BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3835
(1659 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 127/468 (27%), Positives = 200/468 (42%), Gaps = 103/468 (22%)
Query: 1236 EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 1293
EPR ++I R + LG ++VGG + GI++ + +G +G LR GD+IL NG DLR
Sbjct: 307 EPRRIVIH-RGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR 365
Query: 1294 XXXXXXXXXXXXKPADKVTVLAQYSVERYNEVKDK-----------------------PG 1330
VT++AQY E Y+ + K P
Sbjct: 366 NASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLMNSSLGSGTASLRSNPK 425
Query: 1331 DSFYMRALFS--RTGDLG---DALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQ 1385
FY+RALF +T D G AL RF D+L+V + G W+A V +D
Sbjct: 426 RGFYIRALFDYDKTKDCGFLSQALSFRF--GDVLHVIDA---GDEEWWQARRVHSDSETD 480
Query: 1386 QCGIIPSKYKVEEELLLRRSLGDLESDXXXXXXXXXXXXKKHQRSDSKELASFSNINLGW 1445
G IPSK +VE RR L++ W
Sbjct: 481 DIGFIPSKRRVE-----RREWSRLKAKD-------------------------------W 504
Query: 1446 YSDSGTLN-EDSVSLASYQRVIRLNSEPVLRPVILVGALSDTVTDKLLQDFPDKFVRCAP 1504
S SG+ EDSV SY+ V ++ RP+I++G D D LL +FPDKF C P
Sbjct: 505 GSSSGSQGREDSV--LSYETVTQMEVH-YARPIIILGPTKDRANDDLLSEFPDKFGSCVP 561
Query: 1505 EIMH---------------CPQAAMEKGLADNLFVDYRKKGAYFECTSVAAVKDACDKNN 1549
+ MEK + + F++ + ++ TSV +V++ ++
Sbjct: 562 HTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYGTSVQSVREVAEQGK 621
Query: 1550 AHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEM 1609
H ILDVS V RL H++PI + I+ +S + + EI + ++T + A++
Sbjct: 622 -HCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINK----------RITEEQARKA 670
Query: 1610 YEHGLKIECEHKHYISAVIPAGVNIAYMCTQIQTAVELEQSKTLWVPS 1657
++ K+E E SA++ G + + +++ +E +WVP+
Sbjct: 671 FDRATKLEQEFTECFSAIV-EGDSFEEIYHKVKRVIEDLSGPYIWVPA 717
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 1126 PGELRRVHIDKSVEPLGIQIQCLDSG-GVFVSTVSEHSLASQVG-LQVGDQLLEVCGINM 1183
P E RR+ I + LG I + G G+F+S + A G L+ GDQ+L V G+++
Sbjct: 305 PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 364
Query: 1184 RSATYQLAASVLRQCGNSITMLVQYSPDKY 1213
R+A+++ AA L+ G ++T++ QY P++Y
Sbjct: 365 RNASHEQAAIALKNAGQTVTIIAQYKPEEY 394
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 72/139 (51%), Gaps = 13/139 (9%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARSLVTTQLQLNNSYDH 825
+VND I+ VN +D V+ +E ++ +G+ + + RR+ A ++ +L +
Sbjct: 109 RVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKL-IKGPKGL 167
Query: 826 GLTLESG-----------LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGM 874
G ++ G +Y+ KI G A K+G L +GD++L++N+ ++ + + +
Sbjct: 168 GFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMH-EDAV 226
Query: 875 ALLSDSPDVLTITTLKPTS 893
A L ++ DV+ + KP++
Sbjct: 227 AALKNTYDVVYLKVAKPSN 245
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 98/198 (49%), Gaps = 23/198 (11%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKGSVT--DGKLKKKEEVARIKKQCEDMNQEK 131
N LG + GG D+P +D SI+++ I+ G DG+L+ + + + + D+ +
Sbjct: 69 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV--DVREVT 126
Query: 132 NTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVTNYLD 191
++A E LK+ + +R + +R + ++ + +K I + +
Sbjct: 127 HSAAVE--ALKE-AGSIVRLY--VMRRKPPAEKVME---------IKLIKGPKGLGFSIA 172
Query: 192 GLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMA 251
G + N + G ++ +Y+ KI G A K+G L +GD++L++N+ ++ + + +A
Sbjct: 173 G-GVGNQHIPG---DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMH-EDAVA 227
Query: 252 LLSDSPDVLTITTLKPTS 269
L ++ DV+ + KP++
Sbjct: 228 ALKNTYDVVYLKVAKPSN 245
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 66 MNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSVT--DGKLKKKEEVARIKK- 122
M + + + LG + GG + P D+SIYV+ I++G DG+L+ +++ +
Sbjct: 156 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSV 215
Query: 123 QCEDMNQEKNTA 134
ED+ E A
Sbjct: 216 GLEDVMHEDAVA 227
Score = 33.9 bits (76), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 208 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 267
G++I I G A G L GD++LS+N + S + +AL + V I KP
Sbjct: 332 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 391
Query: 268 TSLGEHSPRVH 278
++H
Sbjct: 392 EEYSRFEAKIH 402
Score = 33.9 bits (76), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 832 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 891
G++I I G A G L GD++LS+N + S + +AL + V I KP
Sbjct: 332 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 391
Query: 892 TSLGEHSPRVH 902
++H
Sbjct: 392 EEYSRFEAKIH 402
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 149/344 (43%), Gaps = 80/344 (23%)
Query: 1332 SFYMRALFSRTGDLGDALQLR---FHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCG 1388
S Y+RALF + D L R F DIL+V N + W+A V D +Q G
Sbjct: 5 SLYVRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDE---WWQARRVLGDNEDEQIG 61
Query: 1389 IIPSKYKVEEELLLRRSLGDLESDXXXXXXXXXXXXKKHQRSDSKELASFSNINLGWYSD 1448
I+PSK + E ++ R D
Sbjct: 62 IVPSKRRWERKMRAR--------------------------------------------D 77
Query: 1449 SGTLNEDSVSLASYQRVIRLNSEPVLRPVILVGALSDTVTDKLLQDFPDKFVRCAPEIMH 1508
+E++V SY+ V RL S RPVI++G L D + D L+ ++PDKF C P
Sbjct: 78 RSVKSEENV--LSYEAVQRL-SINYTRPVIILGPLKDRINDDLISEYPDKFGSCVPHTTR 134
Query: 1509 ---------------CPQAAMEKGLADNLFVDYRKKGAYFECTSVAAVKDACDKNNAHVI 1553
+ ME+ + ++LF++ + TSVA+V++ +K H I
Sbjct: 135 PKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGK-HCI 193
Query: 1554 LDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHG 1613
LDVS ++RL +YP+ + IK KS + E+ ++T + AK+ YE
Sbjct: 194 LDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNR----------RMTEEQAKKTYERA 243
Query: 1614 LKIECEHKHYISAVIPAGVNIAYMCTQIQTAVELEQSKTLWVPS 1657
+K+E E Y + V+ G I + +++++ + + T+WVPS
Sbjct: 244 IKMEQEFGEYFTGVV-QGDTIEEIYSKVKSMIWSQSGPTIWVPS 286
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 110 bits (275), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 104/422 (24%), Positives = 182/422 (43%), Gaps = 52/422 (12%)
Query: 1241 MIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRXXXXXXX 1300
+++ RK ++G+ L GGN VGI+V V S GL GD+IL N D
Sbjct: 4 LVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEA 63
Query: 1301 XXXXXK--PADKVTVLAQYSVERYNE-VKDKPGDSFYMRALFSRTGDLGDALQLRFHKDD 1357
++VT+LAQ + Y V+ GDSFY+R F + L F+K +
Sbjct: 64 VLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKE--SPYGLSFNKGE 121
Query: 1358 ILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYKVEE----ELLLRRSLGDLESDX 1413
+ V +T++NG G W A + + + GIIP+K + E+ + L ++ G +D
Sbjct: 122 VFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGDRAD- 180
Query: 1414 XXXXXXXXXXXKKHQRSDSKELASFSNINLGWYSDSGTLNEDSVSLASYQRVIRLNSEPV 1473
K++ R ++L++ +Y+RV+ L
Sbjct: 181 -FWRFRGLRSSKRNLRKSREDLSA---------------QPVQTKFPAYERVV-LREAGF 223
Query: 1474 LRPVILVGALSDTVTDKLLQDFPDKFVRCAPEIMHCPQAAMEKGLADNLFVDYRKKGAYF 1533
LRPV + G ++D +KL ++ PD + E P+ A D R G
Sbjct: 224 LRPVTIFGPIADVAREKLAREEPDIYQIAKSE----PRDAG---------TDQRSSG--- 267
Query: 1534 ECTSVAAVKDACDKNNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDG 1593
+ +K D++ H +LDV+ V+RL+ YPIV+ + S + +K ++
Sbjct: 268 -IIRLHTIKQIIDQDK-HALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR----- 320
Query: 1594 RYSSLDKVTAKAAKEMYEHGLKIECEHKHYISAVIPAGVNIAYMCTQIQTAVELEQSKTL 1653
L + K+A+++YE K+ + H + I ++ A++ +Q++ +
Sbjct: 321 --MRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLV 378
Query: 1654 WV 1655
WV
Sbjct: 379 WV 380
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 1141 LGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQC-- 1198
+G+++ + G+FV+ V E S A++ GL+ GDQ+L V ++ + + A L
Sbjct: 13 VGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPK 72
Query: 1199 GNSITMLVQYSPDKYHELXXXXXXXXXXXXXXXRGSGEPRFLM--IETRKCSNLGISLVG 1256
G +T+L Q D Y + G+ ++ E K S G+S
Sbjct: 73 GEEVTILAQKKKDVYRRIVESDV-------------GDSFYIRTHFEYEKESPYGLSFNK 119
Query: 1257 GNAVGIYVHSVQSGSLGYSAGLRTG 1281
G + V ++ +G LG +R G
Sbjct: 120 GEVFRV-VDTLYNGKLGSWLAIRIG 143
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 110 bits (274), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 105/426 (24%), Positives = 183/426 (42%), Gaps = 52/426 (12%)
Query: 1237 PRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRXXX 1296
P +++ RK ++G+ L GGN VGI+V V S GL GD+IL N D
Sbjct: 8 PSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNII 67
Query: 1297 XXXXXXXX--XKPADKVTVLAQYSVERYNE-VKDKPGDSFYMRALFSRTGDLGDALQLRF 1353
++VT+LAQ + Y V+ GDSFY+R F + L F
Sbjct: 68 REEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKE--SPYGLSF 125
Query: 1354 HKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYKVEE----ELLLRRSLGDL 1409
+K ++ V +T++NG G W A + + + GIIP+K + E+ + L ++ G
Sbjct: 126 NKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGD 185
Query: 1410 ESDXXXXXXXXXXXXKKHQRSDSKELASFSNINLGWYSDSGTLNEDSVSLASYQRVIRLN 1469
+D K++ R ++L++ +Y+RV+ L
Sbjct: 186 RAD--FWRFRGLRSSKRNLRKSREDLSA---------------QPVQTKFPAYERVV-LR 227
Query: 1470 SEPVLRPVILVGALSDTVTDKLLQDFPDKFVRCAPEIMHCPQAAMEKGLADNLFVDYRKK 1529
LRPV + G ++D +KL ++ PD + E P+ A D R
Sbjct: 228 EAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSE----PRDAG---------TDQRSS 274
Query: 1530 GAYFECTSVAAVKDACDKNNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKE 1589
G + +K D++ H +LDV+ V+RL+ YPIV+ + S + +K ++
Sbjct: 275 G----IIRLHTIKQIIDQDK-HALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR- 328
Query: 1590 IRDGRYSSLDKVTAKAAKEMYEHGLKIECEHKHYISAVIPAGVNIAYMCTQIQTAVELEQ 1649
L + K+A+++YE K+ + H + I ++ A++ +Q
Sbjct: 329 ------MRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQ 382
Query: 1650 SKTLWV 1655
++ +WV
Sbjct: 383 NQLVWV 388
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 1141 LGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQC-- 1198
+G+++ + G+FV+ V E S A++ GL+ GDQ+L V ++ + + A L
Sbjct: 21 VGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPK 80
Query: 1199 GNSITMLVQYSPDKYHELXXXXXXXXXXXXXXXRGSGEPRFLM--IETRKCSNLGISLVG 1256
G +T+L Q D Y + G+ ++ E K S G+S
Sbjct: 81 GEEVTILAQKKKDVYRRIVESDV-------------GDSFYIRTHFEYEKESPYGLSFNK 127
Query: 1257 GNAVGIYVHSVQSGSLGYSAGLRTG 1281
G + V ++ +G LG +R G
Sbjct: 128 GEVFRV-VDTLYNGKLGSWLAIRIG 151
>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold
Proteins As Specific Phospho-Protein Binding Modules
Length = 296
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 149/346 (43%), Gaps = 84/346 (24%)
Query: 1332 SFYMRALFS--RTGDLGDALQ-LRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCG 1388
S Y+RALF +T D G Q L F DIL+V N + W+A V DG + G
Sbjct: 11 SLYVRALFDYDKTKDSGLPSQGLNFKFGDILHVINASDDE---WWQARQVTPDGESDEVG 67
Query: 1389 IIPSKYKVEEELLLRRSLGDLESDXXXXXXXXXXXXKKHQRSDSKELASFSNINLGWYSD 1448
+IPSK +VE+ KE A +
Sbjct: 68 VIPSKRRVEK----------------------------------KERARLKTVKF----- 88
Query: 1449 SGTLNEDSVSLASYQRVIRLNSEPV--LRPVILVGALSDTVTDKLLQDFPDKFVRCAPEI 1506
+ + SY+ V N + V RPVI++G + D V D L+ +FPDKF C P
Sbjct: 89 -------NSKVLSYEPV---NQQEVNYTRPVIILGPMKDRVNDDLISEFPDKFGSCVPHT 138
Query: 1507 MH---------------CPQAAMEKGLADNLFVDYRKKGAYFECTSVAAVKDACDKNNAH 1551
+ MEK + ++ F++ + + TSV +V+ +K H
Sbjct: 139 TRPKRDYEVDGRDYHFVTSREQMEKDIQEHKFIEAGQYNNHLYGTSVQSVRAVAEKGK-H 197
Query: 1552 VILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYE 1611
ILDVS ++RL +YPI + IK KS + I E+ + ++T + A++ +E
Sbjct: 198 CILDVSGNAIKRLQIAQLYPISIFIKPKSMENIMEMNK----------RLTDEQARKTFE 247
Query: 1612 HGLKIECEHKHYISAVIPAGVNIAYMCTQIQTAVELEQSKTLWVPS 1657
+++E E + +A++ G + + Q++ +E + +WVP+
Sbjct: 248 RAVRLEQEFTEHFTAIV-QGDTLEDIYNQVKQIIEEQSGPYIWVPA 292
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 150/346 (43%), Gaps = 77/346 (22%)
Query: 1333 FYMRALFS--RTGDLG---DALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQC 1387
FY+RALF +T D G AL RF D+L+V + G W+A V +D
Sbjct: 8 FYIRALFDYDKTKDCGFLSQALSFRF--GDVLHVIDA---GDEEWWQARRVHSDSETDDI 62
Query: 1388 GIIPSKYKVEEELLLRRSLGDLESDXXXXXXXXXXXXKKHQRSDSKELASFSNINLGWYS 1447
G IPSK +VE RR L++ W S
Sbjct: 63 GFIPSKRRVE-----RREWSRLKAKD-------------------------------WGS 86
Query: 1448 DSGTLN-EDSVSLASYQRVIRLNSEPVLRPVILVGALSDTVTDKLLQDFPDKFVRCAPEI 1506
SG+ EDSV SY+ V ++ RP+I++G D D LL +FPDKF C P
Sbjct: 87 SSGSQGREDSV--LSYETVTQMEVH-YARPIIILGPTKDRANDDLLSEFPDKFGSCVPHT 143
Query: 1507 MH---------------CPQAAMEKGLADNLFVDYRKKGAYFECTSVAAVKDACDKNNAH 1551
+ MEK + + F++ + ++ TSV +V++ ++ H
Sbjct: 144 TRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGK-H 202
Query: 1552 VILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYE 1611
ILDVS V RL H++PI + I+ +S + + EI + ++T + A++ ++
Sbjct: 203 CILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINK----------RITEEQARKAFD 252
Query: 1612 HGLKIECEHKHYISAVIPAGVNIAYMCTQIQTAVELEQSKTLWVPS 1657
K+E E SA++ G + + +++ +E +WVP+
Sbjct: 253 RATKLEQEFTECFSAIV-EGDSFEEIYHKVKRVIEDLSGPYIWVPA 297
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 100 bits (249), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 148/346 (42%), Gaps = 77/346 (22%)
Query: 1333 FYMRALFSR-----TGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQC 1387
FY+RALF G L AL RF D+L+V + G W+A V +D
Sbjct: 2 FYIRALFDYDKTKDCGFLSQALSFRF--GDVLHVIDA---GDEEWWQARRVHSDSETDDI 56
Query: 1388 GIIPSKYKVEEELLLRRSLGDLESDXXXXXXXXXXXXKKHQRSDSKELASFSNINLGWYS 1447
G IPSK +VE RR L++ W S
Sbjct: 57 GFIPSKRRVE-----RREWSRLKAK-------------------------------DWGS 80
Query: 1448 DSGTLN-EDSVSLASYQRVIRLNSEPVLRPVILVGALSDTVTDKLLQDFPDKFVRCAPEI 1506
SG+ EDSV SY+ V ++ RP+I++G D D LL +FPDKF C P
Sbjct: 81 SSGSQGREDSV--LSYETVTQMEVH-YARPIIILGPTKDRANDDLLSEFPDKFGSCVPHT 137
Query: 1507 MH---------------CPQAAMEKGLADNLFVDYRKKGAYFECTSVAAVKDACDKNNAH 1551
+ MEK + + F++ + ++ TSV +V++ ++ H
Sbjct: 138 TRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGK-H 196
Query: 1552 VILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYE 1611
ILDVS V RL H++PI + I+ +S + + EI + ++T + A++ ++
Sbjct: 197 CILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINK----------RITEEQARKAFD 246
Query: 1612 HGLKIECEHKHYISAVIPAGVNIAYMCTQIQTAVELEQSKTLWVPS 1657
K+E E SA++ G + + +++ +E +WVP+
Sbjct: 247 RATKLEQEFTECFSAIV-EGDSFEEIYHKVKRVIEDLSGPYIWVPA 291
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain Of
Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 59/88 (67%)
Query: 1123 KPHPGELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGIN 1182
+P+ E R V + K EPLGI I + GG++VS V+ S+A Q GL+ GDQLLE GIN
Sbjct: 14 RPYVEEPRHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGIN 73
Query: 1183 MRSATYQLAASVLRQCGNSITMLVQYSP 1210
+RSAT Q A ++ Q ++IT+L QY+P
Sbjct: 74 LRSATEQQARLIIGQQCDTITILAQYNP 101
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 1236 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRXX 1295
EPR + ++ + LGIS+V G GIYV V GS+ + AGL GD++LE+NG +LR
Sbjct: 19 EPRHVKVQ-KGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSA 77
Query: 1296 XXXXXXXXXXKPADKVTVLAQYS 1318
+ D +T+LAQY+
Sbjct: 78 TEQQARLIIGQQCDTITILAQYN 100
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
+ G+Y+ K++ GS+A + G L GD++L N L SA E A L TIT
Sbjct: 41 KGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGIN---LRSATEQQARLIIGQQCDTITI- 95
Query: 266 KPTSLGEHSPRVHR 279
L +++P VH+
Sbjct: 96 ----LAQYNPHVHQ 105
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
+ G+Y+ K++ GS+A + G L GD++L N L SA E A L TIT
Sbjct: 41 KGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGIN---LRSATEQQARLIIGQQCDTITI- 95
Query: 890 KPTSLGEHSPRVHR 903
L +++P VH+
Sbjct: 96 ----LAQYNPHVHQ 105
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
Length = 194
Score = 76.3 bits (186), Expect = 1e-13, Method: Composition-based stats.
Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 5/165 (3%)
Query: 1237 PRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRXXX 1296
P +++ RK ++G+ L GGN VGI+V V S GL GD+IL N D
Sbjct: 1 PSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNII 60
Query: 1297 XXXXX--XXXXKPADKVTVLAQYSVERYNE-VKDKPGDSFYMRALFSRTGDLGDALQLRF 1353
++VT+LAQ + Y V+ GDSFY+R F + L F
Sbjct: 61 REEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKE--SPYGLSF 118
Query: 1354 HKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYKVEE 1398
+K ++ V +T++NG G W A + + + GIIP+K + E+
Sbjct: 119 NKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQ 163
Score = 36.6 bits (83), Expect = 0.12, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 1139 EPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQC 1198
+ +G+++ + G+FV+ V E S A++ GL+ GDQ+L V ++ + + A L
Sbjct: 12 DSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDL 71
Query: 1199 --GNSITMLVQYSPDKYHEL 1216
G +T+L Q D Y +
Sbjct: 72 PKGEEVTILAQKKKDVYRRI 91
>pdb|3KFV|A Chain A, Crystal Structure Of The Sh3-Kinase Fragment Of Tight
Junction Protein 3 (Tjp3) In Apo-Form
Length = 308
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 132/341 (38%), Gaps = 62/341 (18%)
Query: 1330 GDSFYMRALF----SRTGDLGDALQLRFHKDDILYVDNTMFNGVP------GHWRAWLVD 1379
GDSFY+R F S LG F + D+ +V +T+ G GHW A
Sbjct: 2 GDSFYIRTHFELEPSPPSGLG------FTRGDVFHVLDTLHPGPGQSHARGGHWLAVRXG 55
Query: 1380 ADGFRQQCGIIPSKYKVEEELLLRRSLGDLESDXXXXXXXXXXXXKKHQRSDSKELASFS 1439
D Q+ GIIP++ + E+ L LE+ + R+ E
Sbjct: 56 RDLREQERGIIPNQSRAEQ-------LASLEAAQRAVGVGPGSSAGSNARA---EFWRLR 105
Query: 1440 NINLGWYSDSGTLNEDSVSLA------SYQRVIRLNSEPVLRPVILVGALSDTVTDKLLQ 1493
+ G + ED +L Y+RV+ L RPV+++G ++D KL
Sbjct: 106 GLRRGAKKTTQRSREDLSALTRQGRYPPYERVV-LREASFKRPVVILGPVADIAXQKLTA 164
Query: 1494 DFPDKFVRCAPEIMHCPQAAMEKGLADNLFVDYRKKGAYFECTSVAAVKDACDKNNAHVI 1553
+ PD+F EI D K + V A KD H +
Sbjct: 165 EXPDQF-----EIAETVSR-----------TDSPSKIIKLDTVRVIAEKDK------HAL 202
Query: 1554 LDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHG 1613
LDV+ + +ERL+ YPIV+ +S +K +++ L + ++ + +Y
Sbjct: 203 LDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQW-------LAPASRRSTRRLYAQA 255
Query: 1614 LKIECEHKHYISAVIPAGVNIAYMCTQIQTAVELEQSKTLW 1654
K+ H +A IP +++ + +Q++ +W
Sbjct: 256 QKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQQTRPIW 296
>pdb|3LH5|A Chain A, Crystal Structure Of The Sh3-Guanylate Kinase Core Domain Of
Zo-1
Length = 251
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 129/326 (39%), Gaps = 78/326 (23%)
Query: 1330 GDSFYMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGI 1389
GDSFY+R F + L F+K ++ V +T++NG G W A + + + GI
Sbjct: 1 GDSFYIRTHFEYEKE--SPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGI 58
Query: 1390 IPSKYKVEEELLLRRSLGDLESDXXXXXXXXXXXXKKHQRSDSKELASFSNINLGWYSDS 1449
IP+K + E+ LAS +
Sbjct: 59 IPNKNRAEQ------------------------------------LASVQYV-------- 74
Query: 1450 GTLNEDSVSLASYQRVIRLNSEPVLRPVILVGALSDTVTDKLLQDFPDKFVRCAPEIMHC 1509
+Y+RV+ L LRPV + G ++D +KL ++ PD + E
Sbjct: 75 ------QTKFPAYERVV-LREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSE---- 123
Query: 1510 PQAAMEKGLADNLFVDYRKKGAYFECTSVAAVKDACDKNNAHVILDVSLAGVERLHRQHV 1569
P+ A D R G + +K D++ H +LDV+ V+RL+
Sbjct: 124 PRDAG---------TDQRSSG----IIRLHTIKQIIDQDK-HALLDVTPNAVDRLNYAQW 169
Query: 1570 YPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLKIECEHKHYISAVIP 1629
YPIV+ + S + +K ++ L + K+A+++YE K+ + H + I
Sbjct: 170 YPIVVFLNPDSKQGVKTMR-------MRLCPESRKSARKLYERSHKLRKNNHHLFTTTIN 222
Query: 1630 AGVNIAYMCTQIQTAVELEQSKTLWV 1655
++ A++ +Q++ +WV
Sbjct: 223 LNSMNDGWYGALKEAIQQQQNQLVWV 248
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 57.8 bits (138), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 1126 PGELRRVHIDKSVEPLGIQIQCLDSG-GVFVSTVSEHSLASQVG-LQVGDQLLEVCGINM 1183
P E RR+ I + LG I + G G+F+S + A G L+ GDQ+L V G+++
Sbjct: 9 PREPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 68
Query: 1184 RSATYQLAASVLRQCGNSITMLVQYSPDKY 1213
R+A+++ AA L+ G ++T++ QY P++Y
Sbjct: 69 RNASHEQAAIALKNAGQTVTIIAQYKPEEY 98
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 1236 EPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 1293
EPR ++I R + LG ++VGG GI++ + +G +G LR GD+IL NG DLR
Sbjct: 11 EPRRIVIH-RGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR 69
Query: 1294 XXXXXXXXXXXXKPADKVTVLAQYSVERYNEVKDK 1328
VT++AQY E Y+ + K
Sbjct: 70 NASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAK 104
Score = 30.8 bits (68), Expect = 6.7, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 208 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 267
G++I I G A G L GD++LS+N + S + +AL + V I KP
Sbjct: 36 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 95
Score = 30.8 bits (68), Expect = 6.7, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 832 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 891
G++I I G A G L GD++LS+N + S + +AL + V I KP
Sbjct: 36 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 95
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 57.8 bits (138), Expect = 5e-08, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 1126 PGELRRVHIDKSVEPLGIQIQCLDSG-GVFVSTVSEHSLASQVG-LQVGDQLLEVCGINM 1183
P E RR+ I + LG I + G G+F+S + A G L+ GDQ+L V G+++
Sbjct: 4 PREPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 63
Query: 1184 RSATYQLAASVLRQCGNSITMLVQYSPDKY 1213
R+A+++ AA L+ G ++T++ QY P++Y
Sbjct: 64 RNASHEQAAIALKNAGQTVTIIAQYKPEEY 93
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 1236 EPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 1293
EPR ++I R + LG ++VGG GI++ + +G +G LR GD+IL NG DLR
Sbjct: 6 EPRRIVIH-RGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR 64
Query: 1294 XXXXXXXXXXXXKPADKVTVLAQYSVERYN 1323
VT++AQY E Y+
Sbjct: 65 NASHEQAAIALKNAGQTVTIIAQYKPEEYS 94
Score = 30.8 bits (68), Expect = 6.9, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 208 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 267
G++I I G A G L GD++LS+N + S + +AL + V I KP
Sbjct: 31 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 90
Score = 30.8 bits (68), Expect = 6.9, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 832 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 891
G++I I G A G L GD++LS+N + S + +AL + V I KP
Sbjct: 31 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 90
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs Large
Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs Large
Homologue 2, Dlg2
Length = 102
Score = 57.8 bits (138), Expect = 6e-08, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 1128 ELRRVHIDKSVEPLGIQIQCLDSG-GVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRS 1185
E R+V + K LG I + G G+FVS + A G LQ GDQ+L V GI++R
Sbjct: 3 EPRKVVLHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRG 62
Query: 1186 ATYQLAASVLRQCGNSITMLVQYSPDKY 1213
A+++ AA+ L+ G ++T++ QY P+ Y
Sbjct: 63 ASHEQAAAALKGAGQTVTIIAQYQPEDY 90
Score = 47.0 bits (110), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 1234 SGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTD 1291
S EPR +++ + + LG ++VGG + GI+V + +G +G L+ GD+IL NG D
Sbjct: 1 SMEPRKVVLH-KGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELQRGDQILSVNGID 59
Query: 1292 LRXXXXXXXXXXXXKPADKVTVLAQYSVERYNEVKDK 1328
LR VT++AQY E Y + K
Sbjct: 60 LRGASHEQAAAALKGAGQTVTIIAQYQPEDYARFEAK 96
Score = 36.2 bits (82), Expect = 0.17, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 32/75 (42%)
Query: 208 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 267
G+++ I G A G L GD++LS+N + G S + AL V I +P
Sbjct: 28 GIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAALKGAGQTVTIIAQYQP 87
Query: 268 TSLGEHSPRVHRKSV 282
++H SV
Sbjct: 88 EDYARFEAKIHETSV 102
Score = 36.2 bits (82), Expect = 0.17, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 32/75 (42%)
Query: 832 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 891
G+++ I G A G L GD++LS+N + G S + AL V I +P
Sbjct: 28 GIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAALKGAGQTVTIIAQYQP 87
Query: 892 TSLGEHSPRVHRKSV 906
++H SV
Sbjct: 88 EDYARFEAKIHETSV 102
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 57.4 bits (137), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 1128 ELRRVHIDKSVEPLGIQIQCLDSG-GVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRS 1185
E R++ + K LG I + G G+FVS + A G L+ GD++L V G+N+R+
Sbjct: 15 EPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 74
Query: 1186 ATYQLAASVLRQCGNSITMLVQYSPDKY 1213
AT++ AA+ L++ G S+T++ QY P++Y
Sbjct: 75 ATHEQAAAALKRAGQSVTIVAQYRPEEY 102
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 1236 EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 1293
EPR +++ + + LG ++VGG + GI+V + +G +G LR GDRIL NG +LR
Sbjct: 15 EPRKIILH-KGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLR 73
Query: 1294 XXXXXXXXXXXXKPADKVTVLAQYSVERYN 1323
+ VT++AQY E Y+
Sbjct: 74 NATHEQAAAALKRAGQSVTIVAQYRPEEYS 103
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 57.4 bits (137), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 1128 ELRRVHIDKSVEPLGIQIQCLDSG-GVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRS 1185
E R++ + K LG I + G G+FVS + A G L+ GD++L V G+N+R+
Sbjct: 12 EPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 71
Query: 1186 ATYQLAASVLRQCGNSITMLVQYSPDKY 1213
AT++ AA+ L++ G S+T++ QY P++Y
Sbjct: 72 ATHEQAAAALKRAGQSVTIVAQYRPEEY 99
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 1236 EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 1293
EPR +++ + + LG ++VGG + GI+V + +G +G LR GDRIL NG +LR
Sbjct: 12 EPRKIILH-KGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLR 70
Query: 1294 XXXXXXXXXXXXKPADKVTVLAQYSVERYN 1323
+ VT++AQY E Y+
Sbjct: 71 NATHEQAAAALKRAGQSVTIVAQYRPEEYS 100
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv Peptide
Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein Complexed
With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz Domain
Of Post Synaptic Psd-95 Protein
Length = 119
Score = 57.4 bits (137), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 1126 PGELRRVHIDKSVEPLGIQIQCLDSG-GVFVSTVSEHSLASQVG-LQVGDQLLEVCGINM 1183
P E RR+ I + LG I + G G+F+S + A G L+ GDQ+L V G+++
Sbjct: 12 PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 71
Query: 1184 RSATYQLAASVLRQCGNSITMLVQYSPDKY 1213
R+A+++ AA L+ G ++T++ QY P++Y
Sbjct: 72 RNASHEQAAIALKNAGQTVTIIAQYKPEEY 101
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 1236 EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 1293
EPR ++I R + LG ++VGG + GI++ + +G +G LR GD+IL NG DLR
Sbjct: 14 EPRRIVIH-RGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR 72
Query: 1294 XXXXXXXXXXXXKPADKVTVLAQYSVERYN 1323
VT++AQY E Y+
Sbjct: 73 NASHEQAAIALKNAGQTVTIIAQYKPEEYS 102
Score = 30.4 bits (67), Expect = 8.3, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 208 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 267
G++I I G A G L GD++LS+N + S + +AL + V I KP
Sbjct: 39 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 98
Score = 30.4 bits (67), Expect = 8.3, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 832 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 891
G++I I G A G L GD++LS+N + S + +AL + V I KP
Sbjct: 39 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 98
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 57.0 bits (136), Expect = 8e-08, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 1126 PGELRRVHIDKSVEPLGIQIQCLDSG-GVFVSTVSEHSLASQVG-LQVGDQLLEVCGINM 1183
P E RR+ I + LG I + G G+F+S + A G L+ GDQ+L V G+++
Sbjct: 12 PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 71
Query: 1184 RSATYQLAASVLRQCGNSITMLVQYSPDKY 1213
R+A+++ AA L+ G ++T++ QY P++Y
Sbjct: 72 RNASHEQAAIALKNAGQTVTIIAQYKPEEY 101
Score = 50.8 bits (120), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 1236 EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 1293
EPR ++I R + LG +++GG + GI++ + +G +G LR GD+IL NG DLR
Sbjct: 14 EPRRIVIH-RGSTGLGFNIIGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR 72
Query: 1294 XXXXXXXXXXXXKPADKVTVLAQYSVERYN 1323
VT++AQY E Y+
Sbjct: 73 NASHEQAAIALKNAGQTVTIIAQYKPEEYS 102
Score = 32.0 bits (71), Expect = 3.3, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 208 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 267
G++I I G A G L GD++LS+N + S + +AL + V I KP
Sbjct: 39 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 98
Query: 268 TSLGEHSPRVHRKSVNSS 285
E+S VNSS
Sbjct: 99 E---EYSRFEANSRVNSS 113
Score = 32.0 bits (71), Expect = 3.3, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 832 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 891
G++I I G A G L GD++LS+N + S + +AL + V I KP
Sbjct: 39 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 98
Query: 892 TSLGEHSPRVHRKSVNSS 909
E+S VNSS
Sbjct: 99 E---EYSRFEANSRVNSS 113
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 72/139 (51%), Gaps = 13/139 (9%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARSLVTTQLQLNNSYDH 825
+VND I+ VN +D V+ +E ++ +G+ + + RR+ A ++ +L +
Sbjct: 52 RVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKL-IKGPKGL 110
Query: 826 GLTLESG-----------LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGM 874
G ++ G +Y+ KI G A K+G L +GD++L++N+ ++ + + +
Sbjct: 111 GFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMH-EDAV 169
Query: 875 ALLSDSPDVLTITTLKPTS 893
A L ++ DV+ + KP++
Sbjct: 170 AALKNTYDVVYLKVAKPSN 188
Score = 51.2 bits (121), Expect = 5e-06, Method: Composition-based stats.
Identities = 45/198 (22%), Positives = 99/198 (50%), Gaps = 23/198 (11%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKG--SVTDGKLKKKEEVARIKKQCEDMNQEK 131
N LG + GG D+P +D SI+++ I+ G + DG+L+ + + + + D+ +
Sbjct: 12 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV--DVREVT 69
Query: 132 NTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVTNYLD 191
++A E LK+ + +R + +R + ++ + +K I + +
Sbjct: 70 HSAAVE--ALKE-AGSIVRLY--VMRRKPPAEKVME---------IKLIKGPKGLGFSIA 115
Query: 192 GLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMA 251
G + N + G ++ +Y+ KI G A K+G L +GD++L++N+ ++ + + +A
Sbjct: 116 G-GVGNQHIPG---DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMH-EDAVA 170
Query: 252 LLSDSPDVLTITTLKPTS 269
L ++ DV+ + KP++
Sbjct: 171 ALKNTYDVVYLKVAKPSN 188
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 72/139 (51%), Gaps = 13/139 (9%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARSLVTTQLQLNNSYDH 825
+VND I+ VN +D V+ +E ++ +G+ + + RR+ A ++ +L +
Sbjct: 55 RVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKL-IKGPKGL 113
Query: 826 GLTLESG-----------LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGM 874
G ++ G +Y+ KI G A K+G L +GD++L++N+ ++ + + +
Sbjct: 114 GFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMH-EDAV 172
Query: 875 ALLSDSPDVLTITTLKPTS 893
A L ++ DV+ + KP++
Sbjct: 173 AALKNTYDVVYLKVAKPSN 191
Score = 50.8 bits (120), Expect = 6e-06, Method: Composition-based stats.
Identities = 45/198 (22%), Positives = 99/198 (50%), Gaps = 23/198 (11%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKG--SVTDGKLKKKEEVARIKKQCEDMNQEK 131
N LG + GG D+P +D SI+++ I+ G + DG+L+ + + + + D+ +
Sbjct: 15 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV--DVREVT 72
Query: 132 NTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVTNYLD 191
++A E LK+ + +R + +R + ++ + +K I + +
Sbjct: 73 HSAAVE--ALKE-AGSIVRLY--VMRRKPPAEKVME---------IKLIKGPKGLGFSIA 118
Query: 192 GLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMA 251
G + N + G ++ +Y+ KI G A K+G L +GD++L++N+ ++ + + +A
Sbjct: 119 G-GVGNQHIPG---DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMH-EDAVA 173
Query: 252 LLSDSPDVLTITTLKPTS 269
L ++ DV+ + KP++
Sbjct: 174 ALKNTYDVVYLKVAKPSN 191
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 54.7 bits (130), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 72/139 (51%), Gaps = 13/139 (9%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARSLVTTQLQLNNSYDH 825
+VND I+ VN +D V+ +E ++ +G+ + + RR+ A ++ +L +
Sbjct: 62 RVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKL-IKGPKGL 120
Query: 826 GLTLESG-----------LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGM 874
G ++ G +Y+ KI G A K+G L +GD++L++N+ ++ + + +
Sbjct: 121 GFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMH-EDAV 179
Query: 875 ALLSDSPDVLTITTLKPTS 893
A L ++ DV+ + KP++
Sbjct: 180 AALKNTYDVVYLKVAKPSN 198
Score = 50.4 bits (119), Expect = 8e-06, Method: Composition-based stats.
