Query psy3835
Match_columns 1659
No_of_seqs 898 out of 4918
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 18:37:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3835.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3835hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0609|consensus 100.0 2.9E-68 6.3E-73 618.9 30.1 395 1235-1658 121-539 (542)
2 KOG3580|consensus 100.0 1E-65 2.3E-70 586.3 43.1 478 1129-1657 199-788 (1027)
3 KOG0708|consensus 100.0 9.2E-47 2E-51 426.9 22.1 337 1286-1658 2-359 (359)
4 KOG3209|consensus 100.0 6.8E-35 1.5E-39 341.7 33.6 358 738-1318 495-982 (984)
5 KOG3209|consensus 100.0 8E-34 1.7E-38 332.8 35.8 417 738-1320 355-839 (984)
6 COG0194 Gmk Guanylate kinase [ 100.0 9.3E-35 2E-39 301.8 18.3 166 1473-1650 3-185 (191)
7 smart00072 GuKc Guanylate kina 100.0 6.5E-30 1.4E-34 281.1 19.9 166 1473-1648 1-183 (184)
8 PRK14737 gmk guanylate kinase; 100.0 9E-30 2E-34 278.1 20.0 164 1473-1647 3-184 (186)
9 PLN02772 guanylate kinase 100.0 9.3E-30 2E-34 297.7 19.9 178 1462-1648 120-319 (398)
10 PF00625 Guanylate_kin: Guanyl 100.0 1.3E-29 2.7E-34 278.9 19.8 163 1474-1648 2-183 (183)
11 KOG3580|consensus 100.0 4.5E-27 9.7E-32 270.5 25.3 155 738-893 20-280 (1027)
12 KOG0707|consensus 99.9 2.5E-25 5.5E-30 238.9 10.6 176 1465-1650 28-224 (231)
13 PRK14738 gmk guanylate kinase; 99.9 1.6E-21 3.4E-26 218.1 20.2 167 1472-1648 11-195 (206)
14 KOG0996|consensus 99.8 6.9E-17 1.5E-21 202.4 48.6 317 220-570 191-533 (1293)
15 TIGR03263 guanyl_kin guanylate 99.8 3.2E-18 7E-23 188.2 19.8 161 1475-1646 2-179 (180)
16 cd00071 GMPK Guanosine monopho 99.7 1.1E-17 2.5E-22 174.1 14.5 119 1476-1641 1-136 (137)
17 PRK00300 gmk guanylate kinase; 99.7 4.8E-17 1E-21 182.9 19.5 166 1473-1649 4-186 (205)
18 KOG3812|consensus 99.6 6.6E-15 1.4E-19 161.6 13.9 274 1331-1647 57-353 (475)
19 COG1196 Smc Chromosome segrega 99.6 9.8E-12 2.1E-16 172.4 48.2 356 245-601 621-992 (1163)
20 COG1196 Smc Chromosome segrega 99.6 5.6E-11 1.2E-15 165.0 52.5 251 189-478 78-341 (1163)
21 TIGR02169 SMC_prok_A chromosom 99.5 9.8E-11 2.1E-15 166.2 51.8 189 413-601 800-1001(1164)
22 TIGR02168 SMC_prok_B chromosom 99.5 3.6E-11 7.8E-16 171.0 46.4 238 245-487 630-872 (1179)
23 TIGR02169 SMC_prok_A chromosom 99.5 1.2E-10 2.7E-15 165.2 51.1 22 232-257 109-130 (1164)
24 KOG0161|consensus 99.5 3.8E-10 8.1E-15 154.5 50.1 32 286-317 893-924 (1930)
25 TIGR02168 SMC_prok_B chromosom 99.5 2.6E-10 5.6E-15 162.3 51.1 191 297-502 168-358 (1179)
26 KOG0161|consensus 99.5 2.5E-09 5.4E-14 146.6 55.0 310 277-591 835-1144(1930)
27 KOG0976|consensus 99.5 4E-09 8.7E-14 127.3 48.6 145 209-353 5-165 (1265)
28 PRK10078 ribose 1,5-bisphospho 99.4 7.8E-13 1.7E-17 146.0 13.8 164 1475-1652 3-181 (186)
29 KOG0250|consensus 99.4 3.8E-08 8.2E-13 126.0 54.6 65 550-614 660-724 (1074)
30 TIGR02037 degP_htrA_DO peripla 99.4 4.1E-12 8.9E-17 158.5 16.3 154 1150-1320 256-422 (428)
31 PRK03918 chromosome segregatio 99.3 3E-08 6.5E-13 136.3 53.0 6 274-279 156-161 (880)
32 KOG3605|consensus 99.3 3.2E-12 6.9E-17 151.7 10.4 142 738-886 657-809 (829)
33 TIGR02322 phosphon_PhnN phosph 99.3 7.1E-11 1.5E-15 129.8 17.7 159 1475-1647 2-178 (179)
34 KOG4643|consensus 99.3 4.1E-07 8.9E-12 114.0 51.5 78 274-351 157-234 (1195)
35 KOG0996|consensus 99.3 7.4E-08 1.6E-12 122.8 45.6 352 245-600 723-1120(1293)
36 KOG0964|consensus 99.3 2.9E-08 6.3E-13 123.6 40.7 328 245-594 117-468 (1200)
37 PRK10942 serine endoprotease; 99.3 8.1E-11 1.8E-15 147.0 18.8 151 1150-1319 310-465 (473)
38 PF07888 CALCOCO1: Calcium bin 99.3 3.3E-07 7E-12 112.1 48.4 50 300-349 142-191 (546)
39 TIGR00606 rad50 rad50. This fa 99.3 2.7E-07 5.9E-12 130.3 55.6 42 624-665 1050-1091(1311)
40 PRK10779 zinc metallopeptidase 99.3 4.6E-11 1E-15 149.3 15.9 152 1153-1320 128-280 (449)
41 PRK03918 chromosome segregatio 99.3 2.9E-07 6.2E-12 126.7 54.0 6 78-83 44-49 (880)
42 PRK10139 serine endoprotease; 99.2 8.9E-11 1.9E-15 146.0 16.7 156 1150-1320 289-448 (455)
43 PF10174 Cast: RIM-binding pro 99.2 3.6E-07 7.9E-12 117.8 49.1 254 412-665 274-537 (775)
44 KOG3605|consensus 99.2 1.9E-11 4.2E-16 145.1 9.6 160 1128-1317 645-813 (829)
45 PF05701 WEMBL: Weak chloropla 99.2 2E-06 4.4E-11 109.2 55.3 134 281-414 28-161 (522)
46 TIGR00606 rad50 rad50. This fa 99.2 1.7E-07 3.7E-12 132.3 50.2 44 617-660 1050-1093(1311)
47 KOG0250|consensus 99.2 8.9E-07 1.9E-11 113.8 50.6 120 482-601 662-798 (1074)
48 PF10174 Cast: RIM-binding pro 99.2 9.9E-07 2.2E-11 113.9 51.4 70 287-356 273-342 (775)
49 KOG0964|consensus 99.2 1.6E-06 3.6E-11 108.5 48.8 158 376-533 328-491 (1200)
50 PF00595 PDZ: PDZ domain (Also 99.2 1.5E-10 3.4E-15 109.2 11.1 77 1131-1207 1-81 (81)
51 KOG0976|consensus 99.2 1.5E-06 3.3E-11 105.7 46.9 111 474-584 330-443 (1265)
52 PRK01156 chromosome segregatio 99.2 1.9E-06 4.2E-11 118.3 55.4 10 231-240 97-106 (895)
53 PRK01156 chromosome segregatio 99.2 2.4E-06 5.1E-11 117.5 55.6 6 118-123 99-104 (895)
54 PF05701 WEMBL: Weak chloropla 99.2 2.4E-06 5.3E-11 108.5 50.8 35 631-665 382-416 (522)
55 KOG4643|consensus 99.1 2.6E-06 5.6E-11 107.1 48.8 46 285-330 182-227 (1195)
56 KOG3550|consensus 99.1 7.4E-11 1.6E-15 115.7 7.2 88 1127-1214 89-179 (207)
57 KOG0933|consensus 99.1 8.5E-07 1.8E-11 111.5 44.0 110 457-566 826-935 (1174)
58 PF00595 PDZ: PDZ domain (Also 99.1 1.8E-10 3.9E-15 108.8 9.2 77 1240-1316 2-81 (81)
59 PRK04863 mukB cell division pr 99.1 1.3E-06 2.9E-11 120.9 49.0 54 290-344 289-342 (1486)
60 PF12128 DUF3584: Protein of u 99.1 5.8E-06 1.3E-10 115.6 54.7 58 553-610 602-659 (1201)
61 KOG4674|consensus 99.1 4.5E-06 9.7E-11 113.4 50.7 43 623-665 435-477 (1822)
62 KOG3550|consensus 99.1 2.4E-10 5.2E-15 112.1 7.9 86 1234-1320 88-176 (207)
63 KOG0933|consensus 99.1 2.8E-06 6E-11 107.1 45.1 35 389-423 747-781 (1174)
64 KOG0971|consensus 99.1 4.5E-06 9.7E-11 103.4 45.4 43 53-102 28-72 (1243)
65 TIGR00054 RIP metalloprotease 99.1 1E-09 2.2E-14 135.8 14.4 135 1151-1320 128-262 (420)
66 KOG0612|consensus 99.0 6.1E-06 1.3E-10 106.4 46.7 12 94-105 228-239 (1317)
67 PF05483 SCP-1: Synaptonemal c 99.0 4.6E-05 9.9E-10 93.1 51.5 51 275-325 228-278 (786)
68 KOG4674|consensus 99.0 2.4E-05 5.2E-10 106.6 54.1 56 300-355 653-708 (1822)
69 PRK08356 hypothetical protein; 99.0 5.9E-10 1.3E-14 124.1 7.7 159 1475-1648 6-193 (195)
70 PRK04778 septation ring format 99.0 4.1E-06 8.8E-11 108.2 43.7 153 457-610 352-507 (569)
71 PRK04778 septation ring format 99.0 2.7E-05 6E-10 100.6 50.6 55 300-354 104-158 (569)
72 KOG0971|consensus 99.0 4E-05 8.6E-10 95.3 48.4 32 280-311 217-248 (1243)
73 PF12128 DUF3584: Protein of u 99.0 7.7E-05 1.7E-09 104.6 58.4 62 484-545 472-533 (1201)
74 PF05483 SCP-1: Synaptonemal c 99.0 0.00013 2.8E-09 89.3 51.6 91 575-665 671-762 (786)
75 KOG0994|consensus 99.0 6.3E-06 1.4E-10 104.0 41.4 53 515-567 1604-1656(1758)
76 KOG0994|consensus 98.9 1.2E-05 2.7E-10 101.5 41.8 32 285-316 1420-1451(1758)
77 KOG4673|consensus 98.9 0.00027 5.9E-09 85.8 51.4 27 285-311 344-370 (961)
78 COG3709 Uncharacterized compon 98.9 3.6E-08 7.8E-13 100.2 15.8 163 1473-1648 4-183 (192)
79 KOG0612|consensus 98.9 3.3E-05 7.2E-10 99.9 45.8 12 781-792 923-934 (1317)
80 KOG0977|consensus 98.9 6.4E-06 1.4E-10 101.0 37.4 31 287-317 42-72 (546)
81 KOG0999|consensus 98.9 0.00023 5E-09 84.5 48.0 185 284-479 5-189 (772)
82 PF00261 Tropomyosin: Tropomyo 98.9 1.4E-06 3E-11 99.6 30.0 201 381-595 27-227 (237)
83 PF00261 Tropomyosin: Tropomyo 98.9 2.1E-06 4.5E-11 98.2 31.2 187 302-507 2-188 (237)
84 KOG0977|consensus 98.9 7.2E-06 1.6E-10 100.6 37.0 76 372-447 102-177 (546)
85 TIGR02037 degP_htrA_DO peripla 98.9 1.9E-08 4E-13 125.9 15.3 128 755-892 261-421 (428)
86 KOG4673|consensus 98.9 0.00057 1.2E-08 83.1 51.4 79 371-449 404-484 (961)
87 KOG3553|consensus 98.9 5.3E-09 1.1E-13 95.8 7.4 62 76-137 36-105 (124)
88 PRK10779 zinc metallopeptidase 98.9 1.6E-08 3.5E-13 126.6 14.6 132 755-892 130-279 (449)
89 PF00038 Filament: Intermediat 98.9 2.5E-05 5.3E-10 94.0 41.4 37 287-323 4-40 (312)
90 PRK10139 serine endoprotease; 98.9 2E-08 4.4E-13 125.1 15.1 128 755-892 294-447 (455)
91 PF06160 EzrA: Septation ring 98.8 0.00015 3.2E-09 93.4 48.6 47 619-665 442-488 (560)
92 PRK10942 serine endoprotease; 98.8 3.2E-08 7E-13 123.9 14.6 128 755-892 315-465 (473)
93 PRK04863 mukB cell division pr 98.8 8.9E-05 1.9E-09 103.3 49.0 8 77-84 104-111 (1486)
94 PF06160 EzrA: Septation ring 98.8 0.00017 3.8E-09 92.7 48.0 56 300-355 100-155 (560)
95 PF15070 GOLGA2L5: Putative go 98.8 0.00017 3.7E-09 92.1 46.3 31 573-603 280-310 (617)
96 PF01576 Myosin_tail_1: Myosin 98.7 1.6E-09 3.4E-14 144.5 0.0 20 280-299 131-150 (859)
97 COG0419 SbcC ATPase involved i 98.7 0.00093 2E-08 91.8 55.6 12 869-880 858-869 (908)
98 KOG0018|consensus 98.7 0.0001 2.2E-09 94.6 41.2 34 232-269 98-144 (1141)
99 PF01576 Myosin_tail_1: Myosin 98.7 2.5E-09 5.3E-14 142.6 0.0 31 496-526 329-359 (859)
100 KOG0995|consensus 98.7 0.00053 1.2E-08 83.4 44.3 67 383-449 259-325 (581)
101 PF09730 BicD: Microtubule-ass 98.7 0.00057 1.2E-08 87.6 46.9 57 300-356 33-89 (717)
102 smart00228 PDZ Domain present 98.7 1.7E-07 3.7E-12 89.2 11.9 80 1130-1209 3-84 (85)
103 KOG0018|consensus 98.7 0.00032 6.9E-09 90.2 43.5 43 556-601 934-976 (1141)
104 KOG3551|consensus 98.7 6.4E-08 1.4E-12 109.5 9.6 82 1128-1209 84-169 (506)
105 KOG3549|consensus 98.7 4E-08 8.7E-13 109.2 7.9 87 1122-1208 48-138 (505)
106 COG0419 SbcC ATPase involved i 98.7 0.0011 2.3E-08 91.1 52.7 23 289-311 279-301 (908)
107 cd00992 PDZ_signaling PDZ doma 98.7 1.4E-07 3.1E-12 89.1 10.8 77 1130-1206 2-81 (82)
108 KOG0995|consensus 98.6 0.0011 2.3E-08 80.8 44.9 15 382-396 307-321 (581)
109 cd00136 PDZ PDZ domain, also c 98.6 1.4E-07 3E-12 86.4 9.3 67 1140-1206 2-69 (70)
110 cd00992 PDZ_signaling PDZ doma 98.6 2.3E-07 4.9E-12 87.8 10.6 78 1238-1315 2-81 (82)
111 PF09730 BicD: Microtubule-ass 98.6 0.00096 2.1E-08 85.6 45.6 55 291-345 31-85 (717)
112 KOG0978|consensus 98.6 0.00055 1.2E-08 86.6 42.7 116 479-594 466-581 (698)
113 PF00038 Filament: Intermediat 98.6 0.00059 1.3E-08 82.1 41.6 33 553-585 218-250 (312)
114 TIGR00054 RIP metalloprotease 98.6 2.2E-07 4.9E-12 115.2 12.2 122 755-892 132-261 (420)
115 KOG0946|consensus 98.6 3.3E-05 7.1E-10 95.7 30.1 39 318-356 674-712 (970)
116 KOG1029|consensus 98.6 0.00051 1.1E-08 84.5 39.6 54 1333-1397 1054-1107(1118)
117 PF07111 HCR: Alpha helical co 98.6 0.007 1.5E-07 75.4 55.2 39 376-414 242-280 (739)
118 KOG1029|consensus 98.6 0.00029 6.4E-09 86.6 37.2 54 1335-1394 982-1035(1118)
119 KOG4593|consensus 98.6 0.002 4.2E-08 80.1 44.7 22 201-222 23-44 (716)
120 PF15070 GOLGA2L5: Putative go 98.6 0.0021 4.6E-08 82.3 47.0 29 313-341 27-55 (617)
121 PHA02562 46 endonuclease subun 98.6 0.00015 3.2E-09 94.9 38.1 23 233-255 99-121 (562)
122 PHA02562 46 endonuclease subun 98.6 4E-05 8.7E-10 100.2 32.7 23 247-269 117-139 (562)
123 PF13180 PDZ_2: PDZ domain; PD 98.6 1.5E-07 3.4E-12 89.0 7.4 73 1140-1212 2-75 (82)
124 smart00228 PDZ Domain present 98.6 5.7E-07 1.2E-11 85.5 11.4 79 1239-1318 4-84 (85)
125 KOG0946|consensus 98.5 7.9E-05 1.7E-09 92.4 31.6 18 647-664 923-940 (970)
126 KOG1892|consensus 98.5 8.7E-07 1.9E-11 109.4 14.8 79 814-893 934-1021(1629)
127 PF09728 Taxilin: Myosin-like 98.5 0.0013 2.8E-08 77.8 41.0 61 295-355 23-83 (309)
128 cd00136 PDZ PDZ domain, also c 98.5 4.1E-07 9E-12 83.2 9.3 67 1249-1315 2-69 (70)
129 KOG3549|consensus 98.5 3.9E-07 8.5E-12 101.6 10.7 83 809-892 52-140 (505)
130 KOG3551|consensus 98.5 1.3E-07 2.8E-12 107.0 6.9 83 1236-1318 84-169 (506)
131 KOG3553|consensus 98.5 1.1E-07 2.4E-12 87.3 5.0 68 1140-1208 36-115 (124)
132 PRK10929 putative mechanosensi 98.5 0.0037 8.1E-08 84.6 48.5 82 322-406 58-139 (1109)
133 PF14915 CCDC144C: CCDC144C pr 98.5 0.0053 1.2E-07 69.4 42.0 224 371-594 65-300 (305)
134 PF13180 PDZ_2: PDZ domain; PD 98.5 3.7E-07 8.1E-12 86.4 7.9 72 1249-1320 2-74 (82)
135 COG4477 EzrA Negative regulato 98.5 0.0039 8.5E-08 75.3 42.7 80 522-601 315-397 (570)
136 KOG0999|consensus 98.5 0.0041 8.9E-08 74.3 42.1 39 627-665 294-334 (772)
137 KOG1892|consensus 98.5 1.6E-07 3.5E-12 115.7 5.8 66 206-272 959-1024(1629)
138 KOG4593|consensus 98.4 0.015 3.3E-07 72.6 51.8 56 372-427 140-195 (716)
139 KOG0963|consensus 98.4 0.01 2.2E-07 73.2 45.7 51 555-606 307-357 (629)
140 PRK11637 AmiB activator; Provi 98.4 0.00022 4.8E-09 89.4 32.8 11 850-860 389-399 (428)
141 PF05667 DUF812: Protein of un 98.4 0.00096 2.1E-08 85.1 38.1 99 298-398 325-423 (594)
142 PF09728 Taxilin: Myosin-like 98.4 0.0074 1.6E-07 71.5 43.0 27 291-317 26-52 (309)
143 PF05667 DUF812: Protein of un 98.4 0.00073 1.6E-08 86.1 36.7 59 377-435 322-380 (594)
144 KOG0978|consensus 98.4 0.023 4.9E-07 72.4 48.9 17 646-662 605-621 (698)
145 KOG0962|consensus 98.4 0.0092 2E-07 79.9 47.3 36 630-665 1043-1078(1294)
146 PF07111 HCR: Alpha helical co 98.4 0.022 4.7E-07 71.3 50.9 11 82-92 40-50 (739)
147 KOG0980|consensus 98.4 0.003 6.4E-08 79.9 39.8 124 378-501 412-535 (980)
148 PRK11281 hypothetical protein; 98.4 0.0098 2.1E-07 81.1 48.3 106 322-427 73-179 (1113)
149 PF09726 Macoilin: Transmembra 98.4 0.00031 6.8E-09 91.1 32.8 58 381-438 458-515 (697)
150 KOG0980|consensus 98.4 0.0014 2.9E-08 82.8 36.2 19 257-275 308-326 (980)
151 KOG1421|consensus 98.3 0.00021 4.5E-09 87.1 28.2 127 755-891 307-460 (955)
152 PF14915 CCDC144C: CCDC144C pr 98.3 0.0082 1.8E-07 67.9 38.3 71 284-357 28-98 (305)
153 PF09726 Macoilin: Transmembra 98.3 0.00038 8.3E-09 90.4 32.1 70 380-449 422-498 (697)
154 KOG0963|consensus 98.3 0.0085 1.8E-07 73.9 40.8 14 579-592 344-357 (629)
