RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3833
(1087 letters)
>gnl|CDD|233362 TIGR01340, aconitase_mito, aconitate hydratase, mitochondrial.
This model represents mitochondrial forms of the TCA
cycle enzyme aconitate hydratase, also known as
aconitase and citrate hydro-lyase [Energy metabolism,
TCA cycle].
Length = 745
Score = 1148 bits (2970), Expect = 0.0
Identities = 447/759 (58%), Positives = 542/759 (71%), Gaps = 81/759 (10%)
Query: 132 RLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGVEDLKRAKSQNEE 191
+LRPDRVAMQDA+AQMA+LQF++ GLP+VAVP++IHCDHLI Q GG +DL RA + N+E
Sbjct: 53 KLRPDRVAMQDASAQMALLQFMTCGLPQVAVPASIHCDHLIVGQKGGDKDLARAIATNKE 112
Query: 192 VYAFLRSAGAKYGVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHTPNGGGLGGLCIGVG 251
V+ FL SAG KYG+GFW PGSGIIHQI+LENYAFPGL+M+GTDSHTPN GGLG + IGVG
Sbjct: 113 VFDFLESAGKKYGIGFWKPGSGIIHQIVLENYAFPGLMMLGTDSHTPNAGGLGTIAIGVG 172
Query: 252 GADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHG 311
GADAVD +A PWELK PK++GV+LTG L GWTS KD+ILK+AG+LTV+GGTG I+E
Sbjct: 173 GADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGGTGYIVE--- 229
Query: 312 PGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEI 371
Y GPG++++SCTGM TICNMGAEI
Sbjct: 230 ------------------------------------YFGPGVESLSCTGMATICNMGAEI 253
Query: 372 GATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAK 431
GATTS+FP+N+ M +LKAT R IA+
Sbjct: 254 GATTSIFPFNEA---------------------------------MSRYLKATNRAQIAE 280
Query: 432 EA--MKYQ-SLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWP 488
+A +Y L DEGA+YD+LIE+DL+ LEPH+NGPFTPDL+ PI+K E +KNGWP
Sbjct: 281 DAKTGQYSFFKLKADEGAQYDELIEIDLSKLEPHINGPFTPDLSTPISKFKETVQKNGWP 340
Query: 489 MDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQ 548
+ LIGSCTN+SYEDMSRCASI K+A GLK +PF VTPGSEQIRAT+ERDGI Q
Sbjct: 341 EKLSAGLIGSCTNSSYEDMSRCASIVKDAEQAGLKPKSPFYVTPGSEQIRATLERDGILQ 400
Query: 549 TLREFGGTVLANACGPCIGQWNRKD-VKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSP 607
T +FGG VLANACGPCIGQW+RKD VK GE NTI+ SYNRNF GRND NPAT F+ SP
Sbjct: 401 TFEKFGGIVLANACGPCIGQWDRKDDVKKGEPNTILTSYNRNFRGRNDGNPATMNFLASP 460
Query: 608 ELVTALAIKGTLAFDPRSDTLTGSDGKPFKLRDPFGDELPTKGFDPGVDTYQPPPKD-GS 666
E+VTA++ G+L F+P +D+LT DGK FK P GDELP KGF+ G DT+Q PP
Sbjct: 461 EIVTAMSYAGSLTFNPLTDSLTTPDGKEFKFPAPKGDELPEKGFEAGRDTFQAPPGSPNP 520
Query: 667 SLSVDVDPKSQRLQLLEPFDVWDKKDIKDMVVLIKVKGKCTTDHISAAGPWLKFRGHLDN 726
++ V V P S RLQLLEPF+ W+ KD+ + VLIKV GKCTTDHISAAGPWLK++GHLDN
Sbjct: 521 NVEVAVSPSSDRLQLLEPFEPWNGKDLSGLRVLIKVTGKCTTDHISAAGPWLKYKGHLDN 580
Query: 727 ISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENYGEGSSRE 786
ISNN + A NAE GE+NK + L G G + E+AR +KA G PWV V + NYGEGS+RE
Sbjct: 581 ISNNTLIGAVNAETGEVNKAYD-LDGSKGTIPELARDWKARGQPWVVVAEHNYGEGSARE 639
Query: 787 HAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRISLVGLKDL 846
HAALEPRHLGGR II KSFARIHETNLKKQG+LPLTFAN +DYDKIQP D ++ + L ++
Sbjct: 640 HAALEPRHLGGRIIITKSFARIHETNLKKQGVLPLTFANEADYDKIQPGDEVATLNLYEM 699
Query: 847 AP---GKPVTAQIKHADGKVEEIKLNHSMNEQQITWFQA 882
G V ++ +GKV EIKL H++++ QI +F+A
Sbjct: 700 LKNGGGGEVDLRVTKKNGKVFEIKLKHTVSKDQIGFFKA 738
>gnl|CDD|235974 PRK07229, PRK07229, aconitate hydratase; Validated.
Length = 646
Score = 865 bits (2237), Expect = 0.0
Identities = 283/756 (37%), Positives = 380/756 (50%), Gaps = 155/756 (20%)
Query: 133 LRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTI-HCDHLIEAQVGGVEDLKRAKSQNEE 191
+R D+ QDAT MA LQF + GL RV ++ + DH +L +A +N +
Sbjct: 27 IRIDQTLTQDATGTMAYLQFEAMGLDRVKTELSVQYVDH----------NLLQADFENAD 76
Query: 192 VYAFLRSAGAKYGVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHTPNGGGLGGLCIGVG 251
+ FL+S AKYG+ F PG+GI HQ+ LE +AFPG ++G+DSHTP GGLG L IG G
Sbjct: 77 DHRFLQSVAAKYGIYFSKPGNGICHQVHLERFAFPGKTLLGSDSHTPTAGGLGMLAIGAG 136
Query: 252 GADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHG 311
G D MA P+ LK PKV+GV+LTG L W S+KDVIL++ LTVKGG G IIEY G
Sbjct: 137 GLDVALAMAGGPYYLKMPKVVGVKLTGKLPPWVSAKDVILELLRRLTVKGGVGKIIEYFG 196
Query: 312 PGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEI 371
PG+ +S R TI NMGAE+
Sbjct: 197 PGVATLSVPE----------------------R-----------------ATITNMGAEL 217
Query: 372 GATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAK 431
GATTS+FP ++ R +FLKA RED
Sbjct: 218 GATTSIFPSDE---------------------------------RTREFLKAQGREDDWV 244
Query: 432 EAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDI 491
E L D A+YD++IE+DL+ LEP + GP +PD P++++ + +
Sbjct: 245 E-------LLADPDAEYDEVIEIDLSELEPLIAGPHSPDNVVPVSEVAG--------IKV 289
Query: 492 KVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLR 551
LIGSCTN+SYED+ R ASI K + + PGS Q+ + RDG L
Sbjct: 290 DQVLIGSCTNSSYEDLMRAASILKG---KKVHPKVSLVINPGSRQVLEMLARDGALADLI 346
Query: 552 EFGGTVLANACGPCIGQWNRKDVKMG----EKNTIVNSYNRNFTGRNDANPATHAFVTSP 607
G +L NACGPCIG MG N + ++NRNF GR+ ++ SP
Sbjct: 347 AAGARILENACGPCIG--------MGQAPATGNVSLRTFNRNFPGRS-GTKDAQVYLASP 397
Query: 608 ELVTALAIKGTLAFDPRSDTLTGSDGKPFKLRDPFGDELPTKGFDPGVDTYQPPPKDGSS 667
E A A+ G + DPR TL +G+ KL +P +GF P +DGS
Sbjct: 398 ETAAASALTGVIT-DPR--TLALENGEYPKLEEP-------EGFAVDDAGIIAPAEDGSD 447
Query: 668 LSVDVDPKSQRLQLLEPFDVWDKKDIKDMVVLIKVKGKCTTDHISAAGP-WLKFRGHLDN 726
+ V P + L LLEP D+ + VL+KV TTDHI AG WL +R ++ N
Sbjct: 448 VEVVRGPNIKPLPLLEPLP-----DLLEGKVLLKVGDNITTDHIMPAGAKWLPYRSNIPN 502
Query: 727 ISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENYGEGSSRE 786
IS +F N + K Q + VG ENYG+GSSRE
Sbjct: 503 ISEFVFEGVDNTFPE---RAKEQG-------------------GGIVVGGENYGQGSSRE 540
Query: 787 HAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRISLVGLKDL 846
HAAL PR+LG +A++ KSFARIH+ NL G+LPLTFA+P+DYDKI+ D + + L++
Sbjct: 541 HAALAPRYLGVKAVLAKSFARIHKANLINFGILPLTFADPADYDKIEEGDVLEIEDLREF 600
Query: 847 APGKPVTAQIKHADGKVEEIKLNHSMNEQQITWFQA 882
PG P+T D EEI++ H+++E+QI A
Sbjct: 601 LPGGPLTVVNVTKD---EEIEVRHTLSERQIEILLA 633
>gnl|CDD|153134 cd01584, AcnA_Mitochondrial, Aconitase catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. Mitochondrial aconitase A catalytic domain.
Aconitase (also known as aconitate hydratase and citrate
hydro-lyase) catalyzes the reversible isomerization of
citrate and isocitrate as part of the TCA cycle.
Cis-aconitate is formed as an intermediary product
during the course of the reaction. In eukaryotes two
isozymes of aconitase are known to exist: one found in
the mitochondrial matrix and the other found in the
cytoplasm. This is the mitochondrial form. The
mitochondrial product is coded by a nuclear gene. Most
members of this subfamily are mitochondrial but there
are some bacterial members.
Length = 412
Score = 805 bits (2082), Expect = 0.0
Identities = 327/484 (67%), Positives = 368/484 (76%), Gaps = 73/484 (15%)
Query: 137 RVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGVEDLKRAKSQNEEVYAFL 196
RVAMQDATAQMA+LQF+SSGLP+VAVPSTIHCDHLIEAQVGG +DLKRAK N+EVY FL
Sbjct: 1 RVAMQDATAQMALLQFMSSGLPKVAVPSTIHCDHLIEAQVGGEKDLKRAKDINKEVYDFL 60
Query: 197 RSAGAKYGVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAV 256
SAGAKYG+GFW PGSGIIHQI+LENYAFPGLLMIGTDSHTPN GGLGG+ IGVGGADAV
Sbjct: 61 ASAGAKYGIGFWKPGSGIIHQIVLENYAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAV 120
Query: 257 DVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDN 316
DVMA IPWELKCPKVIGV+LTG L GWTS KDVILKVAGILTVKGGTGAI+E
Sbjct: 121 DVMAGIPWELKCPKVIGVKLTGKLSGWTSPKDVILKVAGILTVKGGTGAIVE-------- 172
Query: 317 ISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGATTS 376
Y GPG+D++SCTGMGTICNMGAEIGATTS
Sbjct: 173 -------------------------------YFGPGVDSLSCTGMGTICNMGAEIGATTS 201
Query: 377 VFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAKEAMKY 436
VFPYN+R M +LKAT R +IA A ++
Sbjct: 202 VFPYNER---------------------------------MKKYLKATGRAEIADLADEF 228
Query: 437 QS-LLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSL 495
+ LL DEGA+YDQLIE++L+ LEPH+NGPFTPDLA P++K E A+KNGWP+D++V L
Sbjct: 229 KDDLLVADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEKNGWPLDLRVGL 288
Query: 496 IGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGG 555
IGSCTN+SYEDM R ASIAK+A+AHGLK + F +TPGSEQIRATIERDG+ QT R+ GG
Sbjct: 289 IGSCTNSSYEDMGRAASIAKQALAHGLKCKSIFTITPGSEQIRATIERDGLLQTFRDAGG 348
Query: 556 TVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAI 615
VLANACGPCIGQW+RKD+K GEKNTIV SYNRNFTGRNDANPATHAFV SPE+VTA+AI
Sbjct: 349 IVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPATHAFVASPEIVTAMAI 408
Query: 616 KGTL 619
GTL
Sbjct: 409 AGTL 412
>gnl|CDD|223977 COG1048, AcnA, Aconitase A [Energy production and conversion].
Length = 861
Score = 660 bits (1706), Expect = 0.0
Identities = 244/851 (28%), Positives = 355/851 (41%), Gaps = 176/851 (20%)
Query: 133 LRPDRVAMQDATAQMAMLQFISSGLPRVA-------------VPSTIHCDHLIEAQVGGV 179
RP RV MQD T A + + VP + DH ++ VGG
Sbjct: 73 FRPARVVMQDFTGVPA--VVDLAAMRDAMVELGGDPAKINPVVPVDLVIDHSVQVDVGGD 130
Query: 180 E-----DLKRAKSQNEEVYAFLRSA-GAKYGVGFWHPGSGIIHQIILENYAF-----PGL 228
+++ +N E Y FL+ A A Y PG+GIIHQ+ LE A PG+
Sbjct: 131 PDAFEKNVELEFERNGERYKFLKWAAKAFYNFRVVPPGTGIIHQVNLEYLAKVVWAKPGV 190
Query: 229 L----MIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKGWT 284
++GTDSHT GGLG L GVGG +A M PW + P+V+GV+LTG L
Sbjct: 191 AYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGVKLTGKLPEGV 250
Query: 285 SSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKR 344
++ D++L V G+L KG G +
Sbjct: 251 TATDLVLTVTGMLRKKGVVGKFV------------------------------------- 273
Query: 345 INEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEI 404
E+ GPG+ ++S TI NMG E GAT+ FP ++
Sbjct: 274 --EFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEE--------------------- 310
Query: 405 GATTSVFPYNNRMYDFLKATLREDIA----KEAMKYQSL--LTPDEGAKYDQLIELDLNT 458
D+L+ T R + + K Q L D+ A+YD+++ELDL+T
Sbjct: 311 ------------TLDYLRLTGRSEEQVALVEAYAKAQGLWYDPADKDAEYDKVLELDLST 358
Query: 459 LEPHVNGPFTPDLAHPINKLGEAAKKN----------------GWPMDIKVSLIGSCTNA 502
+EP + GP P P++++ E +K + ++ I SCTN
Sbjct: 359 VEPSLAGPKRPQDRVPLSEVAENFEKILREIEIKRVYSLLGKELGDGKVVIAAITSCTNT 418
Query: 503 SYEDMSRCASI-AKEAMAHGLKSS--TPFNVTPGSEQIRATIERDGIAQTLREFGGTVLA 559
S D+ A + AK+A+ GLK +V PGS+ + +E+ G+ L + G ++
Sbjct: 419 SNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKAGLLPYLEKLGFNIVG 478
Query: 560 NACGPCIGQWNRKD---VKMGEKNTI----VNSYNRNFTGRNDANPATHAFVTSPELVTA 612
C CIG K N + V S NRNF GR ++ SP LV A
Sbjct: 479 YGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRI-GPLVKANYLASPPLVVA 537
Query: 613 LAIKGTLAFDPRSDTL-TGSDGKPFKLRD---PFGDELPTKGFDPGVDTYQPPPKDGSSL 668
A+ GT+ FD +D L T +DGKP L+D + G + ++ D
Sbjct: 538 YALAGTINFDLTTDPLGTDNDGKPVYLKDIWPSTEEIAEAVGKAVKPEMFRKEYADVFKW 597
Query: 669 -SVDV-------DPKSQRLQLLEPFDVWDKKD---IKDMVVLIKVKGKCTTDHISAAG-- 715
+++V P L PF + IK VL K+ TTDHIS AG
Sbjct: 598 NAIEVPEGPLYDWPNISTYIRLPPFFDGMGAEPKPIKGARVLAKLGDSITTDHISPAGSI 657
Query: 716 ------PWLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQY--------------- 754
+ ++ I N + + M + +
Sbjct: 658 KADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTFANIRIRNEMVPGEGGYTIHQPS 717
Query: 755 GPVNEVARAYKAAGVPWVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLK 814
G + + A YK G+P V V +NYG GSSR+ AA PR LG +A+I +SF RIH +NL
Sbjct: 718 GEIYDAAMKYKEEGIPLVVVAGKNYGTGSSRDWAAKGPRLLGVKAVIAESFERIHRSNLI 777
Query: 815 KQGLLPLTFANPSDYDKIQPNDR--ISLVGLKDLAPGKPVTAQIKHADGKVEEI-KLNHS 871
G+LPL F N YDK+ + I + GL++L PG VT + DG VEE L
Sbjct: 778 GMGVLPLQFPNGETYDKLGLDGEETIDIGGLENLKPGATVTVTVTRGDGPVEEFPVLCRI 837
Query: 872 MNEQQITWFQA 882
++I +++A
Sbjct: 838 DTAEEIEYYKA 848
>gnl|CDD|215861 pfam00330, Aconitase, Aconitase family (aconitate hydratase).
Length = 464
Score = 570 bits (1471), Expect = 0.0
Identities = 213/525 (40%), Positives = 273/525 (52%), Gaps = 102/525 (19%)
Query: 122 YEAEQTGPHS-RLRPDRVAMQDATAQMAMLQFISSGLPRVAVP-STIHCDHLIEAQVGGV 179
A + G +RPDRV MQD T+ A L ++G P VP +TI CDH I Q GG
Sbjct: 13 DPANERGTPYLYIRPDRVLMQDVTSPQAFLGLRAAGRPVRRVPGTTITCDHNIPTQDGGE 72
Query: 180 EDLKRAKSQNEEVYAFLRSAGAKYGVGFW-HPGSGIIHQIILEN-YAFPGLLMIGTDSHT 237
+DL A +N+E Y FL +GVGFW +GI+HQI LEN + PGL ++GTDSHT
Sbjct: 73 KDLNIAIERNKEQYDFLEKNVKAFGVGFWGPGSTGIVHQIGLENGFTLPGLTLVGTDSHT 132
Query: 238 PNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGIL 297
P GGLG L GVGG++A V+A PWE K PKV+G++LTG L G ++KDVILKV G L
Sbjct: 133 PTHGGLGALAFGVGGSEAEHVLAGQPWEQKKPKVMGIKLTGKLNGGITAKDVILKVIGKL 192
Query: 298 TVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNIS 357
TVKGGTG I+ E+ G GID++S
Sbjct: 193 TVKGGTGKIV---------------------------------------EFFGEGIDDLS 213
Query: 358 CTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRM 417
G TICNM EIGATT +FP ++
Sbjct: 214 MEGRMTICNMAIEIGATTGLFPPDET---------------------------------T 240
Query: 418 YDFLKATLREDIAKEAMKYQS---LLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHP 474
+ +LK T R A+EA + + L D+ A+YD++IE+DL+ +EPHV GP TP A P
Sbjct: 241 FKYLKGTGRAPKAEEADEAVAKWKTLKSDKDAQYDKVIEIDLSDIEPHVTGPTTPQDAVP 300
Query: 475 INKLGEAAK----------------KNGWP------MDIKVSLIGSCTNASYEDMSRCAS 512
I+++ WP + + + IGSCTN+SYED+ R A+
Sbjct: 301 ISEVPPDPNNFLDPVVKSMEKALAYMGLWPGTPLKDIKVDKAFIGSCTNSSYEDLRRAAA 360
Query: 513 IAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRK 572
I K A GLK V PGSEQ++AT ERDG+ + E G AN C PCIG +R
Sbjct: 361 IVKGAAGKGLKPWVKATVVPGSEQVKATAERDGLDKIFDEAGFEWRANGCSPCIGMNDRP 420
Query: 573 DVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAIKG 617
D+ GEKNT V+S NRNF GR AN TH + SP +V A AI G
Sbjct: 421 DIIKGEKNTCVSSSNRNFEGRQGANGRTHW-LASPAMVAAAAIAG 464
>gnl|CDD|153129 cd01351, Aconitase, Aconitase catalytic domain; Aconitase catalyzes
the reversible isomerization of citrate and isocitrate
as part of the TCA cycle. Aconitase catalytic domain.
