consensus 1077 acrl~~~~ 1084 (1087)
+.+-+++.
T Consensus 120 ~L~~~i~~ 127 (132)
T 1v61_A 120 QLNRLTKS 127 (132)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 99988764
No 83
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=89.39 E-value=1.3 Score=44.06 Aligned_cols=102 Identities=18% Similarity=0.098 Sum_probs=74.5
Q ss_pred ccccceec---ccccchhcccc-eeEEEEeceeeeee----cChhhhcCCCCceeecCCCceecccccccCceeEEEEEe
Q psy3833 981 LYDYLRCL---KPKRFTMKAYK-RLWVTCRELQLRFY----KSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEV 1052 (1087)
Q Consensus 981 l~~~lk~~---~~~~~~lk~~k-~~w~~~~~~~l~~~----k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~ 1052 (1087)
|--|+++| -|.|++-|+-. ||.|.|.|.-|... |.....+. --..+.|.|-.|..=.|-. --|+|+|+-
T Consensus 13 lvc~~~l~ev~d~~K~~~kg~qqR~~FLFND~LL~TK~~~kkk~~~~Y~--vr~~~~L~gm~V~~~e~e~-~p~~~~l~s 89 (140)
T 3qwm_A 13 LVCYCRLFEVPDPNKPQKLGLHQREIFLFNDLLVVTKIFQKKKNSVTYS--FRQSFSLYGMQVLLFENQY-YPNGIRLTS 89 (140)
T ss_dssp EEEEEEEEECSCTTSCCCTTTTEEEEEEESSCEEEEECCC---CCCCCC--CEEEECCTTEEEEEECCSS-CTTEEEEEE
T ss_pred EEEEEeeeeeccCcccccccccceEEEEecchhhheeecccCCCCCceE--EEEEeeecceEEEcccCCC-CceEEEEEe
Confidence 34566654 35666667666 99999999999885 22233332 4458889998886554433 458999998
Q ss_pred cCCCC--CcceEEeccCHHHHHHHHHHhhhhhccc
Q psy3833 1053 PAADG--MSEMFLRCENEEQYASWMAACRLQLTEN 1085 (1087)
Q Consensus 1053 p~~~~--~~e~~l~~~~e~qya~wmaacrl~~~~~ 1085 (1087)
+.+++ ..++.|.+.|++.=++|+.+.|-||.|.
T Consensus 90 ~~~G~~~k~~i~~~A~s~~ER~rwi~dL~esI~e~ 124 (140)
T 3qwm_A 90 SVPGADIKVLINFNAPNPQDRKKFTDDLRESIAEV 124 (140)
T ss_dssp CCTTSCCEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcceEEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 88754 4558999999999999999999999774
No 84
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.74 E-value=2.7 Score=41.28 Aligned_cols=105 Identities=14% Similarity=0.228 Sum_probs=68.0
Q ss_pred CCCCccccccceecccccchhcccceeEEEEece------eeeeecChhhhcC-CCCceeecCCCceeccccccc----C
Q psy3833 975 IMHVPELYDYLRCLKPKRFTMKAYKRLWVTCREL------QLRFYKSREDAQH-SSPINEFSLRGCEVTPDVNLS----Q 1043 (1087)
Q Consensus 975 ~~~~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~------~l~~~k~~~~~~~-~~~~~~~~l~gcev~pdv~~~----~ 1043 (1087)
+.+-|--+++|-+=-..||.-| +|+.||++-.+ +|=||.++|.... ..|-..|.|..|-=+--++-. .
T Consensus 8 m~e~~vk~G~L~~q~q~~fgkK-Wrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~~~~rrVIrLsdCisV~~~~~e~~~pk 86 (127)
T 2d9w_A 8 MGDGAVKQGFLYLQQQQTFGKK-WRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCLRVAEAGGEASSPR 86 (127)
T ss_dssp SCCCSSEEEEEEECBCSSSSCB-CCEEEEEEECCSSSSCCEEEEECCCSCSSSCSCCEEEECGGGEEEEEECCSCSSSCS
T ss_pred ccCccccceEEEecccchhhhh-hheeEEEEecCCCCCceeeeeeeccCccccCCCCceEEEhhhCCeEecccCccCCCC
Confidence 3445667788766544488865 99999998876 4667999988652 456679999999544333333 2
Q ss_pred ceeEEEEEecCCCCCcceEEeccCHHHHHHHHHH-hhhhhccc
Q psy3833 1044 GKFIIKLEVPAADGMSEMFLRCENEEQYASWMAA-CRLQLTEN 1085 (1087)
Q Consensus 1044 ~k~~ikl~~p~~~~~~e~~l~~~~e~qya~wmaa-crl~~~~~ 1085 (1087)
..+.+.|.-+ + .=..|-++++ +=..||.+ |++|-..+
T Consensus 87 ~~~aF~l~T~--e--r~~~laAe~~-E~~~Wi~~ic~~aF~~~ 124 (127)
T 2d9w_A 87 DTSAFFLETK--E--RLYLLAAPAA-ERGDWVQAICLLAFSGP 124 (127)
T ss_dssp SCEEEEEEES--S--CEEEEEECHH-HHHHHHHHHHHHHTSSC
T ss_pred cceEEEEEeC--C--cEEEEEeCcH-HHHHHHHHHHHHhcCCC
Confidence 3344444333 2 2345566655 78899966 77776543
No 85