155 COG5185 HEC1 Protein involved 98.3 0.016 3.5E-07 68.4 41.1 68 382-449 294-361 (622)
156 cd00988 PDZ_CTP_protease PDZ d 98.3 3.3E-06 7.1E-11 80.5 9.5 70 1139-1209 2-72 (85)
157 COG4372 Uncharacterized protei 98.3 0.0025 5.5E-08 73.1 33.2 44 436-479 134-177 (499)
158 KOG3571|consensus 98.3 1.1E-06 2.3E-11 103.2 6.2 73 193-266 263-338 (626)
159 KOG1003|consensus 98.2 0.0015 3.3E-08 68.9 28.1 147 449-595 49-195 (205)
160 COG5185 HEC1 Protein involved 98.2 0.012 2.5E-07 69.5 38.1 29 328-356 294-322 (622)
161 TIGR03185 DNA_S_dndD DNA sulfu 98.2 0.0037 8E-08 82.7 39.5 41 316-356 210-250 (650)
162 KOG3571|consensus 98.2 1.8E-06 4E-11 101.2 7.1 84 47-136 236-323 (626)
163 COG4372 Uncharacterized protei 98.2 0.0027 5.8E-08 72.9 31.4 15 790-804 321-335 (499)
164 KOG0962|consensus 98.2 0.021 4.6E-07 76.6 44.2 40 478-517 889-928 (1294)
165 PF05622 HOOK: HOOK protein; 98.2 3.8E-07 8.2E-12 120.9 0.0 37 531-567 489-525 (713)
166 COG4477 EzrA Negative regulato 98.1 0.052 1.1E-06 66.0 44.6 30 558-587 396-425 (570)
167 PRK10929 putative mechanosensi 98.1 0.0098 2.1E-07 80.7 40.0 39 1353-1396 936-977 (1109)
168 KOG3651|consensus 98.1 5.6E-06 1.2E-10 91.0 7.8 77 814-891 7-89 (429)
169 PRK11281 hypothetical protein; 98.1 0.046 9.9E-07 74.8 45.2 39 1353-1396 939-980 (1113)
170 PF05557 MAD: Mitotic checkpoi 98.1 1.9E-06 4.2E-11 114.6 4.2 15 651-665 505-519 (722)
171 COG4942 Membrane-bound metallo 98.1 0.0095 2.1E-07 71.5 34.2 22 557-578 223-244 (420)
172 cd00988 PDZ_CTP_protease PDZ d 98.1 1.4E-05 3E-10 76.2 8.8 69 1249-1318 3-72 (85)
173 KOG1003|consensus 98.1 0.0064 1.4E-07 64.4 28.4 91 504-594 111-201 (205)
174 KOG0979|consensus 98.0 0.12 2.7E-06 67.1 47.9 105 371-475 250-354 (1072)
175 PF05622 HOOK: HOOK protein; 98.0 9.3E-07 2E-11 117.3 0.0 56 390-445 363-418 (713)
176 PF04849 HAP1_N: HAP1 N-termin 98.0 0.003 6.6E-08 72.7 27.8 56 301-356 69-124 (306)
177 PF04849 HAP1_N: HAP1 N-termin 98.0 0.0059 1.3E-07 70.4 29.7 91 515-605 212-302 (306)
178 PF05557 MAD: Mitotic checkpoi 98.0 3.2E-06 7E-11 112.5 4.3 17 649-665 510-526 (722)
179 PF14662 CCDC155: Coiled-coil 98.0 0.0077 1.7E-07 64.2 27.8 21 321-341 7-27 (193)
180 PF09755 DUF2046: Uncharacteri 98.0 0.064 1.4E-06 61.9 38.6 46 290-335 23-68 (310)
181 KOG3552|consensus 98.0 5.9E-06 1.3E-10 102.7 5.5 76 814-892 58-133 (1298)
182 cd00991 PDZ_archaeal_metallopr 98.0 1.8E-05 3.9E-10 74.3 7.5 60 1150-1211 9-70 (79)
183 PRK10246 exonuclease subunit S 98.0 0.27 5.9E-06 68.7 55.4 12 868-879 991-1002(1047)
184 PF14662 CCDC155: Coiled-coil 98.0 0.011 2.3E-07 63.1 28.5 10 523-532 179-188 (193)
185 cd00991 PDZ_archaeal_metallopr 98.0 2.1E-05 4.6E-10 73.8 7.6 61 1260-1320 10-70 (79)
186 KOG1937|consensus 97.9 0.094 2E-06 62.2 38.0 21 76-96 65-85 (521)
187 cd00227 CPT Chloramphenicol (C 97.9 2.6E-05 5.6E-10 85.4 8.8 150 1474-1645 2-174 (175)
188 PF00018 SH3_1: SH3 domain; I 97.9 6.8E-06 1.5E-10 69.0 2.5 48 1336-1392 1-48 (48)
189 cd00990 PDZ_glycyl_aminopeptid 97.9 4.8E-05 1E-09 71.5 8.5 68 1140-1211 2-69 (80)
190 PF07653 SH3_2: Variant SH3 do 97.8 1.2E-05 2.6E-10 69.7 3.4 51 1334-1395 1-52 (55)
191 PF09789 DUF2353: Uncharacteri 97.8 0.04 8.7E-07 64.4 32.9 42 376-417 9-50 (319)
192 cd00990 PDZ_glycyl_aminopeptid 97.8 6.1E-05 1.3E-09 70.8 8.4 66 1250-1319 3-68 (80)
193 KOG3606|consensus 97.8 3.5E-05 7.5E-10 83.9 7.0 83 1125-1207 155-251 (358)
194 COG1579 Zn-ribbon protein, pos 97.8 0.0064 1.4E-07 68.1 24.9 10 576-585 175-184 (239)
195 cd00987 PDZ_serine_protease PD 97.8 6.3E-05 1.4E-09 72.4 8.3 61 1260-1320 24-84 (90)
196 PRK04040 adenylate kinase; Pro 97.8 0.00015 3.4E-09 79.9 12.2 154 1475-1645 3-187 (188)
197 PF13514 AAA_27: AAA domain 97.8 0.53 1.2E-05 66.6 50.3 38 389-426 672-709 (1111)
198 cd00989 PDZ_metalloprotease PD 97.8 9E-05 1.9E-09 69.5 8.9 68 1141-1211 3-71 (79)
199 PF13514 AAA_27: AAA domain 97.8 0.55 1.2E-05 66.4 50.2 31 635-665 896-926 (1111)
200 KOG3651|consensus 97.8 7E-05 1.5E-09 82.6 8.6 78 1130-1207 6-87 (429)
201 cd00987 PDZ_serine_protease PD 97.7 8E-05 1.7E-09 71.7 7.8 62 1150-1211 23-84 (90)
202 KOG0979|consensus 97.7 0.036 7.7E-07 71.8 32.5 41 316-356 182-222 (1072)
203 KOG4371|consensus 97.7 7.8E-05 1.7E-09 94.4 8.9 177 1132-1318 1151-1329(1332)
204 cd00986 PDZ_LON_protease PDZ d 97.7 0.0001 2.2E-09 69.2 7.7 60 1260-1320 8-67 (79)
205 PF15066 CAGE1: Cancer-associa 97.7 0.035 7.6E-07 65.9 29.0 85 461-545 384-468 (527)
206 TIGR00634 recN DNA repair prot 97.7 0.0059 1.3E-07 79.3 25.7 36 230-269 106-145 (563)
207 KOG4371|consensus 97.7 7.1E-05 1.5E-09 94.7 7.5 130 761-891 1183-1329(1332)
208 cd00986 PDZ_LON_protease PDZ d 97.7 0.00012 2.6E-09 68.7 7.3 58 1151-1211 8-67 (79)
209 PF08317 Spc7: Spc7 kinetochor 97.7 0.043 9.4E-07 66.1 31.0 49 376-424 149-197 (325)
210 cd00989 PDZ_metalloprotease PD 97.6 0.00015 3.3E-09 67.9 7.9 59 1259-1319 11-70 (79)
211 PF12718 Tropomyosin_1: Tropom 97.6 0.0078 1.7E-07 63.0 21.1 40 389-428 6-45 (143)
212 KOG3542|consensus 97.6 7.5E-05 1.6E-09 89.8 6.3 89 1234-1323 533-624 (1283)
213 PF14604 SH3_9: Variant SH3 do 97.6 4.3E-05 9.3E-10 64.3 3.2 47 1337-1394 1-47 (49)
214 PRK10869 recombination and rep 97.6 0.011 2.5E-07 76.1 26.6 38 231-269 103-141 (553)
215 PF12718 Tropomyosin_1: Tropom 97.6 0.01 2.2E-07 62.1 21.3 26 565-590 115-140 (143)
216 PLN00049 carboxyl-terminal pro 97.6 0.00019 4.1E-09 88.5 10.0 73 1139-1211 85-163 (389)
217 KOG3606|consensus 97.6 0.00011 2.4E-09 80.1 6.8 82 190-273 170-258 (358)
218 COG0793 Prc Periplasmic protea 97.6 0.00024 5.3E-09 87.3 10.7 73 1138-1210 99-172 (406)
219 COG3883 Uncharacterized protei 97.6 0.11 2.3E-06 59.1 30.2 33 305-337 49-81 (265)
220 PRK09039 hypothetical protein; 97.6 0.011 2.5E-07 71.2 24.4 51 383-433 46-96 (343)
221 KOG3552|consensus 97.6 6.9E-05 1.5E-09 93.6 5.6 76 189-267 57-132 (1298)
222 PRK09039 hypothetical protein; 97.6 0.0076 1.7E-07 72.7 22.8 46 525-570 139-184 (343)
223 KOG0243|consensus 97.6 0.73 1.6E-05 61.3 45.8 58 282-339 406-472 (1041)
224 KOG3542|consensus 97.6 0.00011 2.4E-09 88.4 6.7 81 1127-1208 534-618 (1283)
225 PF15619 Lebercilin: Ciliary p 97.6 0.055 1.2E-06 59.6 27.0 88 383-470 12-99 (194)
226 smart00787 Spc7 Spc7 kinetocho 97.5 0.091 2E-06 62.3 30.6 50 375-424 143-192 (312)
227 TIGR02680 conserved hypothetic 97.5 0.56 1.2E-05 67.2 43.9 28 226-257 129-156 (1353)
228 KOG2129|consensus 97.5 0.094 2E-06 61.2 28.9 36 288-323 44-79 (552)
229 TIGR00225 prc C-terminal pepti 97.5 0.00026 5.7E-09 85.8 9.5 72 1139-1211 51-123 (334)
230 PF15066 CAGE1: Cancer-associa 97.5 0.12 2.7E-06 61.5 30.0 56 413-468 392-447 (527)
231 PRK10246 exonuclease subunit S 97.5 1.3 2.8E-05 62.1 57.1 10 157-166 167-176 (1047)
232 KOG1937|consensus 97.5 0.45 9.8E-06 56.7 36.7 21 197-218 73-93 (521)
233 PF15619 Lebercilin: Ciliary p 97.4 0.099 2.1E-06 57.6 27.1 66 518-586 120-185 (194)
234 PF08317 Spc7: Spc7 kinetochor 97.4 0.16 3.4E-06 61.3 31.6 8 556-563 281-288 (325)
235 PF09755 DUF2046: Uncharacteri 97.4 0.44 9.5E-06 55.2 37.5 26 556-581 227-252 (310)
236 COG0793 Prc Periplasmic protea 97.4 0.00036 7.9E-09 85.8 8.8 71 1248-1318 100-171 (406)
237 KOG0609|consensus 97.4 0.00041 8.9E-09 83.9 8.8 84 1126-1209 120-205 (542)
238 PF09787 Golgin_A5: Golgin sub 97.4 0.26 5.7E-06 63.2 34.7 35 392-426 209-243 (511)
239 TIGR03279 cyano_FeS_chp putati 97.4 0.00099 2.1E-08 80.7 11.7 133 1155-1317 2-148 (433)
240 PLN00049 carboxyl-terminal pro 97.4 0.00046 1E-08 85.1 9.1 72 1249-1320 86-163 (389)
241 PF05911 DUF869: Plant protein 97.4 0.085 1.9E-06 69.1 29.6 50 469-518 661-710 (769)
242 PF04495 GRASP55_65: GRASP55/6 97.3 0.0036 7.8E-08 64.9 13.8 105 1128-1257 10-130 (138)
243 KOG4792|consensus 97.3 0.00026 5.7E-09 75.4 5.4 59 1331-1399 123-181 (293)
244 PF09789 DUF2353: Uncharacteri 97.3 0.087 1.9E-06 61.7 26.2 7 585-591 202-208 (319)
245 PF13851 GAS: Growth-arrest sp 97.3 0.19 4.2E-06 55.9 28.0 27 495-521 100-126 (201)
246 KOG1850|consensus 97.3 0.53 1.2E-05 53.6 38.9 29 292-320 23-51 (391)
247 KOG1850|consensus 97.3 0.54 1.2E-05 53.5 45.7 58 528-585 220-277 (391)
248 TIGR00225 prc C-terminal pepti 97.3 0.00061 1.3E-08 82.6 8.6 70 1249-1319 52-122 (334)
249 KOG4809|consensus 97.3 0.89 1.9E-05 55.5 38.9 31 441-471 375-405 (654)
250 TIGR01713 typeII_sec_gspC gene 97.2 0.00073 1.6E-08 78.0 8.4 71 1250-1320 179-251 (259)
251 COG3096 MukB Uncharacterized p 97.2 1.1 2.3E-05 56.2 41.2 62 537-598 1059-1120(1480)
252 PF05911 DUF869: Plant protein 97.2 0.25 5.3E-06 65.0 31.9 10 30-39 195-204 (769)
253 PF10473 CENP-F_leu_zip: Leuci 97.2 0.058 1.3E-06 55.6 20.9 22 420-441 12-33 (140)
254 TIGR01713 typeII_sec_gspC gene 97.2 0.00077 1.7E-08 77.8 8.1 72 1140-1211 178-251 (259)
255 KOG0249|consensus 97.2 0.2 4.4E-06 62.5 28.1 46 362-407 84-129 (916)
256 PRK11186 carboxy-terminal prot 97.2 0.00089 1.9E-08 86.5 9.0 70 1139-1209 244-320 (667)
257 PF09787 Golgin_A5: Golgin sub 97.2 1 2.2E-05 57.9 36.3 28 286-313 108-135 (511)
258 smart00326 SH3 Src homology 3 97.2 0.00054 1.2E-08 59.6 4.7 53 1332-1394 2-54 (58)
259 PRK11186 carboxy-terminal prot 97.2 0.00075 1.6E-08 87.2 7.9 68 823-891 244-320 (667)
260 PF10473 CENP-F_leu_zip: Leuci 97.1 0.089 1.9E-06 54.3 21.1 33 433-465 11-43 (140)
261 KOG0982|consensus 97.1 0.98 2.1E-05 53.6 32.2 48 413-460 306-353 (502)
262 KOG2199|consensus 97.1 0.00024 5.1E-09 82.0 1.9 54 1332-1396 215-268 (462)
263 cd00174 SH3 Src homology 3 dom 97.0 0.00069 1.5E-08 58.0 4.3 52 1334-1395 1-52 (54)
264 PLN03188 kinesin-12 family pro 97.0 2.8 6E-05 56.9 39.7 20 646-665 1222-1241(1320)
265 KOG1853|consensus 97.0 0.19 4.1E-06 55.1 22.9 57 297-356 23-79 (333)
266 COG0497 RecN ATPase involved i 97.0 0.28 6E-06 61.7 27.7 38 232-270 103-141 (557)
267 COG4717 Uncharacterized conser 97.0 2.1 4.6E-05 55.4 35.0 48 310-357 552-599 (984)
268 PF15254 CCDC14: Coiled-coil d 96.9 0.25 5.5E-06 62.6 26.4 37 263-299 281-317 (861)
269 KOG2129|consensus 96.9 1.4 3E-05 52.0 31.3 27 283-309 53-79 (552)
270 KOG3938|consensus 96.9 0.0014 2.9E-08 71.9 6.1 82 1126-1207 124-208 (334)
271 KOG4438|consensus 96.9 1.5 3.3E-05 52.4 37.9 28 245-272 10-38 (446)
272 TIGR00618 sbcc exonuclease Sbc 96.9 4.3 9.3E-05 57.3 51.4 8 274-281 174-181 (1042)
273 KOG3834|consensus 96.9 0.0073 1.6E-07 71.2 12.1 146 1145-1317 9-166 (462)
274 KOG4438|consensus 96.9 1.7 3.6E-05 52.1 38.7 70 287-356 138-207 (446)
275 PRK10898 serine endoprotease; 96.9 0.0019 4E-08 78.7 7.5 63 1150-1212 278-340 (353)
276 PRK10898 serine endoprotease; 96.8 0.0022 4.8E-08 78.0 7.9 61 1260-1320 279-339 (353)
277 PF10481 CENP-F_N: Cenp-F N-te 96.8 0.12 2.5E-06 57.7 19.6 51 378-428 20-70 (307)
278 TIGR02038 protease_degS peripl 96.8 0.0019 4.2E-08 78.6 6.9 62 1150-1211 277-338 (351)
279 TIGR02038 protease_degS peripl 96.8 0.0022 4.8E-08 78.1 7.3 61 1260-1320 278-338 (351)
280 TIGR00634 recN DNA repair prot 96.8 0.34 7.4E-06 63.2 27.7 69 522-590 272-340 (563)
281 KOG0992|consensus 96.8 2.2 4.7E-05 51.8 45.9 30 286-315 59-88 (613)
282 TIGR01843 type_I_hlyD type I s 96.7 0.27 5.9E-06 61.9 25.8 25 559-583 247-271 (423)
283 PF10481 CENP-F_N: Cenp-F N-te 96.7 0.16 3.4E-06 56.7 19.7 16 578-593 161-176 (307)
284 TIGR01005 eps_transp_fam exopo 96.7 0.11 2.4E-06 70.5 23.3 17 578-594 382-398 (754)
285 TIGR03007 pepcterm_ChnLen poly 96.7 0.29 6.3E-06 63.1 26.1 28 376-403 204-231 (498)
286 TIGR01843 type_I_hlyD type I s 96.7 0.24 5.3E-06 62.3 25.0 21 381-401 79-99 (423)
287 KOG0249|consensus 96.7 0.48 1E-05 59.3 25.4 13 1389-1401 808-820 (916)
288 KOG0982|consensus 96.7 2.3 5E-05 50.6 33.3 50 495-544 339-388 (502)
289 PF13870 DUF4201: Domain of un 96.6 0.79 1.7E-05 50.2 24.6 28 329-356 6-33 (177)
290 PRK10869 recombination and rep 96.6 0.57 1.2E-05 60.7 27.2 63 528-590 273-335 (553)
291 KOG4407|consensus 96.6 0.0027 5.8E-08 82.3 5.8 128 1129-1318 47-201 (1973)
292 PRK00698 tmk thymidylate kinas 96.5 0.014 3.1E-07 65.5 11.2 164 1474-1647 3-202 (205)
293 TIGR01005 eps_transp_fam exopo 96.5 0.37 8.1E-06 65.4 26.6 25 332-356 197-221 (754)
294 KOG4360|consensus 96.5 2.5 5.4E-05 51.5 29.1 23 282-304 57-79 (596)
295 KOG0606|consensus 96.5 0.0095 2.1E-07 77.8 10.2 78 1131-1208 629-715 (1205)
296 PLN02939 transferase, transfer 96.5 2.1 4.5E-05 57.6 31.6 20 1541-1562 873-892 (977)
297 KOG1899|consensus 96.4 0.32 6.9E-06 59.8 21.6 64 523-586 238-302 (861)
298 PLN02939 transferase, transfer 96.4 3.3 7.2E-05 55.7 32.9 21 295-315 129-149 (977)
299 TIGR00618 sbcc exonuclease Sbc 96.4 8.4 0.00018 54.4 53.9 60 257-317 140-203 (1042)
300 PF10168 Nup88: Nuclear pore c 96.4 0.29 6.3E-06 64.7 23.4 30 557-586 684-713 (717)
301 KOG1103|consensus 96.4 2.6 5.6E-05 48.4 30.1 37 437-473 144-180 (561)
302 PF12795 MscS_porin: Mechanose 96.4 1.9 4.2E-05 49.7 27.5 8 413-420 54-61 (240)
303 KOG2070|consensus 96.4 0.0036 7.7E-08 74.0 4.8 59 1328-1397 13-71 (661)
304 KOG0243|consensus 96.3 6.9 0.00015 52.6 45.2 80 274-353 428-507 (1041)
305 KOG1421|consensus 96.3 0.028 6E-07 69.4 12.3 145 1151-1317 303-459 (955)
306 PF06818 Fez1: Fez1; InterPro 96.3 1.3 2.8E-05 48.5 23.4 13 556-568 136-148 (202)
307 KOG4226|consensus 96.2 0.0022 4.8E-08 70.2 2.0 54 1335-1396 194-247 (379)
308 KOG4360|consensus 96.2 1.4 3.1E-05 53.5 24.9 28 574-601 270-297 (596)
309 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.2 0.65 1.4E-05 48.2 20.0 28 553-580 100-127 (132)
310 KOG1899|consensus 96.2 0.6 1.3E-05 57.5 22.0 25 570-594 289-313 (861)
311 PF05384 DegS: Sensor protein 96.2 1.8 3.8E-05 46.1 23.1 22 568-589 129-150 (159)
312 KOG1853|consensus 96.1 2.3 5.1E-05 46.9 24.0 13 579-591 164-176 (333)
