RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3833
(1087 letters)
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle,
iron-sulfur, mitochondrion, transit peptide, 4Fe-4S,
3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1
c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A*
5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A*
1nis_A* 1nit_A
Length = 753
Score = 1171 bits (3031), Expect = 0.0
Identities = 507/751 (67%), Positives = 576/751 (76%), Gaps = 72/751 (9%)
Query: 132 RLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGVEDLKRAKSQNEE 191
RLRPDRVAMQDATAQMAMLQFISSGLP+VAVPSTIHCDHLIEAQ+GG +DL+RAK N+E
Sbjct: 62 RLRPDRVAMQDATAQMAMLQFISSGLPKVAVPSTIHCDHLIEAQLGGEKDLRRAKDINQE 121
Query: 192 VYAFLRSAGAKYGVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHTPNGGGLGGLCIGVG 251
VY FL +AGAKYGVGFW PGSGIIHQIILENYA+PG+L+IGTDSHTPNGGGLGG+CIGVG
Sbjct: 122 VYNFLATAGAKYGVGFWRPGSGIIHQIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVG 181
Query: 252 GADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYHG 311
GADAVDVMA IPWELKCPKVIGV+LTG L GWTS KDVILKVAGILTVKGGTGAI+E
Sbjct: 182 GADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVE--- 238
Query: 312 PGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEI 371
YHGPG+D+ISCTGM TICNMGAEI
Sbjct: 239 ------------------------------------YHGPGVDSISCTGMATICNMGAEI 262
Query: 372 GATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIAK 431
GATTSVFPYN R M +L T R DIA
Sbjct: 263 GATTSVFPYNHR---------------------------------MKKYLSKTGRADIAN 289
Query: 432 EAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAAKKNGWPMDI 491
A +++ L PD G YDQ+IE++L+ L+PH+NGPFTPDLAHP+ ++G A+K GWP+DI
Sbjct: 290 LADEFKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEVGSVAEKEGWPLDI 349
Query: 492 KVSLIGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLR 551
+V LIGSCTN+SYEDM R A++AK+A+AHGLK + F +TPGSEQIRATIERDG AQ LR
Sbjct: 350 RVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLR 409
Query: 552 EFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVT 611
+ GG VLANACGPCIGQW+RKD+K GEKNTIV SYNRNFTGRNDANP THAFVTSPE+VT
Sbjct: 410 DVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVT 469
Query: 612 ALAIKGTLAFDPRSDTLTGSDGKPFKLRDPFGDELPTKGFDPGVDTYQPPPKDGSSLSVD 671
ALAI GTL F+P +D LTG DGK FKL P DELP FDPG DTYQ PPKD S V
Sbjct: 470 ALAIAGTLKFNPETDFLTGKDGKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVA 529
Query: 672 VDPKSQRLQLLEPFDVWDKKDIKDMVVLIKVKGKCTTDHISAAGPWLKFRGHLDNISNNL 731
V P SQRLQLLEPFD WD KD++D+ +LIKVKGKCTTDHISAAGPWLKFRGHLDNISNNL
Sbjct: 530 VSPTSQRLQLLEPFDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNL 589
Query: 732 FLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGDENYGEGSSREHAALE 791
+ A N EN + N V+N +T ++GPV + AR YK G+ WV +GDENYGEG+SREH+ALE
Sbjct: 590 LIGAINIENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGASREHSALE 649
Query: 792 PRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRISLVGLKDLAPGKP 851
PRHLGGRAII KSFARIHETNLKKQGLLPLTFA+P+DY+KI P D++++ GLKD APGKP
Sbjct: 650 PRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPGKP 709
Query: 852 VTAQIKHADGKVEEIKLNHSMNEQQITWFQA 882
+ IKH +G E I LNH+ NE QI WF+A
Sbjct: 710 LKCIIKHPNGTQETILLNHTFNETQIEWFRA 740
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase
activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1
c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Length = 888
Score = 269 bits (691), Expect = 2e-76
Identities = 219/876 (25%), Positives = 333/876 (38%), Gaps = 232/876 (26%)
Query: 134 RPDRVAMQDATAQMAMLQFIS--------SGLPRVA---VPSTIHCDHLIEAQVGGVED- 181
+P RV +QD T A++ F + G P P+ + DH I+ D
Sbjct: 78 KPARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADS 137
Query: 182 ----LKRAKSQNEEVYAFLR-SAGAKYGVGFWHPGSGIIHQIILE----------NYAFP 226
+N E + FL+ + A + + PGSGIIHQ+ LE Y +P
Sbjct: 138 LQKNQDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYP 197
Query: 227 GLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSS 286
L +GTDSHT GLG L GVGG +A VM P + P+VIG RL G +S
Sbjct: 198 DSL-VGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTS 256
Query: 287 KDVILKVAGILTVKGGTGAIIEYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRIN 346
D++L + L G G +E+ GPG+ +S
Sbjct: 257 TDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIA-------------------------- 290
Query: 347 EYHGPGIDNISCTGMGTICNMGAEIGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGA 406
D TI NM E GAT + FP +D + +I
Sbjct: 291 -------DR------ATIANMCPEYGATAAFFP------VDEV------SI--------- 316
Query: 407 TTSVFPYNNRMYDFLKATLRED--IAK-EA-MKYQSL----LTPDEGAKYDQLIELDLNT 458
+L T R++ + + ++ + P + + Q++ELDL T
Sbjct: 317 ------------TYLVQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVELDLKT 364
Query: 459 LEPHVNGP---------------FTPDLAHPINKLGEAAKKNGWPMDIKVSL-------- 495
+ P +GP F L G
Sbjct: 365 VVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYDNTEFTLA 424
Query: 496 --------IGSCTNASY-EDMSRCASIAKEAMAHGL------KSSTPFNVTPGSEQIRAT 540
I SCTN S M +AK+A+ GL K+S ++PGS +
Sbjct: 425 HGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTS----LSPGSGVVTYY 480
Query: 541 IERDGIAQTLREFGGTVLANACGPCIGQWN--------RKDVKMGE-KNTIVNSYNRNFT 591
++ G+ L + G V+ C CIG N + + G+ V S NRNF
Sbjct: 481 LQESGVMPYLSQLGFDVVGYGCMTCIG--NSGPLPEPVVEAITQGDLVAVGVLSGNRNFE 538
Query: 592 GRNDANPATHA-FVTSPELVTALAIKGTLAFDPRSDTL-TGSDGKPFKLRD--PFGDE-- 645
GR +P T A ++ SP LV A AI GT+ D + L + G+ L+D P DE
Sbjct: 539 GR--VHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQ 596
Query: 646 -LPTKGFDPG--VDTYQPPPKDGS---SLSVDV------DPKSQRLQLLEP--FDVWDK- 690
+ + PG + YQ +L+ + KS ++ P F+
Sbjct: 597 AVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSKSTYIK--SPPFFENLTLD 654
Query: 691 ----KDIKDMVVLIKVKGKCTTDHIS---------AAGPWLK--------F--------- 720
K I D VL+ + TTDHIS A +L F
Sbjct: 655 LQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGN 714
Query: 721 -----RGHLDNIS-NNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAV 774
RG NI N FL N + + + +G+ V + A Y+ AG+P + +
Sbjct: 715 DAVMARGTFANIRLLNRFL------NKQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVL 768
Query: 775 GDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYD--KI 832
+ YG GSSR+ AA P LG +A++ +S+ RIH +NL G++PL + + D +
Sbjct: 769 AGKEYGAGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGL 828
Query: 833 QPNDRISLVGLKDLAPGKPVTAQIKHADGKVEEIKL 868
+R +++ ++L P V ++ GK + +
Sbjct: 829 TGQERYTIIIPENLKPQMKVQVKLD--TGKTFQAVM 862
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric
acid cycle, heat- like domain, lyase; HET: TRA; 2.40A
{Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Length = 865
Score = 255 bits (654), Expect = 8e-72
Identities = 94/499 (18%), Positives = 153/499 (30%), Gaps = 85/499 (17%)
Query: 132 RLRPDRVAMQDATAQMAMLQFISSGLPRVAVP-STIHCDHLIEAQVGGVEDLKRAKSQNE 190
+ V QD T M + + H K +
Sbjct: 405 EPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYP----------KPVDV 454
Query: 191 EVYAFLRSAGAKYGVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHTPNGGGLGGLCIGV 250
+ L G PG G+IH L P + G DSHT G+
Sbjct: 455 NTHHTLPDFIMNRGGVSLRPGDGVIHSW-LNRMLLPDTVGTGGDSHTRFPIGI---SFPA 510
Query: 251 GGADAVDVMADIPWELKCPKVIGVRLTGGLKGWTSSKDVILKVAGILTVKGGTGAIIEYH 310
G A L P+ + VR G ++ + +D++ + +K G + +
Sbjct: 511 GSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPL-YAIKQGLLTVEKKG 569
Query: 311 GPGIDNISCTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAE 370
I ++ RI E G+ ++ + + AE
Sbjct: 570 KKNI--------------------------FSGRILEIE--GLPDLKVEQAFELTDASAE 601
Query: 371 IGATTSVFPYNQRINIDNISCTGMGTICNMGAEIGATTSVFPYNNRMYDFLKATLREDIA 430
A N+ I+ + + D R
Sbjct: 602 RSAAGCTIKLNKEPIIEYL-------------NSNIVLLKWMIAEGYGDRRTLERRIQGM 648
Query: 431 KEAMKYQSLLTPDEGAKYDQLIELDLNTL-EPHVNGPFTPDLAHPINKLGEAAKKNGWPM 489
++ + LL D A+Y +I++DL + EP + P PD A P++ +
Sbjct: 649 EKWLANPELLEADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQ---------- 698
Query: 490 DIKVSL--IGSCTNASYEDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIA 547
K+ IGSC + + AH + T V P + A + +G
Sbjct: 699 GEKIDEVFIGSCMT-NIGHFRAAGKLLD---AHKGQLPTRLWVAPPTRMDAAQLTEEGYY 754