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=85.50 E-value=1.7 Score=47.20 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=67.2
Q ss_pred cccceecccccchhcccceeEEEEeceeeeeecChhhhcCCCC---ceeecCCCceecccccccCceeEEEEEecCCCCC
Q psy3833 982 YDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSP---INEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGM 1058 (1087)
Q Consensus 982 ~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~~~~~---~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~ 1058 (1087)
++-+.+..++.+.-|+-.+|-|.|.|.-|.+-+.+.... ... -..+.|.+|.|+..++-...+|.|... ..+.+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~-~~~y~~k~~i~l~~~~v~e~~~~~~~~F~i~~~-~~~~~~ 283 (311)
T 1nty_A 206 QESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSG-RSKYLYKSKLFTSELGVTEHVEGDPCKFALWVG-RTPTSD 283 (311)
T ss_dssp EEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTTC-CEEEEEEEEEEGGGEEEECCCTTCTTEEEEEES-SSCCTT
T ss_pred eeeEEEEcCcccccccceeEEEeccCeEEEEEeeccCCC-CceeEEeeeeeccceeeEEccCCCCceEEEEeC-CCCCCC
Confidence 345555555544445666899999998887765432111 111 125778889888655544556665542 223334
Q ss_pred cceEEeccCHHHHHHHHHHhhhhhccc
Q psy3833 1059 SEMFLRCENEEQYASWMAACRLQLTEN 1085 (1087)
Q Consensus 1059 ~e~~l~~~~e~qya~wmaacrl~~~~~ 1085 (1087)
.++.|.|.|++.-.+||.+.+-|+.|+
T Consensus 284 ~~~~l~a~s~~ek~~W~~~i~~~i~e~ 310 (311)
T 1nty_A 284 NKIVLKASSIENKQDWIKHIREVIQER 310 (311)
T ss_dssp TCEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhhh
Confidence 567799999999999999999998774
No 86
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=84.38 E-value=3 Score=39.55 Aligned_cols=80 Identities=13% Similarity=0.000 Sum_probs=55.4
Q ss_pred ceeEEEEeceeeeeecChhhhcCCCCceeecCCCceec--ccccccCceeEEEEEecCCCCCcceEEeccCHHHHHHHHH
Q psy3833 999 KRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVT--PDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMA 1076 (1087)
Q Consensus 999 k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~--pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~qya~wma 1076 (1087)
++|.|.|.|.=|...+.......-.-...++|.+.+|+ ||-. .-|-+++|..+ .++..++|++++.-.+||.
T Consensus 27 ~v~~FLfND~Ll~a~~~~~~~~~~~~~~~~~L~~~~v~d~~d~~--~~~n~f~i~~~----~~s~~~~aes~~eK~~Wl~ 100 (113)
T 1zc3_B 27 RVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDNP--PMKDMFKLLMF----PESRIFQAENAKIKREWLE 100 (113)
T ss_dssp EEEEEEESSEEEEEEEECCTTSCEEEEEEEETTTCEEEEECCBT--TBSSEEEEEET----TEEEEEECSSHHHHHHHHH
T ss_pred cEEEEecCCEEEEEEEeccCcccEEEEEEEEcccCEEEECCCCc--ccceEEEEEeC----CceEEEEcCCHHHHHHHHH
Confidence 46999999998888874221110001224688888886 5533 34566677653 3568999999999999999
Q ss_pred Hhhhhhcc
Q psy3833 1077 ACRLQLTE 1084 (1087)
Q Consensus 1077 acrl~~~~ 1084 (1087)
++|=|+++
T Consensus 101 ~~~~a~~~ 108 (113)
T 1zc3_B 101 VLEETKRA 108 (113)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 87
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}
Probab=65.52 E-value=25 Score=37.47 Aligned_cols=101 Identities=15% Similarity=0.290 Sum_probs=68.3
Q ss_pred CCCCccccccceecccccchhcccceeEEEEec-------eeeeeecChhhhcCC-CCceeecCCCc-eecccccccCce
Q psy3833 975 IMHVPELYDYLRCLKPKRFTMKAYKRLWVTCRE-------LQLRFYKSREDAQHS-SPINEFSLRGC-EVTPDVNLSQGK 1045 (1087)
Q Consensus 975 ~~~~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~-------~~l~~~k~~~~~~~~-~~~~~~~l~gc-ev~pdv~~~~~k 1045 (1087)
+|+.--..+|+|++.-| .||+-|+|++- ..|-+||++.|..++ .+=+.+.|..| -+.|-..+.++.