313 KOG3938|consensus 96.1 0.0091 2E-07 65.7 5.9 81 1237-1318 127-210 (334)
314 PF14685 Tricorn_PDZ: Tricorn 96.1 0.032 6.9E-07 53.0 8.8 69 1141-1211 3-81 (88)
315 PLN03188 kinesin-12 family pro 96.1 10 0.00022 51.9 37.7 68 517-588 1174-1241(1320)
316 KOG1320|consensus 96.0 0.014 3E-07 71.5 7.9 158 1151-1319 287-457 (473)
317 PF05384 DegS: Sensor protein 96.0 2.1 4.5E-05 45.6 22.8 61 501-561 90-150 (159)
318 PRK10698 phage shock protein P 96.0 2.8 6.1E-05 47.6 25.6 12 576-587 205-216 (222)
319 KOG4407|consensus 96.0 0.0077 1.7E-07 78.3 5.4 93 761-892 110-202 (1973)
320 TIGR03279 cyano_FeS_chp putati 96.0 0.042 9.1E-07 67.0 11.4 121 761-892 12-150 (433)
321 KOG1118|consensus 96.0 0.0039 8.5E-08 69.9 2.4 53 1331-1394 305-357 (366)
322 TIGR03017 EpsF chain length de 95.9 1.6 3.5E-05 55.3 26.4 8 258-265 132-139 (444)
323 PF05276 SH3BP5: SH3 domain-bi 95.9 4.2 9.2E-05 46.3 31.8 103 432-534 121-223 (239)
324 PF10168 Nup88: Nuclear pore c 95.9 0.82 1.8E-05 60.6 23.7 7 257-263 463-469 (717)
325 TIGR02860 spore_IV_B stage IV 95.9 0.023 4.9E-07 68.8 8.6 69 1247-1320 95-172 (402)
326 PF14073 Cep57_CLD: Centrosome 95.8 3.3 7.1E-05 44.4 23.7 32 476-507 122-153 (178)
327 KOG4677|consensus 95.8 6.2 0.00013 47.4 29.6 19 202-221 84-102 (554)
328 PF04495 GRASP55_65: GRASP55/6 95.8 0.048 1E-06 56.7 9.5 71 1247-1318 25-101 (138)
329 TIGR01000 bacteriocin_acc bact 95.8 1.4 3E-05 56.1 24.7 25 332-356 93-117 (457)
330 TIGR02860 spore_IV_B stage IV 95.8 0.029 6.2E-07 68.0 8.9 71 1136-1211 93-172 (402)
331 TIGR02977 phageshock_pspA phag 95.7 4 8.7E-05 46.4 25.2 24 563-587 193-216 (219)
332 KOG3129|consensus 95.6 0.043 9.4E-07 58.9 8.4 61 1152-1212 140-202 (231)
333 PF04111 APG6: Autophagy prote 95.6 0.16 3.5E-06 60.6 14.4 33 511-543 101-133 (314)
334 KOG4572|consensus 95.6 10 0.00023 48.4 37.8 21 645-665 1207-1227(1424)
335 TIGR01000 bacteriocin_acc bact 95.6 2.4 5.1E-05 54.0 25.6 10 765-774 339-348 (457)
336 PF04912 Dynamitin: Dynamitin 95.5 4.3 9.3E-05 50.4 26.9 23 290-312 90-112 (388)
337 COG0497 RecN ATPase involved i 95.5 9.3 0.0002 48.6 29.4 69 525-593 271-339 (557)
338 PF12777 MT: Microtubule-bindi 95.5 2.6 5.7E-05 51.3 24.6 13 377-389 83-95 (344)
339 KOG2991|consensus 95.5 5.3 0.00012 44.4 29.0 77 515-591 216-297 (330)
340 PF15397 DUF4618: Domain of un 95.4 6.6 0.00014 45.0 31.5 30 555-584 190-219 (258)
341 PRK00091 miaA tRNA delta(2)-is 95.4 0.013 2.7E-07 69.6 4.1 99 1474-1589 4-128 (307)
342 PF14685 Tricorn_PDZ: Tricorn 95.4 0.074 1.6E-06 50.6 8.3 70 1249-1320 2-81 (88)
343 PF15254 CCDC14: Coiled-coil d 95.4 11 0.00024 48.6 29.1 25 332-356 390-414 (861)
344 COG4717 Uncharacterized conser 95.3 15 0.00032 48.1 43.7 40 276-315 177-216 (984)
345 KOG0240|consensus 95.3 7.7 0.00017 48.4 26.6 34 416-449 419-452 (607)
346 PF13166 AAA_13: AAA domain 95.2 4.6 9.9E-05 54.7 28.3 20 768-788 527-546 (712)
347 KOG0992|consensus 95.2 11 0.00023 46.2 46.0 20 646-665 382-401 (613)
348 PF13166 AAA_13: AAA domain 95.1 4 8.7E-05 55.2 26.9 7 559-565 439-445 (712)
349 KOG0804|consensus 95.0 1.1 2.4E-05 53.7 18.2 24 76-99 27-53 (493)
350 PF12325 TMF_TATA_bd: TATA ele 95.0 1.1 2.4E-05 45.3 15.8 26 415-440 27-52 (120)
351 PF14073 Cep57_CLD: Centrosome 95.0 6.3 0.00014 42.4 23.2 48 518-565 122-169 (178)
352 COG3096 MukB Uncharacterized p 95.0 15 0.00033 46.6 47.0 12 106-117 76-87 (1480)
353 PF04912 Dynamitin: Dynamitin 94.9 14 0.0003 46.0 29.9 18 339-356 128-145 (388)
354 COG3480 SdrC Predicted secrete 94.9 0.13 2.8E-06 59.0 9.9 58 1151-1210 130-188 (342)
355 PF06637 PV-1: PV-1 protein (P 94.9 11 0.00024 44.6 36.3 17 649-665 349-365 (442)
356 KOG4687|consensus 94.8 8.8 0.00019 43.0 26.3 11 453-463 111-121 (389)
357 PLN03229 acetyl-coenzyme A car 94.8 6.8 0.00015 50.8 25.4 29 226-255 299-327 (762)
358 COG2433 Uncharacterized conser 94.8 3 6.6E-05 52.2 21.5 69 209-286 244-324 (652)
359 COG3975 Predicted protease wit 94.7 0.052 1.1E-06 66.3 6.4 65 1138-1211 450-514 (558)
360 PF10212 TTKRSYEDQ: Predicted 94.7 3.4 7.5E-05 51.3 21.7 35 278-312 293-327 (518)
361 PF15450 DUF4631: Domain of un 94.6 17 0.00036 45.3 53.4 57 299-355 18-74 (531)
362 COG0265 DegQ Trypsin-like seri 94.6 0.062 1.3E-06 65.8 6.9 63 1149-1211 268-330 (347)
363 PF12777 MT: Microtubule-bindi 94.5 3.5 7.5E-05 50.3 21.9 51 515-565 255-305 (344)
364 PLN03229 acetyl-coenzyme A car 94.5 10 0.00023 49.2 26.1 23 278-300 427-449 (762)
365 COG0265 DegQ Trypsin-like seri 94.4 0.11 2.5E-06 63.4 8.9 62 1259-1320 269-330 (347)
366 KOG4302|consensus 94.4 23 0.00049 46.1 39.4 39 373-411 100-138 (660)
367 PF03148 Tektin: Tektin family 94.4 18 0.00039 44.8 43.5 44 313-356 48-91 (384)
368 PF12795 MscS_porin: Mechanose 94.3 13 0.00028 42.9 29.4 33 324-356 33-65 (240)
369 PF12325 TMF_TATA_bd: TATA ele 94.3 2.2 4.8E-05 43.2 15.8 34 387-420 72-105 (120)
370 KOG4302|consensus 94.2 24 0.00053 45.8 35.6 40 381-420 101-140 (660)
371 KOG4348|consensus 94.2 0.041 8.8E-07 64.3 3.9 54 1332-1394 261-314 (627)
372 COG5283 Phage-related tail pro 94.2 33 0.00071 47.0 34.8 58 287-344 22-79 (1213)
373 KOG3129|consensus 94.1 0.11 2.4E-06 55.9 6.7 58 1262-1319 141-200 (231)
374 KOG4787|consensus 94.1 11 0.00023 46.8 23.4 30 375-404 338-367 (852)
375 KOG0244|consensus 94.0 30 0.00065 46.1 34.7 68 386-453 470-537 (913)
376 PRK12339 2-phosphoglycerate ki 94.0 0.45 9.7E-06 53.1 11.6 103 1541-1646 90-196 (197)
377 KOG0239|consensus 94.0 7.1 0.00015 51.4 24.1 9 542-550 305-313 (670)
378 PRK09681 putative type II secr 94.0 0.15 3.2E-06 58.8 7.9 57 1266-1322 210-269 (276)
379 KOG0240|consensus 94.0 16 0.00036 45.7 25.2 26 231-256 166-191 (607)
380 KOG2196|consensus 93.9 7.6 0.00017 43.3 20.0 44 417-460 98-141 (254)
381 PF12252 SidE: Dot/Icm substra 93.8 33 0.00071 45.8 35.8 59 49-107 822-884 (1439)
382 PF13949 ALIX_LYPXL_bnd: ALIX 93.8 19 0.00041 43.0 29.7 14 555-568 273-286 (296)
383 PRK09681 putative type II secr 93.8 0.16 3.5E-06 58.5 7.6 50 1163-1213 219-269 (276)
384 PRK06762 hypothetical protein; 93.8 0.72 1.6E-05 49.8 12.6 149 1474-1645 2-162 (166)
385 PF15294 Leu_zip: Leucine zipp 93.7 17 0.00037 42.1 24.3 44 382-425 131-174 (278)
386 COG3975 Predicted protease wit 93.7 0.14 3E-06 62.7 7.3 62 1249-1319 452-513 (558)
387 PF10498 IFT57: Intra-flagella 93.7 4.9 0.00011 48.8 20.4 42 501-542 279-320 (359)
388 KOG0606|consensus 93.6 0.15 3.3E-06 67.2 7.8 78 1240-1318 630-716 (1205)
389 KOG4572|consensus 93.5 30 0.00066 44.5 32.0 26 647-672 1090-1115(1424)
390 PRK10361 DNA recombination pro 93.5 24 0.00052 44.3 26.0 19 647-665 385-403 (475)
391 KOG1738|consensus 93.4 0.14 3E-06 63.8 6.6 75 1137-1211 211-286 (638)
392 COG4026 Uncharacterized protei 93.3 1.3 2.8E-05 47.9 12.8 10 209-218 37-46 (290)
393 PF15290 Syntaphilin: Golgi-lo 93.3 1.7 3.7E-05 49.1 14.2 83 274-356 55-137 (305)
394 PF15290 Syntaphilin: Golgi-lo 93.3 3.3 7E-05 46.9 16.3 69 419-487 69-137 (305)
395 COG2433 Uncharacterized conser 93.3 2.9 6.3E-05 52.4 17.5 13 77-89 5-17 (652)
396 KOG4807|consensus 93.2 22 0.00047 42.0 33.5 37 557-593 518-554 (593)
397 KOG3532|consensus 93.2 0.25 5.4E-06 61.1 8.3 69 1138-1208 385-453 (1051)
398 KOG2008|consensus 93.2 20 0.00042 41.2 29.4 21 560-580 157-177 (426)
399 COG0563 Adk Adenylate kinase a 93.0 0.44 9.6E-06 52.1 9.3 154 1477-1645 3-177 (178)
400 PF06637 PV-1: PV-1 protein (P 93.0 25 0.00053 41.8 40.9 19 647-665 361-379 (442)
401 PF12812 PDZ_1: PDZ-like domai 92.9 0.57 1.2E-05 43.7 8.5 74 768-882 4-77 (78)
402 PF10146 zf-C4H2: Zinc finger- 92.9 3.6 7.9E-05 46.7 16.6 8 999-1006 202-209 (230)
403 PRK12704 phosphodiesterase; Pr 92.9 21 0.00045 46.0 25.4 10 1200-1209 503-512 (520)
404 PF10212 TTKRSYEDQ: Predicted 92.9 5.6 0.00012 49.6 19.1 8 247-254 268-275 (518)
405 TIGR03319 YmdA_YtgF conserved 92.8 23 0.0005 45.5 25.5 8 1201-1208 498-505 (514)
406 KOG0993|consensus 92.8 26 0.00057 41.7 39.6 36 558-593 420-455 (542)
407 KOG0288|consensus 92.7 5.4 0.00012 47.6 17.8 59 379-437 16-74 (459)
408 PF05276 SH3BP5: SH3 domain-bi 92.7 22 0.00048 40.6 31.6 34 444-477 75-108 (239)
409 PRK00106 hypothetical protein; 92.7 39 0.00084 43.4 27.3 179 373-553 25-204 (535)
410 PF10234 Cluap1: Clusterin-ass 92.7 10 0.00023 43.8 19.8 83 443-525 173-255 (267)
411 PRK14731 coaE dephospho-CoA ki 92.7 0.36 7.9E-06 54.4 8.4 69 1571-1648 135-203 (208)
412 KOG3532|consensus 92.6 0.3 6.6E-06 60.4 7.9 75 1244-1320 382-456 (1051)
413 PRK00081 coaE dephospho-CoA ki 92.6 0.32 6.9E-06 54.2 7.7 96 1540-1647 95-193 (194)
414 PF08580 KAR9: Yeast cortical 92.5 49 0.0011 44.0 36.5 32 296-327 24-55 (683)
415 PHA02530 pseT polynucleotide k 92.4 0.91 2E-05 54.3 11.8 124 1475-1615 3-142 (300)
416 PRK10884 SH3 domain-containing 92.1 2.1 4.5E-05 47.8 13.1 21 409-429 91-111 (206)
417 KOG4403|consensus 92.0 19 0.00041 43.2 20.9 16 579-594 397-412 (575)
418 PF03148 Tektin: Tektin family 92.0 40 0.00086 41.9 44.0 24 621-644 324-347 (384)
419 PRK12704 phosphodiesterase; Pr 92.0 32 0.00069 44.3 25.3 8 761-768 275-282 (520)
420 COG3480 SdrC Predicted secrete 91.9 0.32 6.9E-06 56.0 6.6 58 830-892 129-188 (342)
421 KOG1738|consensus 91.9 0.21 4.6E-06 62.3 5.5 72 820-892 210-285 (638)
422 cd01672 TMPK Thymidine monopho 91.8 0.65 1.4E-05 51.6 9.0 158 1476-1646 2-199 (200)
423 PRK10884 SH3 domain-containing 91.7 2.5 5.4E-05 47.2 13.1 10 377-386 94-103 (206)
424 PF09738 DUF2051: Double stran 91.6 12 0.00026 44.3 19.3 19 647-665 281-299 (302)
425 PF14992 TMCO5: TMCO5 family 91.5 9.4 0.0002 44.1 17.6 31 326-356 15-45 (280)
426 PRK15422 septal ring assembly 91.5 3 6.6E-05 38.1 10.8 13 495-507 39-51 (79)
427 PF08580 KAR9: Yeast cortical 91.5 61 0.0013 43.1 37.1 17 618-634 349-365 (683)
428 PF15358 TSKS: Testis-specific 91.4 23 0.00051 42.1 20.7 27 575-601 315-341 (558)
429 PRK10361 DNA recombination pro 91.4 49 0.0011 41.7 26.7 24 479-502 138-161 (475)
430 KOG4460|consensus 91.3 37 0.0008 42.1 22.8 24 561-584 712-735 (741)
431 PF09738 DUF2051: Double stran 91.3 11 0.00024 44.5 18.6 15 553-567 228-242 (302)
432 KOG2196|consensus 91.2 29 0.00064 38.9 20.7 9 562-570 237-245 (254)
433 TIGR03319 YmdA_YtgF conserved 91.2 47 0.001 42.8 25.6 7 761-767 269-275 (514)
434 PF10234 Cluap1: Clusterin-ass 91.1 13 0.00029 42.9 18.5 65 530-594 176-240 (267)
435 PRK14530 adenylate kinase; Pro 91.1 1.5 3.2E-05 49.7 11.1 51 1597-1647 158-213 (215)
436 COG3206 GumC Uncharacterized p 91.0 55 0.0012 41.7 30.0 31 326-356 192-222 (458)
437 PF15035 Rootletin: Ciliary ro 91.0 22 0.00048 39.0 19.3 6 559-564 149-154 (182)
438 PRK10698 phage shock protein P 90.9 33 0.00073 39.0 26.3 43 314-356 30-72 (222)
439 KOG4787|consensus 90.8 53 0.0011 41.1 32.9 35 285-319 330-364 (852)
440 KOG0162|consensus 90.7 0.17 3.7E-06 63.0 3.2 50 1334-1394 1053-1102(1106)
441 PF03999 MAP65_ASE1: Microtubu 90.7 0.52 1.1E-05 62.1 7.9 311 279-590 32-409 (619)
442 PF04949 Transcrip_act: Transc 90.7 22 0.00048 36.6 19.4 17 472-488 89-105 (159)
443 PRK13946 shikimate kinase; Pro 90.7 2.4 5.3E-05 46.7 12.0 158 1472-1649 8-178 (184)
444 KOG0515|consensus 90.7 0.13 2.9E-06 61.9 2.1 54 1334-1395 685-738 (752)
445 PF11932 DUF3450: Protein of u 90.6 18 0.00039 42.1 19.7 137 497-633 23-164 (251)
446 PRK14531 adenylate kinase; Pro 90.6 4.8 0.0001 44.3 14.3 153 1474-1645 2-182 (183)
447 PRK15422 septal ring assembly 90.6 4.2 9.1E-05 37.3 10.8 73 427-499 6-78 (79)
448 PF13949 ALIX_LYPXL_bnd: ALIX 90.6 44 0.00095 39.8 31.6 256 374-632 7-294 (296)
449 PF07931 CPT: Chloramphenicol 90.6 1.9 4E-05 47.0 10.6 153 1474-1646 1-174 (174)
450 KOG4460|consensus 90.6 22 0.00047 44.0 20.0 161 382-544 573-737 (741)
451 PRK00106 hypothetical protein; 90.5 64 0.0014 41.5 28.2 179 408-588 25-207 (535)
452 KOG3834|consensus 90.4 1.4 3.1E-05 52.7 10.1 114 769-888 38-164 (462)
453 COG3031 PulC Type II secretory 90.4 0.87 1.9E-05 50.3 7.7 73 1129-1211 195-267 (275)
454 KOG0972|consensus 90.3 9.3 0.0002 43.4 15.5 148 388-546 218-365 (384)
455 PF03999 MAP65_ASE1: Microtubu 90.1 0.77 1.7E-05 60.5 8.7 380 272-689 11-413 (619)
456 PF04108 APG17: Autophagy prot 90.1 60 0.0013 40.7 44.1 320 293-612 22-386 (412)
457 COG1842 PspA Phage shock prote 90.1 39 0.00084 38.5 23.4 170 420-594 12-181 (225)
458 KOG3875|consensus 90.1 0.095 2.1E-06 59.4 0.2 58 1331-1394 267-326 (362)
459 cd07672 F-BAR_PSTPIP2 The F-BA 89.9 43 0.00093 38.6 25.4 185 422-609 19-212 (240)
460 COG3074 Uncharacterized protei 89.8 5.9 0.00013 35.0 10.5 73 462-534 6-78 (79)
461 TIGR01360 aden_kin_iso1 adenyl 89.5 1.1 2.4E-05 49.4 8.1 164 1477-1648 6-188 (188)
462 PF15358 TSKS: Testis-specific 89.4 44 0.00096 39.9 20.6 214 366-579 108-389 (558)
463 PF06705 SF-assemblin: SF-asse 89.4 48 0.001 38.4 37.2 234 335-594 4-240 (247)
464 PF14992 TMCO5: TMCO5 family 89.3 14 0.0003 42.8 16.5 175 443-643 8-182 (280)
465 PRK05057 aroK shikimate kinase 89.3 8.2 0.00018 42.1 14.6 142 1474-1647 4-171 (172)
466 PRK04182 cytidylate kinase; Pr 89.3 5.3 0.00011 43.5 13.3 152 1477-1650 3-176 (180)
467 KOG1962|consensus 89.2 5.9 0.00013 44.0 13.0 99 430-533 112-210 (216)
468 COG3074 Uncharacterized protei 89.2 6.8 0.00015 34.6 10.5 73 455-527 6-78 (79)
469 KOG2751|consensus 89.2 11 0.00023 45.7 15.9 124 420-545 145-268 (447)
470 KOG4225|consensus 89.1 0.34 7.4E-06 57.6 3.7 54 1329-1391 429-482 (489)
471 KOG3091|consensus 88.9 18 0.00038 44.7 17.8 168 421-593 337-505 (508)
472 KOG1103|consensus 88.8 53 0.0011 38.2 29.4 265 319-591 16-292 (561)
473 PRK00131 aroK shikimate kinase 88.8 7.7 0.00017 41.9 14.2 145 1472-1648 2-172 (175)
474 PF06005 DUF904: Protein of un 88.8 7.6 0.00017 35.6 11.3 68 376-443 4-71 (72)