Aconitase (aconitate hydratase) catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. Cis-aconitate is formed as an intermediate
product during the course of the reaction. In eukaryotes
two isozymes of aconitase are known to exist: one found
in the mitochondrial matrix and the other found in the
cytoplasm. Aconitase, in its active form, contains a
4Fe-4S iron-sulfur cluster; three cysteine residues
have been shown to be ligands of the 4Fe-4S cluster.
This is the Aconitase core domain, including structural
domains 1, 2 and 3, which binds the Fe-S cluster. The
aconitase family also contains the following proteins: -
Iron-responsive element binding protein (IRE-BP), a
cytosolic protein that binds to iron-responsive elements
(IREs). IREs are stem-loop structures found in the
5'UTR of ferritin, and delta aminolevulinic acid
synthase mRNAs, and in the 3'UTR of transferrin
receptor mRNA. IRE-BP also express aconitase activity. -
3-isopropylmalate dehydratase (isopropylmalate
isomerase), the enzyme that catalyzes the second step in
the biosynthesis of leucine. - Homoaconitase
(homoaconitate hydratase), an enzyme that participates
in the alpha-aminoadipate pathway of lysine
biosynthesis and that converts cis-homoaconitate into
homoisocitric acid.
Length = 389
Score = 403 bits (1036), Expect = e-131
Identities = 166/484 (34%), Positives = 224/484 (46%), Gaps = 96/484 (19%)
Query: 137 RVAMQDATAQMAMLQFISSGLP-RVAVPSTIHCDHLIEAQVGGVEDLKRAKSQNEEVYAF 195
RV +QDAT MAM F +VA PS I C H Q+ K N E + F
Sbjct: 1 RVMLQDATGPMAMKAFEILAALGKVADPSQIACVHDHAVQL--------EKPVNNEGHKF 52
Query: 196 LRSAGAKYGVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADA 255
L A G+ F+ PG GIIHQI++EN A PG L++G+DSHT + GGLG + G GG D
Sbjct: 53 LSFFAALQGIAFYRPGVGIIHQIMVENLALPGDLLVGSDSHTTSYGGLGAISTGAGGGDV 112
Query: 256 VDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGID 315
VMA P LK P+V+GV LTG L + KDV+LK+ GI+ V G I+E++G G+
Sbjct: 113 AFVMAGGPAWLKKPEVVGVNLTGKLSPGVTGKDVVLKLGGIVGVDGVLNRIVEFYGEGVS 172
Query: 316 NISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGATT 375
++S TICNM
Sbjct: 173 SLSIEDRLTICNMM---------------------------------------------- 186
Query: 376 SVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAKEAMK 435
AE+GATT +FP + +L+AT R + +
Sbjct: 187 --------------------------AELGATTGIFPEDKTTLKWLEATGRPLLKNLWLA 220
Query: 436 YQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSL 495
+ L DEGA+YDQ+IE+DL+ LEP ++GP PD A ++++ I L
Sbjct: 221 FPEELLADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVEG--------TKIDQVL 272
Query: 496 IGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGG 555
IGSCTN Y DM A + K + VTPGS + AT+ R+G + L + G
Sbjct: 273 IGSCTNNRYSDMLAAAKLLK---GAKVAPGVRLIVTPGSRMVYATLSREGYYEILVDSGA 329
Query: 556 TVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAI 615
+L CGPC+G R + + V+S NRNF GR H ++ SPEL A AI
Sbjct: 330 RILPPGCGPCMGNGAR---LVADGEVGVSSGNRNFPGRLGTYER-HVYLASPELAAATAI 385
Query: 616 KGTL 619
G +
Sbjct: 386 AGKI 389
>gnl|CDD|130409 TIGR01342, acon_putative, aconitate hydratase, putative, Aquifex
type. This model represents a small family of proteins
homologous (and likely functionally equivalent to)
aconitase 1. Members are found, so far in the anaerobe
Clostridium acetobutylicum, in the microaerophilic,
early-branching bacterium Aquifex aeolicus, and in the
halophilic archaeon Halobacterium sp. NRC-1. No member
is experimentally characterized [Energy metabolism, TCA
cycle].
Length = 658
Score = 342 bits (878), Expect = e-104
Identities = 224/731 (30%), Positives = 317/731 (43%), Gaps = 161/731 (22%)
Query: 126 QTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVP-STIHCDHLIEAQVGGVEDLKR 184
+ G + D+ QDAT M L+F + + V + +CDH ++ +
Sbjct: 17 EPGEEIAIEIDQTLSQDATGTMCWLEFEALEMDEVKTELAAQYCDH----------NMLQ 66
Query: 185 AKSQNEEVYAFLRSAGAKYGVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHTPNGGGLG 244
+N + + FL SA K+G F PG+GI H + EN+A PG ++G+DSHTP GGLG
Sbjct: 67 FDFKNADDHKFLMSAAGKFGAWFSKPGNGICHNVHKENFAAPGKTLLGSDSHTPTAGGLG 126
Query: 245 GLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTG 304
L IG GG D MA + L+ P+++GV L G L W ++KD+IL++ L+VKGG G
Sbjct: 127 MLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIILELLRRLSVKGGLG 186
Query: 305 AIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTI 364
I EY G G++ +S +R TI
Sbjct: 187 KIFEYFGEGVEELSVP----------------------ER-----------------ATI 207
Query: 365 CNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKAT 424
NMGAE+GAT+S+FP + +L A
Sbjct: 208 TNMGAELGATSSIFPSDDITE---------------------------------AWLAAF 234
Query: 425 LREDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKK 484
RED + L D A+Y IE+DL+ LEP + P PD P+ ++
Sbjct: 235 DREDDFVD-------LLADADAEYADEIEIDLSDLEPLIAEPHMPDNVVPVREIAG---- 283
Query: 485 NGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERD 544
+++ +IGSCTN ++ED+ A + + H T F V PGS+Q I ++
Sbjct: 284 ----IEVDQVMIGSCTNGAFEDLLPAAKLLEGREVH---KDTEFAVAPGSKQALELIAQE 336
Query: 545 GIAQTLREFGGTVLANACGPCIGQWNRKDVKMG----EKNTIVNSYNRNFTGRNDANPAT 600
G G L ACG CIG +G + S+NRNF GR
Sbjct: 337 GALAEFLAAGANFLEAACGACIG--------IGFAPASDGVSLRSFNRNFEGRA-GIEDA 387
Query: 601 HAFVTSPELVTALAIKGTLAFDPRSDTLTGSDGKPFKLRDPFGD------ELPTK---GF 651
++ SPE TA AI G + DPR L D GD E+ K G+
Sbjct: 388 KVYLASPETATAAAIAGEI-IDPR------------DLADDEGDLEAIGFEMGEKFPGGY 434
Query: 652 DPGVDTYQPPPKDGSSLSVDVDPKSQRLQLLEPFDVWDKKDIKDMVVLIKVKGKCTTDHI 711
D D P ++ + P + L +P DI+ L ++ TTDHI
Sbjct: 435 DAA-DIDIIPKEEREDDDIIKGPNIKPLPEFDPL----GADIEGETAL-IMEDNITTDHI 488
Query: 712 SAAGP-WLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVP 770
AG LKFR +++ IS +++ ++ E A+A G
Sbjct: 489 IPAGADILKFRSNIEAISEFTL-----------HRIDDEFA-------ERAKAADEKGKA 530
Query: 771 WVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYD 830
+ + ENYG+GSSREHAAL P LG A+I KSFARIH NL G+LPL F N DY
Sbjct: 531 GIIIAGENYGQGSSREHAALAPMFLGVEAVIAKSFARIHHANLFNFGILPLEFDNEEDYA 590
Query: 831 KIQPNDRISLV 841
K + D I +
Sbjct: 591 KFELGDDIEIP 601
>gnl|CDD|238810 cd01578, AcnA_Mitochon_Swivel, Mitochondrial aconitase A swivel
domain. Aconitase (also known as aconitate hydratase and
citrate hydro-lyase) catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. This is the aconitase swivel domain, which
undergoes swivelling conformational change in the enzyme
mechanism. In eukaryotes two isozymes of aconitase are
known to exist: one found in the mitochondrial matrix
and the other found in the cytoplasm. This is the
mitochondrial form. The mitochondrial product is coded
by a nuclear gene. Most members of this subfamily are
mitochondrial but there are some bacterial members.
Length = 149
Score = 311 bits (798), Expect = e-100
Identities = 117/149 (78%), Positives = 132/149 (88%)
Query: 701 KVKGKCTTDHISAAGPWLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEV 760
K KGKCTTDHISAAGPWLK+RGHLDNISNNL + A NAENG+ N VKNQ+TG+YGPV +
Sbjct: 1 KAKGKCTTDHISAAGPWLKYRGHLDNISNNLLIGAINAENGKANSVKNQVTGEYGPVPDT 60
Query: 761 ARAYKAAGVPWVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLP 820
AR YKA G+ WV +GDENYGEGSSREHAALEPRHLGGRAII KSFARIHETNLKKQGLLP
Sbjct: 61 ARDYKAHGIKWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLP 120
Query: 821 LTFANPSDYDKIQPNDRISLVGLKDLAPG 849
LTFA+P+DYDKI P+D++ ++GL D APG
Sbjct: 121 LTFADPADYDKIHPDDKVDILGLTDFAPG 149
>gnl|CDD|153135 cd01585, AcnA_Bact, Aconitase catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. Bacterial Aconitase-like catalytic domain.
Aconitase (aconitate hydratase or citrate hydrolyase)
catalyzes the reversible isomerization of citrate and
isocitrate as part of the TCA cycle. Cis-aconitate is
formed as an intermediate product during the course of
the reaction. This distinct subfamily is found only in
bacteria and Archaea. Its exact characteristics are not
known.
Length = 380
Score = 312 bits (801), Expect = 5e-97
Identities = 174/491 (35%), Positives = 231/491 (47%), Gaps = 118/491 (24%)
Query: 136 DRVAMQDATAQMAMLQFISSGLPRVAVP-STIHCDHLIEAQVGGVEDLKRAKSQNEEVYA 194
D+ QDAT MA LQF + G+ RV S + DH Q +N + +
Sbjct: 1 DQTLTQDATGTMAYLQFEAMGVDRVRTELSVSYVDHNT-LQTD---------FENADDHR 50
Query: 195 FLRSAGAKYGVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHTPNGGGLGGLCIGVGGAD 254
FL++ A+YG+ F PG+GI HQ+ LE +A PG ++G+DSHTP GGLG L IG GG D
Sbjct: 51 FLQTVAARYGIYFSRPGNGICHQVHLERFAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLD 110
Query: 255 AVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGI 314
MA P+ + PKV+GVRLTG L W ++KDVIL++ LTVKGG G I EY GPG+
Sbjct: 111 VALAMAGEPYYIPMPKVVGVRLTGELPPWVTAKDVILELLRRLTVKGGVGKIFEYTGPGV 170
Query: 315 DNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGAT 374
AT SV TI NMGAE+GAT
Sbjct: 171 -------------------ATLSV--------------------PERATITNMGAELGAT 191
Query: 375 TSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAKEAM 434
TS+FP ++ R +FL A RED E
Sbjct: 192 TSIFPSDE---------------------------------RTREFLAAQGREDDWVE-- 216
Query: 435 KYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVS 494
L D A+YD+ IE+DL+ LEP + P +PD P+ ++ IKV
Sbjct: 217 -----LAADADAEYDEEIEIDLSELEPLIARPHSPDNVVPVREVA----------GIKVD 261
Query: 495 --LIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLRE 552
IGSCTN+SYED+ A+I K H V PGS+Q+ + R+G L
Sbjct: 262 QVAIGSCTNSSYEDLMTVAAILKGRRVH---PHVSMVVAPGSKQVLEMLARNGALADLLA 318
Query: 553 FGGTVLANACGPCIGQWNRKDVKMGEK----NTIVNSYNRNFTGRNDANPATHAFVTSPE 608
G +L +ACGPCIG MG+ V ++NRNF GR+ ++ SPE
Sbjct: 319 AGARILESACGPCIG--------MGQAPPTGGVSVRTFNRNFEGRS-GTKDDLVYLASPE 369
Query: 609 LVTALAIKGTL 619
+ A A+ G +
Sbjct: 370 VAAAAALTGVI 380
>gnl|CDD|237246 PRK12881, acnA, aconitate hydratase; Provisional.
Length = 889
Score = 266 bits (682), Expect = 4e-75
Identities = 236/874 (27%), Positives = 344/874 (39%), Gaps = 231/874 (26%)
Query: 134 RPDRVAMQDATAQ------MAMLQFISS--GLPRV---AVPSTIHCDHLIEAQVGGVED- 181
P RV MQD T AM + G P VP + DH + G +D
Sbjct: 82 VPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDA 141
Query: 182 ----LKRAKSQNEEVYAFLRSA-GAKYGVGFWHPGSGIIHQIILE--------------N 222
+K +N E Y FL+ A PG+GI+HQ+ LE
Sbjct: 142 LDLNMKIEFQRNAERYQFLKWGMQAFDNFRVVPPGTGIMHQVNLEYLARVVHTKEDDGDT 201
Query: 223 YAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKG 282
A+P L +GTDSHT G+G L GVGG +A VM P + P V+GV LTG L+
Sbjct: 202 VAYPDTL-VGTDSHTTMINGIGVLGWGVGGIEAEAVMLGQPVYMLIPDVVGVELTGKLRE 260
Query: 283 WTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYN 342
++ D++L V +L +G G +E+ G G +
Sbjct: 261 GVTATDLVLTVTEMLRKEGVVGKFVEFFGEG----------------------VASLTLG 298
Query: 343 KRINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGA 402
R TI NM E GAT FP +++ T+
Sbjct: 299 DR-----------------ATIANMAPEYGATMGFFPVDEQ------------TL----- 324
Query: 403 EIGATTSVFPYNNRMYDFLKATLREDIAKEA----MKYQSLL-TPDEGAKYDQLIELDLN 457
D+L+ T R + K Q L P +Y + +ELDL+
Sbjct: 325 ----------------DYLRLTGRTEAQIALVEAYAKAQGLWGDPKAEPRYTRTLELDLS 368
Query: 458 TLEPHVNGP---------------FTPDLAHPINKLGEAAK---------KNGWPMDIKV 493
T+ P + GP F+ + P+ + G A K +G + +
Sbjct: 369 TVAPSLAGPKRPQDRIALGNVKSAFSDLFSKPVAENGFAKKAQTSNGVDLPDG---AVAI 425
Query: 494 SLIGSCTNASYED---MSRCASIAKEAMAHGL------KSSTPFNVTPGSEQIRATIERD 544
+ I SCTN S + + +AK+A+ GL K+S + PGS+ + +ER
Sbjct: 426 AAITSCTNTS--NPSVLIAAGLLAKKAVERGLTVKPWVKTS----LAPGSKVVTEYLERA 479
Query: 545 GIAQTLREFGGTVLANACGPCIGQWNRKDV-----KMGEKNTI----VNSYNRNFTGRND 595
G+ L + G ++ C CIG N + + KN + V S NRNF GR
Sbjct: 480 GLLPYLEKLGFGIVGYGCTTCIG--NSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIH 537
Query: 596 ANPATHAFVTSPELVTALAIKGTLAFDPRSDTL-TGSDGKPFKLRD--PFG---DELPTK 649
N F+ SP LV A A+ GT+ D ++ L G DG+P L+D P D L
Sbjct: 538 PN-IKANFLASPPLVVAYALAGTVRRDLMTEPLGKGKDGRPVYLKDIWPSSAEIDALVAF 596
Query: 650 GFDPGVDTYQP---PPKDGSSL--SVDV--------DPKSQRLQLLEP--FDVWDK---- 690
DP + ++ GS L +++ DPKS ++ P FD
Sbjct: 597 AVDP--EDFRKNYAEVFKGSELWAAIEAPDGPLYDWDPKSTYIR--RPPFFDFSMGPAAS 652
Query: 691 -KDIKDMVVLIKVKGKCTTDHIS---------AAGPWLKFRGHLDNISNNLFLTATNAEN 740
+K L + TTDHIS AG +LK G N+ + N
Sbjct: 653 IATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSY---GSRRGN 709
Query: 741 GEM-------NK-VKNQL-------------TGQYGPVNEVARAYKAAGVPWVAVGDENY 779
E+ N +KN + +G+ + + A Y+AAG P V + E Y
Sbjct: 710 HEVMMRGTFANVRIKNLMIPGKEGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEY 769
Query: 780 GEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFA---NPSDYDKIQPND 836
G GSSR+ AA R LG +A+I +SF RIH +NL G+LPL F + + +
Sbjct: 770 GTGSSRDWAAKGTRLLGVKAVIAESFERIHRSNLVGMGVLPLQFKGGDSRQSL-GLTGGE 828
Query: 837 RISLVGL-KDLAPGKPVTAQIKHADGKVEEIKLN 869
+ GL ++ P + VT I ADG E + +
Sbjct: 829 TFDIEGLPGEIKPRQDVTLVIHRADGSTERVPVL 862
>gnl|CDD|236445 PRK09277, PRK09277, aconitate hydratase; Validated.
Length = 888
Score = 251 bits (645), Expect = 4e-70
Identities = 245/885 (27%), Positives = 343/885 (38%), Gaps = 258/885 (29%)
Query: 134 RPDRVAMQDAT--------AQM--AMLQF------ISSGLPRVAVPSTIHCDHLIEAQVG 177
RP RV MQD T A M A+ I+ P V V I DH ++
Sbjct: 83 RPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKIN---PLVPVDLVI--DHSVQVDYF 137
Query: 178 GVED-----LKRAKSQNEEVYAFLRSA-GAKYGVGFWHPGSGIIHQIILE---------- 221
G D ++ +NEE Y FL+ A PG+GI HQ+ LE
Sbjct: 138 GTPDAFEKNVELEFERNEERYQFLKWGQKAFDNFRVVPPGTGICHQVNLEYLAPVVWTRE 197
Query: 222 ---NYAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTG 278
A+P L +GTDSHT GLG L GVGG +A M P + P+V+GV+LTG
Sbjct: 198 DGELVAYPDTL-VGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPSSMLIPEVVGVKLTG 256
Query: 279 GLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSV 338
L ++ D++L V +L KG G +E+
Sbjct: 257 KLPEGVTATDLVLTVTEMLRKKGVVGKFVEFF---------------------------- 288
Query: 339 FPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTIC 398
G G+ ++S TI NM E GAT FP ID T+
Sbjct: 289 -----------GEGLASLSLADRATIANMAPEYGATCGFFP------IDEE------TL- 324
Query: 399 NMGAEIGATTSVFPYNNRMYDFLKATLRED--IA--KEAMKYQSL-LTPDEGAKYDQLIE 453
D+L+ T R++ +A + K Q L P E Y ++E
Sbjct: 325 --------------------DYLRLTGRDEEQVALVEAYAKAQGLWRDPLEEPVYTDVLE 364
Query: 454 LDLNTLEPHVNGP-------FTPDLAHPINKL--------GEAAKKNGWPMDIK-----V 493
LDL+T+EP + GP D+ K G + G ++ +
Sbjct: 365 LDLSTVEPSLAGPKRPQDRIPLSDVKEAFAKSAELGVQGFGLDEAEEGEDYELPDGAVVI 424
Query: 494 SLIGSCTNASY-EDMSRCASIAKEAMAHGL------KSSTPFNVTPGSEQIRATIERDGI 546
+ I SCTN S M +AK+A+ GL K+S + PGS+ + +E+ G+
Sbjct: 425 AAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTS----LAPGSKVVTDYLEKAGL 480
Query: 547 AQTLREFGGTVLANACGPCIGQWN--------RKDVKMGEKN---TIVNSYNRNFTGRND 595
L G ++ C CIG N K + + + T V S NRNF GR
Sbjct: 481 LPYLEALGFNLVGYGCTTCIG--NSGPLPPEIEKAIN--DNDLVVTAVLSGNRNFEGR-- 534
Query: 596 ANP-ATHAFVTSPELVTALAIKGTLAFDPRSDTL-TGSDGKPFKLRD--PFGDE---LPT 648
+P ++ SP LV A A+ GT+ D D L T DG P L+D P +E +
Sbjct: 535 IHPLVKANYLASPPLVVAYALAGTVDIDLEKDPLGTDKDGNPVYLKDIWPSDEEIDAVVA 594
Query: 649 KGFDPG--VDTYQPPPKDGS---SLSV------DVDPKSQRLQ--------LLEPFDVWD 689
K P Y + ++ V D DP S ++ L EP V
Sbjct: 595 KAVKPEMFRKEYADVFEGDERWNAIEVPEGPLYDWDPDSTYIRNPPYFEGMLAEPGPV-- 652
Query: 690 KKDIKDMVVLIKVKGKCTTDHIS---------AAGPWLK--------F------------ 720
+DIK VL + TTDHIS AG +L F
Sbjct: 653 -RDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYGSRRGNHEV 711
Query: 721 --RGHLDNISNNLFLTATNAENGEMNKVKNQL-------------TGQYGPVNEVARAYK 765
RG NI +++N++ G+ + + A YK
Sbjct: 712 MMRGTFANI-----------------RIRNEMVPGVEGGYTRHFPEGEVMSIYDAAMKYK 754
Query: 766 AAGVPWVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFAN 825
G P V + + YG GSSR+ AA R LG +A+I +SF RIH +NL G+LPL F
Sbjct: 755 EEGTPLVVIAGKEYGTGSSRDWAAKGTRLLGVKAVIAESFERIHRSNLVGMGVLPLQFKP 814
Query: 826 PSDYD--KIQPNDRISLVGLKDLAPGKPVTAQIKHADGKVEEIKL 868
+ + + GL+DL PG VT I ADG+V E +
Sbjct: 815 GESRKTLGLDGTETFDIEGLEDLKPGATVTVVITRADGEVVEFPV 859
>gnl|CDD|233363 TIGR01341, aconitase_1, aconitate hydratase 1. This model
represents one form of the TCA cycle enzyme aconitate
hydratase, also known as aconitase and citrate
hydro-lyase. It is found in bacteria, archaea, and
eukaryotic cytosol. It has been shown to act also as an
iron-responsive element binding protein in animals and
may have the same role in other eukaryotes [Energy
metabolism, TCA cycle].