T Consensus 5 ~~~~~v~eg~vk~r~~K-----kWk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~~~KaslsL~~~~GlE~g~~ldk~s 79 (224)
T 3ml4_A 5 MTEAALVEGQVKLRDGK-----KWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPALPYEGLA 79 (224)
T ss_dssp --CCCSEEEEEEEC--------CCEEEEEEEECSSTTSSCEEEEEESSSHHHHSCCCCSEEEEECCEEEEEEEEEETTEE
T ss_pred cccceeEEEeeeeecCC-----ceeeEEEEEEcCCCchheEEEEEEcChhhhhcCCcccceeehHHhcCccccccccCcc
Confidence 34444566999988655 79999999875 378899999986643 33445777653 345555666777
Q ss_pred eEEEEEecCCCCCcceEEeccCHHHHHHHHHHhhhhhcc
Q psy3833 1046 FIIKLEVPAADGMSEMFLRCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1046 ~~ikl~~p~~~~~~e~~l~~~~e~qya~wmaacrl~~~~ 1084 (1087)
+.|-++-.. +=+-|-||++++--.|-+-++..+-|
T Consensus 80 ~TlAIIc~d----~~~vLAFds~e~l~~W~~~l~~slGe 114 (224)
T 3ml4_A 80 HTLAIICLS----QAVMLGFDSHEAMCAWDTRIRYALGE 114 (224)
T ss_dssp EEEEEEESS----CEEEEECSSHHHHHHHHHHHHHHTSS
T ss_pred cEEEEEecC----cEEEEEeCCHHHHHHHHHHHhhccCC
Confidence 766665332 23579999999999999988865533
No 88
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=64.16 E-value=5.1 Score=39.09 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=42.7
Q ss_pred ceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCccccc
Q psy3833 490 DIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCI 566 (1087)
Q Consensus 490 ~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~Ci 566 (1087)
+||.|+| |+.. .++..+++.+.++|++ .+|+.+++. ++-+.+...++|.++.+|.|-.++
T Consensus 77 ~vDlvvi--~vp~-----~~~~~vv~~~~~~gi~---~i~~~~g~~-------~~~l~~~a~~~Gi~vvGpnc~gv~ 136 (144)
T 2d59_A 77 KIEVVDL--FVKP-----KLTMEYVEQAIKKGAK---VVWFQYNTY-------NREASKKADEAGLIIVANRCMMRE 136 (144)
T ss_dssp CCSEEEE--CSCH-----HHHHHHHHHHHHHTCS---EEEECTTCC-------CHHHHHHHHHTTCEEEESCCHHHH
T ss_pred CCCEEEE--EeCH-----HHHHHHHHHHHHcCCC---EEEECCCch-------HHHHHHHHHHcCCEEEcCCchhhc
Confidence 4888888 4555 4555666666666764 478998874 344567888999999999986554
No 89
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=52.54 E-value=21 Score=40.31 Aligned_cols=79 Identities=16% Similarity=0.267 Sum_probs=50.0
Q ss_pred eeEEEEeceeeeeecChhhhcCCCCceeecCCCceecccccccCceeEEEEEecCCCCCcceEEeccCHHHHHHHHHHhh
Q psy3833 1000 RLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAACR 1079 (1087)
Q Consensus 1000 ~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~qya~wmaacr 1079 (1087)
+|-|.|.|.-|.+-+.+...+. --..|.|.++.|...++ ...+|.+++.-| ...+.|.|.+++.-.+||.+.+
T Consensus 261 r~~fLF~d~Ll~~k~~~~~~y~--~k~~i~L~~l~v~~~~~-~~~~~~f~i~~~----~~~~~l~a~s~~ek~~W~~~i~ 333 (434)
T 3mpx_A 261 RHLFLMNDVLLYTYPQKDGKYR--LKNTLAVANMKVSRPVM-EKVPYALKIETS----ESCLMLSASSCAERDEWYGCLS 333 (434)
T ss_dssp EEEEEESSEEEEEEECTTSCEE--EEEEEEC-----CCCCC-TTSCSEEEEECS----SCEEEEECSSHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEecCCCeEE--EEEEEEcCCcEEEecCC-CCCCeeEEEecC----CeEEEEecCCHHHHHHHHHHHH
Confidence 6777899977777655543331 23478899999874332 356788887432 2368999999999999999999
Q ss_pred hhhccc
Q psy3833 1080 LQLTEN 1085 (1087)
Q Consensus 1080 l~~~~~ 1085 (1087)
-|+.+.
T Consensus 334 ~ai~e~ 339 (434)
T 3mpx_A 334 RALPED 339 (434)
T ss_dssp HC----
T ss_pred HHHHHH
Confidence 998764
No 90
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=49.47 E-value=7.6 Score=37.78 Aligned_cols=58 Identities=17% Similarity=0.162 Sum_probs=40.8
Q ss_pred ceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCccc
Q psy3833 490 DIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGP 564 (1087)
Q Consensus 490 ~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~ 564 (1087)
+||.++| |+.. .++..+++.+.++|++ .+|+.+++. ++-+.+..+++|.++.+|.|-.
T Consensus 70 ~vDlavi--~vp~-----~~~~~v~~~~~~~gi~---~i~~~~g~~-------~~~~~~~a~~~Gir~vgpnc~g 127 (140)
T 1iuk_A 70 PVDILDV--FRPP-----SALMDHLPEVLALRPG---LVWLQSGIR-------HPEFEKALKEAGIPVVADRCLM 127 (140)
T ss_dssp CCSEEEE--CSCH-----HHHTTTHHHHHHHCCS---CEEECTTCC-------CHHHHHHHHHTTCCEEESCCHH
T ss_pred CCCEEEE--EeCH-----HHHHHHHHHHHHcCCC---EEEEcCCcC-------HHHHHHHHHHcCCEEEcCCccc
Confidence 4888887 5555 4555556666556764 479998885 2445677888999999999754
No 91
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=49.03 E-value=21 Score=39.76 Aligned_cols=93 Identities=33% Similarity=0.439 Sum_probs=57.5
Q ss_pred CCCCCEEEEccccCcCCCCcEEEEEEecCCeEEEEEEEecCCHHHH--HHHHhCCCC-----------------Cchhhh
Q psy3833 832 IQPNDRISLVGLKDLAPGKPVTAQIKHADGKVEEIKLNHSMNEQQI--TWFQAELPT-----------------RIPAWL 892 (1087)
Q Consensus 832 l~~gD~i~I~~l~~l~pg~~v~v~v~~~dG~~~~~~l~~~lt~~E~--e~~~aGGiL-----------------n~sr~l 892 (1087)
++.|+.+... .+.+.+.|.-.||+...+.+.-.-|..|+ .+.+.=|+. +...||
T Consensus 73 ~~~~~~l~~~-------~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL 145 (371)
T 3ivf_A 73 LRNGDTMEYR-------KKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWL 145 (371)
T ss_dssp CCTTCEEEEE-------ECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CC
T ss_pred CCCCceeecc-------CceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHH
Confidence 6667776654 13456667777888777777643333322 112222222 234799
Q ss_pred cccccccccccccCceeeeecceeeeeccC-ccccceeeee
Q psy3833 893 DSSLSIYEQGVKEFDTLRLRFKFYSIYDLN-AKTDAVQVNL 932 (1087)
Q Consensus 893 ~ss~sl~~q~~~E~~~l~lrFkyy~f~d~n-~K~d~vri~~ 932 (1087)
+..+.+.+|++.+.-.|.+|-||| |.+.+ +..|.+..++
T Consensus 146 ~~~k~l~~q~~~~~~~l~frvKf~-~~d~~~~~~D~~~~~l 185 (371)
T 3ivf_A 146 DHGRTLREQGVEEHETLLLRRKFF-YSDQNVDSRDPVQLNL 185 (371)
T ss_dssp CTTSBTGGGTCCTTCEEEEEECCC-CBCSSCBTTCHHHHHH
T ss_pred hcCchhHhhCCCCCceEEEEEEEe-cCCccccCCCHHHHHH
Confidence 999999999998888899998999 54433 3457665443
No 92
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=46.99 E-value=10 Score=37.07 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=37.3
Q ss_pred ceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCccc
Q psy3833 490 DIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGP 564 (1087)
Q Consensus 490 ~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~ 564 (1087)
++|.|+| |+.. .++..+++++.+.|++ .+|+.+++. .+-+.+..+++|.++.+|.|-.