Query: 548 QTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVNSYNRNFTGR--NDANPATHAFVT 605
+ G + C C+G N+ V G T+V++ RNF R AN F+
Sbjct: 755 SVFGKSGARIEIPGCSLCMG--NQARVADGA--TVVSTSTRNFPNRLGTGAN----VFLA 806
Query: 606 SPELVTALAIKGTLAFDPR 624
S EL A+ G L P
Sbjct: 807 SAELAAVAALIGKLP-TPE 824
Score = 47.5 bits (113), Expect = 3e-05
Identities = 38/157 (24%), Positives = 55/157 (35%), Gaps = 28/157 (17%)
Query: 697 VVLIKVKGKCTTDHISAAGP-WLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYG 755
V + KV G+ TD +S A W R +I L A ++ G G
Sbjct: 168 VTVFKVTGETNTDDLSPAPDAW--SR---PDIP----LHALAMLKNAREGIEPDQPGVVG 218
Query: 756 PVNEVARAYKAAGVPWVAVGDENYGEGSSREHAALEPRHLGGRAI------------IVK 803
P+ ++ A + G P VGD G GSSR+ A G I +
Sbjct: 219 PIKQIE-ALQQKGFPLAYVGD-VVGTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGG 276
Query: 804 SFARIHETNLKKQGLLPLTFANPSDYDKIQPNDRISL 840
A I ++ G LP+ D + D I +
Sbjct: 277 KIAPIFFNTMEDAGALPIE----VDVSNLNMGDVIDV 309
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin
activation, cytoplas membrane, cell adhesion; HET: SRT;
1.90A {Homo sapiens} PDB: 2lko_A*
Length = 173
Score = 187 bits (475), Expect = 8e-55
Identities = 70/141 (49%), Positives = 101/141 (71%), Gaps = 1/141 (0%)
Query: 940 TDTSSISLADDDIDAALTDLQVTLEGSHISLASPDIMHVPELYDYLRCLKPKRFTMKAYK 999
++ D++DAAL+DL++TLEG S DI +PEL DY++ KPK+ T+K YK
Sbjct: 8 NHLNNSDKEVDEVDAALSDLEITLEGGKTSTILGDITSIPELADYIKVFKPKKLTLKGYK 67
Query: 1000 RLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMS 1059
+ W T ++ + YKS+E++ +P ++ +LRGCEVTPDVN+S KF IKL +P A+GM+
Sbjct: 68 QYWCTFKDTSISCYKSKEESS-GTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVAEGMN 126
Query: 1060 EMFLRCENEEQYASWMAACRL 1080
E++LRC+NE+QYA WMAACRL
Sbjct: 127 EIWLRCDNEKQYAHWMAACRL 147
Score = 57.8 bits (139), Expect = 9e-10
Identities = 24/39 (61%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 87 EKSLYLSSLNKEEQYASWMAACRLASKGRTLADSSYEAE 125
++L N E+QYA WMAACRLASKG+T+ADSSY E
Sbjct: 125 MNEIWLRCDN-EKQYAHWMAACRLASKGKTMADSSYNLE 162
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 137
Score = 138 bits (350), Expect = 2e-38
Identities = 54/107 (50%), Positives = 78/107 (72%), Gaps = 1/107 (0%)
Query: 974 DIMHVPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGC 1033
+PEL D+LR +P++ T+K Y++ WV +E L +YKS+++A PI + +L+GC
Sbjct: 4 GSSGIPELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGD-PIQQLNLKGC 62
Query: 1034 EVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAACRL 1080
EV PDVN+S KF IKL VP+ +GMSE++LRC++E+QYA WMA CRL
Sbjct: 63 EVVPDVNVSGQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRL 109
Score = 52.3 bits (125), Expect = 4e-08
Identities = 24/43 (55%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 83 NVATEKSLYLSSLNKEEQYASWMAACRLASKGRTLADSSYEAE 125
+ +YL + E+QYA WMA CRLASKGRT+ADSSY +E
Sbjct: 83 SPEGMSEIYLRCQD-EQQYARWMAGCRLASKGRTMADSSYTSE 124
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis,
leucine biosynthesis, structural genomics, NPPSFA; 2.10A
{Methanocaldococcus jannaschii}
Length = 170
Score = 83.1 bits (206), Expect = 1e-18
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 774 VGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQ 833
V EN+G GSSRE A + ++ G +A+I KSFARI N GL+P+ + D+I+
Sbjct: 56 VAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPIIA----NTDEIK 111
Query: 834 PNDRISLVGLKDLAPGK 850
D + + DL +
Sbjct: 112 DGDIVEI----DLDKEE 124
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase;
1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Length = 163
Score = 82.3 bits (204), Expect = 2e-18
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 774 VGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFANPSDYDKIQ 833
V +N+G GSSRE AAL + LG +I +SF RI N G+ L + ++
Sbjct: 56 VAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIGIPLLL----GKTEGLK 111
Query: 834 PNDRISLVGLKDLAPGK 850
D +++ + G+
Sbjct: 112 DGDLVTV----NWETGE 124
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 85.7 bits (211), Expect = 5e-17
Identities = 104/659 (15%), Positives = 204/659 (30%), Gaps = 191/659 (28%)
Query: 505 EDMSRCASIAKEAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGP 564
+DM + + ++KE + H + S + G+ ++ T+ + +++F VL
Sbjct: 39 QDMPK-SILSKEEIDHIIMSKDAVS---GTLRLFWTLLSKQ-EEMVQKFVEEVLRINYKF 93
Query: 565 CIGQWNRKDVKMGEKNTIVNSYNRNFTGRNDANPATHAFVTSPELVTALAIKGTLAFDPR 624
+ + + + T + R+ ND V+ + L + L P
Sbjct: 94 LMSPI-KTEQRQPSMMTRMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKL-RQALLELRPA 150
Query: 625 SDTL----TGSDGK-----------PFKLRDPFG------------DELP---------- 647
+ L GS GK + + F + +
Sbjct: 151 KNVLIDGVLGS-GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 648 TKGFDPGVDTYQPPPKDGSSLSVDVDPKSQRLQLLEPF--------DVWDKKDIKDM--- 696
+ D + + +RL +P+ +V + K
Sbjct: 210 DPNWTSRSDHSSNIKLR----IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 697 -VVLIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYG 755
+L+ + K TD +SAA H+ +++ LT + L +Y
Sbjct: 266 CKILLTTRFKQVTDFLSAAT-----TTHISLDHHSMTLTPDEVK---------SLLLKY- 310
Query: 756 PVNEVARAYKAAGVPWVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHET--NL 813
++ + +P RE PR L +II +S T N
Sbjct: 311 -LDC-----RPQDLP--------------REVLTTNPRRL---SIIAESIRDGLATWDNW 347
Query: 814 KKQGLLPLTFANPSDYDKIQPNDRISLVGLKDLAPGKPVTAQIKHADGKVEEIKLNHSMN 873
K LT S + ++P + + L+ + + I L
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKM--FDRLS--------VFPPSAHIPTILL----- 392
Query: 874 EQQITWFQAELPTRIPAWLDSSL---SIYEQGVKEFDTLRLRFKFYSIY-DLNAKTDAVQ 929
+ WF ++ + + L S+ E+ KE T+ + SIY +L K +
Sbjct: 393 --SLIWF--DVIKSDVMVVVNKLHKYSLVEKQPKES-TISI----PSIYLELKVKLENEY 443
Query: 930 ------VNLQSNVAQPTDTSSISLADDD------IDAALTDLQVTLEGSHISLASPD--I 975
V+ N+ + D+ + D I G H+ +
Sbjct: 444 ALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHI------------GHHLKNIEHPERM 490
Query: 976 MHVPELYDYLRCLKPKRFTMKAYKRLWVTCREL-----QLRFYK---SREDAQHSSPIN- 1026
++ R L+ K ++ W + QL+FYK D ++ +N
Sbjct: 491 TLFRMVFLDFRFLEQK---IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 1027 --EFSLRGCEVTPDVNLSQGKF--IIKLEVPAADGMSEMFLRCENEEQYASWMAACRLQ 1081
+F L E NL K+ ++++ L E+E + A ++Q
Sbjct: 548 ILDF-LPKIE----ENLICSKYTDLLRIA-----------LMAEDEAIFE--EAHKQVQ 588
Score = 54.9 bits (131), Expect = 1e-07
Identities = 65/427 (15%), Positives = 119/427 (27%), Gaps = 143/427 (33%)
Query: 670 VDVDPKSQRLQ-------LLEPF--DVWDKKDIKDMVVLIKVKGKCTTDHISAAGPWLKF 720
+D + + Q + F + D KD++DM I K + DHI +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNF-DCKDVQDMPKSILSKEEI--DHIIMSK----- 58
Query: 721 RGHLDNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARA-YKAAGVPWV--AVGDE 777
D +S L L T E V+ ++ V EV R Y ++ + E
Sbjct: 59 ----DAVSGTLRLFWTLLSKQE-EMVQ-----KF--VEEVLRINY-----KFLMSPIKTE 101
Query: 778 NYG-EGSSREHAALEPRHLGGRAIIVKSF-ARIHETNLKKQGLLPLTFANPSDYDKIQPN 835
+R + R + K +R+ +Q LL +++P
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL-----------ELRPA 150
Query: 836 DRISLVGLKDLAPGKPVTAQIKHADGKVEEIKLNHSMNEQQITWFQAELPTRIPAWLDSS 895
+ + G+ GK A KV Q ++ +I WL
Sbjct: 151 KNVLIDGVL--GSGKTWVALDVCLSYKV-----------------QCKMDFKI-FWL--- 187
Query: 896 LSIYEQGVKEFDTLRLRFKFYSIYDLNAKTDAVQVNLQSNVAQPTDTSSISLADDDIDAA 955
N+ + +
Sbjct: 188 ---------------------------------------NLKNCNS-------PETVLEM 201
Query: 956 LTDLQVTLEGSHISLASPD---IMHVPELYDYLRCLKPKRFTMKAYKR-LWVTCRELQLR 1011
L L ++ + S + + + + LR L K Y+ L V L
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL----LKSKPYENCLLV------LL 251
Query: 1012 FYKSREDAQHSSPINEFSLRGCEV---TPDVNLSQGKFIIKLEVPAADGMSEMFLRCENE 1068
+ Q++ N F+L C++ T ++ + D S E +
Sbjct: 252 ------NVQNAKAWNAFNL-SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 1069 EQYASWM 1075
++
Sbjct: 305 SLLLKYL 311
Score = 38.7 bits (89), Expect = 0.014
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 22/92 (23%)
Query: 400 MGAEIGATTSVFP--YNNRMYDFLKATLRED-IAKEAM-----------KYQSLLTPDEG 445
E ++F + + + FL+ +R D A A Y+ + ++
Sbjct: 482 KNIEHPERMTLFRMVFLD--FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 446 AKYDQLIE--LD-LNTLEPH-VNGPFTPDLAH 473
KY++L+ LD L +E + + +T DL
Sbjct: 540 -KYERLVNAILDFLPKIEENLICSKYT-DLLR 569
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 58.3 bits (141), Expect = 1e-10