Length = 876
Score = 236 bits (603), Expect = 8e-65
Identities = 231/868 (26%), Positives = 348/868 (40%), Gaps = 214/868 (24%)
Query: 132 RLRPDRVAMQDATAQMAMLQFIS-----------SGLPRVAVPSTIHCDHLIEAQVGGVE 180
+P RV MQD T A++ + VP + DH ++ G E
Sbjct: 63 AFKPARVVMQDFTGVPAVVDLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTE 122
Query: 181 D-----LKRAKSQNEEVYAFLRSAGAKYGVGFWH------PGSGIIHQIILE-------- 221
++ +N E Y FL K+ + PG+GIIHQ+ LE
Sbjct: 123 YALEFNMELEFERNLERYQFL-----KWAQKAFRNFRVVPPGTGIIHQVNLEYLATVVFK 177
Query: 222 ------NYAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVR 275
A+P L +GTDSHT GLG L GVGG +A M P+ + P+VIGV+
Sbjct: 178 AEVDGELTAYPDSL-VGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVK 236
Query: 276 LTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGAT 335
LTG L+ ++ D++L V +L KG G +E+
Sbjct: 237 LTGKLQEGVTATDLVLTVTQMLRKKGVVGKFVEF-------------------------- 270
Query: 336 TSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMG 395
GPG+ +S TI NM E GAT FP ID+++
Sbjct: 271 -------------FGPGLSELSLADRATIANMAPEYGATCGFFP------IDDVT----- 306
Query: 396 TICNMGAEIGATTSVFPYNNRMYDFLKATLRE----DIAKEAMKYQSLLTPD-EGAKYDQ 450
+L+ T R+ ++ ++ + Q L D E +Y
Sbjct: 307 ----------------------LQYLRLTGRDGDHVELVEKYARAQGLFYDDSEEPRYTD 344
Query: 451 LIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKK----------------------NGWP 488
++ELDL+ +EP V GP P P+ ++ K NG
Sbjct: 345 VVELDLSDVEPSVAGPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKEPLKKKVNGQN 404
Query: 489 M-----DIKVSLIGSCTNASYED-MSRCASIAKEAMAHGLKSSTPF---NVTPGSEQIRA 539
+ ++ I SCTN S M +AK+A+ GLK P+ ++ PGS+ +
Sbjct: 405 KQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVP-PYVKTSLAPGSKVVTD 463
Query: 540 TIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGE---KNTI----VNSYNRNFTG 592
+ G+ L E G ++ C CIG + E KN + V S NRNF G
Sbjct: 464 YLAESGLLPYLEELGFNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEG 523
Query: 593 RNDANPATHA-FVTSPELVTALAIKGTLAFDPRSDTL-TGSDGKPFKLRD--PFGDE--- 645
R +P ++ SP LV A A+ G + + ++ + T DGKP LRD P E
Sbjct: 524 R--IHPLVKGNYLASPPLVVAYALAGNIDINLYTEPIGTDKDGKPVYLRDIWPSNKEIAA 581
Query: 646 -----LPTKGFDPGVDTYQPPPKDGSSLSV------DVDPKSQRLQLLEPF------DVW 688
+ + F + + +S+ D KS ++ L PF D
Sbjct: 582 YVNMAVKPEMFKKEYENIFEGNERWNSIKTPSGDTYSWDEKSTYIR-LPPFFEEMKQDPE 640
Query: 689 DKKDIKDMVVLIKVKGKCTTDHISAAGP---------WLKFRGHLDNISNNLFLTATNAE 739
+ +DIK +L+ + TTDHIS AG +L+ RG N+ N E
Sbjct: 641 EVEDIKGARILLLLGDSITTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHE 700
Query: 740 ----NGEMN-KVKNQL-------------TGQYGPVNEVARAYKAAGVPWVAVGDENYGE 781
N ++KN + G+ V + A YK G P V + + YG
Sbjct: 701 VMMRGTFANIRIKNLMVKGKEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGS 760
Query: 782 GSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTF--ANPSDYDKIQPNDRIS 839
GSSR+ AA + LG +A+I +SF RIH +NL G++PL F ++ + ++ I
Sbjct: 761 GSSRDWAAKGTKLLGVKAVIAESFERIHRSNLVGMGVIPLQFPQGEDAETLGLTGDETID 820
Query: 840 LVGLKDLAPGKPVTAQIKHADGKVEEIK 867
+ G+KDL PGK VT ++ G+ K
Sbjct: 821 IDGIKDLKPGKEVTVTFTNSKGEKITFK 848
>gnl|CDD|153133 cd01583, IPMI, 3-isopropylmalate dehydratase catalyzes the
isomerization between 2-isopropylmalate and
3-isopropylmalate. Aconatase-like catalytic domain of
3-isopropylmalate dehydratase and related
uncharacterized proteins. 3-isopropylmalate dehydratase
catalyzes the isomerization between 2-isopropylmalate
and 3-isopropylmalate, via the formation of
2-isopropylmaleate 3-isopropylmalate. IPMI is involved
in fungal and bacterial leucine biosynthesis and is also
found in eukaryotes.
Length = 382
Score = 222 bits (568), Expect = 3e-64
Identities = 119/487 (24%), Positives = 186/487 (38%), Gaps = 113/487 (23%)
Query: 137 RVAMQDATAQMAMLQFISSGLPRVAVPSTIHC--DHLIEAQVGGVEDLKRAKSQNEEVYA 194
+ D T+ A +G +V P I DH + +A Q + +
Sbjct: 1 LHLVHDVTSPQAFEGLREAGREKVWDPEKIVAVFDHNVPT------PDIKAAEQVKTLRK 54
Query: 195 FLRSAGAK-YGVGFWHPGSGIIHQIILENYAF-PGLLMIGTDSHTPNGGGLGGLCIGVGG 252
F + G + VG GI H I+ E PG+ ++G DSHT G G G+G
Sbjct: 55 FAKEFGINFFDVG----RQGICHVILPEKGLTLPGMTIVGGDSHTCTHGAFGAFATGIGT 110
Query: 253 ADAVDVMA--DIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYH 310
D V+A + W + P+ + V + G L ++KDVIL + G + V G T +E+
Sbjct: 111 TDVAHVLATGKL-W-FRVPETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEFA 168
Query: 311 GPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAE 370
G I+++S M + T+CNM E
Sbjct: 169 GEAIESLS---------MEERM------------------------------TLCNMAIE 189
Query: 371 IGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIA 430
GA + ++ TT +++LK +
Sbjct: 190 AGAKAGIVAPDE------------------------TT---------FEYLKGRGKA--- 213
Query: 431 KEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMD 490
Y L DE A+YD+++E+D + LEP V P +PD P++++ +
Sbjct: 214 -----YWKELKSDEDAEYDKVVEIDASELEPQVAWPHSPDNVVPVSEVE--------GIK 260
Query: 491 IKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTL 550
I IGSCTN ED+ A I K + V P S+++ E++G+ +
Sbjct: 261 IDQVFIGSCTNGRLEDLRAAAEILK---GRKVADGVRLIVVPASQRVYKQAEKEGLIEIF 317
Query: 551 REFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELV 610
E G V CG C+G + V++ NRNF GR +P ++ SP
Sbjct: 318 IEAGAEVRPPGCGACLG---GHMGVLAPGERCVSTSNRNFKGRM-GSPGARIYLASPATA 373
Query: 611 TALAIKG 617
A AI G
Sbjct: 374 AASAITG 380
>gnl|CDD|223143 COG0065, LeuC, 3-isopropylmalate dehydratase large subunit [Amino
acid transport and metabolism].
Length = 423
Score = 215 bits (550), Expect = 2e-61
Identities = 135/522 (25%), Positives = 204/522 (39%), Gaps = 114/522 (21%)
Query: 114 GRTLAD------SSYEAEQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIH 167
+TL + E G L D + D T+ A +G +V P
Sbjct: 2 AKTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEGLREAGR-KVRDPEKTV 60
Query: 168 C--DHLIEAQVGGVEDLKRAKSQNEEVYAFLRSAGAK--YGVGFWHPGSGIIHQIILEN- 222
DH + D+K A+ Q +E+ + G Y VG GI+HQ+ E
Sbjct: 61 ATFDHNVPT-----PDIKAAEQQ-KELRENAKEFGIVNFYDVG----DQGIVHQVGPEQG 110
Query: 223 YAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKG 282
PG+ ++G DSHT G G G+G D V+A + PK + V + G L
Sbjct: 111 LTLPGMTIVGGDSHTCTHGAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPP 170
Query: 283 WTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYN 342
++KD+IL + G + V GGTG IE+ G I ++S M +
Sbjct: 171 GVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLS---------MEGRM---------- 211
Query: 343 KRINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGA 402
T+CNM E GA + ++
Sbjct: 212 --------------------TLCNMAIEAGAKAGIIAPDE-------------------- 231
Query: 403 EIGATTSVFPYNNRMYDFLKATLREDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPH 462
TT +++LK + A+ Y L DE A YD+++ELD + LEP
Sbjct: 232 ----TT---------FEYLKE--WDG----AVAYWKTLKSDEDAVYDKVVELDASDLEPQ 272
Query: 463 VNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGL 522
V P PD P++++ P+ I IGSCTN ED+ A I K +
Sbjct: 273 VAWPTNPDNVVPVSEVE------PDPIKIDQVFIGSCTNGRIEDLRAAAEILKG---RKV 323
Query: 523 KSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTI 582
V PGS +++ E++G+ + E G CGPC+G +G
Sbjct: 324 APGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLG---MHPGVLGPGERC 380
Query: 583 VNSYNRNFTGRNDANPATHAFVTSPELVTALAIKGTLAFDPR 624
++ NRNF GR +P ++ SP + A A++G + DPR
Sbjct: 381 ASTSNRNFEGRQ-GSPGARTYLASPAMAAAAAVEGEIV-DPR 420
>gnl|CDD|234748 PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit;
Reviewed.
Length = 418
Score = 214 bits (547), Expect = 6e-61
Identities = 133/499 (26%), Positives = 200/499 (40%), Gaps = 118/499 (23%)
Query: 134 RPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIH--CDHLIEAQVGGVEDLKRAKSQNEE 191
+ D V D T +A+ +F G +V PS I DH + A+ D+K A+ Q
Sbjct: 27 KVDLVMAHDITGPLAIKEFEKIGGDKVFDPSKIVIVFDHFVPAK-----DIKSAEQQKI- 80
Query: 192 VYAFLRSAGAKYGVGFWHPGSGIIHQIILEN-YAFPGLLMIGTDSHTPNGGGLGGLCIGV 250
+ F + G F+ G GI HQ++ E PG +++G DSHT G LG G+
Sbjct: 81 LREFAKEQGIPN---FFDVGEGICHQVLPEKGLVRPGDVVVGADSHTCTYGALGAFATGM 137
Query: 251 GGADAVDVMA--DIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIE 308
G D MA W K P+ I V L G L ++KDVIL + G + V G T +E
Sbjct: 138 GSTDMAAAMATGKT-W-FKVPETIKVVLEGKLPPGVTAKDVILHIIGDIGVDGATYKALE 195
Query: 309 YHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMG 368
+ G I+ +S M R+ T+ NM
Sbjct: 196 FTGETIEALS---------MDE-------------RM-----------------TLANMA 216
Query: 369 AEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLRED 428
E GA +F +++ T+ ++LK D
Sbjct: 217 IEAGAKAGIFAPDEK------------TL---------------------EYLKERAGRD 243
Query: 429 IAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWP 488
DE A+Y+++ E+DL+ LEP V P PD P++++ G
Sbjct: 244 YKP--------WKSDEDAEYEEVYEIDLSKLEPQVAAPHLPDNVKPVSEVE------GTK 289
Query: 489 MDIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQ 548
+D IGSCTN ED+ A I K + V P S++I ++G+ +
Sbjct: 290 VDQVF--IGSCTNGRLEDLRIAAEILK---GRKVAPGVRLIVIPASQKIYLQALKEGLIE 344
Query: 549 TLREFGGTVLANACGPCIGQWNRKDVKMG---EKNTIVNSYNRNFTGRNDANPATHAFVT 605
+ G V CGPC+G MG +++ NRNF GR +P + ++
Sbjct: 345 IFVDAGAVVSTPTCGPCLG------GHMGVLAPGEVCLSTTNRNFKGRM-GSPESEVYLA 397
Query: 606 SPELVTALAIKGTLAFDPR 624
SP + A A+ G + DPR
Sbjct: 398 SPAVAAASAVTGKIT-DPR 415
>gnl|CDD|240263 PTZ00092, PTZ00092, aconitate hydratase-like protein; Provisional.
Length = 898
Score = 221 bits (566), Expect = 6e-60
Identities = 231/827 (27%), Positives = 327/827 (39%), Gaps = 242/827 (29%)
Query: 136 DRVAMQDATAQMAMLQFISSGLPRV---AVPSTIHCDHLIEAQVGGVEDLKRAKSQNEEV 192
D AM+DA ++ G P VP + DH ++ D A N+E+
Sbjct: 106 DLAAMRDAMKRLG-------GDPAKINPLVPVDLVIDHSVQVDFSRSPD---ALELNQEI 155
Query: 193 --------YAFLRSAGAKYGVGFWH------PGSGIIHQIILENYA---FP--GLL---- 229
+ FL K+G + PGSGI+HQ+ LE A F GLL
Sbjct: 156 EFERNLERFEFL-----KWGSKAFKNLLIVPPGSGIVHQVNLEYLARVVFNKDGLLYPDS 210
Query: 230 MIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDV 289
++GTDSHT GLG L GVGG +A VM P + P+V+G +LTG L ++ D+
Sbjct: 211 VVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMVLPEVVGFKLTGKLSEHVTATDL 270
Query: 290 ILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYH 349
+L V +L +G G +E++
Sbjct: 271 VLTVTSMLRKRGVVGKFVEFY--------------------------------------- 291
Query: 350 GPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTS 409
GPG+ +S TI NM E GAT FP ID +
Sbjct: 292 GPGVKTLSLADRATIANMAPEYGATMGFFP------IDEKT------------------- 326
Query: 410 VFPYNNRMYDFLKATLRE----DIAKEAMKYQSLL-TPDEGAKYDQLIELDLNTLEPHVN 464
D+LK T R ++ ++ +K L T E +Y ++ELDL+T+ P V
Sbjct: 327 --------LDYLKQTGRSEEKVELIEKYLKANGLFRTYAEQIEYSDVLELDLSTVVPSVA 378
Query: 465 GP---------------FTPDLAHPINKLG------EAAKK-----NGWPMDIK-----V 493
GP FT L+ P+ G + KK G + +
Sbjct: 379 GPKRPHDRVPLSDLKKDFTACLSAPVGFKGFGIPEEKHEKKVKFTYKGKEYTLTHGSVVI 438
Query: 494 SLIGSCTNASYED-MSRCASIAKEAMAHGLKSSTPFNVT---PGSEQIRATIERDGIAQT 549
+ I SCTN S M +AK+A+ GLK P+ T PGS+ + +E G+ +
Sbjct: 439 AAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVP-PYIKTSLSPGSKVVTKYLEASGLLKY 497
Query: 550 LREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVN---------SYNRNFTGRNDANPAT 600
L + G C CIG N D+ I N S NRNF GR +P T
Sbjct: 498 LEKLGFYTAGYGCMTCIG--NSGDLDPEVSEAITNNDLVAAAVLSGNRNFEGR--VHPLT 553
Query: 601 HA-FVTSPELVTALAIKGTLAFDPRSDTL-TGSDGKPFKLRD--PFGDE---LPTKGFDP 653
A ++ SP LV A A+ G + D ++ L + GKP LRD P +E L K P
Sbjct: 554 RANYLASPPLVVAYALAGRVNIDFETEPLGSDKTGKPVFLRDIWPSREEIQALEAKYVKP 613
Query: 654 G--VDTYQPPP---KDGSSLSV------DVDPKSQRLQ--------LLEPFDVWDKKDIK 694
+ Y K + L V + D KS + LEP + K I+
Sbjct: 614 EMFKEVYSNITQGNKQWNELQVPKGKLYEWDEKSTYIHNPPFFQTMELEPPPI---KSIE 670
Query: 695 DMVVLIKVKGKCTTDHISAAGPWLKFRGHLDNISNN----LFLTATNAENGEMN------ 744
+ L+ + TTDHIS AG NI+ N +L E + N
Sbjct: 671 NAYCLLNLGDSITTDHISPAG----------NIAKNSPAAKYLMERGVERKDFNTYGARR 720
Query: 745 --------------KVKNQLTGQYGP------------VNEVARAYKAAGVPWVAVGDEN 778
++ N+L G+ GP + + A YK GVP + + +
Sbjct: 721 GNDEVMVRGTFANIRLINKLCGKVGPNTVHVPTGEKMSIYDAAEKYKQEGVPLIVLAGKE 780
Query: 779 YGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFAN 825
YG GSSR+ AA P G +A+I +SF RIH +NL G+LPL F N
Sbjct: 781 YGSGSSRDWAAKGPYLQGVKAVIAESFERIHRSNLVGMGILPLQFLN 827
>gnl|CDD|201399 pfam00694, Aconitase_C, Aconitase C-terminal domain. Members of
this family usually also match to pfam00330. This domain
undergoes conformational change in the enzyme mechanism.