T Consensus 70 ~~Dlvii--~vp~-----~~v~~v~~~~~~~g~~---~i~i~~~~~-------~~~l~~~a~~~Gi~~igpnc~g 127 (145)
T 2duw_A 70 KVDMVDV--FRNS-----EAAWGVAQEAIAIGAK---TLWLQLGVI-------NEQAAVLAREAGLSVVMDRCPA 127 (145)
T ss_dssp CCSEEEC--CSCS-----THHHHHHHHHHHHTCC---EEECCTTCC-------CHHHHHHHHTTTCEEECSCCHH
T ss_pred CCCEEEE--EeCH-----HHHHHHHHHHHHcCCC---EEEEcCChH-------HHHHHHHHHHcCCEEEcCCeee
Confidence 4787777 6665 2444444444444542 378887765 3345677889999999999753
No 93
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=46.75 E-value=33 Score=37.87 Aligned_cols=87 Identities=9% Similarity=0.167 Sum_probs=57.0
Q ss_pred cccceeEEEEeceeeeeecChhhhcC-CCCc----eeecCCCceecccccccCceeEEEEEecCCC-CCcceEEeccCHH
Q psy3833 996 KAYKRLWVTCRELQLRFYKSREDAQH-SSPI----NEFSLRGCEVTPDVNLSQGKFIIKLEVPAAD-GMSEMFLRCENEE 1069 (1087)
Q Consensus 996 k~~k~~w~~~~~~~l~~~k~~~~~~~-~~~~----~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~-~~~e~~l~~~~e~ 1069 (1087)
|.-.+|.|.|.|.-|.+-+.+..... ..+. ..+.|..+.|..+++=....|.|... .++ +...+.|.|.|++
T Consensus 227 ~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~~~~~~~F~i~~~--~~~~~~~~~~l~a~s~~ 304 (354)
T 2rgn_B 227 RGRERRVFLFEQIIIFSEALGGGVRGGTQPGYVYKNSIKVSCLGLEGNLQGDPCRFALTSR--GPEGGIQRYVLQAADPA 304 (354)
T ss_dssp CCCEEEEEEESSEEEEEEECC--------CCEEEEEEEEGGGEEEEESGGGCTTEEEEEEE--CSSSCEEEEEEEESSHH
T ss_pred CCceEEEEEeCCcEEEEEeccCCCCCCCCCceEEcceeeccceeeeeccCCCCceEEEEec--CCCCCceEEEEECCCHH
Confidence 34458999999998888765432110 0011 25678888887655434455655543 344 4567789999999
Q ss_pred HHHHHHHHhhhhhcc
Q psy3833 1070 QYASWMAACRLQLTE 1084 (1087)
Q Consensus 1070 qya~wmaacrl~~~~ 1084 (1087)
.-.+||.+.+-|+.+
T Consensus 305 ek~~W~~~i~~ai~~ 319 (354)
T 2rgn_B 305 ISQAWIKHVAQILES 319 (354)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999877653
No 94
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=44.37 E-value=43 Score=36.66 Aligned_cols=84 Identities=12% Similarity=0.159 Sum_probs=57.7
Q ss_pred cceeEEEEeceeeeeecChhhh-c---CCCC---ceeecCCCceecccccccCceeEEEEEecCCCCCcceEEeccCHHH
Q psy3833 998 YKRLWVTCRELQLRFYKSREDA-Q---HSSP---INEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQ 1070 (1087)
Q Consensus 998 ~k~~w~~~~~~~l~~~k~~~~~-~---~~~~---~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~q 1070 (1087)
-.+|-|.|.|.-|.+-+.+... . ++.. -..+.|.+|.|....+-..-++.++|.-+. ...+.|.|.|+++
T Consensus 260 ~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~d~~~~~~~F~i~~~~---~~~~~l~a~s~~e 336 (354)
T 1dbh_A 260 HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKD---ENSVIFSAKSAEE 336 (354)
T ss_dssp SCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCEEEECCCSSSCCSEEEECCTT---SCCEEEECSSHHH
T ss_pred ceEEEEEeCCEEEEEecCCCCCCCCCCCCcceeEEEEEeccceEEEeCCcccccCccEEEecCC---CCEEEEEeCCHHH
Confidence 4488899999888776653100 0 0111 147889999987655444556666665332 3568899999999
Q ss_pred HHHHHHHhhhhhcc
Q psy3833 1071 YASWMAACRLQLTE 1084 (1087)
Q Consensus 1071 ya~wmaacrl~~~~ 1084 (1087)
=.+||.+.+-|.+.