475 KOG2751|consensus 88.8 15 0.00032 44.6 16.7 130 386-517 139-268 (447)
476 KOG2685|consensus 88.5 67 0.0015 39.1 37.0 279 290-568 59-389 (421)
477 PRK01184 hypothetical protein; 88.5 4.6 0.0001 44.4 12.2 157 1474-1647 1-178 (184)
478 PF06705 SF-assemblin: SF-asse 88.3 56 0.0012 37.9 35.9 232 410-657 4-240 (247)
479 KOG0163|consensus 88.3 23 0.00051 45.3 18.5 178 520-697 837-1015(1259)
480 KOG3601|consensus 88.2 0.32 6.9E-06 52.8 2.5 60 1328-1392 159-218 (222)
481 PRK13808 adenylate kinase; Pro 88.2 6 0.00013 47.6 13.4 159 1477-1648 3-194 (333)
482 PF06005 DUF904: Protein of un 88.1 9.8 0.00021 34.9 11.5 69 453-521 4-72 (72)
483 TIGR02173 cyt_kin_arch cytidyl 88.1 1.5 3.2E-05 47.5 7.8 152 1477-1645 3-170 (171)
484 PTZ00464 SNF-7-like protein; P 88.0 52 0.0011 37.1 20.4 143 416-567 16-173 (211)
485 TIGR00235 udk uridine kinase. 88.0 3.2 6.9E-05 46.8 10.6 171 1468-1648 1-205 (207)
486 COG1936 Predicted nucleotide k 87.9 8.7 0.00019 41.3 12.8 140 1477-1645 3-154 (180)
487 COG1382 GimC Prefoldin, chaper 87.9 22 0.00048 35.8 14.8 104 316-430 7-110 (119)
488 PF04582 Reo_sigmaC: Reovirus 87.8 0.94 2E-05 53.2 6.2 146 391-536 8-153 (326)
489 PF08647 BRE1: BRE1 E3 ubiquit 87.7 13 0.00028 36.4 13.0 96 381-476 1-96 (96)
490 KOG1320|consensus 87.7 0.98 2.1E-05 55.9 6.6 63 1152-1214 399-461 (473)
491 PRK09841 cryptic autophosphory 87.7 13 0.00028 50.2 17.9 140 379-522 256-397 (726)
492 PF15450 DUF4631: Domain of un 87.6 87 0.0019 39.3 51.7 384 290-708 127-529 (531)
493 KOG1962|consensus 87.5 7.6 0.00017 43.2 12.5 97 397-498 114-210 (216)
494 PF04582 Reo_sigmaC: Reovirus 87.4 1 2.2E-05 52.8 6.2 124 420-543 30-153 (326)
495 COG4913 Uncharacterized protei 87.4 1E+02 0.0022 39.8 30.7 266 288-570 617-886 (1104)
496 KOG4403|consensus 87.3 77 0.0017 38.3 21.9 161 396-558 237-425 (575)
497 KOG2077|consensus 87.3 90 0.0019 39.1 23.4 254 293-561 25-423 (832)
498 PTZ00121 MAEBL; Provisional 87.2 1.5E+02 0.0032 41.6 46.0 347 293-664 1468-1817(2084)
499 PRK03947 prefoldin subunit alp 87.0 17 0.00036 38.2 14.6 94 410-503 5-137 (140)
500 TIGR01313 therm_gnt_kin carboh 87.0 5.6 0.00012 42.7 11.4 155 1477-1645 1-161 (163)
No 1
>KOG0609|consensus
Probab=100.00 E-value=2.9e-68 Score=618.86 Aligned_cols=395 Identities=23% Similarity=0.340 Sum_probs=333.4
Q ss_pred CCCeEEEEecCCcCccCeEEecCCCcceEEEEeCCCChhhh-cCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCeEEE
Q psy3835 1235 GEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 1313 (1659)
Q Consensus 1235 ~~~~~v~l~k~~~~~lGi~l~gg~~~gi~V~~V~~gs~A~~-~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L 1313 (1659)
...++|.+.+..+.++|+++.....+.+||++|..||.|++ +-|+.||.|++|||+++.+.+..+...+|....+.++|
T Consensus 121 ~~vriv~i~k~~~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itf 200 (542)
T KOG0609|consen 121 EAVRIVRIVKNTGEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITF 200 (542)
T ss_pred ceeEEEEEeecCCCccceEEEeccCCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEE
Confidence 34688999999889999999986655799999999999999 55899999999999999999999999999999999999
Q ss_pred EEEeCcccccccccCCCC-cceeeeccccCCCCCc-----cccccccCCcEEEEecCCCCCCCCcEEEEEeccCCCcccc
Q psy3835 1314 LAQYSVERYNEVKDKPGD-SFYMRALFSRTGDLGD-----ALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQC 1387 (1659)
Q Consensus 1314 ~v~r~~~~~~~~~~~~~~-~~yvra~f~y~~~~~~-----~~~L~f~~gdil~v~~t~~~~~~~~W~a~~v~~~~~~~~~ 1387 (1659)
+|.+... . .+.. ..||||+|||+|..|+ ++||+|++||||||+| ++|.+||||++++.. ....+
T Consensus 201 kiiP~~~---~---~~~~~~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~---qdD~nWWQA~~~~~~-~~~~A 270 (542)
T KOG0609|consen 201 KIIPSYR---P---PPQQQVVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVS---QDDPNWWQARRVGDP-FGGLA 270 (542)
T ss_pred EEccccc---C---CCceeeeeehhhcCcCcccCCcccchhcCCcccccceeeecc---CCCcchhhhhcccCc-ccccc
Confidence 9998743 1 1223 4999999999999986 8999999999999999 699999999999753 22579
Q ss_pred cCcCChhHHHHHHHHHhhccccccccccccccccccccccccccchhhhccccCCCCccCCCCCCCcCccccccceeeec
Q psy3835 1388 GIIPSKYKVEEELLLRRSLGDLESDARRATRRSFFRRKKHQRSDSKELASFSNINLGWYSDSGTLNEDSVSLASYQRVIR 1467 (1659)
Q Consensus 1388 GlIPs~~~~e~~~~~~~~~~~~~~~~~~~~r~~~~~rkk~~r~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ye~V~~ 1467 (1659)
|||||+.++||+.+.++.... +.... ..|..+.++||+.. +.|... .+.. + +...+.+||+|++
T Consensus 271 GLiPS~~~qerr~a~~~~~~~-~~~~~-~~c~~l~kkkk~~~-------~~y~~~-----~~~~-~-d~~~~~tYEEV~~ 334 (542)
T KOG0609|consen 271 GLIPSKELQERRVACLRREVS-KEPEK-TRCQRLSKKKKKKK-------SKYLGK-----HSAV-F-DQPELLTYEEVVR 334 (542)
T ss_pred ccccCHHHHHHHHHHHhhhcc-cCCcC-chhcccchhhhhhh-------hhhhhh-----cchh-h-hccccccHHHHhh
Confidence 999999999998876643221 10111 12333333333211 112211 1111 1 2346679999999
Q ss_pred cCCCCCCCcEEEECCCh---HHHHHHHhhhCCCcccccccceec--------------CChHHHHHhccCCceEEEEEeC
Q psy3835 1468 LNSEPVLRPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMH--------------CPQAAMEKGLADNLFVDYRKKG 1530 (1659)
Q Consensus 1468 ~~~~~~~RpvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttr--------------vs~~~f~~~i~~~~flE~~~~~ 1530 (1659)
+++ ..+|+|||+||.| ..|+++|+..+|++|+++|||||| ||+++|+++|.+|+|||||+|.
T Consensus 335 ~~~-~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~lE~GEy~ 413 (542)
T KOG0609|consen 335 YPP-FRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAGKFLEYGEYE 413 (542)
T ss_pred hcc-cccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceeeehHHHhhhhhcCCceecCcch
Confidence 998 8889999999998 999999999999999999999998 9999999999999999999999
Q ss_pred CeeeeecHHHHHHHHHcCCCeEEEEcChhHHHHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHH
Q psy3835 1531 AYFECTSVAAVKDACDKNNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMY 1610 (1659)
Q Consensus 1531 g~~YGts~~~V~~v~~~~gk~~iLdi~~~~~~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~ 1610 (1659)
||+|||++++|+.++++ ||+||||+.||+++.||+++|.||||||.||+++.++.+++......+.....+++++++++
T Consensus 414 ~nlYGTs~dsVr~v~~~-gKicvLdv~Pqalk~lRt~Ef~PyVIFI~pP~~~~~r~~r~~~~~~~~~~~~~~d~~Lq~i~ 492 (542)
T KOG0609|consen 414 GNLYGTSLDSVRNVIAS-GKICVLDVEPQALKVLRTAEFKPYVIFIAPPSLEELRALRKVAVMSTIVAKQFTDEDLQEII 492 (542)
T ss_pred hccccchHHHHHHHHHh-CCEEEEecCHHHhhhhhhhcccceEEEecCCCchhHHHHhhhccccccccccCCHHHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999998877221110112246888999999
Q ss_pred HHHHHHHHHcCCcceEEEeCCCCHHHHHHHHHHHHHhhcCCceEEeCC
Q psy3835 1611 EHGLKIECEHKHYISAVIPAGVNIAYMCTQIQTAVELEQSKTLWVPSL 1658 (1659)
Q Consensus 1611 ~~a~~~e~~~~~~fd~vi~n~~~~~~~~~~l~~ii~~~~~~~~Wvp~~ 1658 (1659)
+.++.||+.|+||||.+|+|+ |++.||++|+.+|...+++|+|||+|
T Consensus 493 ~eS~~ie~~yghyfD~iIvN~-dld~t~~eL~~~iekl~tepqWVPvs 539 (542)
T KOG0609|consen 493 DESARIEQQYGHYFDLIIVNS-DLDKTFRELKTAIEKLRTEPQWVPVS 539 (542)
T ss_pred HHHHHHHHHhhhheeEEEEcC-cHHHHHHHHHHHHHHhccCCceeeee
Confidence 999999999999999999999 99999999999999999999999987
No 2
>KOG3580|consensus
Probab=100.00 E-value=1e-65 Score=586.34 Aligned_cols=478 Identities=25% Similarity=0.436 Sum_probs=377.9
Q ss_pred eEEEEEecC--CCCceEEEEecCCCcEEEEEeCCCChhhhcC-CCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEE
Q psy3835 1129 LRRVHIDKS--VEPLGIQIQCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITML 1205 (1659)
Q Consensus 1129 ~~~v~l~k~--~~~lG~sl~~~~~~gv~I~~V~~gs~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~ 1205 (1659)
+..+.|.|. ++.+|+.|.. .|||..|...|.|++.| |+.||.||.|||....+|+..++..++..+...+.|+
T Consensus 199 p~kv~LvKsR~nEEyGlrLgS----qIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~lv 274 (1027)
T KOG3580|consen 199 PIKVLLVKSRANEEYGLRLGS----QIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLV 274 (1027)
T ss_pred cceEEEEeeccchhhcccccc----hhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCceEEE
Confidence 455667665 6788988764 59999999999999999 9999999999999999999999999999999999999
Q ss_pred EEecCCccc-cccCC--------------------CCC---------------------CCcc---------------cc
Q psy3835 1206 VQYSPDKYH-ELEGS--------------------GSS---------------------SAEN---------------ES 1228 (1659)
Q Consensus 1206 v~r~~~~~~-~~~~~--------------------~~~---------------------~~~~---------------~~ 1228 (1659)
|.|+..... .++.. .++ .++. .+
T Consensus 275 VlRD~~qtLiNiP~l~d~dSe~~disEi~tms~rs~spp~rrs~~~s~d~~s~s~h~p~~Ps~r~~~~~R~s~~gat~tP 354 (1027)
T KOG3580|consen 275 VLRDSQQTLINIPSLNDSDSEIEDISEIETMSDRSFSPPERRSQYSSYDYHSSSEHLPERPSSREDTPSRLSRMGATPTP 354 (1027)
T ss_pred EEecCCceeeecCCCccccccccchhhhhccccccCCCchhhhhccCccccCchhcCCCCCCccccchhhcccCCCCCCC
Confidence 998654321 00000 000 0000 00
Q ss_pred c-------------------------C--------------------CCCCCCCeEEEEecCCcCccCeEEecCCCcceE
Q psy3835 1229 V-------------------------S--------------------GRGSGEPRFLMIETRKCSNLGISLVGGNAVGIY 1263 (1659)
Q Consensus 1229 ~-------------------------~--------------------~~~~~~~~~v~l~k~~~~~lGi~l~gg~~~gi~ 1263 (1659)
+ + ....+..++|.+.| +..+|+.+.|||+.|||
T Consensus 355 vks~~d~~~~~V~e~t~e~~~~q~p~lP~pk~~~~~~~~pS~~~m~~ygysP~tk~VrF~K--GdSvGLRLAGGNDVGIF 432 (1027)
T KOG3580|consen 355 VKSTGDIAGTVVPETTKEPRYQQEPPLPQPKAAPRTFLRPSPEDMAIYGYSPNTKMVRFKK--GDSVGLRLAGGNDVGIF 432 (1027)
T ss_pred ccCccccCCccccccccCcccccCCCCCCcccCcceeeecCHHHHHHhcCCCCceeEEeec--CCeeeeEeccCCceeEE
Confidence 0 0 01123445566655 44799999999999999
Q ss_pred EEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcC--CCCeEEEEEEeCccccccc-ccCCCCcceeeeccc
Q psy3835 1264 VHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK--PADKVTVLAQYSVERYNEV-KDKPGDSFYMRALFS 1340 (1659)
Q Consensus 1264 V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~--~~~~v~L~v~r~~~~~~~~-~~~~~~~~yvra~f~ 1340 (1659)
|+.|..|+||+.-||+.||+||.||.+++.++..++|+..|.. .+..|+|+.++..+-|+.+ .+.-||+||||+||.
T Consensus 433 VaGvqegspA~~eGlqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ~k~Dvyr~iv~s~vGDSFyIRtHFE 512 (1027)
T KOG3580|consen 433 VAGVQEGSPAEQEGLQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQSKADVYRDIVASGVGDSFYIRTHFE 512 (1027)
T ss_pred EeecccCCchhhccccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhhhhhHHHHHHHhccCCceeEEeeeee
Confidence 9999999999999999999999999999999999999988875 6789999999999999887 457899999999999
Q ss_pred cCCCCCccccccccCCcEEEEecCCCCCCCCcEEEEEeccCCCcccccCcCChhHHHHHHHHHhhccccccccccccccc
Q psy3835 1341 RTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYKVEEELLLRRSLGDLESDARRATRRS 1420 (1659)
Q Consensus 1341 y~~~~~~~~~L~f~~gdil~v~~t~~~~~~~~W~a~~v~~~~~~~~~GlIPs~~~~e~~~~~~~~~~~~~~~~~~~~r~~ 1420 (1659)
|.++... +|+|.+||||||+||+|+|..|.|.|-|++.+.++.+.|+|||++|+||..-.. .....+-.+.|..
T Consensus 513 ~Eke~P~--gL~FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPNksRAEQlASvq----~aqr~~agGdRAd 586 (1027)
T KOG3580|consen 513 CEKETPQ--GLAFTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPNKSRAEQLASVQ----NAQRDNAGGDRAD 586 (1027)
T ss_pred ecCCCCc--cccccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCCccHHHHHHHHH----hhccccccchHHH
Confidence 9998755 999999999999999999999999999999988889999999999999943221 1111112246777
Q ss_pred ccccccc----ccccchhhhccccCCCCccCCCCCCCcCccccccceeeeccCCCCCCCcEEEECCChHHHHHHHhhhCC
Q psy3835 1421 FFRRKKH----QRSDSKELASFSNINLGWYSDSGTLNEDSVSLASYQRVIRLNSEPVLRPVILVGALSDTVTDKLLQDFP 1496 (1659)
Q Consensus 1421 ~~~rkk~----~r~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ye~V~~~~~~~~~RpvVl~Gp~g~~l~~~Ll~~~p 1496 (1659)
||+-+.. ++...+.+.++++. +. ...+|+||+|++... +|.|||||+||.++..+.+|..+.|
T Consensus 587 FWR~RGlRsg~KknlrkSREDLsA~---------~v---qtkfPaYERVvLREA-gFkRPVvifGPiADiAmeKLa~E~P 653 (1027)
T KOG3580|consen 587 FWRMRGLRSGVKKNLRKSREDLSAV---------VV---QTKFPAYERVVLREA-GFKRPVVIFGPIADIAMEKLANELP 653 (1027)
T ss_pred HHHHhhhhhhhhhhhhhhhhhhhhc---------ee---cccCCchhhhhhhhh-cccCceEEeccHHHHHHHHHhhhCc
Confidence 8862211 11111222333321 11 235789999999999 9999999999999999999999999
Q ss_pred CcccccccceecCChHHHHHhccCCceEEEEEeCCeeeeecHHHHHHHHHcCCCeEEEEcChhHHHHHHhcCCccEEEEE
Q psy3835 1497 DKFVRCAPEIMHCPQAAMEKGLADNLFVDYRKKGAYFECTSVAAVKDACDKNNAHVILDVSLAGVERLHRQHVYPIVLLI 1576 (1659)
Q Consensus 1497 ~~f~~~v~~Ttrvs~~~f~~~i~~~~flE~~~~~g~~YGts~~~V~~v~~~~gk~~iLdi~~~~~~~l~~~~~~pivIfI 1576 (1659)
+.|..+-+...-...+ + .--.+.+.+|+.++++ .||.||||.|.++.+|...+.||||||+
T Consensus 654 D~fqiAkteprdag~~------~------------stg~irL~Tvrqiieq-DKHALLDVTP~AvdrLNY~QwypIVvff 714 (1027)
T KOG3580|consen 654 DWFQIAKTEPRDAGSE------K------------STGVIRLNTVRQIIEQ-DKHALLDVTPKAVDRLNYTQWYPIVVFF 714 (1027)
T ss_pred chhhhhccccccCCcc------c------------ccceEEehhhHHHHhc-ccchhhccCHHHHhhhccceeeeEEEEe
Confidence 9988543332111000 0 0113468999999999 9999999999999999999999999999
Q ss_pred ecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHHcCCcceEEEeCCCCHHHHHHHHHHHHHhhcCCceEEe
Q psy3835 1577 KFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLKIECEHKHYISAVIPAGVNIAYMCTQIQTAVELEQSKTLWVP 1656 (1659)
Q Consensus 1577 ~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~~~e~~~~~~fd~vi~n~~~~~~~~~~l~~ii~~~~~~~~Wvp 1656 (1659)
.|-|..-++.++. |+ ...+....++++++|.++.+.+.|+|+++|.-++--+.+|..|+++|.++|++++||.
T Consensus 715 ~PdSrqgvktmRq----rL---~P~Sr~SsRkLy~~a~KL~K~~~HLFTaTInLNs~nD~Wyg~LK~~iq~QQ~~~vWvs 787 (1027)
T KOG3580|consen 715 NPDSRQGVKTMRQ----RL---APTSRKSSRKLYDQANKLKKTCAHLFTATINLNSANDSWYGSLKDTIQHQQGEAVWVS 787 (1027)
T ss_pred CCcchHHHHHHHH----Hh---CcccchhHHHHHHHHHHHhhhchhheEeeeccCCCChhHHHHHHHHHHHhcCceeEee
Confidence 9999999998876 54 2456667899999999999999999999997443667899999999999999999996
Q ss_pred C
Q psy3835 1657 S 1657 (1659)
Q Consensus 1657 ~ 1657 (1659)
.