Length = 131
Score = 193 bits (493), Expect = 2e-57
Identities = 54/131 (41%), Positives = 67/131 (51%)
Query: 696 MVVLIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYG 755
M + ++G CT D IS L N+ L + NK + TG+
Sbjct: 1 MPKFLTLRGVCTPDFISNVDTDLIIPKQFLGTIANIGLGNILFDGWRANKTTHLPTGENP 60
Query: 756 PVNEVARAYKAAGVPWVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKK 815
+ A YK G P + +G +NYG GSSREHAA PR LG +A+I KSFARIH NL K
Sbjct: 61 DFVDAAERYKQHGAPILVIGGKNYGCGSSREHAAWAPRDLGIKAVIAKSFARIHRNNLIK 120
Query: 816 QGLLPLTFANP 826
GLLPL F N
Sbjct: 121 NGLLPLEFPNG 131
>gnl|CDD|233715 TIGR02086, IPMI_arch, 3-isopropylmalate dehydratase, large subunit.
This subfamily is a subset of the larger HacA family
(Homoaconitate hydratase family, TIGR01343) and is most
closely related to the 3-isopropylmalate dehydratase,
large subunits which form TIGR00170. This subfamily
includes the members of TIGR01343 which are gene
clustered with other genes of leucine biosynthesis. The
rest of the subfamily includes mainly archaeal species
which exhibit two hits to this model. In these cases it
is possible that one or the other of the hits does not
have a 3-isopropylmalate dehydratase activity but rather
one of the other related aconitase-like activities.
Length = 412
Score = 193 bits (493), Expect = 6e-54
Identities = 127/495 (25%), Positives = 194/495 (39%), Gaps = 112/495 (22%)
Query: 134 RPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHC--DHLIEAQVGGVEDLKRAKSQNEE 191
D D T +A+ G RV P I DH++ ++ A Q E
Sbjct: 25 EVDLAMAHDGTGPLAIETLRELGA-RVEDPEKIVIFFDHVVPPP-----TVEAANRQKE- 77
Query: 192 VYAFLRSAGAKYGVGFWHPGSGIIHQIILEN-YAFPGLLMIGTDSHTPNGGGLGGLCIGV 250
+R ++G+ + G GI HQ+++E YA PG++++G DSHT G +G G+
Sbjct: 78 ----IREFAKEHGIPVFDVGEGICHQVLVEEGYAGPGMVVVGGDSHTCTSGAVGAFATGM 133
Query: 251 GGAD-AVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEY 309
G D A+ + W LK P+ I V + G + ++KDV L + G L G T IE+
Sbjct: 134 GATDVAIALATGKTW-LKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEF 192
Query: 310 HGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGA 369
G I+ ++R+ T+CNM
Sbjct: 193 FGLPIEA----------------------MSMDERM-----------------TLCNMAV 213
Query: 370 EIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDI 429
E GA + ++ Y++LK +
Sbjct: 214 EAGAKAGIVVPDEET---------------------------------YEYLKKRRGYE- 239
Query: 430 AKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPM 489
+L PD GAKYD IE+DL+ LEP V P + D P++ +
Sbjct: 240 -------FRILRPDPGAKYDDEIEIDLSDLEPLVAVPHSVDNVRPVSDVEG--------T 284
Query: 490 DIKVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQT 549
+I IGSCTN ED+ A I + + V P S ++ +GI T
Sbjct: 285 EIDQVFIGSCTNGRIEDLRIAAEILEG---RRVHPDVRLIVVPASRKVYERALEEGIILT 341
Query: 550 LREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPEL 609
L G + CGPC+G R +G+ V++ NRNF GR +P ++ SP
Sbjct: 342 LIRAGAIICPPGCGPCLG---RHMGVLGDGEVCVSTTNRNFRGRM-GSPDAEIYLASPAT 397
Query: 610 VTALAIKGTLAFDPR 624
A A++G + DP+
Sbjct: 398 AAASAVEGYIT-DPQ 411
>gnl|CDD|130410 TIGR01343, hacA_fam, homoaconitate hydratase family protein. This
model represents a subfamily of proteins consisting of
aconitase, homoaconitase, 3-isopropylmalate dehydratase,
and uncharacterized proteins. The majority of the
members of this family have been designated as
3-isopropylmalate dehydratase large subunit (LeuC) in
microbial genome annotation, but the only characterized
member is Thermus thermophilus homoaconitase, an enzyme
of a non-aspartate pathway of Lys biosynthesis.
Length = 412
Score = 192 bits (490), Expect = 1e-53
Identities = 131/492 (26%), Positives = 197/492 (40%), Gaps = 108/492 (21%)
Query: 136 DRVAMQDATAQMAMLQFISSGLPRVAVPSTIHC--DHLIEAQVGGVEDLKRAKSQNEEVY 193
D+ + D TA +A+ + G+ +V P I DH++ A +K A+ Q +
Sbjct: 26 DQAMVHDITAPLAIRRLEEYGIDKVFDPERIVIVVDHVVPA-----STIKAAEMQ-KLAR 79
Query: 194 AFLRSAGAKYGVGFWHPGSGIIHQIILEN-YAFPGLLMIGTDSHTPNGGGLGGLCIGVGG 252
F++ G K+ F+ G GI HQ++ E PG L++G DSHT G LG G+G
Sbjct: 80 EFVKKTGIKH---FFDVGEGICHQVLPEEGLVKPGDLVVGADSHTCTYGALGAFATGMGS 136
Query: 253 ADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGP 312
D +A + P+ + V LTG L ++KDVIL+V G + V G T +E+HG
Sbjct: 137 TDIAYAIATGKTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAMEFHGE 196
Query: 313 GIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIG 372
I N++ M + T+ NM E G
Sbjct: 197 TIKNMT---------MEERM------------------------------TLANMAIEAG 217
Query: 373 ATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAKE 432
T + E T +LK +E
Sbjct: 218 GKTGII------------------------EPDEKT---------RAYLKERYKEP---- 240
Query: 433 AMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIK 492
Y+S DE A+Y + +E+D + LEP V P D HP+ ++ G +D
Sbjct: 241 FRVYKS----DEDAEYAKEVEIDASQLEPVVAAPHNVDNVHPV------SEVEGIEVD-- 288
Query: 493 VSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLRE 552
IGSCTN ED+ A I K + V P S + ++G+ + +
Sbjct: 289 QVFIGSCTNGRIEDLRVAAKILK---GRKVAPDVRLIVIPASRAVYLQALKEGLIEIFVK 345
Query: 553 FGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTA 612
G V CGPC+G R + +++ NRNF GR +P ++ SP A
Sbjct: 346 AGAVVSTPGCGPCLG---RHQGVLAPGEVCISTSNRNFKGRM-GDPNAEIYLASPATAAA 401
Query: 613 LAIKGTLAFDPR 624
A+KG +A DPR
Sbjct: 402 SAVKGRIA-DPR 412
>gnl|CDD|215047 PLN00070, PLN00070, aconitate hydratase.
Length = 936
Score = 196 bits (501), Expect = 1e-51
Identities = 237/869 (27%), Positives = 345/869 (39%), Gaps = 226/869 (26%)
Query: 134 RPDRVAMQDAT--------AQM--AMLQFIS-SGLPRVAVPSTIHCDHLIEAQVGGVEDL 182
+P RV +QD T A M AM VP + DH ++ V E+
Sbjct: 121 KPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENA 180
Query: 183 KRAK-----SQNEEVYAFLRSAGAKYGVGFWH------PGSGIIHQIILENYA-----FP 226
+A +N+E +AFL K+G + PGSGI+HQ+ LE
Sbjct: 181 VQANMELEFQRNKERFAFL-----KWGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTD 235
Query: 227 GLL----MIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKG 282
G+L ++GTDSHT GLG GVGG +A M P + P V+G +L+G L+
Sbjct: 236 GILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRD 295
Query: 283 WTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYN 342
++ D++L V +L G G +E
Sbjct: 296 GVTATDLVLTVTQMLRKHGVVGKFVE---------------------------------- 321
Query: 343 KRINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGA 402
++G G+ +S TI NM E GAT FP + + + + TG
Sbjct: 322 -----FYGEGMSELSLADRATIANMSPEYGATMGFFPVD-HVTLQYLKLTGRS------D 369
Query: 403 EIGATTSVFPYNNRMY-DFLKATLREDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEP 461
E A + N+M+ D+ + P + Y +ELDL +EP
Sbjct: 370 ETVAMIEAYLRANKMFVDYNE-------------------PQQERVYSSYLELDLEDVEP 410
Query: 462 HVNGPFTPDLAHPI------------NKLG--------EAAKK------NGWPMDIK--- 492
++GP P P+ NK+G EA K +G P +++
Sbjct: 411 CISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKEAQSKVAKFSFHGQPAELRHGS 470
Query: 493 --VSLIGSCTNASYED-MSRCASIAKEAMAHGL--KSSTPFNVTPGSEQIRATIERDGIA 547
++ I SCTN S M +AK+A GL K ++ PGS + + + G+
Sbjct: 471 VVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSGVVTKYLLKSGLQ 530
Query: 548 QTLREFGGTVLANACGPCIGQWNRKDVKMGE---KNTIVN----SYNRNFTGRNDANPAT 600
+ L + G ++ C CIG D + +N IV S NRNF GR +P T
Sbjct: 531 KYLNQQGFHIVGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGR--VHPLT 588
Query: 601 HA-FVTSPELVTALAIKGTLAFDPRSDTL-TGSDGKPFKLRD--PFGDE---------LP 647
A ++ SP LV A A+ GT+ D + + TG DGK RD P +E LP
Sbjct: 589 RANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLP 648
Query: 648 TKGFDPGVDTYQPPPKDG---SSLSV------DVDPKSQRLQLLEP-------FDVWDKK 691
D TY+ K + LSV DPKS + EP
Sbjct: 649 ----DMFKSTYEAITKGNPMWNQLSVPSGTLYSWDPKSTYIH--EPPYFKNMTMSPPGPH 702
Query: 692 DIKDMVVLIKVKGKCTTDHISAAG------PWLKF------------------------- 720
+KD L+ TTDHIS AG P K+
Sbjct: 703 GVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGNDEIMA 762
Query: 721 RGHLDNIS-NNLFLTATNAENGEMN-KVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDEN 778
RG NI N L GE+ K + TG+ V + A YK+ G + +
Sbjct: 763 RGTFANIRIVNKLL------KGEVGPKTVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAE 816
Query: 779 YGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDK--IQPND 836
YG GSSR+ AA P LG +A+I KSF RIH +NL G++PL F + D D + ++
Sbjct: 817 YGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHE 876
Query: 837 RISL---VGLKDLAPGKPVTAQIKHADGK 862
R ++ + ++ PG+ VT + +GK
Sbjct: 877 RYTIDLPSNISEIKPGQDVT--VTTDNGK 903
>gnl|CDD|241270 cd01237, PH_fermitin, Fermitin family pleckstrin homology (PH)
domain. Fermitin functions as a mediator of integrin
inside-out signalling. The recruitment of Fermitin
proteins and Talin to the membrane mediates the terminal
event of integrin signalling, via interaction with
integrin beta subunits. Fermatin has FERM domain
interrupted with a pleckstrin homology (PH) domain.
Fermitin family homologs (Fermt1, 2, and 3, also known as
Kindlins) are each encoded by a different gene. In
mammalian studies, Fermt1 is generally expressed in
epithelial cells, Fermt2 is expressed inmuscle tissues,
and Fermt3 is expressed in hematopoietic lineages.
Specifically Fermt2 is expressed in smooth and striated
muscle tissues in mice and in the somites (a trunk muscle
precursor) and neural crest in Xenopus embryos. As such
it has been proposed that Fermt2 plays a role in
cardiomyocyte and neural crest differentiation.
Expression of mammalian Fermt3 is associated with
hematopoietic lineages: the anterior ventral blood
islands, vitelline veins, and early myeloid cells. In
Xenopus embryos this expression, also include the
notochord and cement gland. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 110
Score = 174 bits (444), Expect = 4e-51
Identities = 59/102 (57%), Positives = 83/102 (81%), Gaps = 1/102 (0%)
Query: 979 PELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPD 1038
PEL DYL+ KPK+FT+K +KR W ++ L +YKS+E++ + +PI + +L+GCEVTPD
Sbjct: 1 PELADYLKYFKPKKFTLKGFKRYWFVFKDTHLSYYKSKEES-NGAPIQQINLKGCEVTPD 59
Query: 1039 VNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAACRL 1080
VN+SQGKF IKL +P+ +GM+E++LRC++EEQYA WMAACRL
Sbjct: 60 VNVSQGKFGIKLLIPSPEGMNEVWLRCDSEEQYAKWMAACRL 101
Score = 54.7 bits (132), Expect = 5e-09
Identities = 19/22 (86%), Positives = 21/22 (95%)
Query: 98 EEQYASWMAACRLASKGRTLAD 119
EEQYA WMAACRLASKG+T+AD
Sbjct: 89 EEQYAKWMAACRLASKGKTMAD 110
>gnl|CDD|131138 TIGR02083, LEU2, 3-isopropylmalate dehydratase, large subunit.
Homoaconitase, aconitase, and 3-isopropylmalate
dehydratase have similar overall structures. All are
dehydratases (EC 4.2.1.-) and bind a Fe-4S iron-sulfur
cluster. 3-isopropylmalate dehydratase is split into
large (leuC) and small (leuD) chains in eubacteria.
Several pairs of archaeal proteins resemble the leuC and
leuD pair in length and sequence but even more closely
resemble the respective domains of homoaconitase, and
their identity is uncertain. These homologs are
described by a separate model of subfamily (rather than
equivalog) homology type (TIGR01343). This model along
with TIGR00170 describe clades which consist only of
LeuC sequences. Here, the genes from Pyrococcus
furiosus, Clostridium acetobutylicum, Thermotoga
maritima and others are gene clustered with related
genes from the leucine biosynthesis pathway [Amino acid
biosynthesis, Pyruvate family].
Length = 419
Score = 166 bits (422), Expect = 2e-44
Identities = 138/501 (27%), Positives = 199/501 (39%), Gaps = 117/501 (23%)
Query: 133 LRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHC--DHLIEAQVGGVEDLKRAKSQNE 190
+ D V D T +A+ F G +V P + DH + D+K A Q +
Sbjct: 25 AKLDIVLGNDITTPLAIKAFKEYGGKKVFDPDRVALVPDHFTPNK-----DIKSA-EQCK 78
Query: 191 EVYAFLRSAGAKYGVGFWHPGS-GIIHQIILE-NYAFPGLLMIGTDSHTPNGGGLGGLCI 248
+ F R G + F+ G+ GI H ++ E PG L+IG DSHT G LG
Sbjct: 79 MMREFAREQGIEK---FFEIGNMGIEHALLPEEGIVKPGDLIIGADSHTCTYGALGAFAT 135
Query: 249 GVGGADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIE 308
GVG D MA + P+ I L G LK W + KD+IL + GI+ V G
Sbjct: 136 GVGSTDMAVGMATGKAWFRVPEAIKFVLKGKLKPWVTGKDLILHIIGIIGVDGA------ 189
Query: 309 YHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMG 368
+ E+ G G+ +S TI NM
Sbjct: 190 ---------------------------------LYKSMEFSGEGLKELSMDDRFTIANMA 216
Query: 369 AEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLRED 428
E GA T +FP +D I TI +
Sbjct: 217 IEAGAKTGIFP------VDEI------TI-------------------------EYEKGR 239
Query: 429 IAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWP 488
+E Y++ DE AKY ++IE+DL+ LEP V P P+ I++ G+
Sbjct: 240 GKREEKIYKA----DEDAKYVRVIEIDLSELEPQVAFPHLPENTKDISEAGK-------- 287
Query: 489 MDIKVS--LIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGI 546
+IK+ +IGSCTN ED+ A I K + + PGS+ + ++G+
Sbjct: 288 EEIKIDQVVIGSCTNGRLEDLRLAAEILK---GKTVAPDVRCIIIPGSQNVYLEAMKEGL 344
Query: 547 AQTLREFGGTVLANACGPCIGQWNRKDVKMG---EKNTIVNSYNRNFTGRNDANPATHAF 603
+ E G V CGPC+G MG E +++ NRNF GR +P + +
Sbjct: 345 LEIFIEAGAVVSTPTCGPCLGG------HMGILAEGERAISTTNRNFVGRM-GHPKSEVY 397
Query: 604 VTSPELVTALAIKGTLAFDPR 624
+ SP + A AIKG +A P
Sbjct: 398 LASPAVAAASAIKGYIA-SPE 417
>gnl|CDD|131386 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate dehydratase,
Fe/S-dependent. Members of this family appear in an
operon for the degradation of propionyl-CoA via
2-methylcitrate. This family is homologous to aconitases
A and B and appears to act the part as
2-methylisocitrate dehydratase, the enzyme after PrpD
and before PrpB. In Escherichia coli, which lacks a
member of this family, 2-methylisocitrate dehydratase
activity was traced to aconitase B (TIGR00117)
(PMID:12473114).
Length = 858
Score = 156 bits (396), Expect = 5e-39
Identities = 217/839 (25%), Positives = 341/839 (40%), Gaps = 190/839 (22%)
Query: 135 PDRVAMQDATAQMAMLQFI--------SSGLP---RVAVPSTIHCDHLIEAQVGGVEDLK 183
P RV D Q A++ G P VP+ + DH + + GG +
Sbjct: 73 PARVVCHDILGQTALVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVEYGGFDPDA 132
Query: 184 RAKSQ------NEEVYAFLR-SAGAKYGVGFWHPGSGIIHQIILENY----------AFP 226
K++ NE+ + F+ + A V G+GI+HQI LE AFP
Sbjct: 133 FEKNRAIEDRRNEDRFHFINWTKTAFKNVDVIPAGNGIMHQINLEKMSPVIQVKNGVAFP 192
Query: 227 GLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSS 286
+GTDSHTP+ DA+ V+A IGV GGL+ +
Sbjct: 193 DTC-VGTDSHTPH-------------VDALGVIA-----------IGV---GGLE----A 220
Query: 287 KDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRIN 346
+ V+L A ++ + G +E G I+ T + + A T + ++
Sbjct: 221 ETVMLGRASMMRLPDIVG--VELTGKRQPGITATDI---------VLALTEFLRKERVVS 269
Query: 347 ---EYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAE 403
E+ G G ++ TI NM E GAT ++F +++ ID + TG
Sbjct: 270 AYLEFFGEGARALTIGDRATISNMTPEYGATAAMFYIDEQ-TIDYLKLTGR--------- 319
Query: 404 IGATTSVFPYNNRMYDFLKATLREDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHV 463
+ + L E AK A + L + A Y++++E DL+++ ++
Sbjct: 320 ---------------EPEQVKLVETYAKAAGLWADSL---KHAVYERVLEFDLSSVVRNM 361
Query: 464 NGPFTPDLAHPINKLGEAAKKNGWPMD-----------IKVSLIGSCTNASY-EDMSRCA 511
GP P P + L AA+ P + + ++ I SCTN S ++
Sbjct: 362 AGPSNPHARVPTSDL--AARGIAGPAEEQPEGLMPDGAVIIAAITSCTNTSNPRNVVAAG 419
Query: 512 SIAKEAMAHGLKSSTPF---NVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQ 568
+A+ A GLK P+ + PGS+ + +E G+ L + G ++A AC C G
Sbjct: 420 LLARNANQLGLKRK-PWVKTSFAPGSKVAQLYLEEAGLLPELEQLGFGIVAFACTTCNGM 478
Query: 569 WNRKDVKMGEK-------NTIVNSYNRNFTGRNDANP-ATHAFVTSPELVTALAIKGTLA 620
D + ++ T V S NRNF GR +P A AF+ SP LV A AI GT+
Sbjct: 479 SGALDPVIQQEIIDRDLYATAVLSGNRNFDGR--IHPYAKQAFLASPPLVVAYAIAGTIR 536
Query: 621 FDPRSDTL-TGSDGKPFKLRD--PFGDELPT------------KGFDP--GVDTYQPPPK 663
FD D L +DGKP +L+D P +E+ K + P +D Q
Sbjct: 537 FDIEKDVLGVDADGKPIRLKDIWPSDEEIDAVVAAAVKPEQFRKVYIPMFDLDDTQSAV- 595
Query: 664 DGSSLSVDVDPKSQRLQLLEPFDVWD-----KKDIKDMVVLIKVKGKCTTDHIS------ 712
S D P S ++ P+ W+ ++ +K M L + TTDH+S
Sbjct: 596 ---SPLYDWRPMSTYIRR-PPY--WEGALAGERTLKGMRPLAILGDNITTDHLSPSNAIL 649
Query: 713 ---AAGPWLKFRGHLDNISNNL------FLTATNAE------NGEM----NKVKNQLTGQ 753
AAG +L G + N+ LTA A EM VK +
Sbjct: 650 ADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNEMVKNDGSVKQGSLAR 709
Query: 754 YGPVNEVARAYKAAGV------PWVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFAR 807
P +V R ++A P + + +YG+GSSR+ AA R G AI+ + F R
Sbjct: 710 IEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFER 769
Query: 808 IHETNLKKQGLLPLTFANPSDYDKIQPNDRISLVGLKDLAPGKPVTAQIKHADGKVEEI 866
IH TNL G+LPL F ++ + + + + ++ P +T + +G+ E+
Sbjct: 770 IHRTNLVGMGVLPLEFKPGTNRHTLGLDGTETFDVVGEITPRADLTLVVTRKNGEKLEV 828
>gnl|CDD|129245 TIGR00139, h_aconitase, homoaconitase. Homoaconitase is known only
as a fungal enzyme from two species, where it is part of
an unusual lysine biosynthesis pathway. Because This
model is based on just two sequences from a narrow
taxonomic range, it may not recognize distant orthologs,
should any exist. Homoaconitase, aconitase, and
3-isopropylmalate dehydratase have similar overall
structures, but 3-isopropylmalate dehydratase is split
into large (leuC) and small (leuD) chains in eubacteria.