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 6/87 (6%)
Query: 991 KRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKL 1050
+K W + R+ L FY+ R ++ SL GCEV PD + + ++
Sbjct: 15 NVLVNSQWKSRWCSVRDNHLHFYQDRNRSK--VAQQPLSLVGCEVVPDPS-PDHLYSFRI 71
Query: 1051 EVPAADGMSEMFLRCENEEQYASWMAA 1077
G L ++ E+ W+
Sbjct: 72 LHK---GEELAKLEAKSSEEMGHWLGL 95
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB:
3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 55.0 bits (132), Expect = 3e-09
Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 12/110 (10%)
Query: 988 LKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVT----------P 1037
L+ + +K+Y + + L +K+ + + P+ +L C VT P
Sbjct: 12 LERRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTEHSRKNSTSSP 71
Query: 1038 DVNLSQGKFIIKLEVPAADGMS-EMFLRCENEEQYASWMAACRLQLTENN 1086
+ S KF++ + + ++ E SW + LT +
Sbjct: 72 NSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLK-ILTSTS 120
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 2e-08
Identities = 105/636 (16%), Positives = 179/636 (28%), Gaps = 220/636 (34%)
Query: 405 GATTSVFPYNNRMYDFLKATLREDIAKEAMKYQSLLTPDEGAKYDQ----LIELDL---- 456
G+ V + F+ + L+E K L P EG D EL
Sbjct: 14 GSLEHVLLVPTASF-FIASQLQEQFNK------ILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 457 ---NTLEPHVNGPFTPDLAHPINKLGEAA--KKNGWPMDIKVSLIGSCTNASYEDMSRCA 511
+ +EP G F L + + E + N DI +L + + +
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEF-ENCYLEGN----DIH-ALAAKLLQENDTTLVKTK 120
Query: 512 SIAK---EAMAHGLKSSTPFNVTPGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQ 568
+ K A + PF+ S RA +G AQ + FG GQ
Sbjct: 121 ELIKNYITARIM---AKRPFDKKSNSALFRAV--GEGNAQLVAIFG------------GQ 163
Query: 569 WNRKDVKMGEKNTIVNSYNRNFTG-RNDANPATHAFVTSPELVTALAIKGTLAFDPRSDT 627
G NT + Y F R + T LV L ++T
Sbjct: 164 --------G--NT--DDY---FEELR-------DLYQTYHVLVGDL-------IKFSAET 194
Query: 628 LTGSDGKPFKLRDPFGDELPTKGFDPG--VDTYQPPPKDGSSLSVDVD-PKSQRLQL--- 681
L+ F T+G + ++ P LS+ + P +QL
Sbjct: 195 LSELIRTTLDAEKVF-----TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY 249
Query: 682 --------LEPFDVWDKKDIKDMVVLIKVKGKCTTDH---------ISAAGPWLKFRGHL 724
P ++ +KG T H I+ W F +
Sbjct: 250 VVTAKLLGFTPGELRS-----------YLKG--ATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 725 DNISNNLFLTATNAENGEMNKVKNQLTGQYGPVNEVARAYKAAGVPWVAVGD-ENYGEGS 783
LF G + AY +P + D EG
Sbjct: 297 RKAITVLFFI------G--------VRCY--------EAYPNTSLPPSILEDSLENNEG- 333
Query: 784 SREHAALEPRH-LGGRAI-IVKSFARIHETNLKKQGLLPLTFANPSDYDKIQ------PN 835
P L + + +++TN LP +++
Sbjct: 334 -------VPSPMLSISNLTQEQVQDYVNKTNSH----LPAG-------KQVEISLVNGAK 375
Query: 836 DRI------SLVGL-----KDLAPGKPVTAQIKHADGKVEEIKLNHSMNEQQITWFQAEL 884
+ + SL GL K AP ++I ++ K+ K ++ F L
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL---KFSNR--------F---L 421
Query: 885 PTRIP---AWLDSSLSIYEQGVK----EFDTLRLRFKFYSIYDLNAKTDAVQVNLQSNVA 937
P P L + + + + F+ ++ Y +D +L+
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD--------GSDLRV--- 470
Query: 938 QPTDTSSISLADDDIDAALT-----DLQVTLEGSHI 968
S S+++ +D + + + +HI
Sbjct: 471 -----LSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Score = 55.4 bits (133), Expect = 1e-07
Identities = 73/457 (15%), Positives = 128/457 (28%), Gaps = 172/457 (37%)
Query: 405 GATTSVFP-----YNNRMYDFLKATLREDIAKEAMKYQSLLTPDEGAK--YDQLIELDLN 457
G T F Y Y L L I A L+ A+ + Q L++
Sbjct: 164 GNTDDYFEELRDLYQ--TYHVLVGDL---IKFSAETLSELIRTTLDAEKVFTQ--GLNIL 216
Query: 458 T-LEPHVNGPFTPDLAH-----PINKLGEAA------KKNGW-PMDIKVSLIG------- 497
LE N P L P+ + + A K G+ P +++ L G
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 498 ---------SCTNASYEDMS------------RC----------ASIAKEAMAHGLKSST 526
+ + S+ RC SI ++++ + +
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 527 P-FNVT-PGSEQIRATIERDGIAQTLREFGGTVLANACGPCIGQWNRKDVKMGEKNTIVN 584
P +++ EQ++ + + N+ P K V++ +VN
Sbjct: 337 PMLSISNLTQEQVQDYVNK---------------TNSHLP-----AGKQVEIS----LVN 372
Query: 585 SYNRNF--TGRNDANPAT-HAFVTSPELVTALA-------------IKGTLAFDP----- 623
+N +G P + + + A + +K + F P
Sbjct: 373 GA-KNLVVSG----PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 624 RSDTLTGSDGKPFKLRDPFGDELPTKGFD---PGVDTYQPPPKDGS---SLSVDVDPKSQ 677
S L + +D + + D P DT+ DGS LS + +
Sbjct: 428 HSHLLVPA--SDLINKDLVKNNVSFNAKDIQIPVYDTF-----DGSDLRVLSGSISERIV 480
Query: 678 RLQLLEPFDVWDKKDIKDMVVLIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLFLTATN 737
+ P W+ + HI GP G + LT N
Sbjct: 481 DCIIRLPVK-WETTT------------QFKATHILDFGP-----GGASGLGV---LTHRN 519
Query: 738 AENGEMNKVKNQLTG---------QYGPVNEVARAYK 765
+ G TG P ++ +K
Sbjct: 520 KD-G---------TGVRVIVAGTLDINPDDDY--GFK 544
Score = 52.4 bits (125), Expect = 9e-07
Identities = 59/329 (17%), Positives = 92/329 (27%), Gaps = 94/329 (28%)
Query: 5 ASTPISSPLNNNNGTWHKKSYSEMNGSYSPVSWNGNVSTLEMLNGSLDSSLACSPSSPCK 64
S PIS PL H +++ G ++P + + L +++A + + +
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLG-FTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 65 E----------------ARAKLVKPKSLVEKARLNVATEKSLYLSSLNKEEQYASWMAAC 108
R P N + S+ SL E S M +
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYP---------NTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 109 R------LASKGRTLADSSYEAEQ--------------TGPHSRLRPDRVAMQDATAQMA 148
+ +Q +GP L + ++ A A
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG 401
Query: 149 MLQ-----------FISSGLPRVAVPSTIHCDHLIEAQVGGVEDLKR------AKSQNEE 191
+ Q F + LP VA P H L+ A +DL + AK
Sbjct: 402 LDQSRIPFSERKLKFSNRFLP-VASP--FHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 192 VYAF-----LRSAGAKYGVGFWHPGSGIIHQIILENYAFPGLLMIGTDSHT----PNGG- 241
VY LR I+ II + +H P GG
Sbjct: 459 VYDTFDGSDLRVLSGSI-------SERIVDCIIRLPVKWETTTQFKA-THILDFGP-GGA 509
Query: 242 -GLG--------GLCIGVGGADAVDVMAD 261
GLG G + V A +D+ D
Sbjct: 510 SGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Score = 51.6 bits (123), Expect = 2e-06
Identities = 82/548 (14%), Positives = 155/548 (28%), Gaps = 183/548 (33%)
Query: 638 LRDPFGDELPTKGFDPGVDTYQPPPKDGSSLSVDVDPKSQRLQLLEPF-----DVWDKKD 692
L++ F LP P +G + D +P + +L+ F + +
Sbjct: 33 LQEQFNKILPE-------------PTEG--FAADDEPTTP-AELVGKFLGYVSSLVEPSK 76
Query: 693 IKDMVVLIKVKGKCTTDHISAAGPWLKF-RGHLDNISNNL-FLTATNAENGEMNKVKNQL 750
+ ++ + F +L+ N++ L A + + VK +
Sbjct: 77 VGQFDQVLNL----CLTE---------FENCYLEG--NDIHALAAKLLQENDTTLVKTK- 120
Query: 751 TGQYGPVNEVARAYKAAGVPWVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSF----- 805
E+ + Y A + + + ++AL G A +V F
Sbjct: 121 --------ELIKNYITA----RIMAKRPF---DKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 806 --------ARIHET---------NLKKQGLLPLTFANPSDYDKIQPN--DRISLVGLKDL 846
+++T + L L D +K+ + + +
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI-RTTLDAEKVFTQGLNILEWLENPSN 224
Query: 847 APGK------PVT------AQIKH--ADGKVEEIKLNHS-MNE--QQITWFQAELPT-RI 888
P K P++ Q+ H K+ + + + T L T
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTAKL--LGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 889 PAWLDSSLSIYEQGVKEFDTLRLRF-------KFYSIYDLNAKTDAVQVNLQSNVAQPTD 941
A DS S + K + + F + Y L ++ +L++N P+
Sbjct: 283 IAETDSWESFFVSVRK---AITVLFFIGVRCYEAYPNTSLPPS--ILEDSLENNEGVPSP 337
Query: 942 TSSIS-LADDDIDAALTDLQVTL-EGSHISLA---SPDIMHV----PE-LYDYLRCLKPK 991
SIS L + + + L G + ++ V P+ LY
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK-NLVVSGPPQSLY--------- 387
Query: 992 RFTMKAYKRLWVTCRELQLRFYKSREDA-QHSSPINE----FSLRGCEVT-P-------- 1037
L L LR K+ Q P +E FS R V P
Sbjct: 388 --------GL-----NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP 434
Query: 1038 -----DVNLSQGKFIIK---LEVP---AADGMSEMFLRCENEEQYAS-----------WM 1075
+ +L + +++P DG LR + W
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD---LRVLSGSISERIVDCIIRLPVKWE 491
Query: 1076 AACRLQLT 1083
+ + T
Sbjct: 492 TTTQFKAT 499
Score = 50.0 bits (119), Expect = 5e-06
Identities = 61/391 (15%), Positives = 106/391 (27%), Gaps = 147/391 (37%)
Query: 783 SSR----EHAALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLTFAN--PSDYDKI---- 832
S+R H +LE ++V + + + L++Q F P +
Sbjct: 5 STRPLTLSHGSLEH------VLLVPTASFFIASQLQEQ------FNKILPEPTEGFAADD 52
Query: 833 QPNDRISLVG--LKDLAPGKPVTAQIKHADGKVEEIKLN------------HSM------ 872