Identities = 45/198 (22%), Positives = 99/198 (50%), Gaps = 23/198 (11%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKG--SVTDGKLKKKEEVARIKKQCEDMNQEK 131
N LG + GG D+P +D SI+++ I+ G + DG+L+ + + + + D+ +
Sbjct: 22 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV--DVREVT 79
Query: 132 NTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVTNYLD 191
++A E LK+ + +R + +R + ++ + +K I + +
Sbjct: 80 HSAAVE--ALKE-AGSIVRLY--VMRRKPPAEKVME---------IKLIKGPKGLGFSIA 125
Query: 192 GLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMA 251
G + N + G ++ +Y+ KI G A K+G L +GD++L++N+ ++ + + +A
Sbjct: 126 G-GVGNQHIPG---DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMH-EDAVA 180
Query: 252 LLSDSPDVLTITTLKPTS 269
L ++ DV+ + KP++
Sbjct: 181 ALKNTYDVVYLKVAKPSN 198
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 54.3 bits (129), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 1127 GELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRS 1185
G + V + LG I + GV V T+ LA + G LQ GD +L++ G N++
Sbjct: 14 GHVEEVELINDGSGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQG 73
Query: 1186 ATYQLAASVLRQCGNSITMLVQYSP 1210
T + A VLR CGNS+ MLV P
Sbjct: 74 MTSEQVAQVLRNCGNSVRMLVARDP 98
Score = 37.0 bits (84), Expect = 0.10, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 1248 SNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 1293
S LG +VGG G+ V ++ G L G L+TGD IL+ GT+++
Sbjct: 26 SGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQ 72
Score = 36.6 bits (83), Expect = 0.12, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMAL 252
SG+ + I PG LA ++G L GD +L I V G++S + L
Sbjct: 38 SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVL 83
Score = 36.6 bits (83), Expect = 0.12, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMAL 876
SG+ + I PG LA ++G L GD +L I V G++S + L
Sbjct: 38 SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVL 83
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 1149 DSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLV 1206
D G+F+S VSE A++ G++VGD+LLEV G+ ++ A + A LR G ++ M V
Sbjct: 32 DDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 89
Score = 35.4 bits (80), Expect = 0.25, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 1245 RKCSNLGISLVGGNAV--------GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLR 1293
R+ LGIS+ GG GI++ V AG+R GD++LE NG L+
Sbjct: 11 RQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQ 67
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 1149 DSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLV 1206
D G+F+S VSE A++ G++VGD+LLEV G+ ++ A + A LR G ++ M V
Sbjct: 44 DDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 101
Score = 35.8 bits (81), Expect = 0.19, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
Query: 1234 SGEPRFLMIET------RKCSNLGISLVGGNAV--------GIYVHSVQSGSLGYSAGLR 1279
SGEP + E R+ LGIS+ GG GI++ V AG+R
Sbjct: 6 SGEPARIEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVR 65
Query: 1280 TGDRILEYNGTDLR 1293
GD++LE NG L+
Sbjct: 66 VGDKLLEVNGVALQ 79
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase 1
Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase 1
Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 1128 ELRRVHIDKSVEPLGIQIQCLDSG--------GVFVSTVSEHSLASQVG-LQVGDQLLEV 1178
EL V ++K E LGI I + +G G+FV TV+E A + G +QV D L+EV
Sbjct: 80 ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 139
Query: 1179 CGINMRSATYQLAASVLRQCGNSITMLV 1206
G ++ T AASVLR + ++
Sbjct: 140 DGTSLVGVTQSFAASVLRNTKGRVRFMI 167
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase 1
Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase 1
Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 1128 ELRRVHIDKSVEPLGIQIQCLDSG--------GVFVSTVSEHSLASQVG-LQVGDQLLEV 1178
EL V ++K E LGI I + +G G+FV TV+E A + G +QV D L+EV
Sbjct: 80 ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 139
Query: 1179 CGINMRSATYQLAASVLRQCGNSITMLV 1206
G ++ T AASVLR + ++
Sbjct: 140 DGTSLVGVTQSFAASVLRNTKGRVRFMI 167
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 1128 ELRRVHIDKSVEPLGIQIQCLDSG--------GVFVSTVSEHSLASQVG-LQVGDQLLEV 1178
EL V ++K + LGI I + G G+FV TV+E A + G +QV DQ++EV
Sbjct: 4 ELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEV 63
Query: 1179 CGINMRSATYQLAASVLRQCGNSITMLV 1206
GI++ T AA+VLR ++ ++
Sbjct: 64 DGISLVGVTQNFAATVLRNTKGNVRFVI 91
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
++ +Y+ KI G A K+G L VGDR+L +NN +++ ++ E +A+L ++ +V+ +
Sbjct: 53 DNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTH-EEAVAILKNTSEVVYLKVG 111
Query: 266 KPTSL 270
KPT++
Sbjct: 112 KPTTI 116
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
++ +Y+ KI G A K+G L VGDR+L +NN +++ ++ E +A+L ++ +V+ +
Sbjct: 53 DNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTH-EEAVAILKNTSEVVYLKVG 111
Query: 890 KPTSL 894
KPT++
Sbjct: 112 KPTTI 116
Score = 33.5 bits (75), Expect = 0.94, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 75 EALGLELVGGRDDPFYPNDSSIYVSNIVKGSVT--DGKLKKKEEVARIKK-QCEDMNQEK 131
+ LG + GG + P D+SIYV+ I+ G DG+L+ + + + E++ E+
Sbjct: 35 KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEE 94
Query: 132 NTAL 135
A+
Sbjct: 95 AVAI 98
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 47.0 bits (110), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 1128 ELRRVHIDKSVEPLGIQIQCLDSG--------GVFVSTVSEHSLASQVG-LQVGDQLLEV 1178
EL V ++K + LGI I + G G+FV TV+E A + G +QV DQ++EV
Sbjct: 9 ELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEV 68
Query: 1179 CGINMRSATYQLAASVLRQCGNSITMLV 1206
GI++ T AA+VLR ++ ++
Sbjct: 69 DGISLVGVTQNFAATVLRNTKGNVRFVI 96
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
Query: 1132 VHIDKSVEPLGIQI------QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMR 1184
V + K+V+ LGI I + L+ G+FV ++++ S G +Q+GDQ++ V G N++
Sbjct: 8 VELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQ 67
Query: 1185 SATYQLAASVLRQCGNSITM 1204
T Q A VLR G ++ +
Sbjct: 68 GFTNQQAVEVLRHTGQTVLL 87
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 1141 LGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQC-G 1199
+G++++ +D+G +FV V +S AS VGL+ GDQ+L++ G N + A VL+Q G
Sbjct: 18 IGLRLKSIDNG-IFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFG 76
Query: 1200 NSITMLVQYSP 1210
ITM ++ P
Sbjct: 77 EKITMTIRDRP 87
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1233 GSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTD 1291
G+ +PR +++ + +G+ L + GI+V VQ+ S GLR GD++L+ NG +
Sbjct: 1 GAMDPREVILCKDQDGKIGLRLKSIDN-GIFVQLVQANSPASLVGLRFGDQVLQINGEN 58
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 1236 EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 1293
EPR +++ R + LG ++VGG + GI++ + +G +G LR GDRI+ N DLR
Sbjct: 7 EPRKVVLH-RGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLR 65
Query: 1294 XXXXXXXXXXXXKPADKVTVLAQYSVERYN 1323
VT++AQY E Y+
Sbjct: 66 AASHEQAAAALKNAGQAVTIVAQYRPEEYS 95
Score = 39.3 bits (90), Expect = 0.017, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 1128 ELRRVHIDKSVEPLGIQIQCLDSG-GVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRS 1185
E R+V + + LG I + G G+F+S + A G L+ GD+++ V +++R+
Sbjct: 7 EPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRA 66
Query: 1186 ATYQLAASVLRQCGNSITMLVQYSPDKY 1213
A+++ AA+ L+ G ++T++ QY P++Y
Sbjct: 67 ASHEQAAAALKNAGQAVTIVAQYRPEEY 94
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human Zo-1
Maguk Protein
Length = 124
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 1237 PRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRXXX 1296
P +++ RK ++G+ L GGN VGI+V V S GL GD+IL N D
Sbjct: 28 PSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNII 87
Query: 1297 XXXXX--XXXXKPADKVTVLAQYSVERYNEV 1325
++VT+LAQ + Y +
Sbjct: 88 REEAVLFLLDLPKGEEVTILAQKKKDVYRRI 118
Score = 37.0 bits (84), Expect = 0.094, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 1139 EPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQC 1198
+ +G+++ + G+FV+ V E S A++ GL+ GDQ+L V ++ + + A L
Sbjct: 39 DSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDL 98
Query: 1199 --GNSITMLVQYSPDKYHEL 1216
G +T+L Q D Y +
Sbjct: 99 PKGEEVTILAQKKKDVYRRI 118
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 1128 ELRRVHIDKSVEPLGIQIQCLDSG--------GVFVSTVSEHSLASQVG-LQVGDQLLEV 1178
EL V ++K E LGI I + +G G+FV TV+E A + G +QV D L+EV
Sbjct: 4 ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 63
Query: 1179 CGINMRSATYQLAASVLRQCGNSITMLV 1206
G ++ T AASVLR + ++
Sbjct: 64 DGTSLVGVTQSFAASVLRNTKGRVRFMI 91
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase 1
Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase 1
Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 1128 ELRRVHIDKSVEPLGIQIQCLDSG--------GVFVSTVSEHSLASQVG-LQVGDQLLEV 1178
EL V ++K + LGI I + G G+FV TV+E A + G +QV DQ++EV
Sbjct: 80 ELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEV 139
Query: 1179 CGINMRSATYQLAASVLRQCGNSITMLV 1206
GI++ T AA+VLR ++ ++
Sbjct: 140 DGISLVGVTQNFAATVLRNTKGNVRFVI 167
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 44.7 bits (104), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
++ +Y+ KI G A K+G L +GD++L++NN ++ ++ E + L ++ D + +
Sbjct: 40 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTH-EEAVTALKNTSDFVYLKVA 98
Query: 266 KPTSL 270
KPTS+
Sbjct: 99 KPTSM 103
Score = 44.7 bits (104), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
++ +Y+ KI G A K+G L +GD++L++NN ++ ++ E + L ++ D + +
Sbjct: 40 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTH-EEAVTALKNTSDFVYLKVA 98
Query: 890 KPTSL 894
KPTS+
Sbjct: 99 KPTSM 103
Score = 39.3 bits (90), Expect = 0.018, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 75 EALGLELVGGRDDPFYPNDSSIYVSNIVKGSVT--DGKLKKKEEVARIKKQC--EDMNQE 130
+ LG + GG + P D+SIYV+ I++G DGKL+ +++ + C E ++E
Sbjct: 22 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEE 81
Query: 131 KNTALR 136
TAL+
Sbjct: 82 AVTALK 87
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 1152 GVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQ 1207
G+F+ V E S A + G L+ GD+++EV G+++R A+++ A +R+ GN + +VQ
Sbjct: 60 GIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 116
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 1236 EPRFLMIETRKCSNLGISLVGGNAVG-----------IYV-HSVQSGSLGYSAGLRTGDR 1283
+PR + + +LGIS+VGG +G I++ H ++ G + L+ GDR
Sbjct: 24 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 83
Query: 1284 ILEYNGTDLRXXXXXXXXXXXXKPADKVTVLAQ 1316
I+E +G DLR K + V + Q
Sbjct: 84 IVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 116
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 44.3 bits (103), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+VNDCI+RVN +D S VS +E ++ +G+ + +RRRR
Sbjct: 59 RVNDCILRVNEVDVSEVSHSKAVEALKEAGSIVRLYVRRRR 99
Score = 36.2 bits (82), Expect = 0.16, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKG--SVTDGKLKKKEEVARIKK 122
N LG + GG D+P +D I+++ I+ G + DG+L+ + + R+ +
Sbjct: 19 NSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNE 69
Score = 35.4 bits (80), Expect = 0.28, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMAL 252
+ G++I KI PG AA++G L V D +L +N V +S ++ AL
Sbjct: 38 DPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHSKAVEAL 84
Score = 35.4 bits (80), Expect = 0.28, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMAL 876
+ G++I KI PG AA++G L V D +L +N V +S ++ AL
Sbjct: 38 DPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHSKAVEAL 84
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 34/45 (75%)
Query: 1152 GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLR 1196
G+F+S V SL+++VGL++GDQ++EV G++ + ++ A +VL+
Sbjct: 28 GIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLK 72
Score = 36.6 bits (83), Expect = 0.11, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 1250 LGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 1292
LG S+ G GI++ V+ GSL GL GD+I+E NG D
Sbjct: 15 LGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDF 59
Score = 31.6 bits (70), Expect = 3.4, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 195 LNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLS 254
L S G + G++I + PGSL+A+ G L +GD+++ +N L +E + +L
Sbjct: 15 LGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDH-KEAVNVLK 72
Query: 255 DSPDVLTITTL 265
S LTI+ +
Sbjct: 73 SSRS-LTISIV 82
Score = 31.6 bits (70), Expect = 3.4, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 819 LNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLS 878
L S G + G++I + PGSL+A+ G L +GD+++ +N L +E + +L
Sbjct: 15 LGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDH-KEAVNVLK 72
Query: 879 DSPDVLTITTL 889
S LTI+ +
Sbjct: 73 SSRS-LTISIV 82
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2 Domain
(Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 1121 SHKPHPGELRRVHIDKSVEPLGIQIQCL----------DSGGVFVSTVSEHSLASQVG-L 1169
S P PG++ V + K+ LGI + L GG++V V A G +
Sbjct: 2 SSPPKPGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRI 61
Query: 1170 QVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQ 1207
GD++L V G+++ AT++ A LR G + +L++
Sbjct: 62 HKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLE 99
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 183 AMAVTNYLDGLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDG 242
++VT D +N S HG G+Y+ + P A +G + GDRVL++N +++G
Sbjct: 23 GISVTVLFDKGGVNTSVRHG-----GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 77
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 819 LNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDG 866
+N S HG G+Y+ + P A +G + GDRVL++N +++G
Sbjct: 35 VNTSVRHG-----GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 77
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
++ +YI KI G A K+G L +GDR+L++NN + + E +A L ++ D++ +
Sbjct: 32 DNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRH-EEAVASLKNTSDMVYLKVA 90
Query: 266 KPTS 269
KP S
Sbjct: 91 KPGS 94
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
++ +YI KI G A K+G L +GDR+L++NN + + E +A L ++ D++ +
Sbjct: 32 DNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRH-EEAVASLKNTSDMVYLKVA 90
Query: 890 KPTS 893
KP S
Sbjct: 91 KPGS 94
Score = 33.9 bits (76), Expect = 0.81, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 63 VLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSVT--DGKLKKKEEVARI 120
++++NL L + LG + GG + P D+SIY++ I++G DG+L+ + + +
Sbjct: 4 IMEVNL--LKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAV 61
Query: 121 KK-QCEDMNQEKNTA 134
+D+ E+ A
Sbjct: 62 NNTNLQDVRHEEAVA 76
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 43.9 bits (102), Expect = 9e-04, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1141 LGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQC-G 1199
+G++++ +D+G +FV V +S AS VGL+ GDQ+L++ G N + A VL+Q G
Sbjct: 18 IGLRLKSIDNG-IFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFG 76
Query: 1200 NSITMLVQYSP 1210
IT ++ P
Sbjct: 77 EKITXTIRDRP 87
Score = 33.5 bits (75), Expect = 1.0, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1233 GSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTD 1291
G+ +PR +++ + +G+ L + GI+V VQ+ S GLR GD++L+ NG +
Sbjct: 1 GAXDPREVILCKDQDGKIGLRLKSIDN-GIFVQLVQANSPASLVGLRFGDQVLQINGEN 58
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 1241 MIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRXXXXXXX 1300
+++ RK ++G+ L GGN VGI+V V S GL GD+IL N D
Sbjct: 7 LVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEA 66
Query: 1301 X--XXXXKPADKVTVLAQYSVERYNEV 1325
++VT+LAQ + Y +
Sbjct: 67 VLFLLDLPKGEEVTILAQKKKDVYRRI 93
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 1126 PGELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRS 1185
PG ++ V K + +G+++ + G+FV+ V E S A++ GL+ GDQ+L V ++ +
Sbjct: 2 PGSMKLVKFRKG-DSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTN 60
Query: 1186 ATYQLAASVLRQC--GNSITMLVQYSPDKYHEL 1216
+ A L G +T+L Q D Y +
Sbjct: 61 IIREEAVLFLLDLPKGEEVTILAQKKKDVYRRI 93
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz (Mupp-1)
Length = 103
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 1152 GVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQ 1207
G+F+ V E S A + G L+ GD+++EV G+++R A+++ A +R+ GN + +VQ
Sbjct: 40 GIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 96
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 1234 SGEPRFLMIETRKCSNLGISLVGGNAVG-----------IYV-HSVQSGSLGYSAGLRTG 1281
S +PR + + +LGIS+VGG +G I++ H ++ G + L+ G
Sbjct: 2 SMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPG 61
Query: 1282 DRILEYNGTDLRXXXXXXXXXXXXKPADKVTVLAQ 1316
DRI+E +G DLR K + V + Q
Sbjct: 62 DRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 96
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
++ +Y+ KI G A K+G L +GD++L++NN ++ ++ E + L ++ D + +
Sbjct: 37 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTH-EEAVTALKNTSDFVYLKVA 95
Query: 266 KPTS 269
KPTS
Sbjct: 96 KPTS 99
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
++ +Y+ KI G A K+G L +GD++L++NN ++ ++ E + L ++ D + +
Sbjct: 37 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTH-EEAVTALKNTSDFVYLKVA 95
Query: 890 KPTS 893
KPTS
Sbjct: 96 KPTS 99
Score = 36.2 bits (82), Expect = 0.14, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 75 EALGLELVGGRDDPFYPNDSSIYVSNIVKGSVT--DGKLKKKEEVARIKKQC--EDMNQE 130
+ LG + GG + +P D+SIYV+ I++G DGKL+ +++ + E ++E
Sbjct: 19 KGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEE 78
Query: 131 KNTALR 136
TAL+
Sbjct: 79 AVTALK 84
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase
Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2
Peptide
Length = 96
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 1124 PHPGELRRVHIDKSVEPLGIQIQ-----CLDSGGVFVSTVSEHSLASQVG-LQVGDQLLE 1177
P PG++ V + K+ LGI + + GG++V V A G + GD++L
Sbjct: 1 PKPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLA 60
Query: 1178 VCGINMRSATYQLAASVLRQCGNSITMLVQ 1207
V G+++ AT++ A LR G + +L++
Sbjct: 61 VNGVSLEGATHKQAVETLRNTGQVVHLLLE 90
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 195 LNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDG 242
+N S HG G+Y+ + P A +G + GDRVL++N +++G
Sbjct: 26 VNTSVRHG-----GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 68
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 819 LNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDG 866
+N S HG G+Y+ + P A +G + GDRVL++N +++G
Sbjct: 26 VNTSVRHG-----GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 68
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 34/45 (75%)
Query: 1152 GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLR 1196
G+F+S V SL+++VGL++GDQ++EV G++ + ++ A +VL+
Sbjct: 42 GIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLK 86
Score = 35.8 bits (81), Expect = 0.19, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 1250 LGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 1292
LG S+ G GI++ V+ GSL GL GD+I+E NG D
Sbjct: 29 LGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDF 73
Score = 30.8 bits (68), Expect = 6.1, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 195 LNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLS 254
L S G + G++I + PGSL+A+ G L +GD+++ +N L +E + +L
Sbjct: 29 LGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDH-KEAVNVLK 86
Query: 255 DSPDVLTITTL 265
S LTI+ +
Sbjct: 87 SSRS-LTISIV 96
Score = 30.8 bits (68), Expect = 6.1, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 819 LNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLS 878
L S G + G++I + PGSL+A+ G L +GD+++ +N L +E + +L
Sbjct: 29 LGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDH-KEAVNVLK 86
Query: 879 DSPDVLTITTL 889
S LTI+ +
Sbjct: 87 SSRS-LTISIV 96
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 1152 GVFVSTVSEHSLASQV-GLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQ 1207
G+F+ V E S A + L+ GD++LEV G+++++A++ A ++ GN + +VQ
Sbjct: 51 GIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQ 107