Several pairs of archaeal proteins resemble leuC and
leuD over their lengths but are even closer to the
respective domains of homoaconitase, and their identity
is uncertain [Amino acid biosynthesis, Aspartate
family].
Length = 712
Score = 146 bits (369), Expect = 6e-36
Identities = 136/535 (25%), Positives = 220/535 (41%), Gaps = 94/535 (17%)
Query: 126 QTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTI--HCDHLIEAQVGGVEDLK 183
+G + ++P D + A L+F+ G ++ P I DH D++
Sbjct: 23 HSGDYVSIKPAHCMSHDNSWPCA-LKFMGIGASKIHNPDQIVMTLDH----------DIQ 71
Query: 184 RAKSQNEEVYAFLRSAGAKYGVGFWHPGSGIIHQIILEN-YAFPGLLMIGTDSHTPNGGG 242
+N + Y + K+G+ F+ G GI HQI++E +AFPG L + +DSH+ GG
Sbjct: 72 NKSDKNLKKYKNIEEFAKKHGIDFYPAGRGIGHQIMIEEGFAFPGNLAVASDSHSNMYGG 131
Query: 243 LGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGG 302
LG L + DA + A + P V V G L S KD+I+ + G+
Sbjct: 132 LGCLGTPIVRTDAAAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDV 191
Query: 303 TGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMG 362
IE+ G + + P + R+
Sbjct: 192 LNHAIEFTGSE--------------------DSLNALPIDHRL----------------- 214
Query: 363 TICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLK 422
TI NM E GA + +FP ++ + ID + G T+ +G G P+ N
Sbjct: 215 TIANMTTEWGALSGLFPIDKTL-IDWLK--GKATLAALGLADG------PFINP------ 259
Query: 423 ATLREDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAA 482
A R K + L D+ A Y + + +DL +L +V+GP + +A+P+ L
Sbjct: 260 AAERFTHPALEEKAEIPLKADKDAHYAKELFIDLASLSHYVSGPNSVKVANPLKDLEA-- 317
Query: 483 KKNGWPMDIKV--SLIGSCTNASYEDMSRCASIAKEA----------MAHGLKSSTPFNV 530
DIK+ + + SCTN+ D++ A + EA +A G++ F +
Sbjct: 318 ------QDIKIDKAYLVSCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVE----FYI 367
Query: 531 TPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNF 590
S + A E +G + L E G L CGPCIG ++ GE +++ NRNF
Sbjct: 368 AAASIEEEAAAEGNGAWEKLLEAGAIPLPAGCGPCIGL-GAGLLEPGEVG--ISASNRNF 424
Query: 591 TGRNDANPATHAFVTSPELVTALAIKGTLAFDPRSDTLTGSDGKPFKLRDPFGDE 645
GR + A A++ SP +V A A+ G ++ + G F D +E
Sbjct: 425 KGRMGSKDAK-AYLASPAVVAASALLGKISGPAEVLSPEGWTEIIFGEGDGIKEE 478
>gnl|CDD|183543 PRK12466, PRK12466, isopropylmalate isomerase large subunit;
Provisional.
Length = 471
Score = 132 bits (334), Expect = 2e-32
Identities = 133/548 (24%), Positives = 198/548 (36%), Gaps = 120/548 (21%)
Query: 114 GRTLA----DSSYEAEQTGPHSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHC- 168
RTL DS A H L DR + + T+ A + G V P
Sbjct: 3 PRTLYDKLWDSHTVARLDDGHVLLYIDRHLLNEYTSPQAFSGLRARGRT-VRRPDLTLAV 61
Query: 169 -DHLIEAQVGGVEDLKRAKSQNEEVYAFLRSAGAKYGV---GFWHPGSGIIHQIILE-NY 223
DH++ + G + + Y LR A +G+ P GI+H + E
Sbjct: 62 VDHVVPTRPGRDRGITDPGGALQVDY--LRENCADFGIRLFDVDDPRQGIVHVVAPELGL 119
Query: 224 AFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKGW 283
PG++++ DSHT G LG L G+G ++ V+A + PK + VR+ G L
Sbjct: 120 TLPGMVIVCGDSHTTTYGALGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPG 179
Query: 284 TSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNK 343
++KD+IL + + G TG IE+ G I +S G
Sbjct: 180 VTAKDLILALIARIGADGATGYAIEFAGEAIRALSMEG---------------------- 217
Query: 344 RINEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAE 403
R+ T+CNM E GA G
Sbjct: 218 RM-----------------TLCNMAVEAGAR--------------------------GGL 234
Query: 404 IGATTSVFPY-NNRMYDFLKATLREDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPH 462
I + F Y R + + A+ Y L D A +D+ +E+D + P
Sbjct: 235 IAPDETTFDYLRGRPRA-----PKGALWDAALAYWRTLRSDADAVFDREVEIDAADIAPQ 289
Query: 463 VNGPFTPDLAHPIN-------KLGEAAKKNGWP--------------MDIKVS--LIGSC 499
V +PD A PI + A++ I + IGSC
Sbjct: 290 VTWGTSPDQAVPITGRVPDPAAEADPARRAAMERALDYMGLTPGTPLAGIPIDRVFIGSC 349
Query: 500 TNASYEDMSRCASIAKEAMAHGLKSSTPFN--VTPGSEQIRATIERDGIAQTLREFGGTV 557
TN ED+ A++ + G K + V PGS +R E +G+A+ G
Sbjct: 350 TNGRIEDLRAAAAVLR-----GRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGFEW 404
Query: 558 LANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAIKG 617
C C+ N + GE+ ++ NRNF GR TH + SP +V A A+ G
Sbjct: 405 REPGCSMCLAM-NDDVLAPGER--CASTTNRNFEGRQGPGARTH--LMSPAMVAAAAVAG 459
Query: 618 TLAFDPRS 625
+ D RS
Sbjct: 460 HIT-DVRS 466
>gnl|CDD|238811 cd01579, AcnA_Bact_Swivel, Bacterial Aconitase-like swivel domain.
Aconitase (aconitate hydratase or citrate hydrolyase)
catalyzes the reversible isomerization of citrate and
isocitrate as part of the TCA cycle. Cis-aconitate is
formed as an intermediate product during the course of
the reaction. This is the aconitase-like swivel domain,
which is believed to undergo swivelling conformational
change in the enzyme mechanism. This distinct subfamily
is found only in bacteria and archea. Its exact
characteristics are not known.
Length = 121
Score = 119 bits (299), Expect = 2e-31
Identities = 61/143 (42%), Positives = 75/143 (52%), Gaps = 23/143 (16%)
Query: 701 KVKGKCTTDHISAAGP-WLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNE 759
KV TTDHI AG L R ++ IS +F +
Sbjct: 1 KVGDNITTDHIMPAGAKVLPLRSNIPAISEFVF---------------------HRVDPT 39
Query: 760 VARAYKAAGVPWVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLL 819
A KAAG P VG ENYG+GSSREHAAL P +LG RA++ KSFARIH NL G+L
Sbjct: 40 FAERAKAAG-PGFIVGGENYGQGSSREHAALAPMYLGVRAVLAKSFARIHRANLINFGIL 98
Query: 820 PLTFANPSDYDKIQPNDRISLVG 842
PLTFA+ DYD+ + D++ L
Sbjct: 99 PLTFADEDDYDRFEQGDQLELPL 121
>gnl|CDD|232854 TIGR00170, leuC, 3-isopropylmalate dehydratase, large subunit.
Members of this family are 3-isopropylmalate
dehydratase, large subunit, or the large subunit domain
of single-chain forms. Homoaconitase, aconitase, and
3-isopropylmalate dehydratase have similar overall
structures. All are dehydratases (EC 4.2.1.-) and bind a
Fe-4S iron-sulfur cluster. 3-isopropylmalate dehydratase
is split into large (leuC) and small (leuD) chains in
eubacteria. Several pairs of archaeal proteins resemble
the leuC and leuD pair in length and sequence but even
more closely resemble the respective domains of
homoaconitase, and their identity is uncertain. These
homologs are now described by a separate model of
subfamily (rather than equivalog) homology type, and the
priors and cutoffs for this model have been changed to
focus this equivalog family more narrowly [Amino acid
biosynthesis, Pyruvate family].
Length = 465
Score = 127 bits (321), Expect = 6e-31
Identities = 123/476 (25%), Positives = 182/476 (38%), Gaps = 107/476 (22%)
Query: 169 DHLIEAQVGGVEDLKR-AKSQNEEVYAFLRSAGAKYGVGFWHPGSGIIHQIILE-NYAFP 226
DH I Q AK Q E+ + G + GI+H + E P
Sbjct: 62 DHNIPTQNRDFNIKDEVAKIQVTELEKNCKEFGVRL-FDLHSVDQGIVHVMGPEQGLTLP 120
Query: 227 GLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSS 286
G+ ++ DSHT G G L G+G ++ V+A + K + + + G L ++
Sbjct: 121 GMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITA 180
Query: 287 KDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRIN 346
KD+IL + G V GGTG +IE+ G I ++S G R+
Sbjct: 181 KDIILAIIGKTGVAGGTGHVIEFCGEAIRDLSMEG----------------------RM- 217
Query: 347 EYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGA 406
T+CNM E GA G+ I
Sbjct: 218 ----------------TVCNMAIEAGAR-----------------AGL---------IAP 235
Query: 407 TTSVFPY-NNRMYDFLKATLREDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNG 465
+ F Y R + A ++ K A+ Y L DEGA +D +I L+ N + P V
Sbjct: 236 DETTFEYCKGRPH----APKGKEFDK-AVAYWKTLKTDEGAVFDTVITLEANDISPQVTW 290
Query: 466 PFTPDLAHPIN-------------KLGEAAK-------KNGWPM-DIKVS--LIGSCTNA 502
P P+N A + + G P+ DIKV IGSCTN+
Sbjct: 291 GTNPGQVLPVNSEVPDPESFADPVDKASAERALAYMGLEPGTPLKDIKVDKVFIGSCTNS 350
Query: 503 SYEDMSRCASIAK-EAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANA 561
ED+ A++ K +A +K+ V PGS ++ E++G+ + E G
Sbjct: 351 RIEDLRAAAAVIKGRKVADNVKAL----VVPGSGLVKLQAEKEGLDKIFIEAGFEWREPG 406
Query: 562 CGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAIKG 617
C C+G N D + E ++ NRNF GR TH + SP + A AI G
Sbjct: 407 CSMCLGMNN--DR-LPEGERCASTSNRNFEGRQGRGGRTH--LVSPAMAAAAAIHG 457
>gnl|CDD|153136 cd01586, AcnA_IRP, Aconitase A catalytic domain. Aconitase A
catalytic domain. This is the major form of the TCA
cycle enzyme aconitate hydratase, also known as
aconitase and citrate hydrolyase. It includes bacterial
and archaeal aconitase A, and the eukaryotic cytosolic
form of aconitase. This group also includes sequences
that have been shown to act as an iron-responsive
element (IRE) binding protein in animals and may have
the same role in other eukaryotes.
Length = 404
Score = 125 bits (317), Expect = 9e-31
Identities = 79/238 (33%), Positives = 111/238 (46%), Gaps = 38/238 (15%)
Query: 137 RVAMQDATAQMAMLQFISSGLPRVAV------PSTIH--------CDHLIEAQVGGVED- 181
RV +QD T A++ + R AV P I+ DH ++ G D
Sbjct: 1 RVILQDFTGVPAVVDLAAM---RDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADA 57
Query: 182 ----LKRAKSQNEEVYAFLRSAGAKYG-VGFWHPGSGIIHQIILE--------------N 222
+K +N E Y FL+ + + PG+GIIHQ+ LE
Sbjct: 58 LAKNMKLEFERNRERYEFLKWGQKAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDG 117
Query: 223 YAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKG 282
A+P + +GTDSHT GLG L GVGG +A VM P + P+V+GV+LTG L+
Sbjct: 118 VAYPDSV-VGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMLLPEVVGVKLTGKLRP 176
Query: 283 WTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFP 340
++ D++L V +L G G +E+ GPG+ +S TI NM E GAT FP
Sbjct: 177 GVTATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFP 234
Score = 75.4 bits (186), Expect = 4e-14
Identities = 69/237 (29%), Positives = 97/237 (40%), Gaps = 65/237 (27%)
Query: 396 TICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAKEAMKYQSLLTPDEGAKYDQLIELD 455
TI NM E GAT FP + Q++ELD
Sbjct: 218 TIANMAPEYGATCGFFPVD----------------------------------TQVVELD 243
Query: 456 LNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNASYED-MSRCASIA 514
L+T+EP V+GP P P++ + ++ I SCTN S M +A
Sbjct: 244 LSTVEPSVSGPKRPQDRVPLHG------------SVVIAAITSCTNTSNPSVMLAAGLLA 291
Query: 515 KEAMAHGLKSSTPF---NVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNR 571
K+A+ GLK P+ ++ PGS + +E G+ L + G V+ C CIG N
Sbjct: 292 KKAVELGLKVK-PYVKTSLAPGSRVVTKYLEASGLLPYLEKLGFHVVGYGCTTCIG--NS 348
Query: 572 KDVKMGEKNTI---------VNSYNRNFTGRNDANPATHA-FVTSPELVTALAIKGT 618
+ + I V S NRNF GR +P A ++ SP LV A A+ GT
Sbjct: 349 GPLPEEVEEAIKENDLVVAAVLSGNRNFEGR--IHPLVRANYLASPPLVVAYALAGT 403
>gnl|CDD|235490 PRK05478, PRK05478, isopropylmalate isomerase large subunit;
Validated.
Length = 466
Score = 124 bits (314), Expect = 6e-30
Identities = 119/475 (25%), Positives = 178/475 (37%), Gaps = 153/475 (32%)
Query: 201 AKYGVGFWHPGS---GIIHQIILENYA-FPGLLMIGTDSHTPNGGGLGGLCIGVGGADAV 256
++G+ + G GI+H + E PG+ ++ DSHT G G L G+G ++
Sbjct: 91 KEFGITLFDLGDPRQGIVHVVGPEQGLTLPGMTIVCGDSHTSTHGAFGALAFGIGTSEVE 150
Query: 257 DVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDN 316
V+A K PK + + + G L ++KD+IL + G + GGTG +IE+ G I
Sbjct: 151 HVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGYVIEFAGEAIRA 210
Query: 317 ISCTG-MGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGATT 375
+S G M TICNM E GA
Sbjct: 211 LSMEGRM----------------------------------------TICNMSIEAGA-- 228
Query: 376 SVFPYNQR---INIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAK- 431
R + D TT +++LK R K
Sbjct: 229 -------RAGLVAPD------------------ETT---------FEYLKG--RPFAPKG 252
Query: 432 ----EAMKYQSLLTPDEGAKYDQLIELDLNTLEPHV------------NGPFTPDLAHPI 475
+A+ Y L DE A +D+++ LD +EP V +G PD
Sbjct: 253 EDWDKAVAYWKTLKSDEDAVFDKVVTLDAADIEPQVTWGTNPGQVISIDGKV-PDPEDFA 311
Query: 476 NKLGEAAKKN---------GWPM-DIKVS--LIGSCTNASYEDMSRCASIAK-------- 515
+ + A+ + G P+ DIK+ IGSCTN+ ED+ A++ K
Sbjct: 312 DPVKRASAERALAYMGLKPGTPITDIKIDKVFIGSCTNSRIEDLRAAAAVVKGRKVAPGV 371
Query: 516 EAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFG------GTVLANACGPCIGQW 569
A+ V PGS ++A E +G+ + E G G C C+
Sbjct: 372 RAL-----------VVPGSGLVKAQAEAEGLDKIFIEAGFEWREPG------CSMCLAM- 413
Query: 570 NRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAIKGTLAFDPR 624
N + GE+ ++ NRNF GR TH + SP + A AI G D R
Sbjct: 414 NPDKLPPGER--CASTSNRNFEGRQGKGGRTH--LVSPAMAAAAAITGHFV-DVR 463
>gnl|CDD|238236 cd00404, Aconitase_swivel, Aconitase swivel domain. Aconitase
(aconitate hydratase) catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. This is the aconitase swivel domain, which
undergoes swivelling conformational change in the enzyme
mechanism. The aconitase family contains the following
proteins: - Iron-responsive element binding protein
(IRE-BP). IRE-BP is a cytosolic protein that binds to
iron-responsive elements (IREs). IREs are stem-loop
structures found in the 5'UTR of ferritin, and delta
aminolevulinic acid synthase mRNAs, and in the 3'UTR of
transferrin receptor mRNA. IRE-BP also express aconitase
activity. - 3-isopropylmalate dehydratase
(isopropylmalate isomerase), the enzyme that catalyzes
the second step in the biosynthesis of leucine. -
Homoaconitase (homoaconitate hydratase), an enzyme that
participates in the alpha-aminoadipate pathway of lysine
biosynthesis and that converts cis-homoaconitate into
homoisocitric acid.
Length = 88
Score = 99.1 bits (247), Expect = 8e-25
Identities = 46/76 (60%), Positives = 52/76 (68%)
Query: 767 AGVPWVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANP 826
P V +GDENYG GSSREHAALE R LGGRA+I KSFARI NL QGLLPL FA+P
Sbjct: 13 PAGPGVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADP 72
Query: 827 SDYDKIQPNDRISLVG 842
DY K+ D + +
Sbjct: 73 EDYLKLHTGDELDIYP 88
Score = 32.8 bits (75), Expect = 0.14
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 701 KVKGKCTTDHISAAGPW 717
KV G TTDHIS AGP
Sbjct: 1 KVAGNITTDHISPAGPG 17
>gnl|CDD|183125 PRK11413, PRK11413, putative hydratase; Provisional.