+P LVG L ++ V +V + L H++
Sbjct: 53 EPTTPAELVGKFLGYVS--SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 873 -------NEQQI--TWFQAELPTRIP--AWLDSSL---------SIYE----QGVKE--F 906
+++ + A + + P +S+L + QG + F
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 907 DTLRLRFKFYS--IYDLNAKTDAVQVNLQSNVAQPTDTSSISLADDDIDAALTDLQVTLE 964
+ LR ++ Y + DL L + D + +I L + T
Sbjct: 171 EELRDLYQTYHVLVGDL---IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT-- 225
Query: 965 GSHISLASPDIMHVPELYDYLRCLKPKRF------TMKAYKRLWVTCRELQLRFYKSRED 1018
PD DYL P + Y VT + L + R
Sbjct: 226 --------PDK-------DYL-LSIPISCPLIGVIQLAHYV---VTAKLLGFTPGELRSY 266
Query: 1019 AQ----HSSPI------------NEFS--------------LRGCEVTPDVNLSQGKFII 1048
+ HS + F +R E P+ +L
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP------ 320
Query: 1049 KLEVPAADGMSEMFLRCENEEQYASWMAACR 1079
P+ S EN E S M +
Sbjct: 321 ----PSILEDSL-----ENNEGVPSPMLSIS 342
Score = 48.9 bits (116), Expect = 1e-05
Identities = 63/414 (15%), Positives = 108/414 (26%), Gaps = 150/414 (36%)
Query: 20 WHKKSYSEMNGSY---SPVSWNGNVSTLEMLNGSLDSSLAC----------SPSSPCKEA 66
W + + + Y P+S LA +P
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVI----------QLAHYVVTAKLLGFTPGELRSYL 267
Query: 67 RAKLVKPKSLVEKARLNVATEKSLYLSSLNKEEQYASWMAACRLASKG-RTLADSSYEAE 125
+ + LV A +A S W + K L
Sbjct: 268 KGATGHSQGLV-TAVA-IAETDS--------------WESFFVSVRKAITVLFFIGVRCY 311
Query: 126 QTGPHSRLRPDRVAMQDATAQMA-----MLQFIS-SGLPRVAVPSTI--HCDHLIEAQ-- 175
+ P++ L P ++D+ ML S S L + V + HL +
Sbjct: 312 EAYPNTSLPPS--ILEDSLENNEGVPSPML---SISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 176 ------------VGG-VEDLKRAKSQNEEVYAFLRSAGAKYGVGFWH-PGSG----IIHQ 217
V G + L LR A A G+ P S ++
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLT-------LRKAKAPSGLDQSRIPFSERKLKFSNR 419
Query: 218 IILENYAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVD-VMAD-----IPW---ELKC 268
F L + + H+ L L A D + D + + +++
Sbjct: 420 -------F---LPVASPFHSH----L--L------VPASDLINKDLVKNNVSFNAKDIQI 457
Query: 269 PKVIGVRLTGGLKGWTSSKDVILK--VAGILT--------VKGGTGAIIEYHGPGIDNIS 318
P V T I + V I+ + I+++ GPG
Sbjct: 458 P----VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF-GPG----G 508
Query: 319 CTGMGTICNMGAEIGATTSVFPYNKRINEYHGPGIDNISCTGMGTICNMGAEIG 372
+G+G + + R + G G+ I + N + G
Sbjct: 509 ASGLGVLTH----------------RNKD--GTGVRVIVAGTLDI--NPDDDYG 542
Score = 39.3 bits (91), Expect = 0.008
Identities = 60/287 (20%), Positives = 99/287 (34%), Gaps = 106/287 (36%)
Query: 676 SQR----LQLLEPF----DVWDKKD----------IKDMV----VLIKV-----KGKCTT 708
SQ + L + DVW++ D I D+V V + + KGK
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 709 DHISAAGPWLKFRGHLDN--ISNNLFLTAT--------NAENGEMNKVKNQLTGQYGP-- 756
++ SA + F +D + +F +E G ++ + Q P
Sbjct: 1686 ENYSA----MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT---Q--PAL 1736
Query: 757 -VNEVA--RAYKAAG-VPWVAV------GDENYG-----------E---------GSSRE 786
+ E A K+ G +P A G E Y E G + +
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLG-E-YAALASLADVMSIESLVEVVFYRGMTMQ 1794
Query: 787 HAALEPRHLGGR------AI----IVKSFAR-----IHETNLKKQGLLPLTFANPSDYDK 831
A PR GR AI + SF++ + E K+ G L + N Y+
Sbjct: 1795 VAV--PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL-VEIVN---YNV 1848
Query: 832 IQPNDRISLVG-LKDLAPGKPVTAQIKHADGKVEEIKLNHSMNEQQI 877
N + G L+ L V IK K++ I+L S++ +++
Sbjct: 1849 --ENQQYVAAGDLRALDTVTNVLNFIKL--QKIDIIELQKSLSLEEV 1891
Score = 33.5 bits (76), Expect = 0.51
Identities = 48/310 (15%), Positives = 82/310 (26%), Gaps = 113/310 (36%)
Query: 30 GS---------Y--SPVS---WN-GNVSTLEMLNGSLDSSLACSPSSPCKEARAKLVK-- 72
GS Y S + WN + + S+ +V
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSI----------------LDIVINN 1668
Query: 73 PKSLV-----EKARLNVATEKSLYLSSLNKEEQYASWMAACRLASKGRTLADSSYEAEQT 127
P +L EK + + Y + + E K +SY
Sbjct: 1669 PVNLTIHFGGEKGK----RIRENYSAMI--FETIVDGKLKTEKIFKEINEHSTSYTFR-- 1720
Query: 128 GPHSRLR------PDRVAMQDATAQMAMLQFI-SSGL-PRVAVPSTIHCDH-LIE----A 174
L P A+ + A + + S GL P A H L E A
Sbjct: 1721 SEKGLLSATQFTQP---AL--TLMEKAAFEDLKSKGLIPADAT----FAGHSLGEYAALA 1771
Query: 175 QVGGV---EDL-----KRAKSQNEEVYAFLRSAGAKYGVGFWHPGS-----------GII 215
+ V E L R + V + YG+ +PG ++
Sbjct: 1772 SLADVMSIESLVEVVFYRGMTMQVAV-PRDELGRSNYGMIAINPGRVAASFSQEALQYVV 1830
Query: 216 HQI------ILE--NYAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADIPWELK 267
++ ++E NY + G A+D + ++ +K
Sbjct: 1831 ERVGKRTGWLVEIVNYNVENQQYV----------------AA-GDLRALDTVTNVLNFIK 1873
Query: 268 CPKVIGVRLT 277
K+ + L
Sbjct: 1874 LQKIDIIELQ 1883
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 51.9 bits (124), Expect = 5e-08
Identities = 8/92 (8%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 991 KRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINE-----FSLRGCEVTPDVNLSQGK 1045
K+ + +++ ++++ + ++ FYK ++ + + + + L+ + + ++ K
Sbjct: 25 KKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDYTKKK 84
Query: 1046 FIIKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
++++++ + L+ ++ + + W+ +
Sbjct: 85 HVLRVKLA---NGALFLLQAHDDTEMSQWVTS 113
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 113
Score = 50.8 bits (122), Expect = 7e-08
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 991 KRF-TMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGK-FII 1048
K+ +K +WV E + FYK + D +SP L+G +T + F+
Sbjct: 13 KKGSVFNTWKPMWVVLLEDGIEFYKKKSD---NSPKGMIPLKGSTLTSPCQDFGKRMFVF 69
Query: 1049 KLEVPAADGMSEMFLRCENEEQYASWMAA 1077
K+ + F + E+ +W+
Sbjct: 70 KITTT---KQQDHFFQAAFLEERDAWVRD 95
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 49.7 bits (119), Expect = 1e-07
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
Query: 991 KRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKL 1050
+ + K +K LW + L Y + ED + L G VT + + + +L
Sbjct: 17 SKGSKKPWKHLWFVIKNKVLYTYAASEDVA---ALESQPLLGFTVTLVKDENSESKVFQL 73
Query: 1051 EVPAADGMSEMFLRCENEEQYASWMAA 1077
GM + ++ W+ A
Sbjct: 74 LHK---GMVFYVFKADDAHSTQRWIDA 97
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis,
isopropylmalate isomerase, LEUD, amino-acid
biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB:
3h5h_A 3h5e_A
Length = 171
Score = 50.6 bits (122), Expect = 2e-07
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 774 VGDENYGEGSSREHA--ALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLT 822
V ++G GSSREHA AL G R +I F I N K GLL
Sbjct: 69 VAGPDFGTGSSREHAVWAL--MDYGFRVVISSRFGDIFRGNAGKAGLLAAE 117
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 49.6 bits (118), Expect = 3e-07
Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 991 KRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINE---FSLRGCEVTPDVNLSQGKFI 1047
K+ ++++ ++ R L FYK + A P + SL + + + + K +
Sbjct: 25 KKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHV 84
Query: 1048 IKLEVPAADGMSEMFLRCENEEQYASWMAACR 1079
KL + E + ++E + +SW+
Sbjct: 85 FKLGLQ---DGKEYLFQAKDEAEMSSWLRVVN 113
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 49.0 bits (117), Expect = 4e-07
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 987 CLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTP--DVNLSQG 1044
K MK +K+ W +L L +Y+ ++ + L ++ +
Sbjct: 27 LYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEG---ILGSILLPSFQIALLTSEDHINR 83
Query: 1045 KFIIKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
K+ K P M + + ++ WM A
Sbjct: 84 KYAFKAAHP---NMRTYYFCTDTGKEMELWMKA 113
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 49.0 bits (117), Expect = 5e-07
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 984 YLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQ 1043
+L K +K + + W + L +YK ++ I S R V P +
Sbjct: 27 WL--FKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPS-DNIS 83
Query: 1044 GKFIIKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
K K E G+ F E+ E+ +W+ A
Sbjct: 84 RKHTFKAEHA---GVRTYFFSAESPEEQEAWIQA 114
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 48.6 bits (116), Expect = 6e-07
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 10/96 (10%)
Query: 984 YLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLS- 1042
+L K ++ +KR W L +YK + + L + PD +
Sbjct: 16 WLH--KQDSSGLRLWKRRWFVLSGHCLFYYKDSREES---VLGSVLLPSYNIRPDGPGAP 70