T Consensus 788 E 788 (1027)
T KOG3580|consen 788 E 788 (1027)
T ss_pred c
Confidence 4
No 3
>KOG0708|consensus
Probab=100.00 E-value=9.2e-47 Score=426.88 Aligned_cols=337 Identities=34% Similarity=0.527 Sum_probs=288.9
Q ss_pred EECCeeCCCcCHHHHHHHHcCCCCeEEEEEEeCccccccccc------------------CCCCcceeeeccccCCCCCc
Q psy3835 1286 EYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKD------------------KPGDSFYMRALFSRTGDLGD 1347 (1659)
Q Consensus 1286 ~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~r~~~~~~~~~~------------------~~~~~~yvra~f~y~~~~~~ 1347 (1659)
.+||++..+.++.++...+..+++++++.++..++.|..+.. .+...+||++.|+|+...+.
T Consensus 2 ~~~~~~~~~~~~~~~a~~l~~sg~~~~i~~q~~~e~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~d~d~~~~~ 81 (359)
T KOG0708|consen 2 SVNGVDGRNATHEDAAAALKTSGDSVYIRAQYRPEEYDKFELKIHDLEVLHVMDSMYQSRQEWRCLYVDALFDYDLDRGS 81 (359)
T ss_pred cccccccccchHHHHHHHhhcCCCceEEEEEechhhhchhhcccCCcchHHHHHhhhccCCCCceeEeeccccccccCCC
Confidence 589999999999999999999999999999999988876431 22458999999999987663
Q ss_pred ---cccccccCCcEEEEecCCCCCCCCcEEEEEeccCCCcccccCcCChhHHHHHHHHHhhccccccccccccccccccc
Q psy3835 1348 ---ALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYKVEEELLLRRSLGDLESDARRATRRSFFRR 1424 (1659)
Q Consensus 1348 ---~~~L~f~~gdil~v~~t~~~~~~~~W~a~~v~~~~~~~~~GlIPs~~~~e~~~~~~~~~~~~~~~~~~~~r~~~~~r 1424 (1659)
..+++|..|+|+|+.+. .+..||+|+++.+.+.+...|+||+..+.+++...|+ + +.+|..+
T Consensus 82 ~~~~~~~~~~~~~i~~~~~~---~~~e~~~~r~~s~~~~~~~~~~~~~~~~~~rr~r~r~--k----------~~~f~~~ 146 (359)
T KOG0708|consen 82 PGYSRAQSFLYGQILHLISR---SDDEWWQARHVSPRGEEKDVGLVPSKSRRARRVRLRL--K----------RDSFNSG 146 (359)
T ss_pred CCcchhhhhhhhhhhhcccc---ccHHHHHhhccCCCccccccccccccccccccccccc--c----------ccccccc
Confidence 67899999999999995 6788999999999888889999999998887654432 1 1122222
Q ss_pred cccccccchhhhccccCCCCccCCCCCCCcCccccccceeeeccCCCCCCCcEEEECCChHHHHHHHhhhCCCccccccc
Q psy3835 1425 KKHQRSDSKELASFSNINLGWYSDSGTLNEDSVSLASYQRVIRLNSEPVLRPVILVGALSDTVTDKLLQDFPDKFVRCAP 1504 (1659)
Q Consensus 1425 kk~~r~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ye~V~~~~~~~~~RpvVl~Gp~g~~l~~~Ll~~~p~~f~~~v~ 1504 (1659)
++.....+++...+ .+.++. ......+.+|+.|.++.+ .+.|||+|+||..+.|+++|+.++|++|..|+|
T Consensus 147 ~~~~~~~s~d~~~~-------~~~~~~-~~~e~~~lsY~~V~~~~~-~~~RPVlilg~~~d~l~~~Lv~e~~~kF~~C~~ 217 (359)
T KOG0708|consen 147 RDFPFLLSKDGLDM-------SSDENE-LGKELSLLSYELVERLDS-NYLRPVLILGPLLDRLLDNLVNEFPDKFKSCLP 217 (359)
T ss_pred CCcccccCcccccc-------cccccc-cccccccccchhhhhhhc-cccCceEeccchHHHHHHHHHHhhhccccccch
Confidence 22222222221110 012222 223467789999999999 999999999999988999999999999999999
Q ss_pred ceecCChHHHHHhccCCceEEEEEeCCeeeeecHHHHHHHHHcCCCeEEEEcChhHHHHHHhcCCccEEEEEecCCHHHH
Q psy3835 1505 EIMHCPQAAMEKGLADNLFVDYRKKGAYFECTSVAAVKDACDKNNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQI 1584 (1659)
Q Consensus 1505 ~Ttrvs~~~f~~~i~~~~flE~~~~~g~~YGts~~~V~~v~~~~gk~~iLdi~~~~~~~l~~~~~~pivIfI~pps~~~l 1584 (1659)
|||+.++++|++.++++.||++++++|+||||+..+|++++++ |+|||||++.+|+++|+.+++|||+|||+|.|.+.+
T Consensus 218 ~t~~~~~~eme~~~k~~~fI~~~q~~~~~~~tsv~si~~va~k-~~HCiLdv~~~ai~rLq~~~IyPIvIfIr~ks~~~i 296 (359)
T KOG0708|consen 218 ETLRPSREEMERDSKEETFIDAGQRSNGLYGTSVASIREVAEK-GKHCLLDVGGDAIRRLQRNQIYPIVIFIRVKSKKQI 296 (359)
T ss_pred hhhcccHHHhhhhcccCceeeecccCCCcceehHHHHHHHhcC-CCceEEecCcchHHHHHhcceeceEEEEEechHHHH
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHHcCCcceEEEeCCCCHHHHHHHHHHHHHhhcCCceEEeCC
Q psy3835 1585 KEIKEIRDGRYSSLDKVTAKAAKEMYEHGLKIECEHKHYISAVIPAGVNIAYMCTQIQTAVELEQSKTLWVPSL 1658 (1659)
Q Consensus 1585 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~~~e~~~~~~fd~vi~n~~~~~~~~~~l~~ii~~~~~~~~Wvp~~ 1658 (1659)
+++.. +.+.+++++++++|.++|++|+.+|+.+|.-+ +++.+|.+|+.+|.+||.+++|||+.
T Consensus 297 ~e~~~----------~~t~~~ake~~e~a~klEqe~~~~~t~vv~~~-s~e~i~~qvk~~I~~Eq~k~iWVp~~ 359 (359)
T KOG0708|consen 297 KERNL----------KITGEQAKELLERARKLEQELDRYFTLVVQGG-SLEELLSQVKDIIEDEQKKVIWVPAK 359 (359)
T ss_pred HHHhc----------ccchHHHHHHHHHHHHhHhhhhhceEEEEecc-cHHHHHHHHHHHHHHhhCCeEeeeCC
Confidence 98875 45788999999999999999999999999988 99999999999999999999999974
No 4
>KOG3209|consensus
Probab=100.00 E-value=6.8e-35 Score=341.73 Aligned_cols=358 Identities=21% Similarity=0.328 Sum_probs=274.3
Q ss_pred cccceEEecCcCCCCcCcccccC--CCCCCCCCCEEEEECCEeCCCCChHHHHHHHHhc--CCeEEEEEEeCCCCCcce-
Q psy3835 738 NGTGTILHPRRHKERLPLSALLN--NPPSYKVNDCIVRVNNLDCSNVSKRMVLETVRSS--GTSALMVIRRRRVGARSL- 812 (1659)
Q Consensus 738 ~glG~~i~gg~~~~~~~V~~v~p--~~g~l~~GD~Il~VNg~~~~~~~~~~~~~~l~~~--~~~v~l~v~R~~~~~~~~- 812 (1659)
.||||+|+.+-.. -.|..|.. .+-+|..||.|++||+..+..++|.+++++|+.+ |..+.|+|.|.++..+.-
T Consensus 495 egfgftiADsPtg--qrvK~ilDp~~c~gl~eGd~IVei~~rnvr~L~h~qvvdmlke~piG~r~~Llv~RGgp~s~~kt 572 (984)
T KOG3209|consen 495 EGFGFTIADSPTG--QRVKQILDPQDCPGLSEGDLIVEINERNVRALTHTQVVDMLKECPIGSRVHLLVKRGGPPSPSKT 572 (984)
T ss_pred CCCCceeccCCCC--CceeeecCcccCCCCCCCCeEEecccccccccchHHHHHHHHhccCCcceeEEEecCCCCCCCcC
Confidence 7999999987433 22777776 8999999999999999999999999999999995 789999999987432100
Q ss_pred ----------------------------------------------------------------------------EEEE
Q psy3835 813 ----------------------------------------------------------------------------VTTQ 816 (1659)
Q Consensus 813 ----------------------------------------------------------------------------~~~~ 816 (1659)
..+.
T Consensus 573 pk~~~r~~~~~s~~~s~sap~i~q~~Pfpp~~rs~~pd~t~~~~qrkpdp~~~we~Sraiyesr~~Ps~tsn~~pdk~ld 652 (984)
T KOG3209|consen 573 PKAADRKENQGSNQMSSSAPLIPQKLPFPPTSRSEEPDNTRNTLQRKPDPTEEWEKSRAIYESRMRPSSTSNQKPDKELD 652 (984)
T ss_pred cchhhhccCCCCccccccccccCCCCCCCCcccccCCcccccccccCCChHHHhhhcccchhccCCCCCccccCCcccee
Confidence 0122
Q ss_pred Eec-cCCCCcCeEecC------ceEEEEeCCCChhhhcCCCCCCCEEEEeCCcccCCcccHHHHHHHHhcCC--CeEEEE
Q psy3835 817 LQL-NNSYDHGLTLES------GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP--DVLTIT 887 (1659)
Q Consensus 817 i~~-~~~~~lG~~~~~------gi~I~~v~~gs~A~~~g~L~~GD~Il~ing~~v~~~~~~~ea~~~l~~~~--~~v~l~ 887 (1659)
+.+ +...||||.|-+ +|||..|.|+|+|+++|+|+.||.|+.|+|++|.+ .+|.+|+.++..+. +.|.|+
T Consensus 653 V~L~rkesGFGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~G-ksH~~vv~Lm~~AArnghV~Lt 731 (984)
T KOG3209|consen 653 VFLRRKESGFGFRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEG-KSHSEVVDLMEAAARNGHVNLT 731 (984)
T ss_pred EEEEeeccccceEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEecCeeccC-ccHHHHHHHHHHHHhcCceEEE
Confidence 333 456789999944 48999999999999999999999999999999999 99999999999875 899999
Q ss_pred EEccCCCCCCCCcccccccCCCCccCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q psy3835 888 TLKPTSLGEHSPRVHRKSVNSSTQTMPLYVRYGDQPPPDSYQVPKTSTKSHDPAKPSPSSSGGGGKWDSLREKMQGVRRR 967 (1659)
Q Consensus 888 v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ss~~~~g~~~~~~~~~~~~r~~ 967 (1659)
|.|..-.+.
T Consensus 732 VRRkv~~~~----------------------------------------------------------------------- 740 (984)
T KOG3209|consen 732 VRRKVRTGP----------------------------------------------------------------------- 740 (984)
T ss_pred Eeeeeeecc-----------------------------------------------------------------------
Confidence 988853100
Q ss_pred CCCCcCCCCCCCCCCCCCCchhhhhhhhccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCccc
Q psy3835 968 GGGEEGKRSNRNSSPPVTFEQEQVDAIAELDSFVHTHSPSDGSSPHYHKAPRSLASAHSHPGGPNNGAGGTSYETSSYHS 1047 (1659)
Q Consensus 968 ~~~~~~~r~~~~~spp~~~~p~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1659)
.| .+|
T Consensus 741 ------~~----rsp----------------------------------------------------------------- 745 (984)
T KOG3209|consen 741 ------AR----RSP----------------------------------------------------------------- 745 (984)
T ss_pred ------cc----CCc-----------------------------------------------------------------
Confidence 00 000
Q ss_pred cCCCCCccccccCccccCCCCCccccCCCCCCCCCCcccccccCCCCCCCcceeecCCCCcCCCCCCCCCCCCCCCCCCC
Q psy3835 1048 YDAAGTFPRKKENQRFRIPSNPSVAFKTSGTKMSNGSIEKTSERGSPMPTFHVEVLSPGLRQNKRNSLPDYCCSHKPHPG 1127 (1659)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~~~~~~~s~~~s~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1127 (1659)
.+ +. .+.
T Consensus 746 -------------------~~-s~-----------------------------------------------------~~~ 752 (984)
T KOG3209|consen 746 -------------------RN-SA-----------------------------------------------------APS 752 (984)
T ss_pred -------------------cc-cc-----------------------------------------------------CCC
Confidence 00 00 000
Q ss_pred CeEEEEEecC-CCCceEEEEecC-CCcEEEEEeCCCChhhhcC-CCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEE
Q psy3835 1128 ELRRVHIDKS-VEPLGIQIQCLD-SGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITM 1204 (1659)
Q Consensus 1128 ~~~~v~l~k~-~~~lG~sl~~~~-~~gv~I~~V~~gs~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l 1204 (1659)
.+..|.|++. +.||||.|.... ..+.-|..|.+||||+++| |++||+|++|||.++.+++|.+.+.+++.+|.+|+|
T Consensus 753 ~~yDV~lhR~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtL 832 (984)
T KOG3209|consen 753 GPYDVVLHRKENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTL 832 (984)
T ss_pred CCeeeEEecccCCceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEE
Confidence 1356788887 799999998872 1222399999999999999 999999999999999999999999999999999999
Q ss_pred EEEecCCccc--cccCC------------------CCCCCcc-----ccc---------CCCCCCCCeEEEEecCCcCcc
Q psy3835 1205 LVQYSPDKYH--ELEGS------------------GSSSAEN-----ESV---------SGRGSGEPRFLMIETRKCSNL 1250 (1659)
Q Consensus 1205 ~v~r~~~~~~--~~~~~------------------~~~~~~~-----~~~---------~~~~~~~~~~v~l~k~~~~~l 1250 (1659)
+|........ .+... ....++. .+. ..........|+|.+... +|
T Consensus 833 tIip~ee~~~~~~~~sa~~~s~~t~~~~~~q~~glp~~~~s~~~~~pqpdt~~~~~~~~r~~qn~~~~~VelErG~k-GF 911 (984)
T KOG3209|consen 833 TIIPPEEAGPPTSMTSAEKQSPFTQNGPYEQQYGLPGPRPSVYEEHPQPDTFQGLSINDRMSQNGDLYTVELERGAK-GF 911 (984)
T ss_pred EEcChhccCCCCCCcchhhcCcccccCCHhHccCCCCCCccccccCCCCccccceeccccccccCCeeEEEeecccc-cc
Confidence 9985322100 00000 0000000 000 011223456688888665 99
Q ss_pred CeEEecCCC--cceEEEEeCCCChhhh-cCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCeEEEEEEeC
Q psy3835 1251 GISLVGGNA--VGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYS 1318 (1659)
Q Consensus 1251 Gi~l~gg~~--~gi~V~~V~~gs~A~~-~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~r~ 1318 (1659)
||+|.||.. .++||-++..+|||.+ +.+++||+|++|||.+..+++|..|+.++++.+..|.|.+.++
T Consensus 912 GFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~vll~Lr~g 982 (984)
T KOG3209|consen 912 GFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRRVLLLLRRG 982 (984)
T ss_pred ceEeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeEEEEEeccC
Confidence 999999954 5899999999999999 7799999999999999999999999999877666666666554
No 5
>KOG3209|consensus
Probab=100.00 E-value=8e-34 Score=332.79 Aligned_cols=417 Identities=18% Similarity=0.231 Sum_probs=285.1
Q ss_pred cccceEEecCcC---CCCcCcccccC-----CCCCCCCCCEEEEECCEeCCCCChHHHHHHHHhc--CCeEEEEEEeCCC
Q psy3835 738 NGTGTILHPRRH---KERLPLSALLN-----NPPSYKVNDCIVRVNNLDCSNVSKRMVLETVRSS--GTSALMVIRRRRV 807 (1659)
Q Consensus 738 ~glG~~i~gg~~---~~~~~V~~v~p-----~~g~l~~GD~Il~VNg~~~~~~~~~~~~~~l~~~--~~~v~l~v~R~~~ 807 (1659)
.||||+|.||.+ +.++.|..|.+ ++|+|.+||.||.|||..+.+.||.+|+++++.. |..|.|++.|..+
T Consensus 355 ~GFGfTliGGdd~~gDefLqVKsvl~DGPAa~dGkle~GDviV~INg~cvlGhTHAqaV~~fqaiPvg~~V~L~lcRgye 434 (984)
T KOG3209|consen 355 MGFGFTLIGGDDVRGDEFLQVKSVLKDGPAAQDGKLETGDVIVHINGECVLGHTHAQAVKRFQAIPVGQSVDLVLCRGYE 434 (984)
T ss_pred cccceEEecCCcCCCCceeeeeecccCCchhhcCccccCcEEEEECCceeccccHHHHHHHhhccccCCeeeEEEecCcc
Confidence 799999999974 35666888887 9999999999999999999999999999999986 8999999999861
Q ss_pred CC----c----------------------------------------ceEEEEEec-cCCCCcCeEecC---ceEEEEeC
Q psy3835 808 GA----R----------------------------------------SLVTTQLQL-NNSYDHGLTLES---GLYICKIS 839 (1659)
Q Consensus 808 ~~----~----------------------------------------~~~~~~i~~-~~~~~lG~~~~~---gi~I~~v~ 839 (1659)
.. . ....+++.+ +|+.||||++.. |--|++|.
T Consensus 435 lp~dp~dp~~sp~~~iv~~~P~~~~~~~gp~v~~~~sss~~~a~~~~~~el~ti~i~kgpegfgftiADsPtgqrvK~il 514 (984)
T KOG3209|consen 435 LPFDPEDPVGSPRVAIVPSWPDSSTDKGGPMVTGRPSSSTHLAQHDGPPELTTIKIVKGPEGFGFTIADSPTGQRVKQIL 514 (984)
T ss_pred CCCCCcccCCCCccccccCCCCCCCCCCCCeeecCCCCccccccCCCCcccEEEeeecCCCCCCceeccCCCCCceeeec
Confidence 10 0 012334444 788999999964 44566655
Q ss_pred CCChhhhcCCCCCCCEEEEeCCcccCCcccHHHHHHHHhcCC--CeEEEEEEccCCCCCCCCcccccccCCCCccCcccc
Q psy3835 840 PGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP--DVLTITTLKPTSLGEHSPRVHRKSVNSSTQTMPLYV 917 (1659)
Q Consensus 840 ~gs~A~~~g~L~~GD~Il~ing~~v~~~~~~~ea~~~l~~~~--~~v~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 917 (1659)
- +-+ |-+|++||.|+.||+.++.. ++|.+++++|+.++ ..++|.|.|..+. ++....+ .++..
T Consensus 515 D--p~~-c~gl~eGd~IVei~~rnvr~-L~h~qvvdmlke~piG~r~~Llv~RGgp~---s~~ktpk------~~~r~-- 579 (984)
T KOG3209|consen 515 D--PQD-CPGLSEGDLIVEINERNVRA-LTHTQVVDMLKECPIGSRVHLLVKRGGPP---SPSKTPK------AADRK-- 579 (984)
T ss_pred C--ccc-CCCCCCCCeEEecccccccc-cchHHHHHHHHhccCCcceeEEEecCCCC---CCCcCcc------hhhhc--
Confidence 2 223 45699999999999999999 99999999999987 7899999998753 1100000 00000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCccccccccccccCCCCcCCCCCCCCCCCCCCchhhhhhhhc
Q psy3835 918 RYGDQPPPDSYQVPKTSTKSHDPAK-PSPSSSGGGGKWDSLREKMQGVRRRGGGEEGKRSNRNSSPPVTFEQEQVDAIAE 996 (1659)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~p~~-~~~ss~~~~g~~~~~~~~~~~~r~~~~~~~~~r~~~~~spp~~~~p~~~~~~~~ 996 (1659)
. .+.+ ..+++ .+. .+++ .+++|..