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 1235 GEPRFLMIETRKCSNLGISLVGGNAV-----------GIYVHSV-QSGSLGYSAGLRTGD 1282
G PR + I +LGIS+VGG V GI++ V + G + L+TGD
Sbjct: 14 GPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGD 73
Query: 1283 RILEYNGTDLRXXXXXXXXXXXXKPADKVTVLAQ 1316
+ILE +G DL+ + V + Q
Sbjct: 74 KILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQ 107
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
++ +Y+ KI G A K+G L +GD++L++NN ++ ++ E + L ++ D + +
Sbjct: 38 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTH-EEAVTALKNTSDFVYLKVA 96
Query: 266 KPTS 269
KPTS
Sbjct: 97 KPTS 100
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
++ +Y+ KI G A K+G L +GD++L++NN ++ ++ E + L ++ D + +
Sbjct: 38 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTH-EEAVTALKNTSDFVYLKVA 96
Query: 890 KPTS 893
KPTS
Sbjct: 97 KPTS 100
Score = 38.5 bits (88), Expect = 0.031, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 75 EALGLELVGGRDDPFYPNDSSIYVSNIVKGSVT--DGKLKKKEEVARIKKQC--EDMNQE 130
+ LG + GG + P D+SIYV+ I++G DGKL+ +++ + C E ++E
Sbjct: 20 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEE 79
Query: 131 KNTALR 136
TAL+
Sbjct: 80 AVTALK 85
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
++ +Y+ KI G A K+G L +GD++L++N+ +++ ++ E + L ++ D + +
Sbjct: 32 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTH-EEAVTALKNTSDFVYLKVA 90
Query: 266 KPTSL 270
KPTS+
Sbjct: 91 KPTSM 95
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
++ +Y+ KI G A K+G L +GD++L++N+ +++ ++ E + L ++ D + +
Sbjct: 32 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTH-EEAVTALKNTSDFVYLKVA 90
Query: 890 KPTSL 894
KPTS+
Sbjct: 91 KPTSM 95
Score = 34.7 bits (78), Expect = 0.43, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 75 EALGLELVGGRDDPFYPNDSSIYVSNIVKGSVT--DGKLKKKEEVARIKKQC--EDMNQE 130
+ LG + GG + P D+SIYV+ I++G DGKL+ +++ + E ++E
Sbjct: 14 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEE 73
Query: 131 KNTALR 136
TAL+
Sbjct: 74 AVTALK 79
Score = 30.4 bits (67), Expect = 9.7, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 1153 VFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211
++V+ + E A + G LQ+GD+LL V +++ T++ A + L+ + + + V
Sbjct: 35 IYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTS 94
Query: 1212 KY 1213
Y
Sbjct: 95 MY 96
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTI 262
+ G++I K+SP A ++G L VG R+L +N +++ GL+ E + LL D LT+
Sbjct: 43 DEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHG-EAVQLLRSVGDTLTV 98
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTI 886
+ G++I K+SP A ++G L VG R+L +N +++ GL+ E + LL D LT+
Sbjct: 43 DEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHG-EAVQLLRSVGDTLTV 98
Score = 35.4 bits (80), Expect = 0.25, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 13/91 (14%)
Query: 1129 LRRVHIDKSV-EPLGIQIQCLDSG-----------GVFVSTVSEHSLASQVG-LQVGDQL 1175
LR + I K+ E LGI I+ G G+F+S VS A + G L+VG +L
Sbjct: 10 LRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRL 69
Query: 1176 LEVCGINMRSATYQLAASVLRQCGNSITMLV 1206
LEV ++ T+ A +LR G+++T+LV
Sbjct: 70 LEVNQQSLLGLTHGEAVQLLRSVGDTLTVLV 100
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
++ +Y+ KI G A K+G L +GD++L++N+ ++ ++ E + L ++ D + +
Sbjct: 32 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTH-EEAVTALKNTSDFVYLKVA 90
Query: 266 KPTSL 270
KPTS+
Sbjct: 91 KPTSM 95
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
++ +Y+ KI G A K+G L +GD++L++N+ ++ ++ E + L ++ D + +
Sbjct: 32 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTH-EEAVTALKNTSDFVYLKVA 90
Query: 890 KPTSL 894
KPTS+
Sbjct: 91 KPTSM 95
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 75 EALGLELVGGRDDPFYPNDSSIYVSNIVKGSVT--DGKLKKKEEVARIKKQC--EDMNQE 130
+ LG + GG + P D+SIYV+ I++G DGKL+ +++ + C E ++E
Sbjct: 14 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEE 73
Query: 131 KNTALR 136
TAL+
Sbjct: 74 AVTALK 79
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
++ +Y+ KI G A K+G L +GD++L++NN ++ ++ E + L ++ D + +
Sbjct: 28 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTH-EEAVTALKNTSDFVYLKVA 86
Query: 266 KPT 268
KPT
Sbjct: 87 KPT 89
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
++ +Y+ KI G A K+G L +GD++L++NN ++ ++ E + L ++ D + +
Sbjct: 28 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTH-EEAVTALKNTSDFVYLKVA 86
Query: 890 KPT 892
KPT
Sbjct: 87 KPT 89
Score = 39.3 bits (90), Expect = 0.021, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 75 EALGLELVGGRDDPFYPNDSSIYVSNIVKGSVT--DGKLKKKEEVARIKKQC--EDMNQE 130
+ LG + GG + P D+SIYV+ I++G DGKL+ +++ + C E ++E
Sbjct: 10 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEE 69
Query: 131 KNTALR 136
TAL+
Sbjct: 70 AVTALK 75
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human Kiaa1526
Protein
Length = 101
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 1234 SGEPRFLMIETRKC-SNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYN 1288
SGE R + + K LG S+ GG+ VGIYV V+ GSL GLR GD+IL N
Sbjct: 6 SGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVN 63
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 192 GLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMA 251
G + +HG+ G+Y+ + PGSLA KEG L VGD++L +N++++ ++ A A
Sbjct: 24 GFSIRGGSEHGV----GIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKA 78
Query: 252 LLSDSPDVLTI 262
L VL++
Sbjct: 79 LKGSKKLVLSV 89
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 793 SSGTSALMVIRRRRVGARSLVTTQLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAV 852
SSG L+ +RR A++ + +HG+ G+Y+ + PGSLA KEG L V
Sbjct: 5 SSGEVRLVSLRR----AKAHEGLGFSIRGGSEHGV----GIYVSLVEPGSLAEKEG-LRV 55
Query: 853 GDRVLSINNRTVDGLSSAREGMALLSDSPDVLTI 886
GD++L +N++++ ++ A AL VL++
Sbjct: 56 GDQILRVNDKSLARVTHAEAVKALKGSKKLVLSV 89
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 1127 GELRRVHI--DKSVEPLGIQIQCLDSGGV--FVSTVSEHSLASQVGLQVGDQLLEVCGIN 1182
GE+R V + K+ E LG I+ GV +VS V SLA + GL+VGDQ+L V +
Sbjct: 7 GEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKS 66
Query: 1183 MRSATYQLAASVLRQCGNSITMLVQYSPDK 1212
+ T+ A L+ G+ +L YS +
Sbjct: 67 LARVTHAEAVKALK--GSKKLVLSVYSAGR 94
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
++ +Y+ KI G A K+G L +GD++L++N+ ++ ++ E + L ++ D + +
Sbjct: 32 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTH-EEAVTALKNTSDFVYLKVA 90
Query: 266 KPTSL 270
KPTS+
Sbjct: 91 KPTSM 95
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
++ +Y+ KI G A K+G L +GD++L++N+ ++ ++ E + L ++ D + +
Sbjct: 32 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTH-EEAVTALKNTSDFVYLKVA 90
Query: 890 KPTSL 894
KPTS+
Sbjct: 91 KPTSM 95
Score = 34.3 bits (77), Expect = 0.60, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 75 EALGLELVGGRDDPFYPNDSSIYVSNIVKGSVT--DGKLKKKEEVARIKKQC--EDMNQE 130
+ LG + GG + P D+SIYV+ I++G DGKL+ +++ + E ++E
Sbjct: 14 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEE 73
Query: 131 KNTALR 136
TAL+
Sbjct: 74 AVTALK 79
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 208 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAR 247
GLYI + PGS AA +G L++GDR+L +N ++ GL R
Sbjct: 37 GLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLR 76
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 832 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAR 871
GLYI + PGS AA +G L++GDR+L +N ++ GL R
Sbjct: 37 GLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLR 76
Score = 35.4 bits (80), Expect = 0.30, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 1233 GSGEPRFLMIETRKCSNLGISLVGG-----NAVGIYVHSVQSGSLGYSAG-LRTGDRILE 1286
GS F + R S LG+ L+ G A G+Y+ ++ GS + G L GDRILE
Sbjct: 4 GSSGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILE 63
Query: 1287 YNGTDL 1292
NG+ L
Sbjct: 64 VNGSSL 69
Score = 31.2 bits (69), Expect = 4.9, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 1148 LDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLV 1206
L + G+++ T+ S A+ G L +GD++LEV G ++ Y A ++R G + LV
Sbjct: 33 LGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLV 92
Query: 1207 QYS 1209
S
Sbjct: 93 AKS 95
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 1236 EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 1293
EPR +++ R + LG ++VGG + GI++ + +G +G LR GDRI+ N DLR
Sbjct: 4 EPRKVVLH-RGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLR 62
Query: 1294 XXXXXXXXXXXXKPADKVTVLAQ 1316
VT++AQ
Sbjct: 63 AASHEQAAAALKNAGQAVTIVAQ 85
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 201 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 260
HGL G++I ++ PG LA G LAV D VL +N V G S + ++++S ++
Sbjct: 59 HGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNL- 117
Query: 261 TITTLKPTS 269
I T++P +
Sbjct: 118 -IITVRPAN 125
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 825 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 884
HGL G++I ++ PG LA G LAV D VL +N V G S + ++++S ++
Sbjct: 59 HGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNL- 117
Query: 885 TITTLKPTS 893
I T++P +
Sbjct: 118 -IITVRPAN 125
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 1169 LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQY 1208
++ GD+LL V GI + T+ A S+L+QCG T+L++Y
Sbjct: 154 IKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEY 193
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
++ +Y+ KI G A K+G L +GD++L++NN ++ ++ E + L ++ D + +
Sbjct: 31 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTH-EEAVTALKNTSDFVYLKVA 89
Query: 266 KPTS 269
KP S
Sbjct: 90 KPGS 93
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
++ +Y+ KI G A K+G L +GD++L++NN ++ ++ E + L ++ D + +
Sbjct: 31 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTH-EEAVTALKNTSDFVYLKVA 89
Query: 890 KPTS 893
KP S
Sbjct: 90 KPGS 93
Score = 36.6 bits (83), Expect = 0.12, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKGSVT--DGKLKKKEEVARIKKQC--EDMNQ 129
++ LG + GG + +P D+SIYV+ I++G DGKL+ +++ + E ++
Sbjct: 12 SKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHE 71
Query: 130 EKNTALR 136
E TAL+
Sbjct: 72 EAVTALK 78
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase
Hptp1e Complexed With A Peptide
Length = 96
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 1126 PGELRRVHIDKSVEPLGIQIQ-----CLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVC 1179
PG++ V + K+ LGI + + GG++V V A G + GD++L V
Sbjct: 3 PGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVN 62
Query: 1180 GINMRSATYQLAASVLRQCGNSITMLVQ 1207
G+++ AT++ A LR G + +L++
Sbjct: 63 GVSLEGATHKQAVETLRNTGQVVHLLLE 90
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 195 LNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDG 242
+N S HG G+Y+ + P A +G + GDRVL++N +++G
Sbjct: 26 VNTSVRHG-----GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 68
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 819 LNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDG 866
+N S HG G+Y+ + P A +G + GDRVL++N +++G
Sbjct: 26 VNTSVRHG-----GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 68
>pdb|2H2C|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Derived
Ligand (Wrrttwv)
Length = 107
Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 72 SPNEALGLELVGGRDDP-FYPNDSSIYVSNIVKGSVTDGKLKKKEEVARIKKQCEDMNQE 130
+P G+ + GGRD+P F ++SI +S+++KG +G+L++ + VA + D N E
Sbjct: 16 APGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEGQLQENDRVAMVNGVSMD-NVE 74
Query: 131 KNTALRERNGLKQQCTAAIRQ 151
A+++ + IR+
Sbjct: 75 HAFAVQQLRKSGKNAKITIRR 95
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 40.4 bits (93), Expect = 0.009, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 192 GLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINN-RTVDGLSSAREGM 250
GLQL TL S +C I P S A + G L VGDRVLSIN T DG + E
Sbjct: 30 GLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDG--TMEEAN 87
Query: 251 ALLSDS 256
LL D+
Sbjct: 88 QLLRDA 93
Score = 38.1 bits (87), Expect = 0.042, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 817 LQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINN-RTVDGLSSAREGMA 875
LQL TL S +C I P S A + G L VGDRVLSIN T DG + E
Sbjct: 31 LQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDG--TMEEANQ 88
Query: 876 LLSDS 880
LL D+
Sbjct: 89 LLRDA 93
>pdb|2H2B|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-derived
Ligand (wrrttyl)
Length = 107
Score = 40.4 bits (93), Expect = 0.009, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 72 SPNEALGLELVGGRDDP-FYPNDSSIYVSNIVKGSVTDGKLKKKEEVARIKKQCEDMNQE 130
+P G+ + GGRD+P F ++SI +S+++KG +G+L++ + VA + D N E
Sbjct: 16 APGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEGQLQENDRVAMVNGVSMD-NVE 74
Query: 131 KNTALRERNGLKQQCTAAIRQ 151
A+++ + IR+
Sbjct: 75 HAFAVQQLRKSGKNAKITIRR 95
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 40.0 bits (92), Expect = 0.012, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
++ +Y+ I G A K+G L +GD++L++N+ ++ ++ E + L ++ D + +
Sbjct: 32 DNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTH-EEAVTALKNTSDFVYLKVA 90
Query: 266 KPTSL 270
KPTS+
Sbjct: 91 KPTSM 95
Score = 40.0 bits (92), Expect = 0.012, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
++ +Y+ I G A K+G L +GD++L++N+ ++ ++ E + L ++ D + +
Sbjct: 32 DNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTH-EEAVTALKNTSDFVYLKVA 90
Query: 890 KPTSL 894
KPTS+
Sbjct: 91 KPTSM 95
Score = 35.0 bits (79), Expect = 0.37, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 75 EALGLELVGGRDDPFYPNDSSIYVSNIVKGSVT--DGKLKKKEEVARIKKQC--EDMNQE 130
+ LG + GG + P D+SIYV++IV+G DGKL+ +++ + E ++E
Sbjct: 14 KGLGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEE 73
Query: 131 KNTALR 136
TAL+
Sbjct: 74 AVTALK 79
Score = 31.2 bits (69), Expect = 5.5, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 1153 VFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211
++V+++ E A + G LQ+GD+LL V + + T++ A + L+ + + + V
Sbjct: 35 IYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNTSDFVYLKVAKPTS 94
Query: 1212 KY 1213
Y
Sbjct: 95 MY 96
>pdb|2RRM|A Chain A, Interplay Between Phosphatidyl-Inositol-Phosphates And
Claudins Upon Binding To The 1st Pdz Domain Of Zonula
Occludens 1
Length = 100
Score = 40.0 bits (92), Expect = 0.012, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 72 SPNEALGLELVGGRDDP-FYPNDSSIYVSNIVKGSVTDGKLKKKEEVARIKKQCEDMNQE 130
+P G+ + GGRD+P F ++SI +S+++KG +G+L++ + VA + D N E
Sbjct: 19 APGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEGQLQENDRVAMVNGVSMD-NVE 77
Query: 131 KNTALRERNGLKQQCTAAIRQ 151
A+++ + IR+
Sbjct: 78 HAFAVQQLRKSGKNAKITIRR 98
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 1153 VFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQY 1208
V +++V A + G ++ GD+LL V GI + T+ A S+L+QCG +L++Y
Sbjct: 34 VVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLIEY 90
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 209 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALL 253
+ I + PG A +EG++ GDR+LS++ + G + A E M++L
Sbjct: 34 VVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHA-EAMSIL 77
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 833 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALL 877
+ I + PG A +EG++ GDR+LS++ + G + A E M++L
Sbjct: 34 VVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHA-EAMSIL 77
>pdb|2H3M|A Chain A, Crystal Structure Of Zo-1 Pdz1
Length = 97
Score = 39.7 bits (91), Expect = 0.013, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 72 SPNEALGLELVGGRDDP-FYPNDSSIYVSNIVKGSVTDGKLKKKEEVARIKKQCEDMNQE 130
+P G+ + GGRD+P F ++SI +S+++KG +G+L++ + VA + D N E
Sbjct: 16 APGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEGQLQENDRVAMVNGVSMD-NVE 74
Query: 131 KNTALRERNGLKQQCTAAIRQ 151
A+++ + IR+
Sbjct: 75 HAFAVQQLRKSGKNAKITIRR 95
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 208 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLS 254
G+YI +I P S+AAK+G + GDR++ IN V + E +ALL+
Sbjct: 49 GIYISEIDPNSIAAKDGRIREGDRIIQINGIEV---QNREEAVALLT 92
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 832 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLS 878
G+YI +I P S+AAK+G + GDR++ IN V + E +ALL+
Sbjct: 49 GIYISEIDPNSIAAKDGRIREGDRIIQINGIEV---QNREEAVALLT 92
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 39.7 bits (91), Expect = 0.016, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 1152 GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVL 1195
G+FVS V E S A + GL VGD++ EV G+++ S T A VL
Sbjct: 37 GIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVL 80
Score = 38.5 bits (88), Expect = 0.034, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 1242 IETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 1292
+E LG S+ GG+ +GI+V V+ GS AGL GD+I E NG L
Sbjct: 16 VEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSL 68
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 39.7 bits (91), Expect = 0.016, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKG--SVTDGKLKKKEEVARIKK-QCEDMNQE 130
N LG + GG D+P +DSSI+++ I+ G + DG+L+ + + R+ + D+
Sbjct: 21 NSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHS 80
Query: 131 KNT-ALRE 137
K AL+E
Sbjct: 81 KAVEALKE 88
Score = 38.5 bits (88), Expect = 0.029, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+VNDCI+RVN +D +V+ +E ++ +G+ + ++RR+
Sbjct: 61 RVNDCILRVNEVDVRDVTHSKAVEALKEAGSIVRLYVKRRK 101
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 39.3 bits (90), Expect = 0.016, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKG--SVTDGKLKKKEEVARIKK-QCEDMNQE 130
N LG + GG D+P +DSSI+++ I+ G + DG+L+ + + R+ + D+
Sbjct: 11 NSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHS 70
Query: 131 KNT-ALRE 137
K AL+E
Sbjct: 71 KAVEALKE 78
Score = 37.7 bits (86), Expect = 0.056, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+VNDCI+RVN D +V+ +E ++ +G+ + ++RR+
Sbjct: 51 RVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRK 91
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With Beta2-
Ar And Pdgfr
Length = 91
Score = 39.3 bits (90), Expect = 0.017, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 1115 LPDYCCSHKPHPGELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQ 1174
LP CC K G +H +K LG I+ ++ G S A + GL GD+
Sbjct: 3 LPRLCCLEKGPNGYGFHLHGEKG--KLGQYIRLVEPG----------SPAEKAGLLAGDR 50
Query: 1175 LLEVCGINMRSATYQLAASVLRQCGNSITMLV 1206
L+EV G N+ T+Q S +R N++ +LV
Sbjct: 51 LVEVNGENVEKETHQQVVSRIRAALNAVRLLV 82
Score = 31.6 bits (70), Expect = 3.9, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 201 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVD 241
HG + G YI + PGS A K G LA GDR++ +N V+
Sbjct: 21 HGEKGKLGQYIRLVEPGSPAEKAGLLA-GDRLVEVNGENVE 60
Score = 31.6 bits (70), Expect = 3.9, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 825 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVD 865
HG + G YI + PGS A K G LA GDR++ +N V+
Sbjct: 21 HGEKGKLGQYIRLVEPGSPAEKAGLLA-GDRLVEVNGENVE 60
Score = 31.6 bits (70), Expect = 4.3, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 1260 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 1292
+G Y+ V+ GS AGL GDR++E NG ++
Sbjct: 27 LGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENV 59
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 1151 GGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQ 1197
G + + V E A + G L GDQ+LEV GI++R AT+ A +VLRQ
Sbjct: 30 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQ 77
Score = 34.7 bits (78), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 1248 SNLGISLVGGNAV---GIYVHSV-QSGSLGYSAGLRTGDRILEYNGTDLR 1293
+ LG+S+VGG+ I +H V + G+ L GD+ILE NG DLR
Sbjct: 15 TGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLR 64
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 39.3 bits (90), Expect = 0.019, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
++ +Y+ KI G A K+G L +GD++L++N+ ++ + + +A L ++ DV+ +
Sbjct: 32 DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMH-EDAVAALKNTYDVVYLKVA 90