Query: 1043 -QGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
+F E P GM L + E W+ A
Sbjct: 71 RGRRFTFTAEHP---GMRTYVLAADTLEDLRGWLRA 103
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 48.0 bits (114), Expect = 6e-07
Identities = 15/94 (15%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 989 KPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINE---FSLRGCEVTPDVNLSQGK 1045
K+ + +++ ++ ++ FYK + A P + SL+ ++ + K
Sbjct: 14 HNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKK 73
Query: 1046 FIIKLEVPAADGMSEMFLRCENEEQYASWMAACR 1079
+ KL + +E + +++E+ +W+ A
Sbjct: 74 HVFKLRLS---DGNEYLFQAKDDEEMNTWIQAIS 104
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium, SGC,
hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 48.3 bits (115), Expect = 7e-07
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 13/97 (13%)
Query: 991 KRFTMKAYKRLWVTCRELQLRFYKSREDA---------QHSSPINEFSLRGCEVT-PDVN 1040
KR K + W L F+K + + + S+P LRG ++ +
Sbjct: 24 KRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAPKD 83
Query: 1041 LSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
S K +++L DG SE ++ ++E ++W A
Sbjct: 84 KSSRKNVLELRSR--DG-SEYLIQHDSEAIISTWHKA 117
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 47.8 bits (114), Expect = 9e-07
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 987 CLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKF 1046
K +K + + W + L +YK ++ I S R V P + K
Sbjct: 17 LFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPS-DNISRKH 75
Query: 1047 IIKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
K E G+ F E+ E+ +W+ A
Sbjct: 76 TFKAEHA---GVRTYFFSAESPEEQEAWIQA 103
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase;
2.10A {Streptococcus mutans}
Length = 213
Score = 49.9 bits (120), Expect = 1e-06
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 774 VGDENYGEGSSREHA--ALEPRHLGGRAIIVKSFARIHETNLKKQGLLPLT 822
+ +N+G GSSREHA AL G + I+ SF IH N G+LP+
Sbjct: 90 ITGDNFGAGSSREHAAWAL--ADYGFKVIVAGSFGDIHYNNDLNNGILPII 138
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 47.4 bits (113), Expect = 1e-06
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 9/92 (9%)
Query: 989 KPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNL---SQGK 1045
K F +++ W +Y + + Q P F ++G V +L S+ +
Sbjct: 14 KDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQ---PKGTFLIKGYSVRMAPHLRRDSKKE 70
Query: 1046 FIIKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
+L + + W+
Sbjct: 71 SCFELTSQ---DRRTYEFTATSPAEARDWVDQ 99
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap protein,
hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1
PDB: 2dhj_A
Length = 168
Score = 48.6 bits (115), Expect = 1e-06
Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 989 KPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHS-SPINEFSLRGCEVTPDVNLSQGKFI 1047
K +++ +K+++V R L YK + + S+ C + + ++ K +
Sbjct: 20 KRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLIDISYSETKRKNV 79
Query: 1048 IKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
+L E + E+ + +W+
Sbjct: 80 FRLTTSDC----ECLFQAEDRDDMLAWIKT 105
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP,
complex, virulence, cytoplasm, membrane, polymorphism,
signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Length = 112
Score = 47.1 bits (112), Expect = 2e-06
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 8/91 (8%)
Query: 989 KPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVT--PDVNLSQGKF 1046
+ +K +V L Y R D P+ ++ G + N +
Sbjct: 11 GTSYLGKEHWKTCFVVLSNGILYQYPDRTDVI---PLLSVNMGGEQCGGCRRANTTDRPH 67
Query: 1047 IIKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
++ + + L E+E + A WM
Sbjct: 68 AFQVILS---DRPCLELSAESEAEMAEWMQH 95
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 47.6 bits (113), Expect = 2e-06
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 11/95 (11%)
Query: 991 KRFTMKAYKRLWVTCRELQLRFYKSREDA--------QHSSPINEFSLRGCEVTPDVNLS 1042
R K + WV L FY+ S P + LRG + +LS
Sbjct: 27 GRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHLS 86
Query: 1043 QGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
+ ++ + G E L+ ++E + +W A
Sbjct: 87 SRRNVLHIRTI--PG-HEFLLQSDHETELRAWHRA 118
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics,
center for structural genomics of infec diseases, csgid,
isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Length = 203
Score = 47.9 bits (115), Expect = 3e-06
Identities = 26/49 (53%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 774 VGDENYGEGSSREHA--ALEPRHLGGRAIIVKSFARIHETNLKKQGLLP 820
V EN+G GSSREHA AL G RAII SFA I + N GLL
Sbjct: 77 VSFENFGSGSSREHAPWAL--VDYGIRAIIAPSFADIFKNNALGNGLLT 123
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain,
signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1
PDB: 2otx_A
Length = 211
Score = 47.4 bits (112), Expect = 6e-06
Identities = 21/149 (14%), Positives = 44/149 (29%), Gaps = 15/149 (10%)
Query: 933 QSNVAQPTDTSSISLADDDIDAALTDLQVTLEGSHISLASPDIMHVPELYDYLRCLKPKR 992
A P DT S++ + D +G+ + + YL +
Sbjct: 65 DDPFAGPADTISLA-----SERYDKDDDGPSDGNQFPPIAAQDLPFVIKAGYLEKRRKDH 119
Query: 993 -FTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEV---TPDVNLSQGKFII 1048
F +++ W + +Y S +D Q EF++ G +V +
Sbjct: 120 SFLGFEWQKRWCALSKTVFYYYGSDKDKQ---QKGEFAIDGYDVRMNNTLRKDGKKDCCF 176
Query: 1049 KLEVPAADGMSEMFLRCENEEQYASWMAA 1077
++ P + + W+
Sbjct: 177 EICAP---DKRIYQFTAASPKDAEEWVQQ 202
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 45.8 bits (108), Expect = 8e-06
Identities = 14/114 (12%), Positives = 34/114 (29%), Gaps = 21/114 (18%)
Query: 984 YLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEV-------- 1035
+L + A+ R W + ++ +D + +PI +L C
Sbjct: 10 FLTIFEDVS-GFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIEPANR 68
Query: 1036 ------------TPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
T + + + +++ +L + +E+ WM
Sbjct: 69 EFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQK 122
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Length = 263
Score = 47.3 bits (111), Expect = 1e-05
Identities = 12/94 (12%), Positives = 27/94 (28%), Gaps = 6/94 (6%)
Query: 989 KPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINE---FSLRGCEVTPDVNLSQGK 1045
K + + +K+ WVT + L FY++ V + +
Sbjct: 30 KLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAEDSIVQSVPEHPKKE 89
Query: 1046 FIIKLEVPAADGMSEMFLRCENEEQYASWMAACR 1079
+ L + ++ +W+ A
Sbjct: 90 HVFCLSNS---CGDVYLFQATSQTDLENWVTAIH 120
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 44.6 bits (105), Expect = 1e-05
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 9/93 (9%)
Query: 991 KRFTMKAYKRLWVTCRELQLRFYKSRE------DAQHSSPINEFSLRGCEVTPDVNLSQG 1044
++ + ++ R WV L +Y ++ S+P + S+ G V +
Sbjct: 17 RKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLPDDPEH- 75
Query: 1045 KFIIKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
I +L P D + + + W
Sbjct: 76 PDIFQLNNP--DKGNVYKFQTGSRFHAILWHKH 106
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 46.1 bits (108), Expect = 3e-05
Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 6/94 (6%)
Query: 989 KPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPI---NEFSLRGCEVTPDVNLSQGK 1045
K + T + +K WV+ + L FY++ + + + V +
Sbjct: 30 KVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVPEHPKKD 89
Query: 1046 FIIKLEVPAADGMSEMFLRCENEEQYASWMAACR 1079
F+ L + ++ + +W+ A
Sbjct: 90 FVFCLSNS---LGDAFLFQTTSQTELENWITAIH 120
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 42.9 bits (101), Expect = 5e-05
Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 13/104 (12%)
Query: 974 DIMHVPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGC 1033
+ E YL LK K ++R + + L + + + + +N L C
Sbjct: 5 SSGYGSEKKGYL--LKKSDGIRKVWQRRKCSVKNGILTISHATSN-RQPAKLN---LLTC 58
Query: 1034 EVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
+V P+ ++ K L + E+E+ Y +W++
Sbjct: 59 QVKPN---AEDKKSFDLISH----NRTYHFQAEDEQDYVAWISV 95
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 43.6 bits (102), Expect = 5e-05
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 991 KRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKL 1050