Length = 751
Score = 97.8 bits (244), Expect = 1e-20
Identities = 118/525 (22%), Positives = 195/525 (37%), Gaps = 148/525 (28%)
Query: 87 EKSLYLS---SLNKEEQYASWMAACRLASKGRTLADSSYEAEQTGP---HSRLRPDRVAM 140
EK +YL+ + EE + + +K T+A S + T +++ D +A
Sbjct: 6 EKGVYLASGNEIIAEEHFTG--EIKKEEAKKGTIAWSILSSHNTSGNMDKLKIKFDSLAS 63
Query: 141 QDAT----AQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGVEDLKRAKSQNEEVYAFL 196
D T Q A +SG+ R +P + H VGG + NE+ + F
Sbjct: 64 HDITFVGIIQTA----KASGMERFPLPYVLTNCHNSLCAVGG--------TINEDDHVFG 111
Query: 197 RSAGAKYGVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAV 256
SA KYG F P +IHQ + E A G +++G+DSHT G LG + +G GG + V
Sbjct: 112 LSAAQKYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHT-RYGALGTMAVGEGGGELV 170
Query: 257 DVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDN 316
+ + +++ P V+ V LTG +DV L AII
Sbjct: 171 KQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVAL-------------AII--------- 208
Query: 317 ISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGATTS 376
GA + + NK + E+ GPG+ +S
Sbjct: 209 ------------GAVFK---NGYVKNK-VMEFVGPGVSALST------------------ 234
Query: 377 VFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAKEAMKY 436
+ R +D M E +S++ + ++++L R E
Sbjct: 235 ----DFRNGVDV-----------MTTETTCLSSIWQTDEEVHNWLALHGRGQDYCE---- 275
Query: 437 QSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAK------------- 483
L P A YD I +DL+ ++P + PF P + I++L +
Sbjct: 276 ---LNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDELNQNLTDILREVEIESERV 332
Query: 484 -------------KNGWPMDIKV--SLIGSCTNASYEDMSRCASIAKEAMAHGLKSST-- 526
+NG +KV +I C+ +YE++ A A+ L+ +
Sbjct: 333 AHGKAKLSLLDKIENG---RLKVQQGIIAGCSGGNYENVI--------AAANALRGQSCG 381
Query: 527 ----PFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIG 567
+V P S+ + + + G+ L G + CGPC G
Sbjct: 382 NDTFSLSVYPSSQPVFMDLAKKGVVADLMGAGAIIRTAFCGPCFG 426
Score = 43.8 bits (104), Expect = 5e-04
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 780 GEGSSREHAALEPRHLGGRAIIVKSFA-RIHETNLKKQGLLPLTFANPSDYDKIQPNDRI 838
G+GS+RE AA R LGG A I + +A + + +N+ G+LP A + D I
Sbjct: 638 GDGSAREQAASCQRVLGGLANIAEEYATKRYRSNVINWGMLPFQMAEEPT---FEVGDYI 694
Query: 839 SLVGLKDLAPGKP--VTAQIKHADGKVEEIKL 868
+ G++ + H D V EI L
Sbjct: 695 YIPGIRAALDNPGTTFKGYVIHEDAPVTEITL 726
>gnl|CDD|153132 cd01582, Homoaconitase, Homoaconitase and other uncharacterized
proteins of the Aconitase family. Homoaconitase
catalytic domain. Homoaconitase and other
uncharacterized proteins of the Aconitase family.
Homoaconitase is part of an unusual lysine biosynthesis
pathway found only in filamentous fungi, in which lysine
is synthesized via the alpha-aminoadipate pathway. In
this pathway, homoaconitase catalyzes the conversion of
cis-homoaconitic acid into homoisocitric acid. The
reaction mechanism is believed to be similar to that of
other aconitases.
Length = 363
Score = 92.7 bits (230), Expect = 7e-20
Identities = 63/194 (32%), Positives = 95/194 (48%), Gaps = 13/194 (6%)
Query: 150 LQFISSGLPRVAVPSTIHC--DHLIEAQVGGVEDLKRAKSQNEEVYAFLRSAGAKYGVGF 207
L+F+S G ++ P I DH D++ +N + Y + S K+G+ F
Sbjct: 13 LKFMSIGATKIHNPDQIVMTLDH----------DVQNKSEKNLKKYKNIESFAKKHGIDF 62
Query: 208 WHPGSGIIHQIILEN-YAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWEL 266
+ G GI HQI++E YAFPG L + +DSH+ GG+G L + DA + A
Sbjct: 63 YPAGRGIGHQIMIEEGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWW 122
Query: 267 KCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTIC 326
+ P V V L G L + KDVI+ + G+ IE+ G G++++S TI
Sbjct: 123 QIPPVAKVELKGQLPKGVTGKDVIVALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIA 182
Query: 327 NMGAEIGATTSVFP 340
NM E GA + +FP
Sbjct: 183 NMTTEWGALSGLFP 196
Score = 81.1 bits (200), Expect = 4e-16
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 60/234 (25%)
Query: 396 TICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAKEAMKYQSLLTPDEGAKYDQLIELD 455
TI NM E GA + +FP + AK + LD
Sbjct: 180 TIANMTTEWGALSGLFPTD---------------AKH-------------------LILD 205
Query: 456 LNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIGSCTNASYEDMSRCASIAK 515
L+TL P+V+GP + ++ P+ +L +N + I + + SCTN+ D++ A + K
Sbjct: 206 LSTLSPYVSGPNSVKVSTPLKEL---EAQN---IKINKAYLVSCTNSRASDIAAAADVVK 259
Query: 516 EA--------MAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCI- 566
+A G++ F V S +++A E++G QTL E G T L CGPCI
Sbjct: 260 GKKEKNGKIPVAPGVE----FYVAAASSEVQAAAEKNGDWQTLLEAGATPLPAGCGPCIG 315
Query: 567 -GQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAIKGTL 619
GQ + ++G +++ NRNF GR + A++ SP +V A AI G +
Sbjct: 316 LGQGLLEPGEVG-----ISATNRNFKGRM-GSTEALAYLASPAVVAASAISGKI 363
>gnl|CDD|238812 cd01580, AcnA_IRP_Swivel, Aconitase A swivel domain. This is the
major form of the TCA cycle enzyme aconitate hydratase,
also known as aconitase and citrate hydro-lyase. It
includes bacterial and archaeal aconitase A, and the
eukaryotic cytosolic form of aconitase. This group also
includes sequences that have been shown to act as an
iron-responsive element (IRE) binding protein in animals
and may have the same role in other eukaryotes. This is
the aconitase-like swivel domain, which is believed to
undergo swivelling conformational change in the enzyme
mechanism.
Length = 171
Score = 85.8 bits (213), Expect = 3e-19
Identities = 51/170 (30%), Positives = 68/170 (40%), Gaps = 39/170 (22%)
Query: 707 TTDHISAAGPWLK-------------------------------FRGHLDNISN-NLFLT 734
TTDHIS AG K RG NI N
Sbjct: 7 TTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKL-- 64
Query: 735 ATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENYGEGSSREHAALEPRH 794
E + TG+ + + A YK GVP V + + YG GSSR+ AA P
Sbjct: 65 ---VPGTEGGTTHHPPTGEVMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFL 121
Query: 795 LGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDK--IQPNDRISLVG 842
LG +A+I +SF RIH +NL G+LPL F + D + + ++G
Sbjct: 122 LGVKAVIAESFERIHRSNLVGMGILPLQFPPGENADSLGLTGEETYDIIG 171
>gnl|CDD|223144 COG0066, LeuD, 3-isopropylmalate dehydratase small subunit [Amino
acid transport and metabolism].
Length = 191
Score = 65.7 bits (161), Expect = 4e-12
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 772 VAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDK 831
+ V EN+G GSSREHA + G RA+I SFA I N GLLP+ A +
Sbjct: 65 ILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNGLLPIVLAEEDVTEL 124
Query: 832 IQ--PNDRISLVGLKDLAPGKPVTAQIKHADGKVEEIKL 868
+ P D +++ DL T ++ + G E ++
Sbjct: 125 FEDVPGDEVTV----DL-----ETGEVTNPTGGEEPFEI 154
>gnl|CDD|238809 cd01577, IPMI_Swivel, Aconatase-like swivel domain of
3-isopropylmalate dehydratase and related
uncharacterized proteins. 3-isopropylmalate dehydratase
catalyzes the isomerization between 2-isopropylmalate
and 3-isopropylmalate, via the formation of
2-isopropylmaleate 3-isopropylmalate. IPMI is involved
in fungal and bacterial leucine biosynthesis and is also
found in eukaryotes. This is the aconitase-like swivel
domain, which is believed to undergo swivelling
conformational change in the enzyme mechanism.
Length = 91
Score = 60.7 bits (148), Expect = 2e-11
Identities = 25/49 (51%), Positives = 31/49 (63%)
Query: 774 VGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLT 822
V +N+G GSSREHA + G RA+I +SFARI N GLLP+T
Sbjct: 22 VAGKNFGCGSSREHAPWALKDAGIRAVIAESFARIFFRNAINNGLLPVT 70
>gnl|CDD|234762 PRK00439, leuD, 3-isopropylmalate dehydratase small subunit;
Reviewed.
Length = 163
Score = 58.7 bits (143), Expect = 6e-10
Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 774 VGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQ 833
V +N+G GSSREHA + + G A+I KSFARI N GL L DKI+
Sbjct: 53 VAGKNFGCGSSREHAPIALKAAGVSAVIAKSFARIFYRNAINIGLPVLEC--DEAVDKIE 110
Query: 834 PNDRISLVGLKDLAPG 849
D + + DL G
Sbjct: 111 DGDEVEV----DLETG 122
>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain. Domain commonly found in
eukaryotic signalling proteins. The domain family
possesses multiple functions including the abilities to
bind inositol phosphates, and various proteins. PH
domains have been found to possess inserted domains (such
as in PLC gamma, syntrophins) and to be inserted within
other domains. Mutations in Brutons tyrosine kinase (Btk)
within its PH domain cause X-linked agammaglobulinaemia
(XLA) in patients. Point mutations cluster into the
positively charged end of the molecule around the
predicted binding site for phosphatidylinositol lipids.
Length = 102
Score = 54.1 bits (130), Expect = 7e-09
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 984 YLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQ 1043
+L K++K+ + L +YKS++D + P L GC V +
Sbjct: 6 WLYKKSGGGK--KSWKKRYFVLFNSTLLYYKSKKDKKSYKPKGSIDLSGCTVREAPDPDS 63
Query: 1044 G--KFIIKLEVPAADGMSEMFLRCENEEQYASWMAACR 1079
+++ + L+ E+EE+ W+ A R
Sbjct: 64 SKKPHCFEIKTSDRK---TLLLQAESEEEREKWVEALR 98
>gnl|CDD|184460 PRK14023, PRK14023, homoaconitate hydratase small subunit;
Provisional.
Length = 166
Score = 54.8 bits (132), Expect = 1e-08
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 774 VGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQ 833
V N+G GSSRE+A + LG AII KS+ARI NL G+ P F + D ++
Sbjct: 54 VAGRNFGLGSSREYAPEALKMLGIGAIIAKSYARIFYRNLVNLGIPP--FESEEVVDALE 111
Query: 834 PNDRISL 840
D + L
Sbjct: 112 DGDEVEL 118
>gnl|CDD|223978 COG1049, AcnB, Aconitase B [Energy production and conversion].
Length = 852
Score = 56.3 bits (136), Expect = 8e-08
Identities = 104/433 (24%), Positives = 150/433 (34%), Gaps = 107/433 (24%)
Query: 209 HPGSGIIHQIILENYAFPGLLMIGTDSHT--------PNGGGLGGLCIGVGGADAVDVMA 260
PG G+IH L P + G DSHT P G GL V A A VM
Sbjct: 464 RPGDGVIHSW-LNRMLLPDTVGTGGDSHTRFPIGISFPAGSGL------VAFAAATGVMP 516
Query: 261 DIPWELKCPKVIGVRLTGGLKGWTSSKDVILKV------AGILTVKGGTGAIIEYHGPGI 314
L P+ + VR G ++ + +D++ + G+LTV+ G
Sbjct: 517 -----LDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKK----------GK 561
Query: 315 DNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGAT 374
NI ++ RI E G + ++ + + AE A
Sbjct: 562 KNI-----------------------FSGRILEIEG--LPDLKVEQAFELTDASAERSAA 596
Query: 375 TSVFPYNQRINID----NISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIA 430
N+ I+ NI + M AE Y + TL I
Sbjct: 597 GCTIKLNKEPIIEYLKSNIV-----LLKWMIAE--------GYGD------ARTLERRID 637
Query: 431 K--EAMKYQSLLTPDEGAKYDQLIELDLNTL-EPHVNGPFTPDLAHPINKLGEAAKKNGW 487
K + LL D A+Y +IE+DL + EP + P PD L E A
Sbjct: 638 KMEAWLANPELLEADADAEYAAVIEIDLADIKEPILAAPNDPDDVRL---LSEVAGD--- 691
Query: 488 PMDIKVSLIGSC-TNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGI 546
I IGSC TN + R A E L T V P ++ A + +G
Sbjct: 692 --KIDEVFIGSCMTNIGH---FRAAGKLLENAKGELP--TRLWVAPPTKMDAAQLTEEGY 744
Query: 547 AQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTS 606
+ G + C C+G N+ V G T+ ++ RNF R + ++ S
Sbjct: 745 YSIFGKAGARIEMPGCSLCMG--NQARVADGA--TVFSTSTRNFPNRLGKG--ANVYLAS 798
Query: 607 PELVTALAIKGTL 619
EL AI G +
Sbjct: 799 AELAAVCAILGKI 811
>gnl|CDD|215766 pfam00169, PH, PH domain. PH stands for pleckstrin homology.
Length = 101
Score = 50.9 bits (122), Expect = 8e-08
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 988 LKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGK-- 1045
LK K++K+ + + L +YK + + S P L GC+VT + GK
Sbjct: 8 LKKGSGGRKSWKKRYFVLFDGVLLYYKDSKKSS-SRPKGSIPLSGCQVTKVPDSEDGKRK 66
Query: 1046 FIIKLEVPAADGMSEMFLRCENEEQYASWMAACR 1079
++ L+ E+EE+ W+ A R
Sbjct: 67 NCFEIRTG---DRETFLLQAESEEERKEWVKAIR 97
>gnl|CDD|233716 TIGR02087, LEUD_arch, 3-isopropylmalate dehydratase, small subunit.
This subfamily is most closely related to the
3-isopropylmalate dehydratase, small subunits which form
TIGR00171. This subfamily includes the members of
TIGR02084 which are gene clustered with other genes of
leucine biosynthesis. The rest of the subfamily includes
mainly archaeal species which exhibit two hits to this
model. In these cases it is possible that one or the
other of the hits does not have a 3-isopropylmalate
dehydratase activity but rather one of the other related
aconitase-like activities.
Length = 154
Score = 52.0 bits (125), Expect = 1e-07
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 772 VAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDK 831
V V +N+G GSSRE AAL + G A+I +SFARI N GL + + +
Sbjct: 50 VIVAGKNFGCGSSREQAALALKAAGIAAVIAESFARIFYRNAINIGLPLIE----AKTEG 105
Query: 832 IQPNDRISL 840
I+ D +++
Sbjct: 106 IKDGDEVTV 114
>gnl|CDD|129223 TIGR00117, acnB, aconitate hydratase 2. Aconitate hydratase
(aconitase) is an enzyme of the TCA cycle. This model
describes aconitase 2, AcnB, which has weak similarity
to aconitase 1. It is found almost exclusively in the
Proteobacteria [Energy metabolism, TCA cycle].
Length = 844
Score = 53.4 bits (128), Expect = 7e-07
Identities = 103/448 (22%), Positives = 155/448 (34%), Gaps = 102/448 (22%)
Query: 209 HPGSGIIHQIILENYAFPGLLMIGTDSHT--------PNGGGLGGLCIGVGGADAVDVMA 260
PG G+IH L P + G DSHT P G GL V A A VM
Sbjct: 463 RPGDGVIHSW-LNRMLLPDTVGTGGDSHTRFPLGISFPAGSGL------VAFAAATGVMP 515
Query: 261 DIPWELKCPKVIGVRLTGGLKGWTSSKDVILKV------AGILTVKGGTGAIIEYHGPGI 314
L P+ + VR G ++ + +D++ + G+LTV
Sbjct: 516 -----LDMPESVLVRFKGEMQPGITLRDLVNAIPLYAIKQGLLTV--------------- 555
Query: 315 DNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIGAT 374
E +VF N RI E G + ++ + + AE A
Sbjct: 556 ----------------EKKGKKNVF--NGRILEIEG--LPDLKVEQAFELTDASAERSAA 595
Query: 375 TSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAK--E 432
N+ I+ ++ + + + M AE Y +R TL I +
Sbjct: 596 GCTIKLNKEPIIEYLN-SNIVLLKWMIAE--------GYGDR------RTLERRIQGMEK 640
Query: 433 AMKYQSLLTPDEGAKYDQLIELDLNTL-EPHVNGPFTPDLAHPINK-LGEAAKKNGWPMD 490
+ LL D A+Y +IE+DL + EP + P PD P+++ G+
Sbjct: 641 WLANPELLEADADAEYAAVIEIDLAEIKEPILAAPNDPDDVRPLSEVQGDK--------- 691
Query: 491 IKVSLIGSC-TNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQT 549
I IGSC TN + R A K A G + T V P + + +G
Sbjct: 692 IDEVFIGSCMTNIGH---FRAA--GKILDAAG-QLPTRLWVAPPTRMDEQQLTEEGYYSI 745
Query: 550 LREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPEL 609
G C C+G N+ V G T+ ++ RNF R + ++ S EL
Sbjct: 746 FGAAGARTEIPGCSLCMG--NQARVADGA--TVFSTSTRNFPNR--MGTGANVYLGSAEL 799
Query: 610 VTALAIKGTLAFDPRSDTLTGSDGKPFK 637
A+ G + T K
Sbjct: 800 AAVCALLGKIPTPEEYQTYVSEKDKTAV 827
>gnl|CDD|241231 cd00821, PH, Pleckstrin homology (PH) domain. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common fold,
which is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 92
Score = 47.7 bits (113), Expect = 8e-07
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 988 LKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFI 1047
K +K++K+ W + L +YKS++D+ P L V+ S
Sbjct: 6 KKRGGKGLKSWKKRWFVLFDDVLLYYKSKKDS-SKKPKGLIPLSDGLEVELVSSSGKPNC 64
Query: 1048 IKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
+L P D +L+ E+EE+ W+ A
Sbjct: 65 FELVTP--DRGRTYYLQAESEEEREEWLEA 92
>gnl|CDD|179314 PRK01641, leuD, isopropylmalate isomerase small subunit;
Provisional.
Length = 200
Score = 50.1 bits (121), Expect = 1e-06
Identities = 44/141 (31%), Positives = 60/141 (42%), Gaps = 34/141 (24%)
Query: 774 VGDENYGEGSSREHA--ALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDK 831
+ +N+G GSSREHA AL G RA+I SFA I N K GLLP+ D D+
Sbjct: 72 LAGDNFGCGSSREHAPWALA--DYGFRAVIAPSFADIFYNNCFKNGLLPIV-LPEEDVDE 128
Query: 832 IQPNDRISLVGLKDLAPGKPVT----AQIKHADGKVEEIKLN----HSM----------- 872
L L + PG +T AQ A K +++ H +
Sbjct: 129 --------LFKLVEANPGAELTVDLEAQTVTAPDKTFPFEIDPFRRHCLLNGLDDIGLTL 180
Query: 873 -NEQQITWFQAELPTRIPAWL 892
+E I ++A+ P P WL
Sbjct: 181 QHEDAIAAYEAKRPAFRP-WL 200
>gnl|CDD|236424 PRK09238, PRK09238, bifunctional aconitate hydratase
2/2-methylisocitrate dehydratase; Validated.