Query: 266 KPTS 269
KP++
Sbjct: 91 KPSN 94
Score = 39.3 bits (90), Expect = 0.019, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
++ +Y+ KI G A K+G L +GD++L++N+ ++ + + +A L ++ DV+ +
Sbjct: 32 DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMH-EDAVAALKNTYDVVYLKVA 90
Query: 890 KPTS 893
KP++
Sbjct: 91 KPSN 94
Score = 33.9 bits (76), Expect = 0.79, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 75 EALGLELVGGRDDPFYPNDSSIYVSNIVKGSVT--DGKLKKKEEVARIKK-QCEDMNQEK 131
+ LG + GG + P D+SIYV+ I++G DG+L+ +++ + ED+ E
Sbjct: 14 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHED 73
Query: 132 NTA 134
A
Sbjct: 74 AVA 76
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 1149 DSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLV 1206
D+ G + + E S A + GL GD++L + G+ + + ++R+ GNS+T+LV
Sbjct: 24 DTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV 81
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 39.3 bits (90), Expect = 0.020, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1151 GGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQ 1207
G+FVS ++E A + G LQVGD++L + G+++ A + A S+L +I +L++
Sbjct: 38 AGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLE 95
Score = 37.7 bits (86), Expect = 0.059, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 9/57 (15%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSIN---------NRTVDGLSSAREGMALL 253
++G+++ +I+ G A + G+L VGDRVLSIN + V L++A +ALL
Sbjct: 37 DAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALL 93
Score = 37.7 bits (86), Expect = 0.059, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 9/57 (15%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSIN---------NRTVDGLSSAREGMALL 877
++G+++ +I+ G A + G+L VGDRVLSIN + V L++A +ALL
Sbjct: 37 DAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALL 93
Score = 33.5 bits (75), Expect = 0.90, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 1245 RKCSNLGISLVGGNA--------VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 1292
R LG S+ GG GI+V + G + AG L+ GDR+L NG D+
Sbjct: 15 RSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDV 71
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 39.3 bits (90), Expect = 0.021, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 1126 PGELRRVHIDKSVEPLGIQIQ-----CLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVC 1179
PG+ V + K+ LGI + + GG++V + A G + GD++L V
Sbjct: 2 PGDTFEVELAKTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVN 61
Query: 1180 GINMRSATYQLAASVLRQCGNSITMLVQ 1207
G+++ AT++ A LR G + +L++
Sbjct: 62 GVSLEGATHKQAVETLRNTGQVVHLLLE 89
Score = 33.5 bits (75), Expect = 1.0, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 195 LNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLS 254
+N S HG G+Y+ I P A +G + GDRVL++N +++G ++ ++ + L
Sbjct: 25 VNTSVRHG-----GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG-ATHKQAVETLR 78
Query: 255 DSPDVL 260
++ V+
Sbjct: 79 NTGQVV 84
Score = 33.5 bits (75), Expect = 1.0, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 819 LNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLS 878
+N S HG G+Y+ I P A +G + GDRVL++N +++G ++ ++ + L
Sbjct: 25 VNTSVRHG-----GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG-ATHKQAVETLR 78
Query: 879 DSPDVL 884
++ V+
Sbjct: 79 NTGQVV 84
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand From
The Apc Protein
Length = 102
Score = 39.3 bits (90), Expect = 0.021, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 1126 PGELRRVHIDKSVEPLGIQIQ-----CLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVC 1179
PG+ V + K+ LGI + + GG++V + A G + GD++L V
Sbjct: 10 PGDTFEVELAKTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVN 69
Query: 1180 GINMRSATYQLAASVLRQCGNSITMLVQ 1207
G+++ AT++ A LR G + +L++
Sbjct: 70 GVSLEGATHKQAVETLRNTGQVVHLLLE 97
Score = 33.5 bits (75), Expect = 1.0, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 195 LNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLS 254
+N S HG G+Y+ I P A +G + GDRVL++N +++G ++ ++ + L
Sbjct: 33 VNTSVRHG-----GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG-ATHKQAVETLR 86
Query: 255 DSPDVL 260
++ V+
Sbjct: 87 NTGQVV 92
Score = 33.5 bits (75), Expect = 1.0, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 819 LNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLS 878
+N S HG G+Y+ I P A +G + GDRVL++N +++G ++ ++ + L
Sbjct: 33 VNTSVRHG-----GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG-ATHKQAVETLR 86
Query: 879 DSPDVL 884
++ V+
Sbjct: 87 NTGQVV 92
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 39.3 bits (90), Expect = 0.021, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 75 EALGLELVGGRDDPFYPNDSSIYVSNIVKGSVT--DGKLKKKEEVARIKKQC--EDMNQE 130
+ LG + GG + P D+SIYV+ I++G DGKL+ +++ + C E ++E
Sbjct: 9 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEE 68
Query: 131 KNTALR 136
TAL+
Sbjct: 69 AVTALK 74
Score = 33.9 bits (76), Expect = 0.78, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD 258
++ +Y+ KI G A K+G L +GD++L++N+ ++ ++ E + L ++ D
Sbjct: 27 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTH-EEAVTALKNTSD 78
Score = 33.9 bits (76), Expect = 0.78, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD 882
++ +Y+ KI G A K+G L +GD++L++N+ ++ ++ E + L ++ D
Sbjct: 27 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTH-EEAVTALKNTSD 78
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 38.9 bits (89), Expect = 0.022, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 261
GL + G++I ++ PG LA G LAV D V+ +N V G + + ++++S ++
Sbjct: 33 GLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNL-- 90
Query: 262 ITTLKPTS 269
I T+KP +
Sbjct: 91 IITVKPAN 98
Score = 38.9 bits (89), Expect = 0.022, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 885
GL + G++I ++ PG LA G LAV D V+ +N V G + + ++++S ++
Sbjct: 33 GLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNL-- 90
Query: 886 ITTLKPTS 893
I T+KP +
Sbjct: 91 IITVKPAN 98
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 1115 LPDYCCSHKPHPGELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQ 1174
LP CC K G +H +K G ++ V S A + GL GD+
Sbjct: 3 LPRLCCLEKGPNGYGFHLHGEKG------------KLGQYIRLVEPGSPAEKAGLLAGDR 50
Query: 1175 LLEVCGINMRSATYQLAASVLRQCGNSITMLV 1206
L+EV G N+ T+Q S +R N++ +LV
Sbjct: 51 LVEVNGENVEKETHQQVVSRIRAALNAVRLLV 82
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 1237 PRFLMIETRKCSNLGISLVGGNA-VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 1292
PR +E + + G L G +G Y+ V+ GS AGL GDR++E NG ++
Sbjct: 4 PRLCCLE-KGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENV 59
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 201 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVD 241
HG + G YI + PGS A K G LA GDR++ +N V+
Sbjct: 21 HGEKGKLGQYIRLVEPGSPAEKAGLLA-GDRLVEVNGENVE 60
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 825 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVD 865
HG + G YI + PGS A K G LA GDR++ +N V+
Sbjct: 21 HGEKGKLGQYIRLVEPGSPAEKAGLLA-GDRLVEVNGENVE 60
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 38.9 bits (89), Expect = 0.026, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 261
GL + G++I ++ PG LA G LAV D V+ +N V G + + ++++S ++
Sbjct: 61 GLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNL-- 118
Query: 262 ITTLKPTS 269
I T+KP +
Sbjct: 119 IITVKPAN 126
Score = 38.9 bits (89), Expect = 0.026, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 885
GL + G++I ++ PG LA G LAV D V+ +N V G + + ++++S ++
Sbjct: 61 GLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNL-- 118
Query: 886 ITTLKPTS 893
I T+KP +
Sbjct: 119 IITVKPAN 126
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 38.9 bits (89), Expect = 0.027, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKG--SVTDGKLKKKEEVARIKK 122
N LG + GG D+P P+D I+++ I+ G + DG+L + V R+ +
Sbjct: 14 NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNE 64
Score = 36.2 bits (82), Expect = 0.17, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP 257
+ G++I KI PG AA +G L V D VL +N V + +R AL P
Sbjct: 33 DPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGP 84
Score = 36.2 bits (82), Expect = 0.17, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP 881
+ G++I KI PG AA +G L V D VL +N V + +R AL P
Sbjct: 33 DPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGP 84
Score = 31.6 bits (70), Expect = 3.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 767 VNDCIVRVNNLDCSNVSKRMVLETVRSSG 795
VNDC++RVN +D S V +E ++ +G
Sbjct: 55 VNDCVLRVNEVDVSEVVHSRAVEALKEAG 83
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 1115 LPDYCCSHKPHPGELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQ 1174
LP CC K G +H +K G ++ V S A + GL GD+
Sbjct: 3 LPRLCCLEKGPNGYGFHLHGEKG------------KLGQYIRLVEPGSPAEKAGLLAGDR 50
Query: 1175 LLEVCGINMRSATYQLAASVLRQCGNSITMLV 1206
L+EV G N+ T+Q S +R N++ +LV
Sbjct: 51 LVEVNGENVEKETHQQVVSRIRAALNAVRLLV 82
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 1237 PRFLMIETRKCSNLGISLVGGNA-VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 1292
PR +E + + G L G +G Y+ V+ GS AGL GDR++E NG ++
Sbjct: 4 PRLCCLE-KGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENV 59
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 201 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVD 241
HG + G YI + PGS A K G LA GDR++ +N V+
Sbjct: 21 HGEKGKLGQYIRLVEPGSPAEKAGLLA-GDRLVEVNGENVE 60
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 825 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVD 865
HG + G YI + PGS A K G LA GDR++ +N V+
Sbjct: 21 HGEKGKLGQYIRLVEPGSPAEKAGLLA-GDRLVEVNGENVE 60
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz
Domain-Containing Protein 1
Length = 114
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 1149 DSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLV 1206
D+ G + + E S A + GL GD++L + G+ + + ++R+ GNS+T+LV
Sbjct: 36 DTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV 93
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 38.5 bits (88), Expect = 0.031, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 1126 PGELRRVHIDKSVEPLGIQIQCL----------DSGGVFVSTVSEHSLASQVG-LQVGDQ 1174
PG+ V + K+ LGI + L GG++V + A G + GD+
Sbjct: 2 PGDTFEVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDR 61
Query: 1175 LLEVCGINMRSATYQLAASVLRQCGNSITMLVQ 1207
+L V G+++ AT++ A LR G + +L++
Sbjct: 62 VLAVNGVSLEGATHKQAVETLRNTGQVVHLLLE 94
Score = 36.2 bits (82), Expect = 0.18, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 183 AMAVTNYLDGLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDG 242
++VT D +N S HG G+Y+ I P A +G + GDRVL++N +++G
Sbjct: 18 GISVTVLFDKGGVNTSVRHG-----GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG 72
Query: 243 LSSAREGMALLSDSPDVL 260
++ ++ + L ++ V+
Sbjct: 73 -ATHKQAVETLRNTGQVV 89
Score = 33.5 bits (75), Expect = 0.98, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 819 LNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLS 878
+N S HG G+Y+ I P A +G + GDRVL++N +++G ++ ++ + L
Sbjct: 30 VNTSVRHG-----GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG-ATHKQAVETLR 83
Query: 879 DSPDVL 884
++ V+
Sbjct: 84 NTGQVV 89
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 65 DMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVK--GSVTDGKLKKKEEVARIKK 122
++NLT P+ LG +VGG D + NDS IYVS I + + DG+L++ +++ +
Sbjct: 12 EINLTR-GPS-GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNG 69
Query: 123 Q 123
Q
Sbjct: 70 Q 70
Score = 37.4 bits (85), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 1152 GVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQY 1208
G++VS + E+ A+ G LQ GD++L V G ++++ +Q A + R G ++++ VQ+
Sbjct: 40 GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQH 97
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 1244 TRKCSNLGISLVGG-------NAVGIYVHSV-QSGSLGYSAGLRTGDRILEYNGTDLR 1293
TR S LG ++VGG N GIYV + ++G+ L+ GD+IL NG DL+
Sbjct: 16 TRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLK 73
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGL 243
+SG+Y+ +I AA +G L GD++LS+N + + L
Sbjct: 38 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNL 75
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGL 867
+SG+Y+ +I AA +G L GD++LS+N + + L
Sbjct: 38 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNL 75
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 38.5 bits (88), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 12/89 (13%)
Query: 1126 PGELRRVHIDKSVEPLGIQIQCLDSGG-------VFVSTVSEHSLASQVG-LQVGDQLLE 1177
PG+ + I K LG+ I GG + + V E A++ G L GDQ+LE
Sbjct: 15 PGQEMIIEISKGRSGLGLSI----VGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILE 70
Query: 1178 VCGINMRSATYQLAASVLRQCGNSITMLV 1206
V G+++R+++++ A + LRQ + ++V
Sbjct: 71 VNGVDLRNSSHEEAITALRQTPQKVRLVV 99
Score = 37.4 bits (85), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 1240 LMIETRKC-SNLGISLVGGNAV---GIYVHSV-QSGSLGYSAGLRTGDRILEYNGTDLR 1293
++IE K S LG+S+VGG I +H V + G+ L GD+ILE NG DLR
Sbjct: 19 MIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLR 77
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 38.5 bits (88), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 65 DMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVK--GSVTDGKLKKKEEVARIKK 122
++NLT P+ LG +VGG D + NDS IYVS I + + DG+L++ +++ +
Sbjct: 10 EINLTR-GPS-GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNG 67
Query: 123 Q 123
Q
Sbjct: 68 Q 68
Score = 37.4 bits (85), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 1152 GVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQY 1208
G++VS + E+ A+ G LQ GD++L V G ++++ +Q A + R G ++++ VQ+
Sbjct: 38 GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQH 95
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 1244 TRKCSNLGISLVGG-------NAVGIYVHSV-QSGSLGYSAGLRTGDRILEYNGTDLR 1293
TR S LG ++VGG N GIYV + ++G+ L+ GD+IL NG DL+
Sbjct: 14 TRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLK 71
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGL 243
+SG+Y+ +I AA +G L GD++LS+N + + L
Sbjct: 36 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNL 73
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGL 867
+SG+Y+ +I AA +G L GD++LS+N + + L
Sbjct: 36 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNL 73
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 38.5 bits (88), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 1115 LPDYCCSHKPHPGELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQ 1174
LP CC K G +H +K G ++ V S A + GL GD+
Sbjct: 2 LPRLCCLEKGPNGYGFHLHGEKG------------KLGQYIRLVEPGSPAEKAGLLAGDR 49
Query: 1175 LLEVCGINMRSATYQLAASVLRQCGNSITMLV 1206
L+EV G N+ T+Q S +R N++ +LV
Sbjct: 50 LVEVNGENVEKETHQQVVSRIRAALNAVRLLV 81
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 1260 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 1292
+G Y+ V+ GS AGL GDR++E NG ++
Sbjct: 26 LGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENV 58
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 201 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVD 241
HG + G YI + PGS A K G LA GDR++ +N V+
Sbjct: 20 HGEKGKLGQYIRLVEPGSPAEKAGLLA-GDRLVEVNGENVE 59
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 825 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVD 865
HG + G YI + PGS A K G LA GDR++ +N V+
Sbjct: 20 HGEKGKLGQYIRLVEPGSPAEKAGLLA-GDRLVEVNGENVE 59
>pdb|2JWE|A Chain A, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
pdb|2JWE|B Chain B, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
Length = 88
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 200 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 244
++GL L S +++ +IS SLAA++G++ GD VL IN + +S
Sbjct: 13 EYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMS 57
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 824 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 868
++GL L S +++ +IS SLAA++G++ GD VL IN + +S
Sbjct: 13 EYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMS 57
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery Of
Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 38.5 bits (88), Expect = 0.036, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 208 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 266
G+Y+ + G A +G LA GD++LS++ R++ GLS R L++ + V+T+ K
Sbjct: 39 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAA-ELMTRTSSVVTLEVAK 96
Score = 38.5 bits (88), Expect = 0.036, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 832 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 890
G+Y+ + G A +G LA GD++LS++ R++ GLS R L++ + V+T+ K
Sbjct: 39 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAA-ELMTRTSSVVTLEVAK 96
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 1236 EPRFLMIETRKCSNLGISLV-----GGNAVGIYVHS-VQSGSLGYSAGLRTGDRILEYNG 1289
EP + + +K + +G+S+V G + +GIYV S V+ G+ L GD++L +G
Sbjct: 9 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 68
Query: 1290 TDL 1292
L
Sbjct: 69 RSL 71
>pdb|3CYY|A Chain A, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
pdb|3CYY|B Chain B, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
Length = 92
Score = 38.1 bits (87), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 200 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 244
++GL L S +++ +IS SLAA++G++ GD VL IN + +S
Sbjct: 16 EYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMS 60
Score = 38.1 bits (87), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 824 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 868
++GL L S +++ +IS SLAA++G++ GD VL IN + +S
Sbjct: 16 EYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMS 60
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 38.1 bits (87), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 18/107 (16%)
Query: 1475 RPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMHCPQAAMEKG-------------- 1517
RP+++ G T+ KL ++PD F P P+A G
Sbjct: 18 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRTPRAGEVNGKDYNFVSVDEFKSM 77
Query: 1518 LADNLFVDYRKKGAYFECTSVAAVKDACDKNNAHVILDVSLAGVERL 1564
+ +N F+++ + + ++VA+VK K+ ILD+ + GV+ +
Sbjct: 78 IKNNEFIEWAQFSGNYYGSTVASVKQVS-KSGKTCILDIDMQGVKSV 123
>pdb|2RCZ|A Chain A, Structure Of The Second Pdz Domain Of Zo-1
pdb|2RCZ|B Chain B, Structure Of The Second Pdz Domain Of Zo-1
Length = 81
Score = 38.1 bits (87), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 200 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 244
++GL L S +++ +IS SLAA++G++ GD VL IN + +S
Sbjct: 14 EYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMS 58
Score = 38.1 bits (87), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 824 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 868
++GL L S +++ +IS SLAA++G++ GD VL IN + +S
Sbjct: 14 EYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMS 58
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 38.1 bits (87), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 261
GL + G++I ++ PG LA G LAV D V+ +N V G + + ++++S ++
Sbjct: 35 GLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNL-- 92
Query: 262 ITTLKP 267
I T+KP
Sbjct: 93 IITVKP 98
Score = 38.1 bits (87), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 885
GL + G++I ++ PG LA G LAV D V+ +N V G + + ++++S ++
Sbjct: 35 GLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNL-- 92
Query: 886 ITTLKP 891
I T+KP
Sbjct: 93 IITVKP 98
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 261
GL + G++I ++ PG LA G LAV D V+ +N V G + + ++++S ++
Sbjct: 61 GLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNL-- 118
Query: 262 ITTLKP 267
I T+KP
Sbjct: 119 IITVKP 124
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 885
GL + G++I ++ PG LA G LAV D V+ +N V G + + ++++S ++
Sbjct: 61 GLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNL-- 118
Query: 886 ITTLKP 891
I T+KP
Sbjct: 119 IITVKP 124