KR + Y+ W R L FY ++ + ++ L + KF + L
Sbjct: 27 KRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVL 86
Query: 1051 EVPAADGMSEMFLRCENEEQYASWMAA 1077
E+ L+ EN E W
Sbjct: 87 P------KEEVQLKTENTESGEEWRGF 107
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin,
inositol tetrakisphosphate signal transduction protein,
adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP:
b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 42.8 bits (101), Expect = 7e-05
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 7/93 (7%)
Query: 995 MKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPA 1054
+K +K W T +L+++K + + PI L C + L P
Sbjct: 31 VKTWKTRWFTLHRNELKYFKDQMSPE---PIRILDLTECSAVQFDYSQERVNCFCLVFPF 87
Query: 1055 ADGMSEMFLRCENEEQYASWMAACRLQLTENNS 1087
+L + + W+ R +L++
Sbjct: 88 R----TFYLCAKTGVEADEWIKILRWKLSQIRK 116
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 42.4 bits (100), Expect = 8e-05
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 995 MKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVT--PDVNLSQGKFIIKLEV 1052
+K +++ + R QL +YK ED + P L GC + GKF+ ++
Sbjct: 21 VKNWQQRYFVLRAQQLYYYKDEEDTK---PQGCMYLPGCTIKEIATNPEEAGKFVFEIIP 77
Query: 1053 PAADGMSEM----FLRCENEEQYASWMAA 1077
+ D L ++ + W+
Sbjct: 78 ASWDQNRMGQDSYVLMASSQAEMEEWVKF 106
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 112
Score = 42.3 bits (99), Expect = 8e-05
Identities = 12/99 (12%), Positives = 26/99 (26%), Gaps = 16/99 (16%)
Query: 984 YLRCLKPKRFTMKAYKRLWVTCRE---LQLRFYKSREDAQHSSPINEFSLRGCEVTPD-- 1038
LR + + + +W L +D + L C+++
Sbjct: 13 PLRLSESG----ETWSEVWAAIPMSDPQVLHLQGGSQDGR---LPRTIPLPSCKLSVPDP 65
Query: 1039 VNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
+ KL+ +L + E W+
Sbjct: 66 EERLDSGHVWKLQ----WAKQSWYLSASSAELQQQWLET 100
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 43.0 bits (101), Expect = 9e-05
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 9/92 (9%)
Query: 989 KPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEV---TPDVNLSQGK 1045
K F +++ W + +Y S +D Q EF++ G +V +
Sbjct: 28 KDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQ---QKGEFAIDGYDVRMNNTLRKDGKKD 84
Query: 1046 FIIKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
++ P + + W+
Sbjct: 85 CCFEICAP---DKRIYQFTAASPKDAEEWVQQ 113
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 42.0 bits (99), Expect = 1e-04
Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 11/91 (12%)
Query: 989 KPKRFTMKAYKRLWVTCRE--LQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKF 1046
+ ++ +K W E QL + ++ +DA P++ L + +G F
Sbjct: 17 FGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDAN---PLDSIDLSSAVFDCKADAEEGIF 73
Query: 1047 IIKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
IK + L+ ++ W+
Sbjct: 74 EIKT------PSRVITLKAATKQAMLYWLQQ 98
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain,
lipid-binding, membrane, membrane protein; 1.90A {Homo
sapiens} PDB: 2kcj_A
Length = 103
Score = 41.7 bits (98), Expect = 1e-04
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 10/95 (10%)
Query: 995 MKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPA 1054
+ ++ W L +Y S++D + CE+ S ++L +P
Sbjct: 12 LTGWQPRWFVLDNGILSYYDSQDDVCKG-SKGSIKMAVCEIKVH---SADNTRMELIIP- 66
Query: 1055 ADGMSEMFLRCENEEQYASWMAA---CRLQLTENN 1086
G +++ N + W+ A + LT+
Sbjct: 67 --GEQHFYMKAVNAAERQRWLVALGSSKASLTDTR 99
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid
transport; NMR {Homo sapiens}
Length = 94
Score = 39.7 bits (93), Expect = 3e-04
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 995 MKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPA 1054
+ ++ WV + L +YKS ++ ++ L +TP +F I +
Sbjct: 14 IHGWQDRWVVLKNNALSYYKSEDETEY-GCRGSICLSKAVITPHDFDEC-RFDISV---- 67
Query: 1055 ADGMSEMFLRCENEEQYASWMAA 1077
S +LR ++ + W+ A
Sbjct: 68 --NDSVWYLRAQDPDHRQQWIDA 88
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 40.1 bits (94), Expect = 4e-04
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 13/92 (14%)
Query: 995 MKAYKRLWVTCRE--LQLRFYKSREDAQHSSPINEFSLRGCEVT-----PDVNLSQGKFI 1047
K +K RE L +Y P+ LRGC VT + S+ + +
Sbjct: 20 RKNWKVRKFILREDPAYLHYYDPAGAED---PLGAIHLRGCVVTSVESNSNGRKSEEENL 76
Query: 1048 IKLEVPAADGMSEMFLRCENEEQYASWMAACR 1079
++ FL+ ++ W+ A +
Sbjct: 77 FEIITA---DEVHYFLQAATPKERTEWIKAIQ 105
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 39.8 bits (93), Expect = 8e-04
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 13/92 (14%)
Query: 995 MKAYKRLWVTCRE--LQLRFYKSREDAQHSSPINEFSLRGCEVT-----PDVNLSQGKFI 1047
K +K RE L +Y P+ LRGC VT + S+ + +
Sbjct: 31 RKNWKVRKFILREDPAYLHYYDPAGAED---PLGAIHLRGCVVTSVESNSNGRKSEEENL 87
Query: 1048 IKLEVPAADGMSEMFLRCENEEQYASWMAACR 1079
++ FL+ ++ W+ A +
Sbjct: 88 FEIITA---DEVHYFLQAATPKERTEWIKAIQ 116
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related
protein 11, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 39.5 bits (92), Expect = 9e-04
Identities = 10/93 (10%), Positives = 30/93 (32%), Gaps = 9/93 (9%)
Query: 987 CLKPKRFTMKAYKRLWVTCRE--LQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQG 1044
L + ++ + L ++ + E +++ P L G ++P +
Sbjct: 13 YLMKYTNLVTGWQYRFFVLNNEAGLLEYFVN-EQSRNQKPRGTLQLAGAVISPS---DED 68
Query: 1045 KFIIKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
+ + LR + ++ W++
Sbjct: 69 SHTFTVNAA---SGEQYKLRATDAKERQHWVSR 98
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid
degradation, phosphatidylinositol (3, 4)-bisphosphate,
signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Length = 125
Score = 39.4 bits (92), Expect = 0.001
Identities = 15/87 (17%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 995 MKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGC---EVTPDVNLSQGKFIIKLE 1051
MK +KR + E + ++KS + + P+ L+ + ++ + ++
Sbjct: 27 MKNWKRRYFQLDENTIGYFKSELEKE---PLRVIPLKEVHKVQECKQSDIMMRDNLFEIV 83
Query: 1052 VPAADGMSEMF-LRCENEEQYASWMAA 1077
S F ++ ++ E+ SW+ A
Sbjct: 84 TT-----SRTFYVQADSPEEMHSWIKA 105
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat,
cytoplasm, GTP-binding, GTPase activation, metal-binding,
nucleotide-binding; NMR {Homo sapiens}
Length = 128
Score = 39.1 bits (90), Expect = 0.001
Identities = 15/106 (14%), Positives = 27/106 (25%), Gaps = 17/106 (16%)
Query: 989 KPKRFTMKAYKRLWVT-CRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFI 1047
+ K +K+ +VT L ++ S D HS+ E L V
Sbjct: 13 RSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAIS 72
Query: 1048 IKLEVPAADGMSE----------------MFLRCENEEQYASWMAA 1077
+ + E+ +W+ A
Sbjct: 73 AFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQA 118
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH,
RAS-associating, pleckstrin-homology, adapter
phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Length = 256
Score = 40.9 bits (95), Expect = 0.001
Identities = 25/120 (20%), Positives = 39/120 (32%), Gaps = 15/120 (12%)
Query: 978 VPELYDYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEV-T 1036
PE+ +L + + K++K+L+V R L A L + +
Sbjct: 131 SPEIQGFLHVKELGK---KSWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLEDSNIFS 187
Query: 1037 PDVNLSQGK------FIIKLEVPAADGMSEMFLRCENEEQYASWMAACRL-----QLTEN 1085
Q IK + L E+E+ SWM A RL L +N
Sbjct: 188 LIAGRKQYNAPTDHGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLLKYGMLLYQN 247
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol binding,
structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 130
Score = 38.9 bits (90), Expect = 0.001
Identities = 25/118 (21%), Positives = 40/118 (33%), Gaps = 25/118 (21%)
Query: 988 LKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFI 1047
LK R T+K++ +LW + L YK+ ++ + L CE+ + + F
Sbjct: 14 LK-IRGTLKSWTKLWCVLKPGVLLIYKT---QKNGQWVGTVLLNACEIIERPS-KKDGFC 68
Query: 1048 IKLEVPA--------------------ADGMSEMFLRCENEEQYASWMAACRLQLTEN 1085
KL P S + +R +E WM A L L
Sbjct: 69 FKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKSG 126
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 39.6 bits (92), Expect = 0.003
Identities = 12/91 (13%), Positives = 32/91 (35%), Gaps = 13/91 (14%)
Query: 989 KPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFII 1048
+ + +K+ W R+ +L ++++ + + +R + D + I
Sbjct: 70 GSSTLSRRNWKKRWFVLRQSKLMYFENDSEEK---LKGTVEVRSAKEIIDNTNKENGIDI 126