T Consensus 580 --~------------------~~~s~~~s~s------------------------ap~----i~q~-~Pfpp~~------ 604 (984)
T KOG3209|consen 580 --E------------------NQGSNQMSSS------------------------APL----IPQK-LPFPPTS------ 604 (984)
T ss_pred --c------------------CCCCcccccc------------------------ccc----cCCC-CCCCCcc------
Confidence 0 0000 00000 000 0000 0000000
Q ss_pred cccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCccccCCCCCccccccCccccCCCCCccccCCC
Q psy3835 997 LDSFVHTHSPSDGSSPHYHKAPRSLASAHSHPGGPNNGAGGTSYETSSYHSYDAAGTFPRKKENQRFRIPSNPSVAFKTS 1076 (1659)
Q Consensus 997 ~d~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s 1076 (1659)
.+..+ .....+.+++++ |.. .--
T Consensus 605 ----------------------------rs~~p------------------d~t~~~~qrkpd------p~~--~we--- 627 (984)
T KOG3209|consen 605 ----------------------------RSEEP------------------DNTRNTLQRKPD------PTE--EWE--- 627 (984)
T ss_pred ----------------------------cccCC------------------cccccccccCCC------hHH--Hhh---
Confidence 00000 000001122222 000 000
Q ss_pred CCCCCCCcccccccCCCCCCCcceeecCCCCcCCCCCCCCCCCCCCCCCCCCeEEEEEecCCCCceEEEEecC--CCcEE
Q psy3835 1077 GTKMSNGSIEKTSERGSPMPTFHVEVLSPGLRQNKRNSLPDYCCSHKPHPGELRRVHIDKSVEPLGIQIQCLD--SGGVF 1154 (1659)
Q Consensus 1077 ~~~~~~~s~~~s~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~k~~~~lG~sl~~~~--~~gv~ 1154 (1659)
-+.++..+... |+.+.. ..+.....|.|.+...||||.|-||. ..+++
T Consensus 628 ----~Sraiyesr~~------------------------Ps~tsn--~~pdk~ldV~L~rkesGFGFRiLGG~ep~qpi~ 677 (984)
T KOG3209|consen 628 ----KSRAIYESRMR------------------------PSSTSN--QKPDKELDVFLRRKESGFGFRILGGDEPGQPIY 677 (984)
T ss_pred ----hcccchhccCC------------------------CCCccc--cCCccceeEEEEeeccccceEEecCCCCCCeeE
Confidence 00001111000 000001 12336788999999999999999984 56899
Q ss_pred EEEeCCCChhhhcC-CCCCCEEEeeCCeecCCCCHHHHHHHHHhC--CCeEEEEEEecCCccccccCCCCCCCcccccCC
Q psy3835 1155 VSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQC--GNSITMLVQYSPDKYHELEGSGSSSAENESVSG 1231 (1659)
Q Consensus 1155 I~~V~~gs~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~~~~~~~~~~~~~~~~~~~~~ 1231 (1659)
|..|.+.|+|++.| |+.||.|++|+|++|.+.+|.+++.++..+ ...|.|+|.|.-..-. .. .++.. .
T Consensus 678 iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV~LtVRRkv~~~~--~~-rsp~~------s 748 (984)
T KOG3209|consen 678 IGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGHVNLTVRRKVRTGP--AR-RSPRN------S 748 (984)
T ss_pred EeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCceEEEEeeeeeecc--cc-CCccc------c
Confidence 99999999999999 999999999999999999999999999876 5689999988543110 00 01111 1
Q ss_pred CCCCCCeEEEEecCCcCccCeEEecC-CCcceEEEEeCCCChhhh-cCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCC
Q psy3835 1232 RGSGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPAD 1309 (1659)
Q Consensus 1232 ~~~~~~~~v~l~k~~~~~lGi~l~gg-~~~gi~V~~V~~gs~A~~-~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~ 1309 (1659)
.....+.-|.|++..+++|||.|... +..+.-|.+|.+||||++ +.|++||+|++|||+++.+++|...+.+++.++-
T Consensus 749 ~~~~~~yDV~lhR~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGl 828 (984)
T KOG3209|consen 749 AAPSGPYDVVLHRKENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGL 828 (984)
T ss_pred cCCCCCeeeEEecccCCceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCc
Confidence 22334677999999999999998754 222334999999999999 6699999999999999999999999999999999
Q ss_pred eEEEEEEeCcc
Q psy3835 1310 KVTVLAQYSVE 1320 (1659)
Q Consensus 1310 ~v~L~v~r~~~ 1320 (1659)
.|+|+|.+..+
T Consensus 829 sVtLtIip~ee 839 (984)
T KOG3209|consen 829 SVTLTIIPPEE 839 (984)
T ss_pred eEEEEEcChhc
Confidence 99999998643
No 6
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=9.3e-35 Score=301.76 Aligned_cols=166 Identities=16% Similarity=0.218 Sum_probs=157.6
Q ss_pred CCCcEEEECCCh---HHHHHHHhhhCCCcccccccceec--------------CChHHHHHhccCCceEEEEEeCCeeee
Q psy3835 1473 VLRPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMH--------------CPQAAMEKGLADNLFVDYRKKGAYFEC 1535 (1659)
Q Consensus 1473 ~~RpvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttr--------------vs~~~f~~~i~~~~flE~~~~~g~~YG 1535 (1659)
.+.++||+|||| +||+++|++.+ .|.+|||+||| +|+++|+++|+.++||||++|+|||||
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG 80 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG 80 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence 467899999998 99999999988 69999999998 999999999999999999999999999
Q ss_pred ecHHHHHHHHHcCCCeEEEEcChhHHHHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHH
Q psy3835 1536 TSVAAVKDACDKNNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLK 1615 (1659)
Q Consensus 1536 ts~~~V~~v~~~~gk~~iLdi~~~~~~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~~ 1615 (1659)
|++..|+.+++. |++||||||+||+++++...+..+.|||.|||+++|++|+. +|++++++.++++++.|..
T Consensus 81 T~~~~ve~~~~~-G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~-------~Rgtds~e~I~~Rl~~a~~ 152 (191)
T COG0194 81 TSREPVEQALAE-GKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLK-------GRGTDSEEVIARRLENAKK 152 (191)
T ss_pred CcHHHHHHHHhc-CCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHH-------ccCCCCHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999999999999999999999998 6789999999999999966
Q ss_pred HHHHcCCcceEEEeCCCCHHHHHHHHHHHHHhhcC
Q psy3835 1616 IECEHKHYISAVIPAGVNIAYMCTQIQTAVELEQS 1650 (1659)
Q Consensus 1616 ~e~~~~~~fd~vi~n~~~~~~~~~~l~~ii~~~~~ 1650 (1659)
|..+...|||+|+|| |++.|+.+|+.||..+..
T Consensus 153 -Ei~~~~~fdyvivNd-d~e~a~~~l~~ii~aer~ 185 (191)
T COG0194 153 -EISHADEFDYVIVND-DLEKALEELKSIILAERL 185 (191)
T ss_pred -HHHHHHhCCEEEECc-cHHHHHHHHHHHHHHHHH
Confidence 888888899999999 999999999999998744
No 7
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.97 E-value=6.5e-30 Score=281.08 Aligned_cols=166 Identities=22% Similarity=0.411 Sum_probs=155.6
Q ss_pred CCCcEEEECCCh---HHHHHHHhhhCCCcccccccceec--------------CChHHHHHhccCCceEEEEEeCCeeee
Q psy3835 1473 VLRPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMH--------------CPQAAMEKGLADNLFVDYRKKGAYFEC 1535 (1659)
Q Consensus 1473 ~~RpvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttr--------------vs~~~f~~~i~~~~flE~~~~~g~~YG 1535 (1659)
.+|||||+||+| ++|+++|++.+|+.|.++++|||| +|+++|+++|++|.|+||++|+||+||
T Consensus 1 ~~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YG 80 (184)
T smart00072 1 DRRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYG 80 (184)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcc
Confidence 368999999996 999999999999889999999998 799999999999999999999999999
Q ss_pred ecHHHHHHHHHcCCCeEEEEcChhHHHHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHH
Q psy3835 1536 TSVAAVKDACDKNNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLK 1615 (1659)
Q Consensus 1536 ts~~~V~~v~~~~gk~~iLdi~~~~~~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~~ 1615 (1659)
|++++|++++++ |++||||++++|+.+|+...++|++|||.|||.+.|++|+. .|+..+++++++++..|.+
T Consensus 81 t~~~~i~~~~~~-~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~-------~R~~~~~~~i~~rl~~a~~ 152 (184)
T smart00072 81 TSKETIRQVAEQ-GKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLR-------GRGTETAERIQKRLAAAQK 152 (184)
T ss_pred cCHHHHHHHHHc-CCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHH-------hcCCCCHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999999999999999999999988 4567788899999999877
Q ss_pred HHHHcCCcceEEEeCCCCHHHHHHHHHHHHHhh
Q psy3835 1616 IECEHKHYISAVIPAGVNIAYMCTQIQTAVELE 1648 (1659)
Q Consensus 1616 ~e~~~~~~fd~vi~n~~~~~~~~~~l~~ii~~~ 1648 (1659)
++..+ ++||++|+|+ |++.|+++|+++|..+
T Consensus 153 ~~~~~-~~fd~~I~n~-~l~~~~~~l~~~i~~~ 183 (184)
T smart00072 153 EAQEY-HLFDYVIVND-DLEDAYEELKEILEAE 183 (184)
T ss_pred HHhhh-ccCCEEEECc-CHHHHHHHHHHHHHhc
Confidence 66555 8899999999 9999999999999765
No 8
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.97 E-value=9e-30 Score=278.09 Aligned_cols=164 Identities=16% Similarity=0.263 Sum_probs=151.4
Q ss_pred CCCcEEEECCCh---HHHHHHHhhhCCCcccccccceec--------------CChHHHHHhccCCceEEEEEeCCeeee
Q psy3835 1473 VLRPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMH--------------CPQAAMEKGLADNLFVDYRKKGAYFEC 1535 (1659)
Q Consensus 1473 ~~RpvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttr--------------vs~~~f~~~i~~~~flE~~~~~g~~YG 1535 (1659)
.+++|||+|||| ++|+++|+..+|+ |.+++||||| ||+++|+++|++|.|+||++|+|||||
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~-~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG 81 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPD-FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG 81 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCc-cccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence 468899999998 9999999999988 6778999998 899999999999999999999999999
Q ss_pred ecHHHHHHHHHcCCCeEEEEcChhHHHHHHhcCCcc-EEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHH
Q psy3835 1536 TSVAAVKDACDKNNAHVILDVSLAGVERLHRQHVYP-IVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGL 1614 (1659)
Q Consensus 1536 ts~~~V~~v~~~~gk~~iLdi~~~~~~~l~~~~~~p-ivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~ 1614 (1659)
|++++|+.++++ |++||||++++|++.|+...+.+ ++|||.|||.+.+++|+. .|+..++++++++++.+.
T Consensus 82 t~~~~i~~~~~~-g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~-------~R~~~s~e~i~~Rl~~~~ 153 (186)
T PRK14737 82 TPKAFIEDAFKE-GRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLI-------HRGTDSEESIEKRIENGI 153 (186)
T ss_pred CcHHHHHHHHHc-CCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHH-------hcCCCCHHHHHHHHHHHH
Confidence 999999999999 99999999999999999876665 899999999999999887 456678889999999864
Q ss_pred HHHHHcCCcceEEEeCCCCHHHHHHHHHHHHHh
Q psy3835 1615 KIECEHKHYISAVIPAGVNIAYMCTQIQTAVEL 1647 (1659)
Q Consensus 1615 ~~e~~~~~~fd~vi~n~~~~~~~~~~l~~ii~~ 1647 (1659)
.|..+.++||++|+|+ |++.++.+|+.+|..
T Consensus 154 -~e~~~~~~~D~vI~N~-dle~a~~ql~~ii~~ 184 (186)
T PRK14737 154 -IELDEANEFDYKIIND-DLEDAIADLEAIICG 184 (186)
T ss_pred -HHHhhhccCCEEEECc-CHHHHHHHHHHHHhc
Confidence 6888999999999999 999999999999864
No 9
>PLN02772 guanylate kinase
Probab=99.97 E-value=9.3e-30 Score=297.66 Aligned_cols=178 Identities=16% Similarity=0.286 Sum_probs=161.8
Q ss_pred ceeeeccCC--CC-CCCcEEEECCCh---HHHHHHHhhhCCCcccccccceec--------------CChHHHHHhccCC
Q psy3835 1462 YQRVIRLNS--EP-VLRPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMH--------------CPQAAMEKGLADN 1521 (1659)
Q Consensus 1462 Ye~V~~~~~--~~-~~RpvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttr--------------vs~~~f~~~i~~~ 1521 (1659)
=|+|.++.+ |+ .++||||+|||| +||+++|+..+|..|.++++|||| +++++|++++++|
T Consensus 120 ~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g 199 (398)
T PLN02772 120 GTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDG 199 (398)
T ss_pred cceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhC
Confidence 477887774 34 789999999998 999999999999899999999999 8999999999999
Q ss_pred ceEEEEEeCCeeeeecHHHHHHHHHcCCCeEEEEcChhHHHHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcc
Q psy3835 1522 LFVDYRKKGAYFECTSVAAVKDACDKNNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKV 1601 (1659)
Q Consensus 1522 ~flE~~~~~g~~YGts~~~V~~v~~~~gk~~iLdi~~~~~~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~ 1601 (1659)
.|+||++|+||||||++++|+.++++ |++||||+|++|+++|+...+.|++|||.|||+++|++|+. .|+..
T Consensus 200 ~FlE~~e~~Gn~YGTsk~~V~~vl~~-Gk~vILdLD~qGar~Lr~~~l~~v~IFI~PPSlEeLe~RL~-------~RGte 271 (398)
T PLN02772 200 KFLEFASVHGNLYGTSIEAVEVVTDS-GKRCILDIDVQGARSVRASSLEAIFIFICPPSMEELEKRLR-------ARGTE 271 (398)
T ss_pred ccceeeeecCccccccHHHHHHHHHh-CCcEEEeCCHHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHH-------hcCCC
Confidence 99999999999999999999999999 99999999999999999988899999999999999999887 55677
Q ss_pred cHHHHHHHHHHHHH-HHH-HcCCcceEEEeCCCCHHHHHHHHHHHHHhh
Q psy3835 1602 TAKAAKEMYEHGLK-IEC-EHKHYISAVIPAGVNIAYMCTQIQTAVELE 1648 (1659)
Q Consensus 1602 ~~~~~~~~~~~a~~-~e~-~~~~~fd~vi~n~~~~~~~~~~l~~ii~~~ 1648 (1659)
+++++++|+..+.. ++. .+.++||++|+|| |++.|+++|+.+|...
T Consensus 272 seE~I~kRL~~A~~Ei~~~~~~~~fD~vIvND-dLe~A~~~L~~iL~~~ 319 (398)
T PLN02772 272 TEEQIQKRLRNAEAELEQGKSSGIFDHILYND-NLEECYKNLKKLLGLD 319 (398)
T ss_pred CHHHHHHHHHHHHHHHhhccccCCCCEEEECC-CHHHHHHHHHHHHhhc
Confidence 88999999988844 432 2467899999999 9999999999999754
No 10
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.97 E-value=1.3e-29 Score=278.86 Aligned_cols=163 Identities=27% Similarity=0.452 Sum_probs=146.3
Q ss_pred CCcEEEECCCh---HHHHHHHhhhCCCcccccccceec--------------CChHHHHHhccCCceEEEEEeCCeeeee
Q psy3835 1474 LRPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMH--------------CPQAAMEKGLADNLFVDYRKKGAYFECT 1536 (1659)
Q Consensus 1474 ~RpvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttr--------------vs~~~f~~~i~~~~flE~~~~~g~~YGt 1536 (1659)
+|||||+||+| ++|.++|++.+|+.|.++++|||| ||+++|++++++|+||||++|+|++|||
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt 81 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT 81 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence 69999999997 999999999999999999999998 8999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCCeEEEEcChhHHHHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHH
Q psy3835 1537 SVAAVKDACDKNNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLKI 1616 (1659)
Q Consensus 1537 s~~~V~~v~~~~gk~~iLdi~~~~~~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~~~ 1616 (1659)
+.++|+.++++ |++||||++++|+.+|+...++|++|||.|||.+.|+++++ .++..+.+.+.+ ++.++
T Consensus 82 ~~~~i~~~~~~-gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~-------~r~~~~~~~i~~---r~~~~ 150 (183)
T PF00625_consen 82 SKSAIDKVLEE-GKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLR-------RRGDESEEEIEE---RLERA 150 (183)
T ss_dssp EHHHHHHHHHT-TTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHH-------TTTHCHHHHHHH---HHHHH
T ss_pred ccchhhHhhhc-CCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHh-------ccccccHHHHHH---HHHHH
Confidence 99999999999 99999999999999999999999999999999999999887 334444444444 44455
Q ss_pred HHHcCCc--ceEEEeCCCCHHHHHHHHHHHHHhh
Q psy3835 1617 ECEHKHY--ISAVIPAGVNIAYMCTQIQTAVELE 1648 (1659)
Q Consensus 1617 e~~~~~~--fd~vi~n~~~~~~~~~~l~~ii~~~ 1648 (1659)
+..+.++ ||++|+|+ +++.|+.+|+++|.++
T Consensus 151 ~~~~~~~~~fd~vi~n~-~le~~~~~l~~ii~~~ 183 (183)
T PF00625_consen 151 EKEFEHYNEFDYVIVND-DLEEAVKELKEIIEQE 183 (183)
T ss_dssp HHHHGGGGGSSEEEECS-SHHHHHHHHHHHHHHH
T ss_pred HHHHhHhhcCCEEEECc-CHHHHHHHHHHHHHhC
Confidence 6677777 99999999 9999999999999864
No 11
>KOG3580|consensus
Probab=99.95 E-value=4.5e-27 Score=270.54 Aligned_cols=155 Identities=26% Similarity=0.402 Sum_probs=136.5
Q ss_pred cccceEEecCcCCCCcC-------cccccC---CCCCCCCCCEEEEECCEeCCCCChHHHHHHHHhcCCeEEEEEEeCCC
Q psy3835 738 NGTGTILHPRRHKERLP-------LSALLN---NPPSYKVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRV 807 (1659)
Q Consensus 738 ~glG~~i~gg~~~~~~~-------V~~v~p---~~g~l~~GD~Il~VNg~~~~~~~~~~~~~~l~~~~~~v~l~v~R~~~ 807 (1659)
-|||+.|.||.|++++. |++|.| ++|.|+.||+|+.|||+++.+..|.-|++.|+.||....++|.|.+.
T Consensus 20 rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAeG~LQenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRprk 99 (1027)
T KOG3580|consen 20 RGFGIAISGGRDNPHFENGETSIVISDVLPGGPAEGLLQENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPRK 99 (1027)
T ss_pred CcceeEeecCCCCCCccCCceeEEEeeccCCCCcccccccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecccce
Confidence 69999999999999984 899999 99999999999999999999999999999999999999999998761
Q ss_pred C-------Ccce--------------------------------------------------------------------
Q psy3835 808 G-------ARSL-------------------------------------------------------------------- 812 (1659)
Q Consensus 808 ~-------~~~~-------------------------------------------------------------------- 812 (1659)
. ...+
T Consensus 100 vqvpa~~asPp~s~~~r~~~ded~~d~Rs~rsg~~~r~~~~s~~grsrsw~~~~er~rP~~R~rsrer~ls~~~~gprs~ 179 (1027)
T KOG3580|consen 100 VQVPALQASPPLSQDDRAFEDEDEFDGRSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERARSRERDLSRDRRGPRSR 179 (1027)
T ss_pred eeccccCCCCCCCCccccccchhccCcccccccccccccccccCCcccccccccccCCccccccccccccccCCCCCccc
Confidence 1 0000
Q ss_pred ------------------EEEEEec---cCCCCcCeEecCceEEEEeCCCChhhhcCCCCCCCEEEEeCCcccCCcccHH
Q psy3835 813 ------------------VTTQLQL---NNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAR 871 (1659)
Q Consensus 813 ------------------~~~~i~~---~~~~~lG~~~~~gi~I~~v~~gs~A~~~g~L~~GD~Il~ing~~v~~~~~~~ 871 (1659)
.++.+.+ ..+.-||+.+...|||+.|...|.|+++|.|+.||.||.|||...++ |++.
T Consensus 180 ~r~~~ss~~~~p~p~~~~~p~kv~LvKsR~nEEyGlrLgSqIFvKeit~~gLAardgnlqEGDiiLkINGtvteN-mSLt 258 (1027)
T KOG3580|consen 180 SREHPSSRSPSPEPRGRPGPIKVLLVKSRANEEYGLRLGSQIFVKEITRTGLAARDGNLQEGDIILKINGTVTEN-MSLT 258 (1027)
T ss_pred ccccccCCCCCCCccCCCCcceEEEEeeccchhhcccccchhhhhhhcccchhhccCCcccccEEEEECcEeecc-ccch
Confidence 1233333 44566888889999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhcCCCeEEEEEEccCC
Q psy3835 872 EGMALLSDSPDVLTITTLKPTS 893 (1659)
Q Consensus 872 ea~~~l~~~~~~v~l~v~r~~~ 893 (1659)
+|..+|..+.+.+.|+|.|...