Length = 835
Score = 50.6 bits (122), Expect = 4e-06
Identities = 51/204 (25%), Positives = 76/204 (37%), Gaps = 27/204 (13%)
Query: 422 KATLREDIAK--EAMKYQSLLTPDEGAKYDQLIELDLNTL-EPHVNGPFTPDLAHPINKL 478
TL IA E + LL D A+Y +IE+DL + EP + P PD L
Sbjct: 627 ARTLERRIAAMEEWLANPELLEADADAEYAAVIEIDLAEIKEPILACPNDPDDVRL---L 683
Query: 479 GEAAKKNGWPMDIKVSLIGSC-TNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQI 537
E A I IGSC TN + + + T V P ++
Sbjct: 684 SEVAGTK-----IDEVFIGSCMTNI--GHFRAAGKLLEG---KKGQLPTRLWVAPPTKMD 733
Query: 538 RATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGR--ND 595
+ +G + G + C C+G N+ V + T+ ++ RNF R
Sbjct: 734 ADQLTEEGYYSIFGKAGARIEMPGCSLCMG--NQARV--ADGATVFSTSTRNFPNRLGKG 789
Query: 596 ANPATHAFVTSPELVTALAIKGTL 619
AN ++ S EL A+ G +
Sbjct: 790 AN----VYLGSAELAAVCALLGRI 809
Score = 34.4 bits (80), Expect = 0.45
Identities = 39/124 (31%), Positives = 51/124 (41%), Gaps = 34/124 (27%)
Query: 209 HPGSGIIHQIILENYAFPGLLMIGTDSHT--------PNGGGLGGLCIGVGGADAVDVMA 260
PG G+IH L P + G DSHT P G GL V A A VM
Sbjct: 462 RPGDGVIHS-WLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGL------VAFAAATGVMP 514
Query: 261 -DIPWELKCPKVIGVRLTGGLKGWTSSKDV---ILKVA---GILTV--KGG----TGAII 307
D+P + VR G ++ + +D+ I A G+LTV KG +G I+
Sbjct: 515 LDMPESVL------VRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRIL 568
Query: 308 EYHG 311
E G
Sbjct: 569 EIEG 572
>gnl|CDD|153131 cd01581, AcnB, Aconitate hydratase B catalyses the formation of
cis-aconitate from citrate as part of the TCA cycle.
Aconitase B catalytic domain. Aconitate hydratase B
catalyses the formation of cis-aconitate from citrate as
part of the TCA cycle. Aconitase has an active (4FE-4S)
and an inactive (3FE-4S) form. The active cluster is
part of the catalytic site that interconverts citrate,
cis-aconitase and isocitrate. The domain architecture of
aconitase B is different from other aconitases in that
the catalytic domain is normally found at C-terminus for
other aconitases, but it is at N-terminus for B family.
It also has a HEAT domain before domain 4 which plays a
role in protein-protein interaction. This alignment is
the core domain including domains 1,2 and 3.
Length = 436
Score = 49.4 bits (118), Expect = 7e-06
Identities = 100/433 (23%), Positives = 152/433 (35%), Gaps = 98/433 (22%)
Query: 204 GVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHT--------PNGGGLGGLCIGVGGADA 255
G PG G+IH L P + G DSHT P G GL V A A
Sbjct: 85 GGVALRPGDGVIHSW-LNRMLLPDTVGTGGDSHTRFPIGISFPAGSGL------VAFAAA 137
Query: 256 VDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKV------AGILTVKGGTGAIIEY 309
VM L P+ + VR G ++ + +D++ + G+LTV+
Sbjct: 138 TGVMP-----LDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGK----- 187
Query: 310 HGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGA 369
N+ +N RI E G + ++ + + A
Sbjct: 188 -----KNV-----------------------FNGRILEIEG--LPDLKVEQAFELTDASA 217
Query: 370 EIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDI 429
E A ++ I+ + + + + M A YD + LR I
Sbjct: 218 ERSAAACTVRLDKEPVIEYLE-SNVVLMKIMIAN-------------GYDDARTLLRRII 263
Query: 430 AKEA-MKYQSLLTPDEGAKYDQLIELDLNTL-EPHVNGPFTPDLAHPINKLGEAAKKNGW 487
A E + LL PD A+Y +IE+DL+ + EP + P PD L E A K
Sbjct: 264 AMEEWLANPPLLEPDADAEYAAVIEIDLDDIKEPILACPNDPDDVKL---LSEVAGKK-- 318
Query: 488 PMDIKVSLIGSC-TNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGI 546
I IGSC TN + A + + T V P + A ++ +G
Sbjct: 319 ---IDEVFIGSCMTNIGH------FRAAAKILRGKEFKPTRLWVAPPTRMDWAILQEEGY 369
Query: 547 AQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTS 606
+ G C C+G N+ V G T+ ++ RNF R ++ S
Sbjct: 370 YSIFGDAGARTEMPGCSLCMG--NQARVADGA--TVFSTSTRNFDNRVGKG--AEVYLGS 423
Query: 607 PELVTALAIKGTL 619
EL A+ G +
Sbjct: 424 AELAAVCALLGRI 436
>gnl|CDD|131139 TIGR02084, leud, 3-isopropylmalate dehydratase, small subunit.
Homoaconitase, aconitase, and 3-isopropylmalate
dehydratase have similar overall structures. All are
dehydratases (EC 4.2.1.-) and bind a Fe-4S iron-sulfur
cluster. 3-isopropylmalate dehydratase is split into
large (leuC) and small (leuD) chains in eubacteria.
Several pairs of archaeal proteins resemble the leuC and
leuD pair in length and sequence but even more closely
resemble the respective domains of homoaconitase, and
their identity is uncertain. The members of the seed for
this model are those sequences which are gene clustered
with other genes involved in leucine biosynthesis and
include some archaea [Amino acid biosynthesis, Pyruvate
family].
Length = 156
Score = 45.9 bits (109), Expect = 1e-05
Identities = 22/47 (46%), Positives = 27/47 (57%)
Query: 772 VAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGL 818
+ V EN+G GSSREHA + + G +I KSFARI N GL
Sbjct: 50 IIVAGENFGCGSSREHAPIAIKASGISCVIAKSFARIFYRNAINIGL 96
>gnl|CDD|129275 TIGR00171, leuD, 3-isopropylmalate dehydratase, small subunit.
Homoaconitase, aconitase, and 3-isopropylmalate
dehydratase have similar overall structures. All are
dehydratases (EC 4.2.1.-) and bind a Fe-4S iron-sulfur
cluster. 3-isopropylmalate dehydratase is split into
large (leuC) and small (leuD) chains in eubacteria.
Several pairs of archaeal proteins resemble the leuC and
leuD pair in length and sequence but even more closely
resemble the respective domains of homoaconitase, and
their identity is uncertain. The candidate archaeal leuD
proteins are not included in the seed alignment for this
model and score below the trusted cutoff [Amino acid
biosynthesis, Pyruvate family].
Length = 188
Score = 43.7 bits (103), Expect = 1e-04
Identities = 23/58 (39%), Positives = 28/58 (48%)
Query: 777 ENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQP 834
EN+G GSSREHA G + II SFA I N K GLLP+ + +
Sbjct: 77 ENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNGLLPIRLSYDEVKELFGQ 134
>gnl|CDD|215053 PLN00094, PLN00094, aconitate hydratase 2; Provisional.
Length = 938
Score = 43.4 bits (102), Expect = 7e-04
Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 21/183 (11%)
Query: 439 LLTPDEGAKYDQLIELDLNTL-EPHVNGPFTPDLAHPINKLGEAAKKNGWPMDIKVSLIG 497
LL D A+Y +IE+D++ + EP + P PD A ++++ K I IG
Sbjct: 720 LLEADPDAEYAAVIEIDMDEIKEPILCAPNDPDDARLLSEV--TGDK------IDEVFIG 771
Query: 498 SC-TNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGT 556
SC TN + R A K + + T V P ++ A ++ +G T G
Sbjct: 772 SCMTNIGH---FRAA--GKLLNDNLSQLPTRLWVAPPTKMDEAQLKAEGYYSTFGTVGAR 826
Query: 557 VLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAIK 616
C C+G R + EK+T+V++ RNF R + ++ S EL AI
Sbjct: 827 TEMPGCSLCMGNQAR----VAEKSTVVSTSTRNFPNR--LGKGANVYLASAELAAVAAIL 880
Query: 617 GTL 619
G L
Sbjct: 881 GRL 883
>gnl|CDD|177701 PLN00072, PLN00072, 3-isopropylmalate isomerase/dehydratase small
subunit; Provisional.
Length = 246
Score = 41.4 bits (97), Expect = 0.001
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 772 VAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARI 808
+ +G EN+G GSSREHA + G +A++ +S+ARI
Sbjct: 132 IIIGGENFGCGSSREHAPVALGAAGAKAVVAESYARI 168
>gnl|CDD|241455 cd13301, PH1_Pleckstrin_2, Pleckstrin 2 Pleckstrin homology (PH)
domain, repeat 1. Pleckstrin is a protein found in
platelets. This name is derived from platelet and
leukocyte C kinase substrate and the KSTR string of amino
acids. Pleckstrin 2 contains two PH domains and a DEP
(dishvelled, egl-10, and pleckstrin) domain. Unlike
pleckstrin 1, pleckstrin 2 does not contain obvious sites
of PKC phosphorylation. Pleckstrin 2 plays a role in
actin rearrangement, large lamellipodia and peripheral
ruffle formation, and may help orchestrate cytoskeletal
arrangement. The PH domains of pleckstrin 2 are thought
to contribute to lamellipodia formation. This cd contains
the first PH domain repeat. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 108
Score = 38.9 bits (91), Expect = 0.002
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 998 YKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVT-PDVNLSQGKFIIKLEVPAAD 1056
+K W E +L +YK + D SSP L+GC +T P + + + KL A
Sbjct: 19 WKARWFVLLEDKLEYYKKKTD---SSPKGMILLKGCTITSPCLEYEKRPLVFKLT--TAK 73
Query: 1057 GMSEMFLRCENEEQYASWMAACRLQLTE 1084
G + FL+ + E+ +W +T
Sbjct: 74 G-QDHFLQACSREERDAWAKDITKAITC 100
>gnl|CDD|241461 cd13307, PH2_AFAP, Actin filament associated protein family
Pleckstrin homology (PH) domain, repeat 2. There are 3
members of the AFAP family of adaptor proteins: AFAP1,
AFAP1L1, and AFAP1L2/XB130. AFAP1 is a cSrc binding
partner and actin cross-linking protein. AFAP1L1 is
thought to play a similar role to AFAP1 in terms of being
an actin cross-linking protein, but it preferentially
binds to cortactin and not cSrc, thereby playing a role
in invadosome formation. AFAP1L2 is a cSrc binding
protein, but does not bind to actin filaments. AFAP1L2
acts as an intermediary between the RET/PTC kinase and
PI-3kinase pathway in the thyroid. The AFAPs share a
similar structure of a SH3 binding motif, 3 SH2 binding
motifs, 2 PH domains, a coiled-coil region corresponding
to the AFAP1 leucine zipper, and an actin binding domain.
This cd is the second PH domain of AFAP. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common fold,
which is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 101
Score = 38.5 bits (90), Expect = 0.002
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 998 YKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVN---------LSQGKFII 1048
++ W ++ QL FY+ R + SP LRGCEV P + L G+ +
Sbjct: 16 WRSRWCCVKDGQLHFYQDRNKLK--SPQQPLPLRGCEVIPGPDPKHPYSFRILRNGEEVA 73
Query: 1049 KLEVPAADGM 1058
LE +++ M
Sbjct: 74 VLEASSSEDM 83
>gnl|CDD|220215 pfam09379, FERM_N, FERM N-terminal domain. This domain is the
N-terminal ubiquitin-like structural domain of the FERM
domain.
Length = 79
Score = 36.0 bits (84), Expect = 0.009
Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 17/74 (22%)
Query: 860 DGKVEEIKLNHSMNEQQI------------TWF---QAELPTRIPAWLDSSLSIYEQGVK 904
DG E ++ S Q++ + Q WLD + +QG
Sbjct: 5 DGTQLEFTVDKSATGQELLDQVCQRLGLREKDYFGLQFNDKKNERIWLDLDKKLRKQGKD 64
Query: 905 EFD--TLRLRFKFY 916
TL R KFY
Sbjct: 65 GDPPFTLFFRVKFY 78
>gnl|CDD|241307 cd10571, PH_beta_spectrin, Beta-spectrin pleckstrin homology (PH)
domain. Beta spectrin binds actin and functions as a
major component of the cytoskeleton underlying cellular
membranes. Beta spectrin consists of multiple spectrin
repeats followed by a PH domain, which binds to
inositol-1,4,5-trisphosphate. The PH domain of
beta-spectrin is thought to play a role in the
association of spectrin with the plasma membrane of
cells. PH domains have diverse functions, but in general
are involved in targeting proteins to the appropriate
cellular location or in the interaction with a binding
partner. They share little sequence conservation, but all
have a common fold, which is electrostatically polarized.
Less than 10% of PH domains bind phosphoinositide
phosphates (PIPs) with high affinity and specificity. PH
domains are distinguished from other PIP-binding domains
by their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH domain
proteins to the plasma membrane. A few display strong
specificity in lipid binding. Any specificity is usually
determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 105
Score = 36.0 bits (84), Expect = 0.016
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 19/93 (20%)
Query: 996 KAYKRLWVTC----RELQLRFYKSREDA-----QHSSPINEFSLRGCEVTPDVNLSQGK- 1045
KA R W + +L FYK ++ A P+N L G + + K
Sbjct: 17 KASNRSWKKVYCVLKGQELSFYKDQKAAASESYAGEPPLN---LSGAVCEVASDYKKKKH 73
Query: 1046 -FIIKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
F ++L +DG SE + ++EE+ W+
Sbjct: 74 VFRLRL----SDG-SEYLFQAKDEEEMNDWVQK 101
>gnl|CDD|173273 PRK14812, PRK14812, hypothetical protein; Provisional.
Length = 119
Score = 35.1 bits (80), Expect = 0.043
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 20/113 (17%)
Query: 782 GSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYD----KIQPNDR 837
GSSREHAA G + +I SF IH N G+LP+ P + +++P D+
Sbjct: 3 GSSREHAAWALADYGFKVVIAGSFGDIHYNNELNNGMLPIV--QPREVREKLAQLKPTDQ 60
Query: 838 IS--LVGLKDLAPGKPVTAQI----KHADGKVEEIKLNHSMNEQQITWFQAEL 884
++ L K ++P + T +I KH KL +S+++ IT EL
Sbjct: 61 VTVDLEQQKIISPVEEFTFEIDSEWKH--------KLLNSLDDIGITLQYEEL 105
>gnl|CDD|218073 pfam04412, DUF521, Protein of unknown function (DUF521). Family of
hypothetical proteins.
Length = 397
Score = 36.4 bits (85), Expect = 0.085
Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 14/102 (13%)
Query: 498 SCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTV 557
C +AS E+ +A+ P VT S + + ER G L G V
Sbjct: 293 GCPHASLEE---LRELAELLAGRKKAPGVPLWVTT-SRAVYSKAERAGYVDRLEAAGVKV 348
Query: 558 LANACGPCIGQWNRKDVKMGEKNTIVNS-----YNRNFTGRN 594
+ + C + K G + + NS Y G +
Sbjct: 349 VTDTC-MVVSPIIPK----GTRVVMTNSGKAAHYLPGMCGVD 385
>gnl|CDD|241453 cd13299, PH2_PH_fungal, Fungal proteins Pleckstrin homology (PH)
domain, repeat 2. The functions of these fungal proteins
are unknown, but they all contain 2 PH domains. This cd
represents the second PH repeat. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 102
Score = 32.6 bits (75), Expect = 0.26
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 21/103 (20%)
Query: 984 YLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSRED--AQHSSPINEFSLRGCEVTPDVN- 1040
YL+ LK K +K+ W+ R L FYK + + PI++ +V +++
Sbjct: 11 YLQVLKKKGV--NQWKKYWLVLRNRSLSFYKDQSEYSPVKIIPIDDI----IDVV-ELDP 63
Query: 1041 LSQGK----FIIKLEVPAADGMSEMFLRCENEEQYASWMAACR 1079
LS+ K II E + ++EE W+ A +
Sbjct: 64 LSKSKKWCLQIITPEKR-------IRFCADDEESLIKWLGALK 99
>gnl|CDD|241402 cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate binding proteins
1, 2, and 3 pleckstrin homology (PH) domain. PEPP1 (also
called PLEKHA4/PH domain-containing family A member 4 and
RHOXF1/Rhox homeobox family member 1), and related
homologs PEPP2 (also called PLEKHA5/PH domain-containing
family A member 5) and PEPP3 (also called PLEKHA6/PH
domain-containing family A member 6), have PH domains
that interact specifically with PtdIns(3,4)P3. Other
proteins that bind PtdIns(3,4)P3 specifically are: TAPP1
(tandem PH-domain-containing protein-1) and TAPP2],
PtdIns3P AtPH1, and Ptd- Ins(3,5)P2 (centaurin-beta2).
All of these proteins contain at least 5 of the 6
conserved amino acids that make up the putative
phosphatidylinositol 3,4,5- trisphosphate-binding motif
(PPBM) located at their N-terminus. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common fold,
which is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 104
Score = 32.6 bits (75), Expect = 0.27
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 994 TMKAYKRLWVTCRELQLRFYKSRED--AQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLE 1051
+K +K+ W ++ L +YK E+ A S + +++ + ++N KF K E
Sbjct: 20 GLKNWKKRWFVLKDNCLYYYKDPEEEKALGSILLPSYTISPASPSDEINR---KFAFKAE 76
Query: 1052 VPAADGMSEMFLRCENEEQYASWMAA 1077
GM + + +E+ WM A
Sbjct: 77 HA---GMRTYYFAADTQEEMEQWMKA 99
>gnl|CDD|241309 cd10573, PH_DAPP1, Dual Adaptor for Phosphotyrosine and
3-Phosphoinositides Pleckstrin homology (PH) domain.
DAPP1 (also known as PHISH/3'
phosphoinositide-interacting SH2 domain-containing
protein or Bam32) plays a role in B-cell activation and
has potential roles in T-cell and mast cell function.
DAPP1 promotes B cell receptor (BCR) induced activation
of Rho GTPases Rac1 and Cdc42, which feed into
mitogen-activated protein kinases (MAPK) activation
pathways and affect cytoskeletal rearrangement. DAPP1can
also regulate BCR-induced activation of extracellular
signal-regulated kinase (ERK), and c-jun NH2-terminal
kinase (JNK). DAPP1 contains an N-terminal SH2 domain and
a C-terminal pleckstrin homology (PH) domain with a
single tyrosine phosphorylation site located centrally.
DAPP1 binds strongly to both PtdIns(3,4,5)P3 and
PtdIns(3,4)P2. The PH domain is essential for plasma
membrane recruitment of PI3K upon cell activation. PH
domains have diverse functions, but in general are
involved in targeting proteins to the appropriate
cellular location or in the interaction with a binding
partner. They share little sequence conservation, but all
have a common fold, which is electrostatically polarized.
Less than 10% of PH domains bind phosphoinositide
phosphates (PIPs) with high affinity and specificity. PH
domains are distinguished from other PIP-binding domains
by their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH domain
proteins to the plasma membrane. A few display strong
specificity in lipid binding. Any specificity is usually
determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 96
Score = 31.9 bits (73), Expect = 0.31
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 993 FTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGC-EVTPDVNLSQGKF 1046
+K +K W R+ +L+++K+R D + PI L C V D SQGK
Sbjct: 14 GIVKNWKTRWFVLRKNELKYFKTRTD---TKPIRTLDLTECSSVQADY--SQGKP 63
>gnl|CDD|214604 smart00295, B41, Band 4.1 homologues. Also known as
ezrin/radixin/moesin (ERM) protein domains. Present in
myosins, ezrin, radixin, moesin, protein tyrosine
phosphatases. Plasma membrane-binding domain. These
proteins play structural and regulatory roles in the
assembly and stabilization of specialized plasmamembrane
domains. Some PDZ domain containing proteins bind one or
more of this family. Now includes JAKs.