Query: 1049 KLEVPAADGMSE--MFLRCENEEQYASWMAA 1077
M++ L E+ E + W +
Sbjct: 127 I--------MADRTFHLIAESPEDASQWFSV 149
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 37.8 bits (88), Expect = 0.003
Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 11/91 (12%)
Query: 987 CLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKF 1046
K + +++ WV L + +Y + ++ L QG
Sbjct: 14 LDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMY---SKGIIPLSAISTV----RVQGDN 66
Query: 1047 IIKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
++ R E EE+ W++
Sbjct: 67 KFEVVTT----QRTFVFRVEKEEERNDWISI 93
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A*
1u27_A*
Length = 127
Score = 37.3 bits (86), Expect = 0.005
Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 22/103 (21%)
Query: 995 MKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPA 1054
+K +KR W + L +++ D P L + V + +L P+
Sbjct: 18 VKTWKRRWFILTDNCLYYFEYTTD---KEPRGIIPLENLSIRE-VLDPRKPNCFELYNPS 73
Query: 1055 ADGMSEM------------------FLRCENEEQYASWMAACR 1079
G + + E+ WM + +
Sbjct: 74 HKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIK 116
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology
domain, PKB, AKT, phosphoinositide,
serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A*
2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Length = 125
Score = 37.2 bits (86), Expect = 0.005
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Query: 995 MKAYKRLW-VTCRELQLRFYKSRED--AQHSSPINEFSLRGCEVTPDVNLSQGKFIIKLE 1051
+K ++ + + + YK R Q +P+N FS+ C++ FII+
Sbjct: 21 IKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIR-- 78
Query: 1052 VPAADGMSEMFLRCENEEQYASWMAACR 1079
+ E E E+ W A +
Sbjct: 79 CLQWTTVIERTFHVETPEEREEWTTAIQ 106
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 37.8 bits (87), Expect = 0.007
Identities = 13/104 (12%), Positives = 34/104 (32%), Gaps = 4/104 (3%)
Query: 986 RCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLSQGK 1045
R + K+ + YK + L +Y+ A+ + + V G
Sbjct: 24 RSQQKKKTSPLNYKERLFVLTKSMLTYYEG--RAEKKYRKGFIDVSKIKCVEIVKNDDGV 81
Query: 1046 FIIKLEVPAADGMSE--MFLRCENEEQYASWMAACRLQLTENNS 1087
+ + P +++ + + W+ + ++ NN+
Sbjct: 82 IPCQNKYPFQVVHDANTLYIFAPSPQSRDLWVKKLKEEIKNNNN 125
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection,
cytoplasm, cytoskeleton, membrane, phosphoprotein,
structural protein; NMR {Mus musculus}
Length = 128
Score = 36.6 bits (84), Expect = 0.009
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 891 WLDSSLSIYEQGVKEFDTLRLRFKFY 916
WLD ++ EQGV+E +TL LR KF+
Sbjct: 99 WLDHGRTLREQGVEEHETLLLRRKFF 124
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics
consortium, GTPase activation, SGC, binding, nucleus,
phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB:
3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 38.2 bits (88), Expect = 0.013
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 996 KAYKRLWVTCRELQLRFYKSREDAQHSSPINEFS-LRGCEVT----PDVNLSQGKFIIKL 1050
+ +++ W T + +L ++K DA + S G V P I +
Sbjct: 284 EGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGITI 343
Query: 1051 EVPAADGMSEMFLRCENEEQYASWMAA 1077
P + CE E W+AA
Sbjct: 344 VTPD----RKFLFACETESDQREWVAA 366
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton,
M phosphoprotein, cell adhesion, structural protein;
1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Length = 371
Score = 37.2 bits (86), Expect = 0.023
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 891 WLDSSLSIYEQGVKEFDTLRLRFKFYSIYDLNAKTDAVQVNL 932
WLD ++ EQGV+E +TL LR KF+ D VQ+NL
Sbjct: 144 WLDHGRTLREQGVEEHETLLLRRKFFYSDQNVDSRDPVQLNL 185
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 35.1 bits (81), Expect = 0.024
Identities = 10/84 (11%), Positives = 26/84 (30%), Gaps = 8/84 (9%)
Query: 995 MKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRG-CEVTPDVNLSQGKFIIKLEVP 1053
K + W + + +Y S + + L C V + K + ++
Sbjct: 21 RKNWTERWFVLKPNIISYYVSEDLKD---KKGDILLDENCCVESLPDKDGKKCLFLVKCF 77
Query: 1054 AADGMSEMFLRCENEEQYASWMAA 1077
+ ++++ W+ A
Sbjct: 78 ----DKTFEISASDKKKKQEWIQA 97
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm,
membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 117
Score = 35.0 bits (80), Expect = 0.026
Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 10/104 (9%)
Query: 984 YLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRG----CEVT-PD 1038
+L + + +V ++ FY S +D + S+P + VT D
Sbjct: 6 WLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQTD 65
Query: 1039 V---NLSQGKFIIKLEVP--AADGMSEMFLRCENEEQYASWMAA 1077
V + + I ++ + L + E+ W++
Sbjct: 66 VYRADAKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSR 109
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 34.9 bits (80), Expect = 0.033
Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 995 MKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVT--------PDVNLSQGKF 1046
K +K R+ + + + P+ FSLRG V+ V +
Sbjct: 31 RKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGN 90
Query: 1047 IIKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
+ K+ + +++ ++ + A W+ A
Sbjct: 91 LFKVITK---DDTHYYIQASSKAERAEWIEA 118
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB:
2z0o_A 2elb_A
Length = 385
Score = 36.5 bits (83), Expect = 0.046
Identities = 12/95 (12%), Positives = 28/95 (29%), Gaps = 7/95 (7%)
Query: 983 DYLRCLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTPDVNLS 1042
YL + R + + L + + C V V+
Sbjct: 282 GYLNARNKTGLVSSTWDRQFYFTQGGNLMSQAR----GDVAGGLAMDIDNCSVMA-VDCE 336
Query: 1043 QGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
++ ++ DG L+ E+++ + W+
Sbjct: 337 DRRYCFQITSF--DGKKSSILQAESKKDHEEWICT 369
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR {Mus
musculus} SCOP: b.55.1.1
Length = 126
Score = 34.2 bits (78), Expect = 0.067
Identities = 13/103 (12%), Positives = 27/103 (26%), Gaps = 17/103 (16%)
Query: 984 YLRCLKPKRFTMKAYKRLWVTC--RELQLRFYKSRED--AQHSSPINEFSLRGCEVTPDV 1039
+L + + R + + L +Y A + + L
Sbjct: 20 FLDIEDNENS--GKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIA 77
Query: 1040 NLSQGK-----FIIKLEVPAADGMSEMFLRCENEEQYASWMAA 1077
Q F+I FL+ +++ W+ A
Sbjct: 78 TPKQKPKTPFCFVIN------ALSQRYFLQANDQKDLKDWVEA 114
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta
sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 32.2 bits (73), Expect = 0.25
Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 13/100 (13%)
Query: 995 MKAYKRLW-VTCRELQLRFYKSREDAQ-------HSSPINEFSLRGCEVTPDVNLSQGKF 1046
+K +K+ W + L +Y + IN + + C T +
Sbjct: 18 LKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRDTQPPDGKSKDC 77
Query: 1047 IIKLEVPAADGMSEMFLRCENEEQYASWMAACRLQLTENN 1086
++++ + L E+ + +W LQ + N
Sbjct: 78 MLQIVCR---DGKTISLCAESTDDCLAWKFT--LQDSRTN 112
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.35
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 23/47 (48%)
Query: 578 EKNTIVNSYNRNFTGR-----NDANPATHAFVTSPELVTALAIKGTL 619
EK + + +D+ P ALAIK T+
Sbjct: 18 EKQAL-----KKLQASLKLYADDSAP-------------ALAIKATM 46
Score = 31.8 bits (71), Expect = 0.60
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 12/35 (34%)
Query: 512 SIAKEAMAHGLKSS-TPFNVTPGSE---QIRATIE 542
++ K L++S + S I+AT+E
Sbjct: 21 ALKK------LQASLKLY--ADDSAPALAIKATME 47
Score = 29.9 bits (66), Expect = 2.3
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 739 ENGEMNKVKNQLTGQYGPVNEVARAYKAA 767
E + K++ L Y + A A KA
Sbjct: 18 EKQALKKLQASLK-LYADDSAPALAIKAT 45
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Length = 125
Score = 31.9 bits (72), Expect = 0.36
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 8/96 (8%)
Query: 987 CLKPKRFTMKAYKRLWVTCRELQLRFYKSREDAQHSSPINEFSLRGCEVTP-DVNLSQGK 1045
+ K W L +YK D + S+ ++ + K
Sbjct: 19 TINNIGIMKGGSKEYWFVLTAENLSWYK---DDEEKEKKYMLSVDNLKLRDVEKGFMSSK 75
Query: 1046 FIIKLEVPAADGM----SEMFLRCENEEQYASWMAA 1077
I L + ++ L CE +E+ SW A+
Sbjct: 76 HIFALFNTEQRNVYKDYRQLELACETQEEVDSWKAS 111
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics
conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A
2he7_A 2rq1_A
Length = 296
Score = 32.6 bits (74), Expect = 0.58
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 891 WLDSSLSIYEQGVKEFDTLRLRFKFY 916