T Consensus 259 Dar~LIEkS~GKL~lvVlRD~~ 280 (1027)
T KOG3580|consen 259 DARKLIEKSRGKLQLVVLRDSQ 280 (1027)
T ss_pred hHHHHHHhccCceEEEEEecCC
Confidence 9999999999999999999864
No 12
>KOG0707|consensus
Probab=99.92 E-value=2.5e-25 Score=238.92 Aligned_cols=176 Identities=18% Similarity=0.212 Sum_probs=158.8
Q ss_pred eeccCCCCCCCcEEEECCCh---HHHHHHHhhhCCCcccccccceec--------------CChHHHHHhccCCceEEEE
Q psy3835 1465 VIRLNSEPVLRPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMH--------------CPQAAMEKGLADNLFVDYR 1527 (1659)
Q Consensus 1465 V~~~~~~~~~RpvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttr--------------vs~~~f~~~i~~~~flE~~ 1527 (1659)
+...-+|...+||||+||+| .++.++|++++|..|+++|+|||| +++++|+.+++++.|+||+
T Consensus 28 ~~~~~~p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a 107 (231)
T KOG0707|consen 28 VSPQTPPGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFA 107 (231)
T ss_pred eccccCCCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhh
Confidence 34444445669999999998 999999999999999999999998 8999999999999999999
Q ss_pred EeCCeeeeecHHHHHHHHHcCCCeEEEEcChhHHHHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHH
Q psy3835 1528 KKGAYFECTSVAAVKDACDKNNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAK 1607 (1659)
Q Consensus 1528 ~~~g~~YGts~~~V~~v~~~~gk~~iLdi~~~~~~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~ 1607 (1659)
.+.||+|||++++|+++... |+.|+|||+.+|+..++...+.+++|||.|||...+++|++ .|++++++++.
T Consensus 108 ~~~gn~yGtsi~av~~~~~~-gk~~ildId~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~-------~rgte~~~~l~ 179 (231)
T KOG0707|consen 108 TFSGNKYGTSIAAVQRLMLS-GKVCILDIDLQGVQPIRATSLDAIYIFIKPPSIKILEERLR-------ARGTETEESLL 179 (231)
T ss_pred hhhcccCCchHHHHHHHHhc-CCcceeehhhcCceeeecCCCceEEEEecCCcchhHHHHhh-------ccCcchHHHHH
Confidence 99999999999999999999 99999999999999999999999999999999999999998 55688888999
Q ss_pred HHHHHHHHHHHHcCC---cceEEEeC-CCCHHHHHHHHHHHHHhhcC
Q psy3835 1608 EMYEHGLKIECEHKH---YISAVIPA-GVNIAYMCTQIQTAVELEQS 1650 (1659)
Q Consensus 1608 ~~~~~a~~~e~~~~~---~fd~vi~n-~~~~~~~~~~l~~ii~~~~~ 1650 (1659)
+++. +...|..+.. .||++|+| + ++++++.++..++..+..
T Consensus 180 ~r~~-sa~~e~~~~~~~g~~d~~~~ns~-~lee~~kel~~~~~~~~~ 224 (231)
T KOG0707|consen 180 KRLK-SAEEEFEILENSGSFDLVIVNSD-RLEEAYKELEIFISSDDK 224 (231)
T ss_pred HHHH-hhhhhhccccCCccccceecCCC-chhhhhhhhhhhhhHHHH
Confidence 9998 4455666655 49999999 7 999999999999876543
No 13
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.88 E-value=1.6e-21 Score=218.13 Aligned_cols=167 Identities=13% Similarity=0.139 Sum_probs=145.9
Q ss_pred CCCCcEEEECCCh---HHHHHHHhhhCCCcccccccceec--------------CChHHHHHhccCCceEEEEEeCCeee
Q psy3835 1472 PVLRPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMH--------------CPQAAMEKGLADNLFVDYRKKGAYFE 1534 (1659)
Q Consensus 1472 ~~~RpvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttr--------------vs~~~f~~~i~~~~flE~~~~~g~~Y 1534 (1659)
+.+++|||+||+| +||++.|.+..+ .|.++++|||| +|+++|++++.+|.|+||++++||+|
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~Y 89 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRERKL-PFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYY 89 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhcCC-cccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCcee
Confidence 6789999999998 999999987665 59999999997 79999999999999999999999999
Q ss_pred eecHHHHHHHHHcCCCeEEEEcChhHHHHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHH
Q psy3835 1535 CTSVAAVKDACDKNNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGL 1614 (1659)
Q Consensus 1535 Gts~~~V~~v~~~~gk~~iLdi~~~~~~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~ 1614 (1659)
||++++|+.++++ |++|||+++++|+..|+...+.+++||+.|||.++|++|+. .|+..+.+++.+++..+.
T Consensus 90 Gt~~~~i~~~~~~-g~~vi~~~~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~-------~R~~~~~~~~~~Rl~~~~ 161 (206)
T PRK14738 90 GVPKAPVRQALAS-GRDVIVKVDVQGAASIKRLVPEAVFIFLAPPSMDELTRRLE-------LRRTESPEELERRLATAP 161 (206)
T ss_pred cCCHHHHHHHHHc-CCcEEEEcCHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHH-------HcCCCCHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999888888999999999999999887 334456667878887664
Q ss_pred HHHHHcCCcceEEEeCC-CCHHHHHHHHHHHHHhh
Q psy3835 1615 KIECEHKHYISAVIPAG-VNIAYMCTQIQTAVELE 1648 (1659)
Q Consensus 1615 ~~e~~~~~~fd~vi~n~-~~~~~~~~~l~~ii~~~ 1648 (1659)
. +......||++++|. .+++.++++|.++|..+
T Consensus 162 ~-e~~~~~~~~~~iId~~~~~e~v~~~i~~~l~~~ 195 (206)
T PRK14738 162 L-ELEQLPEFDYVVVNPEDRLDEAVAQIMAIISAE 195 (206)
T ss_pred H-HHhcccCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 3 334445689999984 38999999999999876
No 14
>KOG0996|consensus
Probab=99.84 E-value=6.9e-17 Score=202.37 Aligned_cols=317 Identities=16% Similarity=0.186 Sum_probs=217.5
Q ss_pred ccccCCcCCCcEEEEeCCcccCCCCCHHHHHHHhhc-------------CCCeEEEEEecCCCcCCC------------C
Q psy3835 220 AAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSD-------------SPDVLTITTLKPTSLGEH------------S 274 (1659)
Q Consensus 220 a~~dg~l~~gd~i~~in~~~~~~~~s~~e~~~~l~~-------------~~~~~~i~~~k~~~~~~~------------~ 274 (1659)
|.+|++= -..|||+. .|+++++++|++ ||+|.+|++|||++..+| |
T Consensus 191 A~~~NsS-----kY~Ingk~----as~~~V~~lLk~~gIDleHNRFLILQGEVE~IA~MKPk~~~e~d~GmLEYLEDIIG 261 (1293)
T KOG0996|consen 191 AFRDNSS-----KYYINGKE----ASFKDVTKLLKSHGIDLEHNRFLILQGEVEQIAMMKPKAQTENDEGMLEYLEDIIG 261 (1293)
T ss_pred hhhCCCc-----eEeECCcc----ccHHHHHHHHHhcCCCCccceeeeehhhHHHHHhcCCCCCCCCcchHHHHHHHHhc
Confidence 5665543 37899999 799999999999 999999999999999876 9
Q ss_pred CCCCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 275 PRVHRKSVNSSTQTMPLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLE 354 (1659)
Q Consensus 275 ~~~~~~~i~~~~~Ele~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~ 354 (1659)
|+.|+++|.+.+.+++.|++.+.++.++++.+++++..++....+.. +-|+.+.+-+..+-...+.-+.+...
T Consensus 262 T~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al---~fL~kenel~~~~~~~~q~~~~~~~~---- 334 (1293)
T KOG0996|consen 262 TNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEAL---EFLKKENELFRKKNKLCQYILYESRA---- 334 (1293)
T ss_pred ccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 99999999999999999999999999999999999888877663322 22222222221111111111111111
Q ss_pred HhhccCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 355 LRSGCCTQPESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINT-HSTAVDKLELAQEEVARIKKQCEDMNQE 433 (1659)
Q Consensus 355 lk~~~~~~e~~~~~~~~~~l~~~~~~le~~le~l~~e~~~l~~~~~el~~~-l~~~~~~le~leeel~~lk~e~~~l~~~ 433 (1659)
.+....+.+..++..+......++....+..+..+. ....++....+.+....++.++.+++.+
T Consensus 335 ---------------ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~ 399 (1293)
T KOG0996|consen 335 ---------------KIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLERE 399 (1293)
T ss_pred ---------------HHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122223333344444444444444233333222222 2335555555666777888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 434 KNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSL 513 (1659)
Q Consensus 434 ~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~ 513 (1659)
....++.++.+.+++.+++++++....++.+++...+..+.++.+++.++..+...+..++.++++....++ .+-..
T Consensus 400 ~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~---~~t~~ 476 (1293)
T KOG0996|consen 400 DVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLK---QETEG 476 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhh
Confidence 888888888888888888888888888888888888888888888888888888777777666666554444 34444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHH
Q psy3835 514 IMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASA 570 (1659)
Q Consensus 514 l~~e~~~l~~el~~L~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l 570 (1659)
+.+++..+++++..+..++.++..++..++.++..+....+...+.++.|+..+...
T Consensus 477 ~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~ 533 (1293)
T KOG0996|consen 477 IREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLAS 533 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777777777777777777776666666666666665555554444
No 15
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.79 E-value=3.2e-18 Score=188.23 Aligned_cols=161 Identities=12% Similarity=0.227 Sum_probs=145.5
Q ss_pred CcEEEECCCh---HHHHHHHhhhCCCcccccccceec--------------CChHHHHHhccCCceEEEEEeCCeeeeec
Q psy3835 1475 RPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMH--------------CPQAAMEKGLADNLFVDYRKKGAYFECTS 1537 (1659)
Q Consensus 1475 RpvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttr--------------vs~~~f~~~i~~~~flE~~~~~g~~YGts 1537 (1659)
++|+|+||+| +||.+.|...+|. +..++++||| ++.+.|..++..+.|++|..+.+++||++
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~-~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 80 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN-LKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP 80 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc-ccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence 6899999998 9999999998887 6778999997 57789999999999999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEcChhHHHHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHH
Q psy3835 1538 VAAVKDACDKNNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLKIE 1617 (1659)
Q Consensus 1538 ~~~V~~v~~~~gk~~iLdi~~~~~~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~~~e 1617 (1659)
...|+.++++ |++||||+++.|+..++...+.|++||+.||+.+.++.|++ .|+..++++++++++.+. .+
T Consensus 81 ~~~i~~~~~~-g~~vi~d~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~-------~r~~~~~~~i~~rl~~~~-~~ 151 (180)
T TIGR03263 81 KSPVEEALAA-GKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLR-------KRGTDSEEVIERRLAKAK-KE 151 (180)
T ss_pred HHHHHHHHHC-CCeEEEECCHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH-------HcCCCCHHHHHHHHHHHH-HH
Confidence 9999999999 99999999999999999988889999999999999999887 344567788999998775 35
Q ss_pred HHcCCcceEEEeCCCCHHHHHHHHHHHHH
Q psy3835 1618 CEHKHYISAVIPAGVNIAYMCTQIQTAVE 1646 (1659)
Q Consensus 1618 ~~~~~~fd~vi~n~~~~~~~~~~l~~ii~ 1646 (1659)
..+.+.||++|+|+ |+++++.+|++++.
T Consensus 152 ~~~~~~~d~~i~n~-~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 152 IAHADEFDYVIVND-DLEKAVEELKSIIL 179 (180)
T ss_pred HhccccCcEEEECC-CHHHHHHHHHHHHh
Confidence 67888999999999 99999999999885
No 16
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.75 E-value=1.1e-17 Score=174.12 Aligned_cols=119 Identities=18% Similarity=0.318 Sum_probs=113.5
Q ss_pred cEEEECCCh---HHHHHHHhhhCCCcccccccceec--------------CChHHHHHhccCCceEEEEEeCCeeeeecH
Q psy3835 1476 PVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMH--------------CPQAAMEKGLADNLFVDYRKKGAYFECTSV 1538 (1659)
Q Consensus 1476 pvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttr--------------vs~~~f~~~i~~~~flE~~~~~g~~YGts~ 1538 (1659)
||+|+||+| +||++.|...+|..|..+++|||| ++.++|.+++..+.|+||++++||+||++.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~ 80 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK 80 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence 689999997 999999999988889999999998 699999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEEcChhHHHHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHH
Q psy3835 1539 AAVKDACDKNNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLKIEC 1618 (1659)
Q Consensus 1539 ~~V~~v~~~~gk~~iLdi~~~~~~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~~~e~ 1618 (1659)
++|++++++ |++||||++++|+.+|+...+.|++|||.||
T Consensus 81 ~~i~~~~~~-g~~~il~~~~~~~~~l~~~~~~~~~I~i~~~--------------------------------------- 120 (137)
T cd00071 81 AAVEEALAE-GKIVILEIDVQGARQVKKSYPDAVSIFILPP--------------------------------------- 120 (137)
T ss_pred HHHHHHHhC-CCeEEEEecHHHHHHHHHcCCCeEEEEEECC---------------------------------------
Confidence 999999999 9999999999999999999999999999996
Q ss_pred HcCCcceEEEeCCCCHHHHHHHH
Q psy3835 1619 EHKHYISAVIPAGVNIAYMCTQI 1641 (1659)
Q Consensus 1619 ~~~~~fd~vi~n~~~~~~~~~~l 1641 (1659)
|++|+|+ |+++++++|
T Consensus 121 ------~~~~~~~-~~~~~~~~~ 136 (137)
T cd00071 121 ------DYVIVND-DLEKAYEEL 136 (137)
T ss_pred ------CeEEeCC-CHHHHHHhh
Confidence 9999999 999998876
No 17
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.74 E-value=4.8e-17 Score=182.89 Aligned_cols=166 Identities=13% Similarity=0.198 Sum_probs=149.2
Q ss_pred CCCcEEEECCCh---HHHHHHHhhhCCCcccccccceec--------------CChHHHHHhccCCceEEEEEeCCeeee
Q psy3835 1473 VLRPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMH--------------CPQAAMEKGLADNLFVDYRKKGAYFEC 1535 (1659)
Q Consensus 1473 ~~RpvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttr--------------vs~~~f~~~i~~~~flE~~~~~g~~YG 1535 (1659)
..+.|+|+||+| +||.+.|...+| .|...+++||| ++.++|.+++..+.|++++.+.+++||
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~-~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 82 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP-NLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYG 82 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc-cceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCcccc
Confidence 457899999998 999999999888 58889999997 588999999999999999999999999
Q ss_pred ecHHHHHHHHHcCCCeEEEEcChhHHHHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHH
Q psy3835 1536 TSVAAVKDACDKNNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLK 1615 (1659)
Q Consensus 1536 ts~~~V~~v~~~~gk~~iLdi~~~~~~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~~ 1615 (1659)
++...|..+++. |++||+|++++|+..++...+.+++||+.||+.+.+++|+. .|+..+++.+++++..+..
T Consensus 83 ~~~~~i~~~l~~-g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~-------~R~~~~~~~i~~rl~~~~~ 154 (205)
T PRK00300 83 TPRSPVEEALAA-GKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELERRLR-------GRGTDSEEVIARRLAKARE 154 (205)
T ss_pred CcHHHHHHHHHc-CCeEEEeCCHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHH-------hcCCCCHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999988889999999999999999887 4456778889998877653
Q ss_pred HHHHcCCcceEEEeCCCCHHHHHHHHHHHHHhhc
Q psy3835 1616 IECEHKHYISAVIPAGVNIAYMCTQIQTAVELEQ 1649 (1659)
Q Consensus 1616 ~e~~~~~~fd~vi~n~~~~~~~~~~l~~ii~~~~ 1649 (1659)
+.++.+.||++|+|+ ++++++.+|..++..+.
T Consensus 155 -~~~~~~~~d~vi~n~-~~e~~~~~l~~il~~~~ 186 (205)
T PRK00300 155 -EIAHASEYDYVIVND-DLDTALEELKAIIRAER 186 (205)
T ss_pred -HHHhHHhCCEEEECC-CHHHHHHHHHHHHHHHH
Confidence 556667899999999 99999999999998763
No 18
>KOG3812|consensus
Probab=99.60 E-value=6.6e-15 Score=161.56 Aligned_cols=274 Identities=17% Similarity=0.249 Sum_probs=171.9
Q ss_pred CcceeeeccccCCCCCc-----cccccccCCcEEEEecCCCCCCCCcEEEEEeccCCCcccccCcCChhHHHHHHHHHhh
Q psy3835 1331 DSFYMRALFSRTGDLGD-----ALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYKVEEELLLRRS 1405 (1659)
Q Consensus 1331 ~~~yvra~f~y~~~~~~-----~~~L~f~~gdil~v~~t~~~~~~~~W~a~~v~~~~~~~~~GlIPs~~~~e~~~~~~~~ 1405 (1659)
-.|-|+++.+|++..|+ ..+.+|...|.|||... | ..+||-.+.|.+.+ +.|+|||+.+.|.-.+..
T Consensus 57 VAFAV~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeK-y--nnDWWIGRlVkeg~---e~gFiPsp~rLen~r~~~-- 128 (475)
T KOG3812|consen 57 VAFAVRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEK-Y--NNDWWIGRLVKEGC---EIGFIPSPVRLENIRLQQ-- 128 (475)
T ss_pred ceEEEEeccccCCccCCCCCCCCceeeeccccceeehhh-c--ccchhHHHHhhcCC---ccccccchHHHHHHHhhh--
Confidence 46889999999987775 67999999999999875 3 34599998887653 599999999887632221
Q ss_pred ccccccccccccccc----cccccccccccchhhhccccCCCCccCCCCCCCcCccccccceeeeccCCCCCCCcEEEEC
Q psy3835 1406 LGDLESDARRATRRS----FFRRKKHQRSDSKELASFSNINLGWYSDSGTLNEDSVSLASYQRVIRLNSEPVLRPVILVG 1481 (1659)
Q Consensus 1406 ~~~~~~~~~~~~r~~----~~~rkk~~r~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ye~V~~~~~~~~~RpvVl~G 1481 (1659)
++ .++.+...+ ...|+.. |..+.+..+-. -..+.+||..| +..|||||+|
T Consensus 129 -e~---~~~~~~n~ssl~~vg~r~st---------------pp~ta~~kd~~-~~E~~pPYdVV------PSmRPvVLvG 182 (475)
T KOG3812|consen 129 -EQ---SSKSSGNSSSLGDVGSRRST---------------PPSTADQKDKS-ITEHVPPYDVV------PSMRPVVLVG 182 (475)
T ss_pred -hh---hcccCCCccccCCcccCCCC---------------CCChhhhhhhh-hcccCCccccC------CCCCceEEec
Confidence 11 111111111 0011100 11111111100 02466788877 6889999999
Q ss_pred CCh-----HHHHH-HHhhhCCCcccccccce--ec-CCh--HHHHHhccCCceEEEEEeC--CeeeeecHHHHHHHHHcC
Q psy3835 1482 ALS-----DTVTD-KLLQDFPDKFVRCAPEI--MH-CPQ--AAMEKGLADNLFVDYRKKG--AYFECTSVAAVKDACDKN 1548 (1659)
Q Consensus 1482 p~g-----~~l~~-~Ll~~~p~~f~~~v~~T--tr-vs~--~~f~~~i~~~~flE~~~~~--g~~YGts~~~V~~v~~~~ 1548 (1659)
|+- +-+++ .|.+..-.+|.--++-| |- ++- ....+.-.....+|-..-. +.-.-+-++-|-+.+..