T Consensus 337 k~~W~~~i~~~~~~ 350 (354)
T 1dbh_A 337 KNNWMAALISLQYR 350 (354)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988763
No 95
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=43.85 E-value=21 Score=34.61 Aligned_cols=60 Identities=25% Similarity=0.326 Sum_probs=40.5
Q ss_pred ceeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCccccc
Q psy3833 490 DIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCI 566 (1087)
Q Consensus 490 ~Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGCg~Ci 566 (1087)
.+|.|+| |+.. ..+..+++++.++|++ .+|+.+++. .+-+.+..++.|.++.+|.|-.-+
T Consensus 69 ~vDlvii--~vp~-----~~v~~v~~~~~~~g~~---~i~~~~~~~-------~~~l~~~a~~~Gi~~igpnc~g~~ 128 (138)
T 1y81_A 69 DVDVIVF--VVPP-----KVGLQVAKEAVEAGFK---KLWFQPGAE-------SEEIRRFLEKAGVEYSFGRCIMVE 128 (138)
T ss_dssp TCCEEEE--CSCH-----HHHHHHHHHHHHTTCC---EEEECTTSC-------CHHHHHHHHHHTCEEECSCCHHHH
T ss_pred CCCEEEE--EeCH-----HHHHHHHHHHHHcCCC---EEEEcCccH-------HHHHHHHHHHCCCEEEcCCcceEE
Confidence 4888877 6654 4555556665555653 388888773 233566778899999999976544
No 96
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=41.38 E-value=55 Score=40.69 Aligned_cols=78 Identities=24% Similarity=0.422 Sum_probs=49.5
Q ss_pred ccceeEEEEeceeeeeecChhhhcCCCCceeecCCCceeccccc--ccCceeEEEEEecCCCC----CcceEEeccCHHH
Q psy3833 997 AYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVN--LSQGKFIIKLEVPAADG----MSEMFLRCENEEQ 1070 (1087)
Q Consensus 997 ~~k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~--~~~~k~~ikl~~p~~~~----~~e~~l~~~~e~q 1070 (1087)
+-|.||||+.--+|+.||..|+.. .-..+.|.|.-+. |+. .-+.|+..-|+=|..-. ..-+=|-|++-+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 632 (772)
T 3zvr_A 557 GSKEYWFVLTAENLSWYKDDEEKE---KKYMLSVDNLKLR-DVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEE 632 (772)
T ss_dssp -CCEEEEEEESSEEEEESSTTCCC---EEEEEECTTEEEE-EC-------CEEEEEEETTSSCSBTTBSEEEEEESSHHH
T ss_pred CCccceeeccccccccccchhhhc---ccccccccccccc-hhhhccccccccccccCCccccccchhhhhhhhcccccc
Confidence 678999999999999999855433 3345566555422 111 12355655555444311 2356689999999
Q ss_pred HHHHHHHh
Q psy3833 1071 YASWMAAC 1078 (1087)
Q Consensus 1071 ya~wmaac 1078 (1087)
-..|+|..
T Consensus 633 ~~~~~~~~ 640 (772)
T 3zvr_A 633 VDSWKASF 640 (772)
T ss_dssp HHHHHHHH
T ss_pred chhhHHhh
Confidence 99999987
No 97
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=40.54 E-value=45 Score=37.51 Aligned_cols=83 Identities=14% Similarity=0.062 Sum_probs=54.4
Q ss_pred ccceeEEEEeceeeeeecChh--hhcCCCCceeecCCCceecccccccC------ceeEEEEEecCCCCCcceEEeccCH
Q psy3833 997 AYKRLWVTCRELQLRFYKSRE--DAQHSSPINEFSLRGCEVTPDVNLSQ------GKFIIKLEVPAADGMSEMFLRCENE 1068 (1087)
Q Consensus 997 ~~k~~w~~~~~~~l~~~k~~~--~~~~~~~~~~~~l~gcev~pdv~~~~------~k~~ikl~~p~~~~~~e~~l~~~~e 1068 (1087)
.-.+|-|.|.|.-|.+-+... +.+. --..|.|.+|.|....+-.. -+++++|.-+. +...+.|.|.|+
T Consensus 273 ~~~r~~fLF~d~Ll~~k~~~~~~~~~~--~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~~~~--~~~~~~l~a~s~ 348 (402)
T 2dfk_A 273 NQQRVFFLFDHQMVLCKKDLIRRDILY--YKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKE--TEEVHLFFAKKL 348 (402)
T ss_dssp CEEEEEEEETTEEEEEEECSSCTTCEE--EEEEEEGGGEEEEECCSEECSSSCCEESSEEEEEESS--SSCEEEEECSSH
T ss_pred eEEEEEEeeCCEEEEEEeccccCCceE--EeeeeeccceEEEecCCCCccccccccceeEEEEECC--CCeEEEEEeCCH
Confidence 345889999999888765421 1110 11367889998875433221 23456665443 345677889999
Q ss_pred HHHHHHHHHhhhhhc
Q psy3833 1069 EQYASWMAACRLQLT 1083 (1087)
Q Consensus 1069 ~qya~wmaacrl~~~ 1083 (1087)
+.=.+||.+.+-|+.