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 37.7 bits (86), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 65 DMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVK--GSVTDGKLKKKEEVARIKK 122
++NLT P+ LG +VGG D + NDS IYVS I + + DG+L++ +++ +
Sbjct: 20 EINLTR-GPS-GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNG 77
Query: 123 Q 123
Q
Sbjct: 78 Q 78
Score = 37.4 bits (85), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 1152 GVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQY 1208
G++VS + E+ A+ G LQ GD++L V G ++++ +Q A + R G ++++ VQ+
Sbjct: 48 GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQH 105
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 1244 TRKCSNLGISLVGG-------NAVGIYVHSV-QSGSLGYSAGLRTGDRILEYNGTDLR 1293
TR S LG ++VGG N GIYV + ++G+ L+ GD+IL NG DL+
Sbjct: 24 TRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLK 81
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGL 243
+SG+Y+ +I AA +G L GD++LS+N + + L
Sbjct: 46 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNL 83
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGL 867
+SG+Y+ +I AA +G L GD++LS+N + + L
Sbjct: 46 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNL 83
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 37.7 bits (86), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 170 QQQHEDAVKEINTAMAVTNYLDGLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVG 229
Q H + + + TA VT + G+QL S TL S I I S A + G L +G
Sbjct: 1 QVVHTETTEVVLTADPVTGF--GIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIG 58
Query: 230 DRVLSINNRTVDGLSSAREGMALLSDS 256
DRV++IN + S+ E LL DS
Sbjct: 59 DRVMAINGIPTED-STFEEANQLLRDS 84
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 816 QLQLNNSYDHGLTLESG--------LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGL 867
+L +S + G+T+ S L I I GS+A + G+L +GD++L+I+N +D
Sbjct: 112 KLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSC 171
Query: 868 S 868
S
Sbjct: 172 S 172
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 8/56 (14%)
Query: 197 NSYDHGLTLESG--------LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 244
+S + G+T+ S L I I GS+A + G+L +GD++L+I+N +D S
Sbjct: 117 HSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCS 172
Score = 31.2 bits (69), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 1153 VFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211
+ +S + + S+A + G L++GD+LL + I + S + + A +L+QC + + + ++ D
Sbjct: 137 LVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDED 196
Score = 30.4 bits (67), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 817 LQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMAL 876
+QL S TL S I I S A + G L +GDRV++IN + S+ E L
Sbjct: 22 IQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTED-STFEEANQL 80
Query: 877 LSDS 880
L DS
Sbjct: 81 LRDS 84
>pdb|3KZD|A Chain A, Crystal Structure Of Free T-Cell Lymphoma Invasion And Metas
Pdz Domain
pdb|3KZE|A Chain A, Crystal Structure Of T-Cell Lymphoma Invasion And Metastasis
Complex With Ssrkeyya Peptide
pdb|3KZE|B Chain B, Crystal Structure Of T-Cell Lymphoma Invasion And Metastasis
Complex With Ssrkeyya Peptide
pdb|3KZE|C Chain C, Crystal Structure Of T-Cell Lymphoma Invasion And Metastasis
Complex With Ssrkeyya Peptide
Length = 94
Score = 37.7 bits (86), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 12/88 (13%)
Query: 1132 VHIDKS---VEPLGIQIQCLDSGGV---FVSTVSEHSLASQVGLQVGDQLLEVCGINMRS 1185
+HI+KS + G + ++ G+ +V++V E LAS+ GL+ GD++LE IN R+
Sbjct: 10 IHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILE---INNRA 66
Query: 1186 ATYQLAASVLRQCGN--SITMLVQYSPD 1211
A L +S+L+ + S+ +LV+ P+
Sbjct: 67 AD-ALNSSMLKDFLSQPSLGLLVRTYPE 93
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 209 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSA 246
LY+ + LA+K+G L GD +L INNR D L+S+
Sbjct: 37 LYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSS 73
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 833 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSA 870
LY+ + LA+K+G L GD +L INNR D L+S+
Sbjct: 37 LYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSS 73
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 1149 DSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLV 1206
D+ G + + E S A + GL GD++L + G+ + + ++R+ GNS+T+LV
Sbjct: 25 DTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV 82
Score = 30.4 bits (67), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 1235 GEPRFLMIETRKCSNLGISL-VGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLR 1293
G PR + ++ N G L + + G + ++ GS AGL GDR+L NG +
Sbjct: 1 GSPRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVD 60
Query: 1294 XXXXXXXXXXXXKPADKVTVLA 1315
K + VT+L
Sbjct: 61 KEEHAQVVELVRKSGNSVTLLV 82
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 208 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 267
G+Y+ + G A +G LA GD++LS++ R++ GLS R L++ + V+T+ K
Sbjct: 33 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAA-ELMTRTSSVVTLEVAKQ 91
Query: 268 TSL 270
+L
Sbjct: 92 GAL 94
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 832 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 891
G+Y+ + G A +G LA GD++LS++ R++ GLS R L++ + V+T+ K
Sbjct: 33 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAA-ELMTRTSSVVTLEVAKQ 91
Query: 892 TSL 894
+L
Sbjct: 92 GAL 94
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 1236 EPRFLMIETRKCSNLGISLV-----GGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 1289
EP + + +K + +G+S+V G + +GIYV SV G G L GD++L +G
Sbjct: 3 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 62
Query: 1290 TDL 1292
L
Sbjct: 63 RSL 65
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 37.7 bits (86), Expect = 0.060, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 9/66 (13%)
Query: 73 PNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLKKKEEVARIK-KQCEDMNQ 129
P + LGL +VG R ND+ ++VS+IVKG + DG+L + +++ + + + Q
Sbjct: 14 PGKGLGLSIVGKR------NDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQ 67
Query: 130 EKNTAL 135
E AL
Sbjct: 68 EAVAAL 73
Score = 33.9 bits (76), Expect = 0.76, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 1242 IETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 1293
++ + LG+S+VG N G++V + G + + G L GD+IL NG D+R
Sbjct: 10 LQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVR 63
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
Length = 106
Score = 37.4 bits (85), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 208 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 267
G+Y+ + G A +G LA GD++LS++ R++ GLS R L++ + V+T+ K
Sbjct: 39 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERA-AELMTRTSSVVTLEVAKQ 97
Query: 268 TSL 270
++
Sbjct: 98 GAI 100
Score = 37.4 bits (85), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 832 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 891
G+Y+ + G A +G LA GD++LS++ R++ GLS R L++ + V+T+ K
Sbjct: 39 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERA-AELMTRTSSVVTLEVAKQ 97
Query: 892 TSL 894
++
Sbjct: 98 GAI 100
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 1236 EPRFLMIETRKCSNLGISLV-----GGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 1289
EP + + +K + +G+S+V G + +GIYV SV G G L GD++L +G
Sbjct: 9 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 68
Query: 1290 TDL 1292
L
Sbjct: 69 RSL 71
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 37.4 bits (85), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 1128 ELRRVHIDK-SVEPLGIQIQC-LDSG-GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMR 1184
+L+ V +D+ E LG+ ++ L+ G G+F+S + + A VGLQVGD+++ + G ++
Sbjct: 84 KLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSIS 143
Query: 1185 SATYQLAASVLR 1196
S T++ +++R
Sbjct: 144 SCTHEEVINLIR 155
>pdb|2D8I|A Chain A, Solution Structure Of The Pdz Domain Of T-Cell Lymphoma
Invasion And Metastasis 1 Varian
Length = 114
Score = 37.0 bits (84), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 12/94 (12%)
Query: 1126 PGELRRVHIDKS---VEPLGIQIQCLDSGGV---FVSTVSEHSLASQVGLQVGDQLLEVC 1179
P + +HI+KS + G + ++ G+ +V++V E LAS+ GL+ GD++LE
Sbjct: 13 PKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILE-- 70
Query: 1180 GINMRSATYQLAASVLRQCGN--SITMLVQYSPD 1211
IN R+A L +S+L+ + S+ +LV+ P+
Sbjct: 71 -INNRAAD-ALNSSMLKDFLSQPSLGLLVRTYPE 102
Score = 33.9 bits (76), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 209 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSA 246
LY+ + LA+K+G L GD +L INNR D L+S+
Sbjct: 46 LYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSS 82
Score = 33.9 bits (76), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 833 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSA 870
LY+ + LA+K+G L GD +L INNR D L+S+
Sbjct: 46 LYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSS 82
>pdb|1Q3O|A Chain A, Crystal Structure Of The Shank Pdz-ligand Complex Reveals A
Class I Pdz Interaction And A Novel Pdz-pdz Dimerization
pdb|1Q3O|B Chain B, Crystal Structure Of The Shank Pdz-ligand Complex Reveals A
Class I Pdz Interaction And A Novel Pdz-pdz Dimerization
pdb|1Q3P|A Chain A, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals A
Class I Pdz Interaction And A Novel Pdz-Pdz Dimerization
pdb|1Q3P|B Chain B, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals A
Class I Pdz Interaction And A Novel Pdz-Pdz Dimerization
Length = 109
Score = 37.0 bits (84), Expect = 0.082, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1154 FVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSI---TMLVQYSP 1210
++ +V E +A + GL++GD L+EV G N+ ++ +++RQ GN++ ++V P
Sbjct: 48 YLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHP 107
Query: 1211 D 1211
D
Sbjct: 108 D 108
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 1263 YVHSVQSGSLGYSAGLRTGDRILEYNGTDL 1292
Y+ SV G + + AGLR GD ++E NG ++
Sbjct: 48 YLESVDEGGVAWRAGLRMGDFLIEVNGQNV 77
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 37.0 bits (84), Expect = 0.095, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 5/140 (3%)
Query: 1149 DSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQY 1208
D G VS V+ +S A GL+ GD + ++ + AT L + G+++ ++V+
Sbjct: 280 DFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVER 339
Query: 1209 SPDKYHELXXXXXXXXXXXXXXXRGSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQ 1268
L S P + R S GN +G+ V
Sbjct: 340 DNKP---LTLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQE--SPPHGNVIGVQVVGAS 394
Query: 1269 SGSLGYSAGLRTGDRILEYN 1288
S G+ AG+R GD I+ N
Sbjct: 395 ENSAGWRAGIRPGDIIISAN 414
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 37.0 bits (84), Expect = 0.097, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 5/140 (3%)
Query: 1149 DSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQY 1208
D G VS V+ +S A GL+ GD + ++ + AT L + G+++ ++V+
Sbjct: 280 DFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVER 339
Query: 1209 SPDKYHELXXXXXXXXXXXXXXXRGSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQ 1268
L S P + R S GN +G+ V
Sbjct: 340 DNKP---LTLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQE--SPPHGNVIGVQVVGAS 394
Query: 1269 SGSLGYSAGLRTGDRILEYN 1288
S G+ AG+R GD I+ N
Sbjct: 395 ENSAGWRAGIRPGDIIISAN 414
>pdb|3L4F|D Chain D, Crystal Structure Of Betapix Coiled-Coil Domain And Shank
Pdz Complex
Length = 132
Score = 37.0 bits (84), Expect = 0.097, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1154 FVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSI---TMLVQYSP 1210
++ +V E +A + GL++GD L+EV G N+ ++ +++RQ GN++ ++V P
Sbjct: 68 YLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHP 127
Query: 1211 D 1211
D
Sbjct: 128 D 128
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 1263 YVHSVQSGSLGYSAGLRTGDRILEYNGTDL 1292
Y+ SV G + + AGLR GD ++E NG ++
Sbjct: 68 YLESVDEGGVAWRAGLRMGDFLIEVNGQNV 97
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 37.0 bits (84), Expect = 0.10, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 5/140 (3%)
Query: 1149 DSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQY 1208
D G VS V+ +S A GL+ GD + ++ + AT L + G+++ ++V+
Sbjct: 280 DFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVER 339
Query: 1209 SPDKYHELXXXXXXXXXXXXXXXRGSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQ 1268
L S P + R S GN +G+ V
Sbjct: 340 DNKP---LTLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQE--SPPHGNVIGVQVVGAS 394
Query: 1269 SGSLGYSAGLRTGDRILEYN 1288
S G+ AG+R GD I+ N
Sbjct: 395 ENSAGWRAGIRPGDIIISAN 414
>pdb|3QJM|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important For
Its Binding To Different Ligands
pdb|3QJM|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important For
Its Binding To Different Ligands
pdb|3QJN|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important For
Its Binding To Different Ligands
pdb|3QJN|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important For
Its Binding To Different Ligands
pdb|3QJN|C Chain C, Structural Flexibility Of Shank Pdz Domain Is Important For
Its Binding To Different Ligands
pdb|3QJN|D Chain D, Structural Flexibility Of Shank Pdz Domain Is Important For
Its Binding To Different Ligands
pdb|3QJN|E Chain E, Structural Flexibility Of Shank Pdz Domain Is Important For
Its Binding To Different Ligands
pdb|3QJN|F Chain F, Structural Flexibility Of Shank Pdz Domain Is Important For
Its Binding To Different Ligands
pdb|3QJN|G Chain G, Structural Flexibility Of Shank Pdz Domain Is Important For
Its Binding To Different Ligands
pdb|3QJN|H Chain H, Structural Flexibility Of Shank Pdz Domain Is Important For
Its Binding To Different Ligands
Length = 115
Score = 37.0 bits (84), Expect = 0.10, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1154 FVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSI---TMLVQYSP 1210
++ +V E +A + GL++GD L+EV G N+ ++ +++RQ GN++ ++V P
Sbjct: 48 YLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHP 107
Query: 1211 D 1211
D
Sbjct: 108 D 108
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 1263 YVHSVQSGSLGYSAGLRTGDRILEYNGTDL 1292
Y+ SV G + + AGLR GD ++E NG ++
Sbjct: 48 YLESVDEGGVAWRAGLRMGDFLIEVNGQNV 77
>pdb|1V5Q|A Chain A, Solution Structure Of The Pdz Domain From Mouse Glutamate
Receptor Interacting Protein 1a-L (Grip1) Homolog
Length = 122
Score = 36.6 bits (83), Expect = 0.11, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 170 QQQHEDAVKEINTAMAVTNYLDGLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVG 229
Q H + + + TA VT + G+QL S TL S I I S A + G L +G
Sbjct: 10 QVVHTETTEVVLTADPVTGF--GIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIG 67
Query: 230 DRVLSINNRTVDGLSSAREGMALLSDS 256
DRV++IN + S+ E LL DS
Sbjct: 68 DRVMAINGIPTED-STFEEANQLLRDS 93
Score = 30.4 bits (67), Expect = 7.8, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 817 LQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMAL 876
+QL S TL S I I S A + G L +GDRV++IN + S+ E L
Sbjct: 31 IQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTED-STFEEANQL 89
Query: 877 LSDS 880
L DS
Sbjct: 90 LRDS 93
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 1249 NLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNG 1289
+LG+++ GG +GIY+ V GS +GL+ GD+ILE NG
Sbjct: 33 SLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNG 75
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 178 KEINTAMAVTNYLDGLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINN 237
K++N + L GL + ++GL G+YI + PGS A G L VGD++L +N
Sbjct: 22 KKVNLVLGDGRSL-GLTIRGGAEYGL----GIYITGVDPGSEAEGSG-LKVGDQILEVNG 75
Query: 238 RT 239
R+
Sbjct: 76 RS 77
Score = 33.5 bits (75), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 815 TQLQLNNSYDHGLTLESG------LYICKISPGSLAAKEGSLAVGDRVLSINNRT 863
L L + GLT+ G +YI + PGS A G L VGD++L +N R+
Sbjct: 24 VNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRS 77
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 1152 GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQC 1198
G++++ V S A GL+VGDQ+LEV G + + + A +L+
Sbjct: 47 GIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSS 93
>pdb|1P1E|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 101
Score = 36.2 bits (82), Expect = 0.14, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 170 QQQHEDAVKEINTAMAVTNYLDGLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVG 229
Q H + + + TA VT + G+QL S TL S I I S A + G L +G
Sbjct: 1 QVVHTETTEVVLTADPVTGF--GIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIG 58
Query: 230 DRVLSINNRTVDGLSSAREGMALLSDS 256
DRV++IN + S+ E LL DS
Sbjct: 59 DRVMAINGIPTED-STFEEANQLLRDS 84
Score = 30.4 bits (67), Expect = 9.4, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 817 LQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMAL 876
+QL S TL S I I S A + G L +GDRV++IN + S+ E L
Sbjct: 22 IQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTED-STFEEANQL 80
Query: 877 LSDS 880
L DS
Sbjct: 81 LRDS 84
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 36.2 bits (82), Expect = 0.14, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKG--SVTDGKLKKKEEV 117
N LG + GG D+P +D SI+++ I+ G + DG+L+ + +
Sbjct: 12 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSI 57
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 208 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 266
G+Y+ + G A +G LA GD++LS++ R++ GLS R L++ + V+T+ K
Sbjct: 33 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAA-ELMTRTSSVVTLEVAK 90
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 832 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 890
G+Y+ + G A +G LA GD++LS++ R++ GLS R L++ + V+T+ K
Sbjct: 33 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAA-ELMTRTSSVVTLEVAK 90
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 1236 EPRFLMIETRKCSNLGISLV-----GGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 1289
EP + + +K + +G+S+V G + +GIYV SV G G L GD++L +G
Sbjct: 3 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 62
Query: 1290 TDL 1292
L
Sbjct: 63 RSL 65
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 36.2 bits (82), Expect = 0.15, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKG--SVTDGKLKKKEEV 117
N LG + GG D+P +D SI+++ I+ G + DG+L+ + +
Sbjct: 11 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSI 56
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 36.2 bits (82), Expect = 0.15, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKG--SVTDGKLKKKEEV 117
N LG + GG D+P +D SI+++ I+ G + DG+L+ + +
Sbjct: 11 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSI 56
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 120
Score = 36.2 bits (82), Expect = 0.16, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 15/89 (16%)
Query: 1129 LRRVHIDKS-VEPLGIQIQCLDSGGV---------FVSTVSEHSLASQV-GLQVGDQLLE 1177
LR V + K + LGI I +GGV F++ + +A+Q L+VGD+++
Sbjct: 25 LRTVEMKKGPTDSLGISI----AGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVT 80
Query: 1178 VCGINMRSATYQLAASVLRQCGNSITMLV 1206
+CG + T+ A ++L+ SI M V
Sbjct: 81 ICGTSTEGMTHTQAVNLLKNASGSIEMQV 109
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 36.2 bits (82), Expect = 0.16, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 1237 PRFLMIETRKCSNLGISLVGGNA--VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLR 1293
PR + ++ + LG ++ GG A +GI++ V S + AGL+ GD++L N D +
Sbjct: 16 PRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQ 74
Score = 34.3 bits (77), Expect = 0.60, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 1152 GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQY 1208
G+F+S V S A + GLQ GDQ+L V ++ + + A +L+ I+M V++
Sbjct: 42 GIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT-AREISMRVRF 97
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 1152 GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLA 1191
G++V+ VSE A GLQ+GD++++V G +M T+ A
Sbjct: 55 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 94