Length = 201
Score = 33.8 bits (78), Expect = 0.33
Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 31/145 (21%)
Query: 891 WLDSSLSIYEQGVK-EFDTLRLRFKFYSIYDLNAKTDAVQVNL-----QSNV----AQPT 940
WLD + ++ +Q VK E TL R KFY K D ++NL ++++
Sbjct: 55 WLDPAKTLLDQDVKSEPLTLYFRVKFYPPDPNQLKEDPTRLNLLYLQVRNDILEGRLPCP 114
Query: 941 DTSSISLADDDIDAALTDLQVTLEGSHISLASPDIMHVPELYDYLRCLKPKRFTMKAYKR 1000
+ ++ L AAL LQ G + ++ + R L PK+ +
Sbjct: 115 EEEALLL------AAL-ALQA-EFGDY----DEELHDLRGELSLKRFL-PKQLLDSRKLK 161
Query: 1001 LWVTCRELQLRFYK-----SREDAQ 1020
W RE + +K S E+A+
Sbjct: 162 EW---RERIVELHKELIGLSPEEAK 183
>gnl|CDD|241452 cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin homology (PH)
domain, repeat 1. The functions of these fungal proteins
are unknown, but they all contain 2 PH domains. This cd
represents the first PH repeat. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 106
Score = 31.8 bits (73), Expect = 0.39
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 994 TMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTP--DVNLSQGKFIIKLE 1051
K +K+ W R QL +YK D + +L E+T + + K + +
Sbjct: 18 KTKTWKKRWFVLRPCQLSYYK---DEKEYKLRRVINLS--ELTAVAPLKDKKRKNVFAIY 72
Query: 1052 VPAADGMSEMF-LRCENEEQYASWMAACR 1079
P S+ + + +E+ W+ A R
Sbjct: 73 TP-----SKNYHFQASSEKDANEWVEAIR 96
>gnl|CDD|241529 cd13378, PH_RhoGAP2, Rho GTPase activating protein 2 Pleckstrin
homology (PH) domain. RhoGAP2 (also called RhoGap22 or
ArhGap22) are involved in cell polarity, cell morphology
and cytoskeletal organization. They activate a GTPase
belonging to the RAS superfamily of small GTP-binding
proteins. The encoded protein is insulin-responsive, is
dependent on the kinase Akt, and requires the
Akt-dependent 14-3-3 binding protein which binds
sequentially to two serine residues resulting in
regulation of cell motility. Members here contain an
N-terminal PH domain followed by a RhoGAP domain and
either a BAR or TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) domain. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 116
Score = 31.8 bits (72), Expect = 0.50
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 988 LKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVT 1036
LK +R MK +++ W R QL +YK E+ + P SL+G +V
Sbjct: 9 LKKQRSIMKNWQQRWFVLRGDQLFYYKDEEETK---PQGCISLQGSQVN 54
>gnl|CDD|218625 pfam05531, NPV_P10, Nucleopolyhedrovirus P10 protein. This family
consists of several nucleopolyhedrovirus P10 proteins
which are thought to be involved in the morphogenesis of
the polyhedra.
Length = 75
Score = 30.8 bits (70), Expect = 0.58
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 918 IYDLNAKTDAVQVNLQSNVAQPTDTSSISLADDDIDAALTDLQVTLEGSHISLASPDIMH 977
I ++ K DA+Q + A D + ++ D A LT LQ + S+ +PDI
Sbjct: 13 IKAVDDKVDALQTQVDDLRANLPDVTELNEKLDAQSAQLTTLQTKVTNIQ-SILNPDI-- 69
Query: 978 VPELYD 983
VP+L D
Sbjct: 70 VPDLPD 75
>gnl|CDD|241391 cd13237, PH2_FGD5_FGD6, FYVE, RhoGEF and PH domain
containing/faciogenital dysplasia proteins 5 and 6
pleckstrin homology (PH) domain, C-terminus. FGD5
regulates promotes angiogenesis of vascular endothelial
growth factor (VEGF) in vascular endothelial cells,
including network formation, permeability, directional
movement, and proliferation. The specific function of
FGD6 is unknown. In general, FGDs have a RhoGEF (DH)
domain, followed by a PH domain, a FYVE domain and a
C-terminal PH domain. All FGDs are guanine nucleotide
exchange factors that activate the Rho GTPase Cdc42, an
important regulator of membrane trafficking. The RhoGEF
domain is responsible for GEF catalytic activity, while
the PH domain is involved in intracellular targeting of
the DH domain. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 90
Score = 31.2 bits (71), Expect = 0.61
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 17/99 (17%)
Query: 984 YL-RCLKPKRFTMKAYKRLWVTCRELQLRFYKSRED--AQHSSPINEFSLRGCEVTP--D 1038
YL R + K K++KRLW ++ L YK+ ED A S P L G V P +
Sbjct: 4 YLYRRKRKK----KSWKRLWFVLKDKVLYTYKASEDVVALESIP-----LLGYTVVPAKE 54
Query: 1039 VNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
+ +L G R ++ E W+ A
Sbjct: 55 GFEGDESLVFQLLHK---GQLPYIFRADDAETAQRWIEA 90
>gnl|CDD|241294 cd01263, PH_anillin, Anillin Pleckstrin homology (PH) domain.
Anillin (Rhotekin/RTKN; also called PLEKHK/Pleckstrin
homology domain-containing family K) is an actin binding
protein involved in cytokinesis. It interacts with
GTP-bound Rho proteins and results in the inhibition of
their GTPase activity. Dysregulation of the Rho signal
transduction pathway has been implicated in many forms of
cancer. Anillin proteins have a N-terminal HRI domain/ACC
(anti-parallel coiled-coil) finger domain or Rho-binding
domain binds small GTPases from the Rho family. The
C-terminal PH domain helps target anillin to ectopic
septin containing foci. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 119
Score = 31.5 bits (72), Expect = 0.65
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 1000 RLWVTCRELQLRFYKSREDAQHSSPINEFSLRGC---EVTPDVNLSQGK---FIIKLEVP 1053
R W R L F+K ED + PI LR C +V P + F ++ P
Sbjct: 22 RRWCVLRGGYLSFWKYPEDEEKKKPIGSIDLRKCINEKVEPASRELCARPNTFELETLRP 81
Query: 1054 AADGMSEM-----FLRCENEEQYASWMAA 1077
A D L + +E+ W+ A
Sbjct: 82 AEDSDGTNEKKRVLLSADTKEERIEWLDA 110
>gnl|CDD|203329 pfam05790, C2-set, Immunoglobulin C2-set domain.
Length = 78
Score = 30.4 bits (69), Expect = 0.87
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 35 VSWNGNVSTL--EMLNGSLDSSLACSPSSPCKEARAKLVKPKSLV 77
V+ + + + L E+L +L+ PS K AK + K L
Sbjct: 1 VTVSCSNNLLTCEVLELTLEKPPKMDPSLKLKGQEAKSSETKKLE 45
>gnl|CDD|241284 cd01253, PH_ARHGAP21-like, ARHGAP21 and related proteins pleckstrin
homology (PH) domain. ARHGAP family genes encode
Rho/Rac/Cdc42-like GTPase activating proteins with a
RhoGAP domain. These proteins functions as a
GTPase-activating protein (GAP) for RHOA and CDC42.
ARHGAP21 controls the Arp2/3 complex and F-actin dynamics
at the Golgi complex by regulating the activity of the
small GTPase Cdc42. It is recruited to the Golgi by to
GTPase, ARF1, through its PH domain and its helical
motif. It is also required for CTNNA1 recruitment to
adherens junctions. ARHGAP21 and it related proteins all
contains a PH domain and a RhoGAP domain. Some of the
members have additional N-terminal domains including PDZ,
SH3, and SPEC. The ARHGAP21 PH domain interacts with the
GTPbound forms of both ARF1 and ARF6 ARF-binding
domain/ArfBD. The members here include: ARHGAP15,
ARHGAP21, and ARHGAP23. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 113
Score = 31.1 bits (71), Expect = 0.90
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 16/102 (15%)
Query: 989 KPKRFTMKAYKRLWVTCRELQLRFYK-SREDAQHSSPINE----FSLRGCEVTPDVNLSQ 1043
K KR + +++K++W R L YK RE + S + +R C D+ S
Sbjct: 15 KGKRASDRSWKQVWAVLRGHSLYLYKDKRETSPALSAAEDSEQRIDIRSC--IVDIAYSY 72
Query: 1044 GK----FIIKLEVPAADGMSEMFLRCENEEQYASWMAACRLQ 1081
K F + +DG SE + E+ + W+ A +
Sbjct: 73 TKRKNVFRLT----TSDG-SEYLFQAEDRDDMLGWIKAIQEN 109
>gnl|CDD|241462 cd13308, PH_3BP2, SH3 domain-binding protein 2 Pleckstrin homology
(PH) domain. SH3BP2 (the gene that encodes the adaptor
protein 3BP2), HD, ITU, IT10C3, and ADD1 are located near
the Huntington's Disease Gene on Human Chromosome 4pl6.3.
SH3BP2 lies in a region that is often missing in
individuals with Wolf-Hirschhorn syndrome (WHS). Gain of
function mutations in SH3BP2 causes enhanced B-cell
antigen receptor (BCR)-mediated activation of nuclear
factor of activated T cells (NFAT), resulting in a rare,
genetic disorder called cherubism. This results in an
increase in the signaling complex formation with Syk,
phospholipase C-gamma2 (PLC-gamma2), and Vav1. It was
recently discovered that Tankyrase regulates 3BP2
stability through ADP-ribosylation and ubiquitylation by
the E3-ubiquitin ligase. Cherubism mutations uncouple
3BP2 from Tankyrase-mediated protein destruction, which
results in its stabilization and subsequent
hyperactivation of the Src, Syk, and Vav signaling
pathways. SH3BP2 is also a potential negative regulator
of the abl oncogene. PH domains have diverse functions,
but in general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 113
Score = 30.8 bits (70), Expect = 1.0
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 1012 FYKSREDAQHSSPINEFSLRG--CEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEE 1069
++K+ + A P FSL G + + KF+ K+ + D + ++E+
Sbjct: 42 YFKNSQSA---KPKGVFSLNGYNRRAAEETTSKK-KFVFKIIHLSKD-HRTWYFSAKSED 96
Query: 1070 QYASWMAACRLQLTENN 1086
+ WM + R ++
Sbjct: 97 EMKEWMESLRKEIDRYC 113
>gnl|CDD|241389 cd13235, PH2_FARP1-like, FERM, RhoGEF and pleckstrin
domain-containing protein 1 and related proteins
Pleckstrin Homology (PH) domain, repeat 2. Members here
include FARP1 (also called Chondrocyte-derived ezrin-like
protein; PH domain-containing family C member 2), FARP2
(also called FIR/FERM domain including RhoGEF;
FGD1-related Cdc42-GEF/FRG), and FARP6 (also called Zinc
finger FYVE domain-containing protein 24). They are
members of the Dbl family guanine nucleotide exchange
factors (GEFs) which are upstream positive regulators of
Rho GTPases. Little is known about FARP1 and FARP6,
though FARP1 has increased expression in differentiated
chondrocytes. FARP2 is thought to regulate neurite
remodeling by mediating the signaling pathways from
membrane proteins to Rac. It is found in brain, lung, and
testis, as well as embryonic hippocampal and cortical
neurons. FARP1 and FARP2 are composed of a N-terminal
FERM domain, a proline-rich (PR) domain, Dbl-homology
(DH), and two C-terminal PH domains. FARP6 is composed of
Dbl-homology (DH), and two C-terminal PH domains
separated by a FYVE domain. This hierarchy contains the
second PH repeat. PH domains have diverse functions, but
in general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 113
Score = 30.7 bits (70), Expect = 1.1
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 998 YKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVT-PDVNLSQGK-FIIKLEVPAA 1055
+++LWV L FYKS +D P+ L G V P + K ++ KL+
Sbjct: 34 WQKLWVVFTNFCLFFYKSHQD---EFPLASLPLLGYSVGLPSEADNIDKDYVFKLQF--- 87
Query: 1056 DGMSEMFLRCENEEQYASWM 1075
F R E+E + WM
Sbjct: 88 -KSHVYFFRAESEYTFERWM 106
>gnl|CDD|241417 cd13263, PH_RhoGap25-like, Rho GTPase activating protein 25 and
related proteins Pleckstrin homology (PH) domain.
RhoGAP25 (also called ArhGap25) like other RhoGaps are
involved in cell polarity, cell morphology and
cytoskeletal organization. They act as GTPase activators
for the Rac-type GTPases by converting them to an
inactive GDP-bound state and control actin remodeling by
inactivating Rac downstream of Rho leading to suppress
leading edge protrusion and promotes cell retraction to
achieve cellular polarity and are able to suppress RAC1
and CDC42 activity in vitro. Overexpression of these
proteins induces cell rounding with partial or complete
disruption of actin stress fibers and formation of
membrane ruffles, lamellipodia, and filopodia. This
hierarchy contains RhoGAP22, RhoGAP24, and RhoGAP25.
Members here contain an N-terminal PH domain followed by
a RhoGAP domain and either a BAR or TATA Binding Protein
(TBP) Associated Factor 4 (TAF4) domain. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common fold,
which is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains. PH
domains are found in cellular signaling proteins such as
serine/threonine kinase, tyrosine kinases, regulators of
G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid associated
enzymes.
Length = 114
Score = 30.4 bits (69), Expect = 1.4
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 988 LKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVT--PDVNLSQGK 1045
LK + +K ++R W R QL +YK ++++ I L G V P GK
Sbjct: 9 LKKQGGIVKNWQRRWFVLRGDQLYYYKDEDESKPQGCI---PLPGNTVKELPFNPEEPGK 65
Query: 1046 FIIKLEVPAADGMS-----EMFLRCENEEQ 1070
F+ + +P G + +L N +
Sbjct: 66 FLFE-IIPGDGGTRRSANHDSYLLMANSQA 94
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 32.3 bits (74), Expect = 1.6
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 838 ISLVGLKDLAPGKPVTAQIKHA----DGKVEEIKLNHSMNEQQITWFQAELPTRIPAWLD 893
I V KDL GK + IK + D ++E + + N F+ + R A +
Sbjct: 459 ILNVTAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEA--E 516
Query: 894 SSLSIYEQGVKEFDTL 909
S + E+ +KE +
Sbjct: 517 SLIYSLEKALKEIVKV 532
>gnl|CDD|224593 COG1679, COG1679, Predicted aconitase [General function prediction
only].
Length = 403
Score = 32.0 bits (73), Expect = 2.1
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 499 CTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVL 558
C +AS E++ R A + K + P VT S + A ++G L E G V+
Sbjct: 297 CPHASLEELRRLAELLKGR---KRPAGVPLYVTT-SRAVYAQARKEGYLAKLEELGVKVV 352
Query: 559 ANAC 562
++ C
Sbjct: 353 SDTC 356
>gnl|CDD|226921 COG4548, NorD, Nitric oxide reductase activation protein [Inorganic
ion transport and metabolism].
Length = 637
Score = 31.3 bits (71), Expect = 3.2
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 770 PWVAVG-----DENYGEGSSREHAALEPRHLG--GRAIIVKSFARIHETNLKKQGLLPLT 822
PWV + DE+ GE ALEP + G AI S A++ E +++ L+ L+
Sbjct: 502 PWVRINTVKDFDESMGETVGPRIMALEPGYYTRDGAAIRHAS-AKLMERPQRQKLLIVLS 560
Query: 823 FANPSDYDKIQPNDRI 838
P+D+D + I
Sbjct: 561 DGKPNDFDHYEGRFGI 576
>gnl|CDD|226999 COG4652, COG4652, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 657
Score = 30.8 bits (70), Expect = 4.3
Identities = 12/67 (17%), Positives = 18/67 (26%), Gaps = 9/67 (13%)
Query: 402 AEIGATTSVFPYNNRMYDFLKATLREDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEP 461
T+V P N + F T E K + S L+ D+
Sbjct: 66 QSFIKRTTVEPNKNGHFVFNYMTYGEGFLKTNYQLLSK---------SSLLTRDILGSYL 116
Query: 462 HVNGPFT 468
+G
Sbjct: 117 IKSGHTD 123
>gnl|CDD|225668 COG3126, COG3126, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 158
Score = 29.8 bits (67), Expect = 4.7
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 780 GEGSSREHAALEPRHLGGRAIIVKSFA-----RIHETNLKKQGLLPLTFANPSDYDKIQP 834
G RE AL P + + S A + E ++ +G +P F P D IQP
Sbjct: 47 GTVLYRERIALPPGAVLTVTLSDVSLADAPSRVLAEQTVRTEGQVPFPFVLPFDPSDIQP 106
Query: 835 NDRISL 840
N R +L
Sbjct: 107 NHRYAL 112
>gnl|CDD|225673 COG3131, MdoG, Periplasmic glucans biosynthesis protein [Inorganic
ion transport and metabolism].
Length = 534
Score = 30.1 bits (68), Expect = 7.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 842 GLKDLAPGKPVTAQIKHADGKVEEIKL 868
LK L P PV I ++G++ E+ +
Sbjct: 454 DLKKLPPDAPVEPVITSSNGEIVEVSI 480
>gnl|CDD|226046 COG3515, COG3515, Predicted component of the type VI protein
secretion system [Intracellular trafficking, secretion,
and vesicular transport].
Length = 346
Score = 29.7 bits (67), Expect = 7.8
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 2/96 (2%)
Query: 71 VKPKSLVEKARLNVATEKSL-YLSSLNKEEQYASWMAACRLASKGRTLADSSYEAEQTGP 129
++ K E A L A +++ L + + A+ + A R A S P
Sbjct: 166 LELKLSAELAALLAALQQTAARLETQAARDIKAAALTALR-AGLLAAEQVLSRLPGDAAP 224
Query: 130 HSRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPST 165
R R+ + A ++ S P +A +
Sbjct: 225 RDRFLRQRLLLAQLPAAAGLIALASEPQPALAEQAP 260
>gnl|CDD|212501 cd11642, SUMT, Uroporphyrin-III C-methyltransferase
(S-Adenosyl-L-methionine:uroporphyrinogen III
methyltransferase, SUMT). SUMT, an enzyme of the
cobalamin and siroheme biosynthetic pathway, catalyzes
the transformation of uroporphyrinogen III into
precorrin-2. It transfers two methyl groups from
S-adenosyl-L-methionine to the C-2 and C-7 atoms of
uroporphyrinogen III to yield precorrin-2 via the
intermediate formation of precorrin-1. SUMT is the first
enzyme committed to the biosynthesis of siroheme or
cobalamin (vitamin B12), and precorrin-2 is a common
intermediate in the biosynthesis of corrinoids such as
vitamin B12, siroheme and coenzyme F430. In some
organisms, the SUMT domain is fused to the precorrin-2
oxidase/ferrochelatase domain to form siroheme synthase
or to uroporphyrinogen-III synthase to form bifunctional
uroporphyrinogen-III methylase/uroporphyrinogen-III
synthase.
Length = 233
Score = 29.3 bits (67), Expect = 8.4
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 507 MSRCASIAKEAMAHGLKSSTPFNV-----TPGSEQIRATIERDGIAQTLREFG 554
+ IA E +A G TP + TP + T+ +A+ E G
Sbjct: 169 VKNLPEIAAELIAAGRPPDTPVAIIENATTPDQRVVVGTLAD--LAELAAEAG 219
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.397
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 55,033,763
Number of extensions: 5466973
Number of successful extensions: 4631
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4450
Number of HSP's successfully gapped: 146
Length of query: 1087
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 980
Effective length of database: 6,191,724
Effective search space: 6067889520
Effective search space used: 6067889520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (28.4 bits)