T Consensus 349 ~eK~~Wi~~i~~a~~ 363 (402)
T 2dfk_A 349 EEKIRWLRAFREERK 363 (402)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987764
No 98
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=36.37 E-value=55 Score=36.06 Aligned_cols=84 Identities=21% Similarity=0.254 Sum_probs=54.8
Q ss_pred ccceeEEEEeceeeeeecChhhh--cCCCCc----eeecCCCceecccccccCceeEEEEEecCCCCCcceEEeccCHHH
Q psy3833 997 AYKRLWVTCRELQLRFYKSREDA--QHSSPI----NEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQ 1070 (1087)
Q Consensus 997 ~~k~~w~~~~~~~l~~~k~~~~~--~~~~~~----~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~q 1070 (1087)
.-.+|-|.|.|.-|.+-+.+... ....+. ..+.|..|.|+-+++-...+|.|.. .. +.....|.|.|+++
T Consensus 237 ~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~~y~~k~~i~l~~~~v~e~~~~~~~~F~i~~--~~--~~~~~~l~a~s~~e 312 (353)
T 1kz7_A 237 PMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENVKGDTKKFEIWY--NA--REEVYIIQAPTPEI 312 (353)
T ss_dssp CEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEECCBTTBTTEEEEEE--TT--TTEEEEEECSSHHH
T ss_pred cceeEEEEECCEEEEEEeccccccCCCCCCeEEEEEEeEcccceeeEcCCCCCceEEEEE--CC--CCcEEEEECCCHHH
Confidence 34588999999988776653211 000011 2467778888766654556666643 21 22345688999999
Q ss_pred HHHHHHHhhhhhcc
Q psy3833 1071 YASWMAACRLQLTE 1084 (1087)
Q Consensus 1071 ya~wmaacrl~~~~ 1084 (1087)
-.+||.+.+-|+.+
T Consensus 313 k~~W~~~i~~ai~~ 326 (353)
T 1kz7_A 313 KAAWVNAIRKVLTS 326 (353)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 99
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=35.58 E-value=20 Score=37.37 Aligned_cols=50 Identities=22% Similarity=0.467 Sum_probs=32.0
Q ss_pred hcccccCCcccccCCCCCCCCccccccceecccccchhcccceeEEEEeceeeeeecChhhhc
Q psy3833 958 DLQVTLEGSHISLASPDIMHVPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQ 1020 (1087)
Q Consensus 958 ~Lev~~eg~~~~~~~~~~~~~p~l~~~lk~~~~~~~~lk~~k~~w~~~~~~~l~~~k~~~~~~ 1020 (1087)
.|||-++|.+ -|.-.+||--- -=.+|+.|+=|||+|+-.|.||+++++..
T Consensus 10 ~~~~~~~~~~----------~~~~~g~l~~~---~~~~~~w~~rw~vl~~~~~~~~~~~~~~~ 59 (228)
T 3tfm_A 10 GLEVLFQGPG----------SPYFHSFLYMN---GGLMNSWKRRWCVLKDETFLWFRSKQEAL 59 (228)
T ss_dssp ---------------------CCEEEEEEEC---CTTTCCCEEEEEEEETTEEEEESSCCCSS
T ss_pred ceEEEecCCC----------CCceEEEEeec---CcccccceEEEEEEeCCEEEEeccCCCcc
Confidence 4666666554 37777887432 56789999999999999999999877644
No 100
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=33.47 E-value=84 Score=35.83 Aligned_cols=83 Identities=17% Similarity=0.116 Sum_probs=55.6
Q ss_pred ccceeEEEEeceeeeeecChh--hhcCCCCceeecCCCceeccccccc------CceeEEEEEecCCCCCcceEEeccCH
Q psy3833 997 AYKRLWVTCRELQLRFYKSRE--DAQHSSPINEFSLRGCEVTPDVNLS------QGKFIIKLEVPAADGMSEMFLRCENE 1068 (1087)
Q Consensus 997 ~~k~~w~~~~~~~l~~~k~~~--~~~~~~~~~~~~l~gcev~pdv~~~------~~k~~ikl~~p~~~~~~e~~l~~~~e 1068 (1087)
.-.+|-|.|.|.-|.+-+... +.+ .--..|.|.+|.|..-.+-. .-+++++|.-+. +...+.|.|.++
T Consensus 350 ~~~r~~fLF~d~Ll~~k~~~~~~~~~--~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~~~~--~~~~~~l~a~s~ 425 (466)
T 2pz1_A 350 SQQRMFFLFDHQLIYCKKDLLRRDVL--YYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGA--TGDSHLLCTRKP 425 (466)
T ss_dssp EEEEEEEEETTEEEEEEECSSCTTCE--EEEEEEETTTCEEEECCSBSCCSSCCCBCEEEEEECSS--SCCEEEEEESSH
T ss_pred eeEEEEEEECCEEEEEEeccccCCce--EEeeeeeccceEEEeCCCCcccccccccceeEEEEeCC--CCeEEEEEeCCH
Confidence 345888999999888765421 111 01136889999987543322 234666766443 345677889999
Q ss_pred HHHHHHHHHhhhhhc
Q psy3833 1069 EQYASWMAACRLQLT 1083 (1087)
Q Consensus 1069 ~qya~wmaacrl~~~ 1083 (1087)
+.=.+||.+.+-|+.