Score = 34.3 bits (77), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 1261 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 1292
GIYV V G AGL+ GD+I++ NG D+
Sbjct: 55 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDM 86
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 1152 GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLA 1191
G++V+ VSE A GLQ+GD++++V G +M T+ A
Sbjct: 44 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 83
Score = 34.3 bits (77), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 1261 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 1292
GIYV V G AGL+ GD+I++ NG D+
Sbjct: 44 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDM 75
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 36/58 (62%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 263
E G+++ +I GS+A ++G L D++L+IN + +D + ++ +++L + D + +
Sbjct: 48 ELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLV 105
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 36/58 (62%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887
E G+++ +I GS+A ++G L D++L+IN + +D + ++ +++L + D + +
Sbjct: 48 ELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLV 105
>pdb|2UZC|A Chain A, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|B Chain B, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|C Chain C, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|D Chain D, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|E Chain E, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
Length = 88
Score = 35.8 bits (81), Expect = 0.20, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 1155 VSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211
+S++ + A+Q +++GD +L + GIN + T+ A + ++ C S+ M +Q D
Sbjct: 31 ISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRESD 87
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 1152 GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLA 1191
G++V+ VSE A GLQ+GD++++V G +M T+ A
Sbjct: 46 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 85
Score = 34.3 bits (77), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 1261 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 1292
GIYV V G AGL+ GD+I++ NG D+
Sbjct: 46 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDM 77
>pdb|2CSJ|A Chain A, Solution Structure Of N-Terminal Pdz Domain From Mouse
Tjp2
Length = 117
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 76 ALGLELVGGRDDPFYPN-DSSIYVSNIVKGSVTDGKLKKKEEVARI 120
G+ + GGRD+P + N ++SI +S+++ G DG L++ + V +
Sbjct: 27 GFGIAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMV 72
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 1152 GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLA 1191
G++V+ VSE A GLQ+GD++++V G +M T+ A
Sbjct: 54 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 93
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 1261 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 1292
GIYV V G AGL+ GD+I++ NG D+
Sbjct: 54 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDM 85
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 209 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDG 242
+YI ++ PG +A + G L GD++LS+N +V+G
Sbjct: 32 IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 65
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 833 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDG 866
+YI ++ PG +A + G L GD++LS+N +V+G
Sbjct: 32 IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 65
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 1132 VHIDKSVEPLGIQIQCLDSGG------VFVSTVSEHSLASQ-VGLQVGDQLLEVCGINMR 1184
V + K+ E LG I GG +++S V +A + GL+ GDQLL V G+++
Sbjct: 9 VELPKTDEGLGFNIM----GGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVE 64
Query: 1185 SATYQLAASVLRQCGNSITMLVQYSP 1210
++ A +L+ S+ ++V+ P
Sbjct: 65 GEQHEKAVELLKAAQGSVKLVVRSGP 90
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 1152 GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLA 1191
G++V+ VSE A GLQ+GD++++V G +M T+ A
Sbjct: 54 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 93
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 1261 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 1292
GIYV V G AGL+ GD+I++ NG D+
Sbjct: 54 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDM 85
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 1152 GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLA 1191
G++V+ VSE A GLQ+GD++++V G +M T+ A
Sbjct: 54 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 93
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 1261 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 1292
GIYV V G AGL+ GD+I++ NG D+
Sbjct: 54 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDM 85
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 1152 GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLA 1191
G++V+ VSE A GLQ+GD++++V G +M T+ A
Sbjct: 65 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 104
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 1261 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 1292
GIYV V G AGL+ GD+I++ NG D+
Sbjct: 65 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDM 96
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of Alpha-
Syntrophin
Length = 263
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 1130 RRVHIDKS-VEPLGIQIQCLDSGG------VFVSTVSEHSLASQV-GLQVGDQLLEVCGI 1181
RRV + K+ LGI I+ GG + +S + + A Q L VGD +L V G
Sbjct: 79 RRVTVRKADAGGLGISIK----GGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGE 134
Query: 1182 NMRSATYQLAASVLRQCGNSITMLVQY 1208
++ SAT+ A L++ G + + V+Y
Sbjct: 135 DLSSATHDEAVQALKKTGKEVVLEVKY 161
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 35.0 bits (79), Expect = 0.32, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 1248 SNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT 1290
+ G+++ G N V +V SV+ AG++TGDRI++ NGT
Sbjct: 18 NGFGLTVSGDNPV--FVQSVKEDGAAMRAGVQTGDRIIKVNGT 58
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1153 VFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSP 1210
VFV +V E A + G+Q GD++++V G + + + L L + G+ + + VQ P
Sbjct: 30 VFVQSVKEDGAAMRAGVQTGDRIIKVNG-TLVTHSNHLEVVKLIKSGSYVALTVQGRP 86
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 35.0 bits (79), Expect = 0.33, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 1155 VSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLV 1206
+S V S A VGL+ GDQ+L V IN++ A+++ ++ +C + M++
Sbjct: 27 LSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVI 78
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 35.0 bits (79), Expect = 0.39, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 209 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKPT 268
+ I ++ G LA + G++ +GDR+L+IN+ ++ G E + LL + + +T+ K T
Sbjct: 32 IIISSLTKGGLAERTGAIHIGDRILAINSSSLKG-KPLSEAIHLLQMAGETVTLKIKKQT 90
Score = 35.0 bits (79), Expect = 0.39, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 833 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKPT 892
+ I ++ G LA + G++ +GDR+L+IN+ ++ G E + LL + + +T+ K T
Sbjct: 32 IIISSLTKGGLAERTGAIHIGDRILAINSSSLKG-KPLSEAIHLLQMAGETVTLKIKKQT 90
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 1132 VHIDKSVEPLGIQIQCLDS--GG---VFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRS 1185
+ + K E LG I D GG ++V + A Q G L+ GD+L+EV G+++
Sbjct: 15 IQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAG 74
Query: 1186 ATYQLAASVLR--QCGNSITMLVQYSPDKYH 1214
+ + S+LR + ++++LV + +H
Sbjct: 75 KSQEEVVSLLRSTKMEGTVSLLVFRQEEAFH 105
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz Domain
Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz Domain
Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz Domain
Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz Domain
Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 34.7 bits (78), Expect = 0.43, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 1127 GELRRVHIDKS-VEPLGIQIQCLDSGGV--FVSTVSEHSLASQVG-LQVGDQLLEVCGIN 1182
G +R+V + K E LGI I GV +S + A + G L VGD +L V G+N
Sbjct: 1 GPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVN 60
Query: 1183 MRSATYQLAASVLRQCGNSITMLVQY 1208
+R ++ A ++L Q I V Y
Sbjct: 61 LRDTKHKEAVTILSQQRGEIEFEVVY 86
Score = 31.6 bits (70), Expect = 3.5, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 13/94 (13%)
Query: 1235 GEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLG-YSAGLRTGDRILEYNGTD 1291
G R +++ LGIS+ GG + V I + + G GL GD IL NG +
Sbjct: 1 GPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVN 60
Query: 1292 LRXXXXXXXXXXXXKPADKVTVLAQYSVERYNEV 1325
LR K + VT+L+Q E EV
Sbjct: 61 LR----------DTKHKEAVTILSQQRGEIEFEV 84
>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In Complex
With An Elks1b C-Terminal Peptide
Length = 114
Score = 34.7 bits (78), Expect = 0.46, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 1250 LGISLVGGNA-----VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 1292
LG+ +VGG +G ++ V+ GSL G LR GD +LE+NG L
Sbjct: 39 LGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPL 87
>pdb|2CSS|A Chain A, Solution Structure Of The Pdz Domain Of Human Kiaa0340
Protein
Length = 121
Score = 34.7 bits (78), Expect = 0.47, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 1250 LGISLVGGNA-----VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 1292
LG+ +VGG +G ++ V+ GSL G LR GD +LE+NG L
Sbjct: 39 LGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPL 87
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 1139 EPLGIQIQ---------CLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQ 1189
E G +IQ C + + E S A GLQ GD L + G++ TY+
Sbjct: 27 ETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYK 86
Query: 1190 LAASVLRQCGNSITM 1204
++R GN +T+
Sbjct: 87 QVVDLIRSSGNLLTI 101
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 34.3 bits (77), Expect = 0.53, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 1127 GELRRVHIDKS-VEPLGIQIQCLDSGGV--FVSTVSEHSLASQVG-LQVGDQLLEVCGIN 1182
G +R+V + K E LGI I GV +S + A + G L VGD +L V G+N
Sbjct: 8 GPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVN 67
Query: 1183 MRSATYQLAASVLRQCGNSITMLVQY 1208
+R ++ A ++L Q I V Y
Sbjct: 68 LRDTKHKEAVTILSQQRGEIEFEVVY 93
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 1232 RGSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLG-YSAGLRTGDRILEYN 1288
+G G R +++ LGIS+ GG + V I + + G GL GD IL N
Sbjct: 5 QGVGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVN 64
Query: 1289 GTDLRXXXXXXXXXXXXKPADKVTVLAQYSVERYNEV 1325
G +LR K + VT+L+Q E EV
Sbjct: 65 GVNLR----------DTKHKEAVTILSQQRGEIEFEV 91
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of Numb-Binding
Protein 2
Length = 95
Score = 34.3 bits (77), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 204 TLESGLYICKISPGSLAAKEGSLAVGDRVLSINN 237
T E G++I + G LAA++G L+ DRVL+IN
Sbjct: 26 TDEPGVFILDLLEGGLAAQDGRLSSNDRVLAING 59
Score = 34.3 bits (77), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 828 TLESGLYICKISPGSLAAKEGSLAVGDRVLSINN 861
T E G++I + G LAA++G L+ DRVL+IN
Sbjct: 26 TDEPGVFILDLLEGGLAAQDGRLSSNDRVLAING 59
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
Length = 111
Score = 33.9 bits (76), Expect = 0.72, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 208 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDG 242
GLYI ++ + AA +G++A GD + +N R++ G
Sbjct: 32 GLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKG 66
Score = 33.9 bits (76), Expect = 0.72, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 832 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDG 866
GLYI ++ + AA +G++A GD + +N R++ G
Sbjct: 32 GLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKG 66
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz Domain
Length = 95
Score = 33.9 bits (76), Expect = 0.80, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 1238 RFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSG-SLGYSAGLRTGDRILEYNGTDLR 1293
R + + ++ LGIS+ GG N + I + + G + S LR GD IL NGTDLR
Sbjct: 5 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLR 63
Score = 32.0 bits (71), Expect = 2.8, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 1129 LRRVHIDKS-VEPLGIQIQCLDSGG------VFVSTVSEHSLASQV-GLQVGDQLLEVCG 1180
+RRV + K LGI I+ GG + +S + A Q L++GD +L V G
Sbjct: 4 VRRVRVVKQEAGGLGISIK----GGRENRMPILISKIFPGLAADQSRALRLGDAILSVNG 59
Query: 1181 INMRSATYQLAASVLRQCGNSITMLVQY 1208
++R AT+ A L++ G + + V++
Sbjct: 60 TDLRQATHDQAVQALKRAGKEVLLEVKF 87
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad-
Like Protein
Length = 129
Score = 33.9 bits (76), Expect = 0.83, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 266
SG+Y+ + PGS A G + V D++++++ + G ++ + + +L ++ V+ +T ++
Sbjct: 46 SGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFAN-HDVVEVLRNAGQVVHLTLVR 104
Query: 267 PTSLGEHSP 275
+ SP
Sbjct: 105 RKTSSSTSP 113
Score = 33.9 bits (76), Expect = 0.83, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 890
SG+Y+ + PGS A G + V D++++++ + G ++ + + +L ++ V+ +T ++
Sbjct: 46 SGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFAN-HDVVEVLRNAGQVVHLTLVR 104
Query: 891 PTSLGEHSP 899
+ SP
Sbjct: 105 RKTSSSTSP 113
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 33.5 bits (75), Expect = 1.0, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 1139 EPLGIQIQCLDSGGV--FVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVL 1195
E LGI I GV +S + A + G L VGD +L V G+N+R ++ A ++L
Sbjct: 39 EGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTIL 98
Query: 1196 RQCGNSITMLVQY 1208
Q I V Y
Sbjct: 99 SQQRGEIEFEVVY 111
Score = 31.2 bits (69), Expect = 5.2, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 1250 LGISLVGG--NAVGIYVHSVQSGSLG-YSAGLRTGDRILEYNGTDLRXXXXXXXXXXXXK 1306
LGIS+ GG + V I + + G GL GD IL NG +LR K
Sbjct: 41 LGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR----------DTK 90
Query: 1307 PADKVTVLAQYSVERYNEV 1325
+ VT+L+Q E EV
Sbjct: 91 HKEAVTILSQQRGEIEFEV 109
>pdb|2EDV|A Chain A, Solution Structure Of The Pdz Domain From Human Ferm And
Pdz Domain Containing 1
Length = 96
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 200 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 259
D+G + L + ++ + + G L GD++L +NN + LS R + +L ++ D
Sbjct: 22 DYGFHISESLPLTVVAVTAGGSAHGKLFPGDQILQMNNEPAEDLSWER-AVDILREAEDS 80
Query: 260 LTITTLKPTSLGEHS 274
L+IT ++ TS G S
Sbjct: 81 LSITVVRCTSSGPSS 95
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 824 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 883
D+G + L + ++ + + G L GD++L +NN + LS R + +L ++ D
Sbjct: 22 DYGFHISESLPLTVVAVTAGGSAHGKLFPGDQILQMNNEPAEDLSWER-AVDILREAEDS 80
Query: 884 LTITTLKPTSLGEHS 898
L+IT ++ TS G S
Sbjct: 81 LSITVVRCTSSGPSS 95
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding
Motif
Length = 90
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 201 HGLTLES-----GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSD 255
+G L S G YI + PGS AA+ G L DR++ +N + V+GL A E +A +
Sbjct: 17 YGFNLHSDKSRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHA-EVVASIKA 74
Query: 256 SPDVLTITTLKPTS 269
D + + P++
Sbjct: 75 REDEARLLVVGPST 88
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 825 HGLTLES-----GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSD 879
+G L S G YI + PGS AA+ G L DR++ +N + V+GL A E +A +
Sbjct: 17 YGFNLHSDKSRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHA-EVVASIKA 74
Query: 880 SPDVLTITTLKPTS 893
D + + P++
Sbjct: 75 REDEARLLVVGPST 88
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 1261 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 1292
G Y+ SV GS +GLR DR++E NG ++
Sbjct: 29 GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 60
>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 106
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 1152 GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSIT-MLVQYSP 1210
GV+++ ++ +A + G+ D L+EV G N+ A+++ +++ G+ + +LV
Sbjct: 33 GVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKET 92
Query: 1211 DKYH 1214
DK H
Sbjct: 93 DKRH 96
>pdb|2Q3G|A Chain A, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C-
Terminal Extension From Human Beta-Tropomyosin
pdb|2Q3G|B Chain B, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C-
Terminal Extension From Human Beta-Tropomyosin
Length = 89
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 1155 VSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITM 1204
+S ++ A+Q G+ VGD +L + G N S T+ A + +R CG +++
Sbjct: 31 ISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSL 80
>pdb|1WF7|A Chain A, Solution Structure Of The Pdz Domain Of Enigma Homologue
Protein
Length = 103
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 32/53 (60%)
Query: 1155 VSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQ 1207
+S++ + ASQ +++GD +L + GI+ + T+ A + ++ C S+ M +Q
Sbjct: 33 ISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQ 85
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human
Cdna, Kiaa1095
Length = 107
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 200 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNR 238
+H + G+++ KI AAKEG L + DR++ +N R
Sbjct: 34 NHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGR 72
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 824 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNR 862
+H + G+++ KI AAKEG L + DR++ +N R
Sbjct: 34 NHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGR 72
Score = 32.3 bits (72), Expect = 2.6, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 1245 RKCSNLGISLVGG----------NAVGIYVHS-VQSGSLGYSAGLRTGDRILEYNGTDL 1292
R +LG +++GG ++ GI+V V SG GL+ DRI+E NG DL
Sbjct: 16 RDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDL 74
Score = 30.8 bits (68), Expect = 6.9, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1150 SGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLV 1206
S G+FVS + + A++ G LQ+ D+++EV G ++ AT+ A + I + V
Sbjct: 40 SEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQV 97
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 204 TLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTV 240
T +G++I I P S A G L VGDR+LS+N + V
Sbjct: 34 TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDV 70
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 828 TLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTV 864
T +G++I I P S A G L VGDR+LS+N + V
Sbjct: 34 TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDV 70
>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase A
Type Ii Alpha And Pdzk1
pdb|3TMH|E Chain E, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase A
Type Ii Alpha And Pdzk1
pdb|3TMH|I Chain I, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase A
Type Ii Alpha And Pdzk1
Length = 87
Score = 32.7 bits (73), Expect = 1.9, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 1152 GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLV 1206
G F+ V + A GL+ D ++EV G+N+ Y+ ++ G ++T+LV
Sbjct: 28 GSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLV 82
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 32.7 bits (73), Expect = 1.9, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 808 GARSLVTTQLQLNNSYDHGLTL------------ESGLYICKISPGSLAAKEGSLAVGDR 855
G R +T ++ LN+S GL + + G+++ I G A+K+G L V D+
Sbjct: 1 GTREFLTFEVPLNDSGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQ 60
Query: 856 VLSINNRTVDGLSSAREGMALLSDS 880
++++N ++ G + +E M L S
Sbjct: 61 LIAVNGESLLG-KANQEAMETLRRS 84
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 32.7 bits (73), Expect = 1.9, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 1130 RRVHIDKS-VEPLGIQIQCLDSGG------VFVSTVSEHSLASQV-GLQVGDQLLEVCGI 1181
RRV + K+ LGI I+ GG + +S + + A Q L VGD +L V G
Sbjct: 2 RRVTVRKADAGGLGISIK----GGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGE 57