WLDS+ I +Q KFY
Sbjct: 72 WLDSAKEIKKQVRGVPWNFTFNVKFY 97
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase,
quorum quenching; HET: C6L GOL; 0.95A {Bacillus
thuringiensis serovar kurstakorganism_taxid} PDB:
3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Length = 254
Score = 31.6 bits (72), Expect = 1.1
Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 21/102 (20%)
Query: 167 HCDHLIEAQVGGVEDLKRAK---SQNEEVYAFLRSAGAKYGVGFWHPGSGIIHQIIL--- 220
H DH GG + E A R +Y P +
Sbjct: 110 HFDH-----AGGNGAFTNTPIIVQRTEYEAALHR---EEYMKECILP----HLNYKIIEG 157
Query: 221 ENYAFPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADI 262
+ PG+ ++ T H+P G L I + +V + D
Sbjct: 158 DYEVVPGVQLLYTPGHSP---GHQSLFIETEQSGSVLLTIDA 196
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small
molecular weight G-protein, complex, protein-protein
complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Length = 354
Score = 32.1 bits (73), Expect = 1.1
Identities = 13/138 (9%), Positives = 37/138 (26%), Gaps = 26/138 (18%)
Query: 974 DIMHVPELYDYL-------RCLKPKRFTMKAYKRLWVTCRELQLR----------FYKSR 1016
D+M + L + + L F + + + + R F ++
Sbjct: 187 DMMTLGRLRGFEGKLTAQGKLLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIIIFSEAL 246
Query: 1017 EDAQHSSPINEFSLRG------CEVTPDVNLSQGKFIIKLEVPAADGMSEMF-LRCENEE 1069
+ + + ++ +F + P +G + + L+ +
Sbjct: 247 GGGVRGGTQPGYVYKNSIKVSCLGLEGNLQGDPCRFALTSRGP--EGGIQRYVLQAADPA 304
Query: 1070 QYASWMAACRLQLTENNS 1087
+W+ L
Sbjct: 305 ISQAWIKHVAQILESQRD 322
>3equ_A PBP-2, penicillin-binding protein 2; class B transpeptidase, cell
DIV cell inner membrane, cell membrane, cell shape; HET:
SEP; 2.40A {Neisseria gonorrhoeae} PDB: 3eqv_A*
Length = 542
Score = 31.4 bits (72), Expect = 1.7
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 15/64 (23%)
Query: 619 LAFDPRSDTLTGSDGKPFKLRDPFGDELPTKGFDPGVDTYQPPPKDGSS--LSVDVDPKS 676
L+ + D+L G DG LRD G+ + + P++G LS+D
Sbjct: 155 LSLE---DSLYGEDGAEVVLRDRQGNIVDSLDSPRNK-----APQNGKDIILSLD----- 201
Query: 677 QRLQ 680
QR+Q
Sbjct: 202 QRIQ 205
>3ue3_A Septum formation, penicillin binding protein 3, peptidoglycan
synthetase; transpeptidase, transferase; 2.30A
{Acinetobacter}
Length = 554
Score = 31.5 bits (72), Expect = 1.8
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 17/64 (26%)
Query: 619 LAFDPRSDTLTGSDGKPFKLRDPFGDELPTKGFDPGVDTYQPPPKDGSS--LSVDVDPKS 676
+ + L G DG+ +RD G+ L + + + G + LS+D
Sbjct: 166 MQLN---TRLAGVDGEQKIIRDKKGNRL------KVSEVIK-EVESGENITLSID----- 210
Query: 677 QRLQ 680
RLQ
Sbjct: 211 SRLQ 214
>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance,
cell WALL, transmembrane; 2.4A {Streptococcus
pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1
PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B*
2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A*
2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C*
Length = 702
Score = 30.9 bits (70), Expect = 2.9
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 16/64 (25%)
Query: 619 LAFDPRSDTLTGSDGKPFKLRDPFGDELPTKGFDPGVDTYQPPPKDGSS--LSVDVDPKS 676
+ + L G+DG +D G+ + PG + DG ++
Sbjct: 173 SSLN---SILAGTDGIITYEKDRLGNIV------PGTEQVSQRTMDGKDVYTTIS----- 218
Query: 677 QRLQ 680
LQ
Sbjct: 219 SPLQ 222
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
2z0p_A* 1bwn_A*
Length = 169
Score = 29.5 bits (65), Expect = 3.6
Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 23/123 (18%)
Query: 986 RCLKPKRFTMKAYKRLWVTCRELQLRFYKSR-EDAQHSSPINEFSLRGCEVTPDVNLSQG 1044
R + K+ + +K+ +L +Y+ E + S + V +
Sbjct: 12 RSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKN 71
Query: 1045 KFIIKLEVPAADGMSEM----------------------FLRCENEEQYASWMAACRLQL 1082
+ + SEM ++ EE W+ + +
Sbjct: 72 PPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVI 131
Query: 1083 TEN 1085
N
Sbjct: 132 RYN 134
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP:
b.55.1.1
Length = 178
Score = 29.8 bits (66), Expect = 3.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 1050 LEVPAADGMSEMFLRCENEEQYASWMAA 1077
LE+ AADG +FLR ++E SW A
Sbjct: 144 LEICAADGQDAVFLRAKDEASARSWAGA 171
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Length = 117
Score = 28.9 bits (65), Expect = 3.8
Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 16/94 (17%)
Query: 995 MKAYKRLWVTCRE--LQLRFYKSREDAQHSSPINEFSLRGCE-VTPDVNL------SQGK 1045
MK +K W + QLR+Y R D + L E V P K
Sbjct: 21 MKPWKARWFVLDKTKHQLRYYDHRMD---TECKGVIDLAEVEAVAPGTPTIGAPKTVDEK 77
Query: 1046 FIIKLEVPAADGMSEMFLRCENEEQYASWMAACR 1079
++ ++ W+ +
Sbjct: 78 AFFDVKTTRR----VYNFCAQDVPSAQQWVDRIQ 107
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein,
metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium
loti} PDB: 3aj0_A
Length = 274
Score = 29.6 bits (67), Expect = 4.9
Identities = 17/119 (14%), Positives = 28/119 (23%), Gaps = 31/119 (26%)
Query: 167 HCDHLIEAQVGGVEDLKRAK---SQNEEVYAFLRSAGAK--YGVGFWHPGSGIIHQIILE 221
H DH GG + AK ++E A Y + + +
Sbjct: 98 HFDH-----CGGNKYFPHAKKICHRSEVPQACNPQPFEHLGYSDLSFSAEAAEARGATAQ 152
Query: 222 NYA------------------FPGLLMIGTDSHTPNGGGLGGLCIGVGGADAVDVMADI 262
G+ +I T H+ G L + + D
Sbjct: 153 LLEGTTRANSTFEGIDGDVDLARGVKLISTPGHSI---GHYSLLVEFPRRKPILFTIDA 208
>3pbt_A Penicillin-binding protein 3; PBP3, hydrolase-antibiotic complex;
HET: UE1; 1.64A {Pseudomonas aeruginosa} PDB: 3pbn_A*
3pbo_A* 3pbr_A* 3pbs_A* 3pbq_A* 3oc2_A 3ocl_A* 3ocn_A*
Length = 538
Score = 29.9 bits (68), Expect = 6.1
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 17/64 (26%)
Query: 619 LAFDPRSDTLTGSDGKPFKLRDPFGDELPTKGFDPGVDTYQPPPKDGSS--LSVDVDPKS 676
LAFD + L G GK L+D G + V + K G + LS+D
Sbjct: 139 LAFD---EWLAGVPGKRQVLKDRRGRVI------KDVQVTK-NAKPGKTLALSID----- 183
Query: 677 QRLQ 680
RLQ
Sbjct: 184 LRLQ 187
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell
divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Length = 579
Score = 29.3 bits (66), Expect = 8.0
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
Query: 423 ATLREDIAKEAMKYQSLLTPDEGAKYDQLIELDLNTLEPHVNGPFTPDLAHPINKLGEAA 482
A ++ + + + + +++ + P P LA + A
Sbjct: 183 AYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTPVQPMLAEACKSVEYAM 242
Query: 483 KK--NGWPMDIK 492
KK NG +IK
Sbjct: 243 KKCPNGMFSEIK 254
>2gp4_A 6-phosphogluconate dehydratase; N-terminal domain largely
alpha-helical, C-terminal domain M beta-sheet
(trefoil-like); 2.49A {Shewanella oneidensis} SCOP:
c.8.2.2 d.334.1.1
Length = 628
Score = 29.5 bits (67), Expect = 8.1
Identities = 7/16 (43%), Positives = 8/16 (50%), Gaps = 4/16 (25%)
Query: 309 YHGPGIDNISCTGMGT 324
YH G +CT GT
Sbjct: 235 YHSAG----TCTFYGT 246
Score = 29.5 bits (67), Expect = 8.1
Identities = 7/16 (43%), Positives = 8/16 (50%), Gaps = 4/16 (25%)
Query: 348 YHGPGIDNISCTGMGT 363
YH G +CT GT
Sbjct: 235 YHSAG----TCTFYGT 246
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 29.2 bits (65), Expect = 8.7
Identities = 7/66 (10%), Positives = 17/66 (25%)
Query: 1020 QHSSPINEFSLRGCEVTPDVNLSQGKFIIKLEVPAADGMSEMFLRCENEEQYASWMAACR 1079
+H P +R + + + L C + E ++ +
Sbjct: 303 RHMIPTEALQVRALPSADAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVH 362
Query: 1080 LQLTEN 1085
L +
Sbjct: 363 SILRDK 368
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis,
cobalamin, SAM, SAH, uroporphyrin methyltransferase;
HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP:
c.90.1.1
Length = 280
Score = 29.1 bits (66), Expect = 8.7
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 7/53 (13%)
Query: 507 MSRCASIAKEAMAHGLKSSTPFNV-----TPGSEQIRATIERDGIAQTLREFG 554
M +I +A G P TP + T+ R + G
Sbjct: 186 MKHIGAITANLIAGGRSPDEPVAFVCNAATPQQAVLETTLAR--AEADVAAAG 236
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.397
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,839,484
Number of extensions: 1070530
Number of successful extensions: 2238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2181
Number of HSP's successfully gapped: 115
Length of query: 1087
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 983
Effective length of database: 3,798,009
Effective search space: 3733442847
Effective search space used: 3733442847
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.2 bits)