T Consensus 426 ~eK~~W~~~i~~a~~ 440 (466)
T 2pz1_A 426 EQKQRWLKAFARERE 440 (466)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988765
No 101
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=31.47 E-value=26 Score=33.62 Aligned_cols=54 Identities=19% Similarity=0.251 Sum_probs=38.4
Q ss_pred eeEEEEeccCCCChHHHHHHHHHHHHhHhCCCCCCCCEEEecCcHHHHHHHHHcChHHHHHhcCcEEecCCc
Q psy3833 491 IKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANAC 562 (1087)
Q Consensus 491 Id~vfIGSCTn~~~~dl~aAA~ilk~a~~~~~~~~v~~~v~PgS~~v~~~l~~~G~~~~l~~aGa~i~~pGC 562 (1087)
||.|.| |+.. ..+..+++.+.++|++ .+|+.||.. ++-+.+..+++|.++.+ .|
T Consensus 59 vDlavi--~~p~-----~~v~~~v~e~~~~g~k---~v~~~~G~~-------~~e~~~~a~~~Girvv~-nC 112 (122)
T 3ff4_A 59 VDTVTL--YINP-----QNQLSEYNYILSLKPK---RVIFNPGTE-------NEELEEILSENGIEPVI-GC 112 (122)
T ss_dssp CCEEEE--CSCH-----HHHGGGHHHHHHHCCS---EEEECTTCC-------CHHHHHHHHHTTCEEEE-SC
T ss_pred CCEEEE--EeCH-----HHHHHHHHHHHhcCCC---EEEECCCCC-------hHHHHHHHHHcCCeEEC-Cc
Confidence 677777 5665 4556666666666764 389999984 34567888999999995 44
No 102
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=27.47 E-value=1.5e+02 Score=33.14 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=51.1
Q ss_pred ceeEEEEeceeeeeecChhhhcCCCCceeecCCCceeccccccc----CceeEEEEEecCCCCCcceEEeccCHHHHHHH
Q psy3833 999 KRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLS----QGKFIIKLEVPAADGMSEMFLRCENEEQYASW 1074 (1087)
Q Consensus 999 k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~----~~k~~ikl~~p~~~~~~e~~l~~~~e~qya~w 1074 (1087)
.+|-|.|.|.-|-+-+ +.+.+. --..+.|.++.|....+-. .-++.++|.-. .+...+.|.|.|+++-.+|
T Consensus 252 ~~~~fLF~d~Ll~~k~-k~~~y~--~k~~i~l~~~~v~~~~~~~~~~~~~~~~F~i~~~--~~~~~~~l~a~s~~ek~~W 326 (406)
T 2vrw_B 252 DRYAFLLDKALLICKR-RGDSYD--LKASVNLHSFQVRDDSSGERDNKKWSHMFLLIED--QGAQGYELFFKTRELKKKW 326 (406)
T ss_dssp EEEEEEESSEEEEEEE-ETTEEE--EEEEEETTTEEEEC--------CTTCEEEEEEET--TCSCEEEEEESSHHHHHHH
T ss_pred eEEEEecCCEEEEEEe-cCCceE--EEEEecccceeeeecCCCCccCCccceeeEEEec--CCCceEEEeCCCHHHHHHH
Confidence 4788899998776643 333331 1136788999887554332 12355555432 2345578899999999999
Q ss_pred HHHhhhhhcc
Q psy3833 1075 MAACRLQLTE 1084 (1087)
Q Consensus 1075 maacrl~~~~ 1084 (1087)
|.+.+-|+..
T Consensus 327 ~~~i~~ai~~ 336 (406)
T 2vrw_B 327 MEQFEMAISN 336 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 103
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=27.15 E-value=78 Score=34.48 Aligned_cols=83 Identities=7% Similarity=0.050 Sum_probs=52.7
Q ss_pred ccceeEEEEeceeeeeecChhhh---cC--CCCceeecCCCceecccccc---------------cCceeEEEEEecCCC
Q psy3833 997 AYKRLWVTCRELQLRFYKSREDA---QH--SSPINEFSLRGCEVTPDVNL---------------SQGKFIIKLEVPAAD 1056 (1087)
Q Consensus 997 ~~k~~w~~~~~~~l~~~k~~~~~---~~--~~~~~~~~l~gcev~pdv~~---------------~~~k~~ikl~~p~~~ 1056 (1087)
+-.+|-|.|.|.-|.+-+.+... +. .. .|.|.+|.|..-.+- ...++.++|....+.