Query: 1182 NMRSATYQLAASVLRQCGNSITMLVQY 1208
++ SAT+ A L++ G + + V+Y
Sbjct: 58 DLSSATHDEAVQALKKTGKEVVLEVKY 84
>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 96
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 1152 GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLV 1206
G F+ V + A GL+ D ++EV G+N+ Y+ ++ G ++T+LV
Sbjct: 32 GSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLV 86
>pdb|1M5Z|A Chain A, The Pdz7 Of Glutamate Receptor Interacting Protein Binds To
Its Target Via A Novel Hydrophobic Surface Area
Length = 91
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 1124 PHPGELRRVHI--DKSVEPLGIQI-QCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCG 1180
P P EL +V + D +E G + L GV+V + GL+ D+LL+V
Sbjct: 2 PTPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNH 61
Query: 1181 INMRSATYQLAASVLRQCGNSITMLVQYSP 1210
+ R L ++ + GN + +++ +P
Sbjct: 62 VRTRDFDCCLVVPLIAESGNKLDLVISRNP 91
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
Length = 91
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 1152 GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLV 1206
G F+ V + A GL+ D ++EV G+N+ Y+ ++ G ++T+LV
Sbjct: 28 GSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLV 82
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine
Nucleotide Exchange Factor 11
Length = 93
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 1234 SGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT 1290
SG R ++I+ + G ++ G V V SV+ G AG++ GDRI++ NGT
Sbjct: 6 SGVQRCVIIQKDQ-HGFGFTVSGDRIV--LVQSVRPGGAAMKAGVKEGDRIIKVNGT 59
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 1130 RRVHIDKS-VEPLGIQIQCLDSGG------VFVSTVSEHSLASQV-GLQVGDQLLEVCGI 1181
RRV + K+ LGI I+ GG + +S + + A Q L VGD +L V G
Sbjct: 6 RRVTVRKADAGGLGISIK----GGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGE 61
Query: 1182 NMRSATYQLAASVLRQCGNSITMLVQY 1208
++ SAT+ A L++ G + + V+Y
Sbjct: 62 DLSSATHDEAVQALKKTGKEVVLEVKY 88
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 191 DGLQLNNSYDHGLTLESG-LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREG 249
+G L S G LE+ + + ++ P LA++EG++ G+ VLSIN +++ G ++ +
Sbjct: 25 EGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKG-TTHHDA 83
Query: 250 MALL 253
+A+L
Sbjct: 84 LAIL 87
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 833 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALL 877
+ + ++ P LA++EG++ G+ VLSIN +++ G ++ + +A+L
Sbjct: 44 ITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKG-TTHHDALAIL 87
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 192 GLQLNNSYDHGLTLE-SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 244
G+ ++ D T E +G+Y+ + PGS AA +G + D++L +++ V G++
Sbjct: 28 GISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMA 81
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 868
+G+Y+ + PGS AA +G + D++L +++ V G++
Sbjct: 44 TGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMA 81
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 32.3 bits (72), Expect = 2.2, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 808 GARSLVTTQLQLNNSYDHGLTL------------ESGLYICKISPGSLAAKEGSLAVGDR 855
G R +T ++ LN+S GL + + G+++ I G A+K+G L V D+
Sbjct: 4 GTREFLTFEVPLNDSGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQ 63
Query: 856 VLSINNRTVDGLSSAREGMALLSDS 880
++++N ++ G + +E M L S
Sbjct: 64 LIAVNGESLLG-KANQEAMETLRRS 87
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 32.3 bits (72), Expect = 2.3, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 1130 RRVHIDKS-VEPLGIQIQCLDSGG------VFVSTVSEHSLASQV-GLQVGDQLLEVCGI 1181
RRV + K+ LGI I+ GG + +S + + A Q L VGD +L V G
Sbjct: 2 RRVTVRKADAGGLGISIK----GGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGE 57
Query: 1182 NMRSATYQLAASVLRQCGNSITMLVQY 1208
++ SAT+ A L++ G + + V+Y
Sbjct: 58 DLSSATHDEAVQALKKTGKEVVLEVKY 84
>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|C Chain C, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|D Chain D, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|E Chain E, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|F Chain F, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
Length = 96
Score = 32.3 bits (72), Expect = 2.4, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 200 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 259
+ GL G ++ ++ PG L AK+ + GDR++++ +V+GL E ++ +
Sbjct: 23 EKGLDGRPGQFLWEVDPG-LPAKKAGMQAGDRLVAVAGESVEGLGH-EETVSRIQGQGSC 80
Query: 260 LTITTLKPTSLGEHS 274
+++T + P + E S
Sbjct: 81 VSLTVVDPEADRETS 95
Score = 32.3 bits (72), Expect = 2.4, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 824 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 883
+ GL G ++ ++ PG L AK+ + GDR++++ +V+GL E ++ +
Sbjct: 23 EKGLDGRPGQFLWEVDPG-LPAKKAGMQAGDRLVAVAGESVEGLGH-EETVSRIQGQGSC 80
Query: 884 LTITTLKPTSLGEHS 898
+++T + P + E S
Sbjct: 81 VSLTVVDPEADRETS 95
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 1262 IYVHSVQSGSLGYSAGLRTGDRILEYNG 1289
I+V V+ G + AGL TGDRI++ NG
Sbjct: 63 IFVKQVKEGGPAFEAGLCTGDRIIKVNG 90
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 32.0 bits (71), Expect = 2.8, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 1127 GELRRVHIDKSVEPLGIQIQCLD-----SGGVFVSTVSEHSLASQVG-LQVGDQLLEVCG 1180
G+ + + K E LG I D S ++V + A Q G L+ GD+L+EV G
Sbjct: 4 GKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNG 63
Query: 1181 INMRSATYQLAASVLR 1196
+++ + + S+LR
Sbjct: 64 VDLAGKSQEEVVSLLR 79
>pdb|1WFG|A Chain A, Pdz Domain Of Human Rim2b
Length = 131
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 1250 LGISLVGGNA-----VGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 1289
LG+ +VGG + ++ V+ GSL + G LR GD +LE+NG
Sbjct: 50 LGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNG 95
>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain
pdb|1KWA|B Chain B, Human CaskLIN-2 Pdz Domain
Length = 88
Score = 32.0 bits (71), Expect = 3.1, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 1130 RRVHIDKSV-EPLGIQIQCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSAT 1187
R V K+ EP+GI ++ + V+ + + + G L VGD++ E+ GI++ + T
Sbjct: 3 RLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQT 62
Query: 1188 YQLAASVLRQCGNSITMLV 1206
+ +LR+ SIT +
Sbjct: 63 VEQLQKMLREMRGSITFKI 81
>pdb|2JEE|A Chain A, Xray Structure Of E. Coli Yiiu
pdb|2JEE|B Chain B, Xray Structure Of E. Coli Yiiu
pdb|2JEE|C Chain C, Xray Structure Of E. Coli Yiiu
pdb|2JEE|D Chain D, Xray Structure Of E. Coli Yiiu
Length = 81
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 526 EKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLR 585
EKL + QA+ I L+ME +EL E +LS +E+ +A H R++ +E N L+
Sbjct: 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLS-------QEVQNAQHQREELERENNHLK 61
Query: 586 ER 587
E+
Sbjct: 62 EQ 63
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 32.0 bits (71), Expect = 3.3, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 1127 GELRRVHIDKSVEPLGIQIQCLD-----SGGVFVSTVSEHSLASQVG-LQVGDQLLEVCG 1180
G+ + + K E LG I D S ++V + A Q G L+ GD+L+EV G
Sbjct: 29 GKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNG 88
Query: 1181 INMRSATYQLAASVLR 1196
+++ + + S+LR
Sbjct: 89 VDLVGKSQEEVVSLLR 104
>pdb|3E17|A Chain A, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
pdb|3E17|B Chain B, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
Length = 88
Score = 32.0 bits (71), Expect = 3.3, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 200 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 244
++GL L S +++ +++ LA K+G+L GD +L IN + +S
Sbjct: 14 EYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMS 58
Score = 32.0 bits (71), Expect = 3.3, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 824 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 868
++GL L S +++ +++ LA K+G+L GD +L IN + +S
Sbjct: 14 EYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMS 58
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27)
Fused To The Gly-Gly Linker Followed By C-Terminal
(Eseskv) Of Girk3
Length = 109
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 1155 VSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLR 1196
VS V A + G++ GD++LEV G+N+ AT++ ++R
Sbjct: 47 VSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR 88
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27)
Fused To The C-Terminal Residues (Eseskv) Of Girk3
Length = 107
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 1155 VSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLR 1196
VS V A + G++ GD++LEV G+N+ AT++ ++R
Sbjct: 47 VSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR 88
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The
Carboxyl Tail Peptide Of Glur2
Length = 87
Score = 31.6 bits (70), Expect = 3.7, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 209 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDG 242
LYI ++ + AA +G++A GD + +N R++ G
Sbjct: 30 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKG 63
Score = 31.6 bits (70), Expect = 3.7, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 833 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDG 866
LYI ++ + AA +G++A GD + +N R++ G
Sbjct: 30 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKG 63
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1
(Casp Target)
Length = 114
Score = 31.6 bits (70), Expect = 3.7, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 209 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDG 242
LYI ++ + AA +G++A GD + +N R++ G
Sbjct: 52 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKG 85
Score = 31.6 bits (70), Expect = 3.7, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 833 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDG 866
LYI ++ + AA +G++A GD + +N R++ G
Sbjct: 52 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKG 85
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
Length = 125
Score = 31.6 bits (70), Expect = 3.8, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 209 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDG 242
LYI ++ + AA +G++A GD + +N R++ G
Sbjct: 47 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKG 80
Score = 31.6 bits (70), Expect = 3.8, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 833 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDG 866
LYI ++ + AA +G++A GD + +N R++ G
Sbjct: 47 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKG 80
>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
pdb|2PNT|B Chain B, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
Length = 98
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 210 YICKI---SPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 266
++C++ SP LA L GD + S+N V+G+ RE + ++ S +VL + TL
Sbjct: 40 FVCRVHESSPAQLAG----LTPGDTIASVNGLNVEGIRH-REIVDIIKASGNVLRLETLY 94
Query: 267 PTSL 270
++L
Sbjct: 95 SSTL 98
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 834 YICKI---SPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 890
++C++ SP LA L GD + S+N V+G+ RE + ++ S +VL + TL
Sbjct: 40 FVCRVHESSPAQLAG----LTPGDTIASVNGLNVEGIRH-REIVDIIKASGNVLRLETLY 94
Query: 891 PTSL 894
++L
Sbjct: 95 SSTL 98
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 1154 FVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYS 1209
FV V E S A GL GD + V G+N+ ++ +++ GN + + YS
Sbjct: 40 FVCRVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLYS 95
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27)
In Complex With The Eseskv Peptide Corresponding To The
C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27)
In Complex With The Eseskv Peptide Corresponding To The
C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27)
In Complex With The Eseskv Peptide Corresponding To The
C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27)
In Complex With The Eseskv Peptide Corresponding To The
C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27)
In Complex With The Eseskv Peptide Corresponding To The
C-Terminal Tail Of Girk3
Length = 101
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 1155 VSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLR 1196
VS V A + G++ GD++LEV G+N+ AT++ ++R
Sbjct: 47 VSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR 88
>pdb|2OSG|A Chain A, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
pdb|2OSG|B Chain B, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
Length = 83
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 200 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 244
++GL L S +++ +++ LA K+G+L GD +L IN + +S
Sbjct: 14 EYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMS 58
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 824 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 868
++GL L S +++ +++ LA K+G+L GD +L IN + +S
Sbjct: 14 EYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMS 58
>pdb|1P1Z|D Chain D, X-Ray Crystal Structure Of The Lectin-Like Natural
Killer Cell Receptor Ly-49c Bound To Its Mhc Class I
Ligand H-2kb
Length = 120
Score = 31.6 bits (70), Expect = 4.4, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 20 HVVVPIHKTQVEKESRMLQLHSVSHNYSHDSAIDTDLQEW 59
H VPI K + E E + LQ H + NY + D +EW
Sbjct: 31 HYSVPILKIEDEDELKFLQRHVIPENYWIGLSYDKKKKEW 70
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 209 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 266
+++ I+P AA +G + +GD +L INN+ + G S + A++ +P + + ++
Sbjct: 53 IFVVGINPEGPAAADGRMRIGDELLEINNQILYG-RSHQNASAIIKTAPSKVKLVFIR 109
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 833 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 890
+++ I+P AA +G + +GD +L INN+ + G S + A++ +P + + ++
Sbjct: 53 IFVVGINPEGPAAADGRMRIGDELLEINNQILYG-RSHQNASAIIKTAPSKVKLVFIR 109
Score = 30.4 bits (67), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 1126 PGELRRVHIDKSVEPLGIQIQC---LDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGI 1181
PGEL + ++K LG+ + +FV ++ A+ G +++GD+LLE+
Sbjct: 23 PGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQ 82
Query: 1182 NMRSATYQLAASVLRQCGNSITMLVQYSPDKYHEL 1216
+ ++Q A+++++ + + ++ + D +++
Sbjct: 83 ILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVNQM 117
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled 2
(Homologous To Drosophila Dsh)
Length = 100
Score = 31.2 bits (69), Expect = 4.6, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSD-----SPDVL 260
+ G+YI I G A +G + GD +L +N+ + +S+ + + +L D P VL
Sbjct: 32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSN-DDAVRVLRDIVHKPGPIVL 90
Query: 261 TITTLKPTSL 270
T+ TS+
Sbjct: 91 TVAKCWETSV 100
Score = 31.2 bits (69), Expect = 4.6, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSD-----SPDVL 884
+ G+YI I G A +G + GD +L +N+ + +S+ + + +L D P VL
Sbjct: 32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSN-DDAVRVLRDIVHKPGPIVL 90
Query: 885 TITTLKPTSL 894
T+ TS+
Sbjct: 91 TVAKCWETSV 100
>pdb|2DB5|A Chain A, Solution Structure Of The First Pdz Domain Of Inad-Like
Protein
Length = 128
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 209 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALL 253
+++ + PGS+A ++ L D++L+IN+ +D S ++ +ALL
Sbjct: 56 IFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALL 100
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 833 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALL 877
+++ + PGS+A ++ L D++L+IN+ +D S ++ +ALL
Sbjct: 56 IFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALL 100
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 217 GSLAAKEGSLAVGDRVLSINNRTVDGLSSA 246
G AA+ G L++GD+++SIN ++ GL A
Sbjct: 226 GGPAARSGKLSIGDQIMSINGTSLVGLPLA 255
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 841 GSLAAKEGSLAVGDRVLSINNRTVDGLSSA 870
G AA+ G L++GD+++SIN ++ GL A
Sbjct: 226 GGPAARSGKLSIGDQIMSINGTSLVGLPLA 255
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 31.2 bits (69), Expect = 4.9, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 1261 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 1292
G ++ V+ GS +A LR GDR++E NG ++
Sbjct: 26 GQFIRRVEPGSPAEAAALRAGDRLVEVNGVNV 57
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 31.2 bits (69), Expect = 5.4, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 209 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 244
+YI ++ PG K+G L GD+++SIN ++ G+S
Sbjct: 43 VYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVS 78
Score = 31.2 bits (69), Expect = 5.4, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 833 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 868
+YI ++ PG K+G L GD+++SIN ++ G+S
Sbjct: 43 VYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVS 78
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 30.8 bits (68), Expect = 6.2, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 1245 RKCSNLGISLVGGNAVG--IYV-HSVQSGSLGYSAGLRTGDRILEYNGT 1290
RK + G ++GGN G IY+ H V G+ LR+GD ++ +GT
Sbjct: 10 RKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGT 58
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 1154 FVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDK 1212
FV+ V E S A GL GD + V G+N+ ++ +++ GN + + Y ++
Sbjct: 40 FVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLYGTEE 98
>pdb|2WRH|I Chain I, Structure Of H1 Duck Albert Hemagglutinin With Human
Receptor
pdb|2WRH|K Chain K, Structure Of H1 Duck Albert Hemagglutinin With Human
Receptor
pdb|2WRH|M Chain M, Structure Of H1 Duck Albert Hemagglutinin With Human
Receptor
Length = 222
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 36/190 (18%), Positives = 78/190 (41%), Gaps = 24/190 (12%)
Query: 449 TAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAM 508
T I W +NE A Q+ ++A+ I T + + E+ N
Sbjct: 15 TGMIDGW-YGYHHQNEQGSGYAADQKSTQNAIDGI----------TSKVNSVIEKMNT-- 61
Query: 509 QEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQ---IETLKR 565
+++ + E +++ + +E L++ + + T E L+E+++TL + + L
Sbjct: 62 -QFTAVGKEFNNLERRIENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVRNLYE 120
Query: 566 EIASALHDRDKALKE-CNDLRERFGEFTAAKEECQREAFHARFEYAMRMGERDSSRKERN 624
++ S L + K + C F + +EC + ++Y E +R+E +
Sbjct: 121 KVKSQLRNNAKEIGNGC------FEFYHKCDDECMESVKNGTYDYPKYSEESKLNREEID 174
Query: 625 EVEAASMDLF 634
V+ SM ++
Sbjct: 175 GVKLESMGVY 184
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 30.4 bits (67), Expect = 7.8, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSD---SPDVLTI 262
+ G+YI I G A +G + GD +L +N+ + +S+ + + +L D P + +
Sbjct: 32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSN-DDAVRVLRDIVHKPGPIVL 90
Query: 263 TTLKPTSLGE 272
T K GE
Sbjct: 91 TVAKSGGGGE 100
Score = 30.4 bits (67), Expect = 7.8, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSD---SPDVLTI 886
+ G+YI I G A +G + GD +L +N+ + +S+ + + +L D P + +
Sbjct: 32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSN-DDAVRVLRDIVHKPGPIVL 90
Query: 887 TTLKPTSLGE 896
T K GE
Sbjct: 91 TVAKSGGGGE 100
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 30.4 bits (67), Expect = 9.0, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 796 TSALMVIRRRRVGARSLVTTQLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDR 855
TS +++ R+ G ++ + L N + G T+ I +I GS A + L VGDR
Sbjct: 11 TSDVVIHRKENEGFGFVIISSL---NRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDR 67
Query: 856 VLSINNRTVDGLSSA 870
+L++N +++ + A
Sbjct: 68 ILAVNGQSIINMPHA 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,053,813
Number of Sequences: 62578
Number of extensions: 1804586
Number of successful extensions: 4742
Number of sequences better than 100.0: 256
Number of HSP's better than 100.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 4047
Number of HSP's gapped (non-prelim): 752
length of query: 1659
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1547
effective length of database: 7,964,601
effective search space: 12321237747
effective search space used: 12321237747
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)