T Consensus 243 ~~~~~~fLF~d~Ll~~k~~~~~~~~~~~v~k~---~i~l~~l~v~~~~d~~~~~~~s~~g~~~~~~~~~~~F~i~~~~~~ 319 (346)
T 2z0q_A 243 GVKLHVFLFQEVLVITRAVTHNEQLCYQLYRQ---PIPVKDLTLEDLQDGEVRLGGSLRGAFSNNERVKNFFRVSFKNGS 319 (346)
T ss_dssp SCEEEEEEESSEEEEEEEEEETTEEEEEESSC---CEEGGGCEEEECCTTTSCCCSCC--CCSHHHHTSSEEEEEECCGG
T ss_pred CcEEEEEECCCcEEEEEEeccCCceeeeeecC---CcchhhceeeecCCCccccCccccccccCCcccccceEEEEecCC
Confidence 44588899999887776532211 10 12 357777777643321 123566666544332
Q ss_pred CCcceEEeccCHHHHHHHHHHhhhhh
Q psy3833 1057 GMSEMFLRCENEEQYASWMAACRLQL 1082 (1087)
Q Consensus 1057 ~~~e~~l~~~~e~qya~wmaacrl~~ 1082 (1087)
.....-|.|.|++.-.+||.+.+-|+
T Consensus 320 ~~~~~~l~a~s~~ek~~W~~~i~~ai 345 (346)
T 2z0q_A 320 QSQTHSLQANDTFNKQQWLNCIRQAK 345 (346)
T ss_dssp GCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHhh
Confidence 34567789999999999999998876
No 104
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=20.71 E-value=1.1e+02 Score=36.06 Aligned_cols=81 Identities=15% Similarity=0.138 Sum_probs=53.3
Q ss_pred ceeEEEEeceeeeeecChhhhcCCCCceeecCCCceeccccccc----CceeEEEEEecCCCCCcceEEeccCHHHHHHH
Q psy3833 999 KRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLS----QGKFIIKLEVPAADGMSEMFLRCENEEQYASW 1074 (1087)
Q Consensus 999 k~~w~~~~~~~l~~~k~~~~~~~~~~~~~~~l~gcev~pdv~~~----~~k~~ikl~~p~~~~~~e~~l~~~~e~qya~w 1074 (1087)
.+|-|.|.|.-|.+-+. .+.+. --..|.|.+|.|....+-. .-++.++|... .|...+-|.|.+++.-.+|
T Consensus 424 ~r~~fLF~d~Ll~~k~~-~~~y~--~k~~i~L~~~~v~~~~~~~~~~~~~~~~f~i~~~--~~~~~~~L~A~S~eeK~~W 498 (587)
T 3ky9_A 424 DRYAFLLDKALLICKRR-GDSYD--LKDFVNLHSFQVRDDSSGDRDNKKWSHMFLLIED--QGAQGYELFFKTRELKKKW 498 (587)
T ss_dssp EEEEEEETTEEEEEEEE-TTEEE--EEEEEEGGGEEEEEC-----CCCTTCEEEEEEET--TC---CEEEESSHHHHHHH
T ss_pred eEEEEEECCEEEEEEec-CCEEE--eeeeechhhceeeecCCCCcccccccceeEEEEc--CCCceEEEEeCCHHHHHHH
Confidence 37778999988877544 33331 2347889999887655432 23455666543 4556788999999999999
Q ss_pred HHHhhhhhcc
Q psy3833 1075 MAACRLQLTE 1084 (1087)
Q Consensus 1075 maacrl~~~~ 1084 (1087)
|.+.+-|+..
T Consensus 499 i~~I~~ai~~ 508 (587)
T 3ky9_A 499 MEQFEMAISN 508 (587)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 9999998853
No 105
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=20.39 E-value=2.4e+02 Score=31.48 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=54.5
Q ss_pred ceeEEEEeceeeeeecChhhhc---CC---------CC--ceeecCCCceecccccccCceeEEEEEecCCCCCcc-eEE
Q psy3833 999 KRLWVTCRELQLRFYKSREDAQ---HS---------SP--INEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSE-MFL 1063 (1087)
Q Consensus 999 k~~w~~~~~~~l~~~k~~~~~~---~~---------~~--~~~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e-~~l 1063 (1087)
.+|-|.|.|.-|.+-+..+... ++ .. -..|.|.++.|. ++ ++.+..+.|..-...|..+ ..|
T Consensus 312 ~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~k~~i~l~~~~v~-~~--~~~~~~f~l~~~~~~~~~~~~~l 388 (418)
T 3t06_A 312 DLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIR-SV--ATDKRAFFIICTSKLGPPQIYEL 388 (418)
T ss_dssp EEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEE-EC--SSCSSEEEEEECCSSSTTCEEEE
T ss_pred EEEEEecCCEEEEEEEcCCceEEeecccccccCCCcccccCCceechhceec-cc--cccCceEEEEecCCCCCceEEEE
Confidence 4888899999888876422100 00 00 136788899887 33 4444444555444445534 458
Q ss_pred eccCHHHHHHHHHHhhhhhcc
Q psy3833 1064 RCENEEQYASWMAACRLQLTE 1084 (1087)
Q Consensus 1064 ~~~~e~qya~wmaacrl~~~~ 1084 (1087)
.|.+++.-..||.+.+=|++.
T Consensus 389 ~A~s~~ek~~W~~~I~~a~~~ 409 (418)
T 3t06_A 389 VALTSSDKNTWMELLEEAVRN 409 (418)
T ss_dssp ECSSHHHHHHHHHHHHHHHHT
T ss_pred EcCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999988764
No 106
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=20.25 E-value=68 Score=33.12 Aligned_cols=51 Identities=31% Similarity=0.382 Sum_probs=35.4
Q ss_pred eecCCCceecccccccCceeEEEEEecCCCCCcceEEeccCHHHHHHHHHHh
Q psy3833 1027 EFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAAC 1078 (1087)
Q Consensus 1027 ~~~l~gcev~pdv~~~~~k~~ikl~~p~~~~~~e~~l~~~~e~qya~wmaac 1078 (1087)
.|.|+=|-|+=...-+.. =.=-+.|.++||.+-++|||.|.++-..|+.|-
T Consensus 122 ~IPLkMayvtR~~~~tD~-e~r~fEv~s~DG~~t~iLrc~D~a~a~~Wf~aI 172 (178)
T 2adz_A 122 HVSLKMAYVSRRCTPTDP-EPRYLEICAADGQDAVFLRAKDEASARSWAGAI 172 (178)
T ss_dssp EEETTTCEEEEECCSSCC-SSCEEEEEETTTTEEEEECCSSHHHHHHHHHHH
T ss_pred eecHHHHHHHHhccCCCC-CccEEEEEcCCCCeeEEEEeCCHHHHHHHHHHH
Confidence 355666655533333222 112357788999999999999999999999874
Done!