T Consensus 183 PsLkgyevTdmmqkAlfd~lkhrF~grisitrVtaDIslakrS~lnnp~k~~~~eRsn~RsslaevqsEiErIfelars- 261 (475)
T KOG3812|consen 183 PSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELARS- 261 (475)
T ss_pred CccccccHHHHHHHHHHHHHHHhcCCceeEEEEeechhhhhhhhccCccceeeeeeccchhhHHHHHHHHHHHHHHHhh-
Confidence 994 33333 44444445677444333 22 221 1122222222333332111 11112223445556666
Q ss_pred CCeEEEEcC-hhHHHHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHHcCCcceEE
Q psy3835 1549 NAHVILDVS-LAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLKIECEHKHYISAV 1627 (1659)
Q Consensus 1549 gk~~iLdi~-~~~~~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~~~e~~~~~~fd~v 1627 (1659)
=..++||.+ ++--.+|....+.||++||+..|.+.|.++++ .+++.-.+...-.+-.+.++++.....||.|
T Consensus 262 LqLvvlDadtInhPaql~ktsLaPI~v~ikvSspKvLqrLir-------srGksq~K~lnvq~va~~klaQc~~e~Fdvi 334 (475)
T KOG3812|consen 262 LQLVVLDADTINHPAQLAKTSLAPIIVYIKVSSPKVLQRLIR-------SRGKSQSKHLNVQMVAADKLAQCPPEGFDVI 334 (475)
T ss_pred ceEEEecCCcCCCHHHhccCCCcceEEEEEeCCHHHHHHHHH-------hcCchhhhhchHhhhhcchhhhCChhhhhee
Confidence 677888876 56667888888999999999999999999988 4555544455555666778888888899999
Q ss_pred EeCCCCHHHHHHHHHHHHHh
Q psy3835 1628 IPAGVNIAYMCTQIQTAVEL 1647 (1659)
Q Consensus 1628 i~n~~~~~~~~~~l~~ii~~ 1647 (1659)
|..+ .|+.||+.|.+.++.
T Consensus 335 ldEN-qLedAcehla~yLEa 353 (475)
T KOG3812|consen 335 LDEN-QLEDACEHLAEYLEA 353 (475)
T ss_pred eccc-cHHHHHHHHHHHHHH
Confidence 9988 999999999888864
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.59 E-value=9.8e-12 Score=172.40 Aligned_cols=356 Identities=20% Similarity=0.268 Sum_probs=232.8
Q ss_pred CHHHHHHHhhcCCCeEEEEEecCCCcCC-----CCCCCCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 245 SAREGMALLSDSPDVLTITTLKPTSLGE-----HSPRVHRKSVNSSTQTMPLYVRQHNETVRRGDHTLKELEYYRGQHQA 319 (1659)
Q Consensus 245 s~~e~~~~l~~~~~~~~i~~~k~~~~~~-----~~~~~~~~~i~~~~~Ele~L~~q~~E~~~rl~~le~El~~l~~~l~e 319 (1659)
+.+.|..+....+-...|+.+--..+.. .|+......+.... ++..|..++......+..+..++..++..+..
T Consensus 621 ~l~~A~~l~~~~~~~~riVTl~G~~~~~~G~~tGG~~~~~~~~~~~~-~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 699 (1163)
T COG1196 621 DLEQARRLARKLRIKYRIVTLDGDLVEPSGSITGGSRNKRSSLAQKR-ELKELEEELAELEAQLEKLEEELKSLKNELRS 699 (1163)
T ss_pred CHHHHHHHHHhcCCCceEEecCCcEEeCCeeeecCCccccchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888888876566665554433332 24333333333333 56666777777777777777777766666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 320 AMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRS--GCCTQPESDDAGSADSLNQHYMSALNKYETIKDEYDALRK 397 (1659)
Q Consensus 320 l~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk~--~~~~~e~~~~~~~~~~l~~~~~~le~~le~l~~e~~~l~~ 397 (1659)
+...+..++.+...+..++..+..++..++.+..++.. ..+..++..+......++..+..+...+..+.+....++.
T Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 779 (1163)
T COG1196 700 LEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKE 779 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666555555555554442 1111122223333444445555555555555555555555
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 398 RFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHE 477 (1659)
Q Consensus 398 ~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~el~~eie 477 (1659)
.++.+..........+..++.++...+.++..+..++.......+.+..++..+..+...++.++..+...+..++..+.
T Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 859 (1163)
T COG1196 780 EIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELE 859 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 55555555555556666666666666666666677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHH---
Q psy3835 478 DAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKK--- 554 (1659)
Q Consensus 478 ele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~le~el~~l~~e~~--- 554 (1659)
++..++..++.....+...+..++.++..+..++..+..++..+..+.+.+...+..+..+...+...+........
T Consensus 860 ~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 939 (1163)
T COG1196 860 ELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEY 939 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 77777777777777777777777777777777777777777777777777777776666666666555433333221
Q ss_pred ------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 555 ------TLSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAAKEECQRE 601 (1659)
Q Consensus 555 ------~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~~~~e~q~e 601 (1659)
.++.++..++.++..++++|..++++|+.+.+||..+....+.+...
T Consensus 940 ~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a 992 (1163)
T COG1196 940 EDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEA 992 (1163)
T ss_pred ccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999998875554444
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.57 E-value=5.6e-11 Score=165.00 Aligned_cols=251 Identities=18% Similarity=0.237 Sum_probs=161.8
Q ss_pred eecceecccCCCCCccccc-ceEEEEeCCCCcccccCCcCCCcEEEEeCCcccCCCCCHHHHHHHhhc------------
Q psy3835 189 YLDGLQLNNSYDHGLTLES-GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSD------------ 255 (1659)
Q Consensus 189 ~~~~l~~~~~~~~g~~~~~-~~~v~~i~~g~~a~~dg~l~~gd~i~~in~~~~~~~~s~~e~~~~l~~------------ 255 (1659)
-.+.|.|+++. .+++.+- -|.|+.-.-. .|+--..|||+. .+..++..++..
T Consensus 78 A~V~l~fdN~d-~~~~~~~~ei~v~Rri~r----------~g~S~Y~INg~~----~~~~dI~~l~~~~gi~~~~~~iV~ 142 (1163)
T COG1196 78 AEVELTFDNSD-NTLPLEYEEISVTRRIYR----------DGESEYYINGEK----VRLKDIQDLLADSGIGKESYSIVS 142 (1163)
T ss_pred eEEEEEEeCCC-CcCCcccceEEEEEEEEE----------cCCcEEEECCcE----eeHHHHHHHHHhcCCCCCCCceee
Confidence 45667776543 3333322 3555554322 255677899999 579999999988
Q ss_pred CCCeEEEEEecCCCcCCCCCCCCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 256 SPDVLTITTLKPTSLGEHSPRVHRKSVNSSTQTMPLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLR 335 (1659)
Q Consensus 256 ~~~~~~i~~~k~~~~~~~~~~~~~~~i~~~~~Ele~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~ 335 (1659)
||++..|.-|||.... ..++++. =+..|+.++.+++.+++.++.+++.+...+.++..+++.|+.++...+
T Consensus 143 QG~V~~i~~~kp~err--------~iiEEaa-Gv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~ 213 (1163)
T COG1196 143 QGKVEEIINAKPEERR--------KLIEEAA-GVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAE 213 (1163)
T ss_pred cccHHHHHcCCHHHHH--------HHHHHHh-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777632 2333333 466778888899999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy3835 336 SKYSDLISDKQRLDRELLELRSGCCTQPESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLEL 415 (1659)
Q Consensus 336 ~e~~el~~e~~~Le~el~~lk~~~~~~e~~~~~~~~~~l~~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~ 415 (1659)
+|.++..++..++..+...+ +......+..+...+..++.++..+..++.+...++..++.++..
T Consensus 214 -~y~~l~~e~~~~~~~~~~~~--------------~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e 278 (1163)
T COG1196 214 -RYQELKAELRELELALLLAK--------------LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEE 278 (1163)
T ss_pred -HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999988887776 455555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 416 AQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHED 478 (1659)
Q Consensus 416 leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~el~~eiee 478 (1659)
+..++..++.....+...+..+..++..+..++..+..........+..+..++...+.++..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1163)
T COG1196 279 LREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEE 341 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554444444444444444444444444444444444444444444444444444433
No 21
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.54 E-value=9.8e-11 Score=166.23 Aligned_cols=189 Identities=17% Similarity=0.232 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 413 LELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMK 492 (1659)
Q Consensus 413 le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~ 492 (1659)
+..+++++..++.++..+..++..+..++..++.++..+..++..+..++..+..++..+..++..++.++..+...+..
T Consensus 800 l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 879 (1164)
T TIGR02169 800 LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD 879 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------------HHhHHHHHHH
Q psy3835 493 ATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKEL-------------VEDKKTLSYQ 559 (1659)
Q Consensus 493 ~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~le~el~~l-------------~~e~~~l~~e 559 (1659)
+..+++.+..++..+..++..+..++..+..++..+..++..+...+..+..++..+ ......+..+
T Consensus 880 l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 959 (1164)
T TIGR02169 880 LESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAE 959 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccCCHHHHHHH
Confidence 444444444444444444444444444444444444433333333333333332211 1134678889
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 560 IETLKREIASALHDRDKALKECNDLRERFGEFTAAKEECQRE 601 (1659)
Q Consensus 560 le~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~~~~e~q~e 601 (1659)
+..++.+|..++++|..++++|+.+.++|..+......+...
T Consensus 960 l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~ 1001 (1164)
T TIGR02169 960 LQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEE 1001 (1164)
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998876655555
No 22
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.53 E-value=3.6e-11 Score=171.04 Aligned_cols=238 Identities=14% Similarity=0.164 Sum_probs=102.5
Q ss_pred CHHHHHHHhhc---CCCeEEEE--EecCCCcCCCCCCCCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 245 SAREGMALLSD---SPDVLTIT--TLKPTSLGEHSPRVHRKSVNSSTQTMPLYVRQHNETVRRGDHTLKELEYYRGQHQA 319 (1659)
Q Consensus 245 s~~e~~~~l~~---~~~~~~i~--~~k~~~~~~~~~~~~~~~i~~~~~Ele~L~~q~~E~~~rl~~le~El~~l~~~l~e 319 (1659)
+.++|..++.. .|++++.. ++........+.......+.....+++.++.++.++...+..++.++..++..+..
T Consensus 630 ~l~~a~~~~~~~~~~g~~v~~~G~~~~~gg~~~~~~~~~~~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 709 (1179)
T TIGR02168 630 DLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEE 709 (1179)
T ss_pred CHHHHHHHHHHcCCCceEEecCCEEEcCCceEecCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666553 45655532 22111111112212333444555566666666666666666666666666655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 320 AMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRSGCCTQPESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRF 399 (1659)
Q Consensus 320 l~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk~~~~~~e~~~~~~~~~~l~~~~~~le~~le~l~~e~~~l~~~~ 399 (1659)
+..++..++.++..+...+..+..++..++.++..++. ++..+......+...+..+...+..+..++..+...+
T Consensus 710 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 784 (1179)
T TIGR02168 710 LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE-----RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555554444431 1111111222223333333333333333333333333
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 400 DDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDA 479 (1659)
Q Consensus 400 ~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~el~~eieel 479 (1659)
..+...+..+...+..+..++..++.++..+..++..+...+..++.++..+..++..+..++..+...+..+..++..+
T Consensus 785 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 864 (1179)
T TIGR02168 785 EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEL 864 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444444444444444444444444444444443333333333333333333
Q ss_pred HHHHHHHH
Q psy3835 480 VKEINTAM 487 (1659)
Q Consensus 480 e~el~~l~ 487 (1659)
++++..+.
T Consensus 865 ~~~~~~l~ 872 (1179)
T TIGR02168 865 EELIEELE 872 (1179)
T ss_pred HhhHHHHH
Confidence 33333333
No 23
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.53 E-value=1.2e-10 Score=165.21 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=16.4
Q ss_pred EEEeCCcccCCCCCHHHHHHHhhcCC
Q psy3835 232 VLSINNRTVDGLSSAREGMALLSDSP 257 (1659)
Q Consensus 232 i~~in~~~~~~~~s~~e~~~~l~~~~ 257 (1659)
...|||+.+ +..++..+|...|
T Consensus 109 ~~~~n~~~~----~~~~~~~~l~~~~ 130 (1164)
T TIGR02169 109 YYYLNGQRV----RLSEIHDFLAAAG 130 (1164)
T ss_pred eEEECCccc----cHHHHHHHHHHcC
Confidence 456899873 5888999888654
No 24
>KOG0161|consensus
Probab=99.51 E-value=3.8e-10 Score=154.50 Aligned_cols=32 Identities=9% Similarity=0.039 Sum_probs=13.7
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 286 TQTMPLYVRQHNETVRRGDHTLKELEYYRGQH 317 (1659)
Q Consensus 286 ~~Ele~L~~q~~E~~~rl~~le~El~~l~~~l 317 (1659)
...++.+..++.+++..++.++.++...+...
T Consensus 893 ee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~ 924 (1930)
T KOG0161|consen 893 EELLERLRAEKQELEKELKELKERLEEEEEKN 924 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444333333
No 25
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.50 E-value=2.6e-10 Score=162.33 Aligned_cols=191 Identities=18% Similarity=0.210 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchHHHHH
Q psy3835 297 NETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRSGCCTQPESDDAGSADSLNQ 376 (1659)
Q Consensus 297 ~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk~~~~~~e~~~~~~~~~~l~~ 376 (1659)
.....++..++.++.++.+.+.++..++..++.+++.++ +|.++..++..++..+..++ +..+..
T Consensus 168 ~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~-~~~~~~~~~~~l~~~l~~~~--------------~~~~~~ 232 (1179)
T TIGR02168 168 SKYKERRKETERKLERTRENLDRLEDILNELERQLKSLE-RQAEKAERYKELKAELRELE--------------LALLVL 232 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--------------HHHHHH
Confidence 344557777788888888888888888888888888886 67777788888877766654 333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 377 HYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWD 456 (1659)
Q Consensus 377 ~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~ 456 (1659)
.+..+...++.+..++..+..++..+...+...+.++..++.++..++.++..+...+..+..++..++.++..+...+.
T Consensus 233 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~ 312 (1179)
T TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44445555555555555555555554444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 457 IALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTE 502 (1659)
Q Consensus 457 ~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelke 502 (1659)
.+..++..+..++..+..++..+..++..+...+..+..++..++.
T Consensus 313 ~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 358 (1179)
T TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEA 358 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433333333333333333333333333333
No 26
>KOG0161|consensus
Probab=99.48 E-value=2.5e-09 Score=146.64 Aligned_cols=310 Identities=16% Similarity=0.201 Sum_probs=131.7
Q ss_pred CCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3835 277 VHRKSVNSSTQTMPLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELR 356 (1659)
Q Consensus 277 ~~~~~i~~~~~Ele~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk 356 (1659)
.--+.+.....++..|+.++.........++.....+......+..++..-+.........+..+..+...++.++..+.
T Consensus 835 ~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~ 914 (1930)
T KOG0161|consen 835 KTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELK 914 (1930)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555555544554444445555544444444555555555666666666665555
Q ss_pred hccCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 357 SGCCTQPESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNT 436 (1659)
Q Consensus 357 ~~~~~~e~~~~~~~~~~l~~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~ 436 (1659)
.+. .........+.....++++++..+++.++++...+.++..+......+++.+++++..+...++++.++...
T Consensus 915 ~~~-----e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~ 989 (1930)
T KOG0161|consen 915 ERL-----EEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKE 989 (1930)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 111112222333333333444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 437 ALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMS 516 (1659)
Q Consensus 437 l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~ 516 (1659)
+++.+.++...+...+.+...+.+....++..+.++...++.-++...++....-++..++..+++....+......+..
T Consensus 990 lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~ 1069 (1930)
T KOG0161|consen 990 LEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDN 1069 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444444444444444433333333333333333333333322222222222223333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy3835 517 ERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGEF 591 (1659)
Q Consensus 517 e~~~l~~el~~L~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~ 591 (1659)
.+.....++..++.++.+....+..+...+.++...+.++..+++.-+.....+...+.++..+++++++++++.
T Consensus 1070 ~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1070 QLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333444333444444444444444444444445555555555544444
No 27
>KOG0976|consensus
Probab=99.47 E-value=4e-09 Score=127.29 Aligned_cols=145 Identities=13% Similarity=0.129 Sum_probs=96.6
Q ss_pred eEEEEeCCCCcccccCCcCCCcEEEEeCCcccCCCC-CHHHHHHHh---------------hcCCCeEEEEEecCCCcCC
Q psy3835 209 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS-SAREGMALL---------------SDSPDVLTITTLKPTSLGE 272 (1659)
Q Consensus 209 ~~v~~i~~g~~a~~dg~l~~gd~i~~in~~~~~~~~-s~~e~~~~l---------------~~~~~~~~i~~~k~~~~~~ 272 (1659)
+|++..+..-+-.+-..+...-+++..|+.+-++.+ +.=+|..++ ..+|..++.-+-..+...-
T Consensus 5 ~yttpqs~ktp~rk~~~yssp~qvidlnNes~edlk~r~L~aeniiqdlrserdalhe~lvdkaglneSviie~sk~vst 84 (1265)
T KOG0976|consen 5 IYTTPQSKKTPKRKQAPYSSPFQVIDLNNESHEDLKKRLLDAENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVST 84 (1265)
T ss_pred cccchhhcccchhhccccCCCceeeeccccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhH
Confidence 344443333333344567777888887776533321 112222222 2245555544444444333
Q ss_pred CCCCCCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 273 HSPRVHRKSVNSSTQTMPLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDREL 352 (1659)
Q Consensus 273 ~~~~~~~~~i~~~~~Ele~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el 352 (1659)
.-+.+|....+.....+.+++.|+.+++++|..++.++..+++.++.+++.+.+.+-+++.+..++.++..++..-..++
T Consensus 85 qetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eI 164 (1265)
T KOG0976|consen 85 QETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDI 164 (1265)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHH
Confidence 35788999999999999999999999999999999999999999988888888888777777777666666655444444
Q ss_pred H
Q psy3835 353 L 353 (1659)
Q Consensus 353 ~ 353 (1659)
-
T Consensus 165 f 165 (1265)
T KOG0976|consen 165 F 165 (1265)
T ss_pred H
Confidence 3
No 28
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.44 E-value=7.8e-13 Score=146.05 Aligned_cols=164 Identities=11% Similarity=0.081 Sum_probs=125.8
Q ss_pred CcEEEECCCh---HHHHHHHhhhCCCcccccccceec-----------CChHHHHHhccCCceEEEEEeCCeeeeecHHH
Q psy3835 1475 RPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMH-----------CPQAAMEKGLADNLFVDYRKKGAYFECTSVAA 1540 (1659)
Q Consensus 1475 RpvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttr-----------vs~~~f~~~i~~~~flE~~~~~g~~YGts~~~ 1540 (1659)
..|+|+||+| +||.+.|....+..|......+|+ ++.++|.++++++.|.|+..++||||||+. +
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~-~ 81 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGI-E 81 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcH-H
Confidence 5789999998 999999977654346666666665 788899999999999877799999999999 5
Q ss_pred HHHHHHcCCCeEEEEcChhHHHHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHHc
Q psy3835 1541 VKDACDKNNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLKIECEH 1620 (1659)
Q Consensus 1541 V~~v~~~~gk~~iLdi~~~~~~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~~~e~~~ 1620 (1659)
++..++. |++||++........++.....+++||..++|.+.+.+|+. .|++.+.+++++++++... |
T Consensus 82 ~~~~l~~-g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~-------~R~~~~~~~i~~rl~r~~~----~ 149 (186)
T PRK10078 82 IDLWLHA-GFDVLVNGSRAHLPQARARYQSALLPVCLQVSPEILRQRLE-------NRGRENASEINARLARAAR----Y 149 (186)
T ss_pred HHHHHhC-CCEEEEeChHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHH-------HhCCCCHHHHHHHHHHhhh----h
Confidence 9999999 99999987777666777665556655555678899998886 2334566678888855422 2
Q ss_pred CCcceEEEeCC-CCHHHHHHHHHHHHHhhcCCc
Q psy3835 1621 KHYISAVIPAG-VNIAYMCTQIQTAVELEQSKT 1652 (1659)
Q Consensus 1621 ~~~fd~vi~n~-~~~~~~~~~l~~ii~~~~~~~ 1652 (1659)
. .+|++|+|+ .+++.++++|..++...|.+.
T Consensus 150 ~-~ad~~vi~~~~s~ee~~~~i~~~l~~~~~~~ 181 (186)
T PRK10078 150 Q-PQDCHTLNNDGSLRQSVDTLLTLLHLSQKEK 181 (186)
T ss_pred c-cCCEEEEeCCCCHHHHHHHHHHHHhhcCccc
Confidence 2 468555554 469999999999998776653
No 29
>KOG0250|consensus
Probab=99.41 E-value=3.8e-08 Score=125.97 Aligned_cols=65 Identities=20% Similarity=0.263 Sum_probs=49.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy3835 550 VEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAAKEECQREAFHARFEYAMRMG 614 (1659)
Q Consensus 550 ~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~~~~e~q~e~~~~~~~~~~~~~ 614 (1659)
...++.++.++..+++++..+..+..++...++.++.+...+..+....++.++..+.++-++..
T Consensus 660 d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 660 DDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34467777888888888888888888888888888888888888777777777777666665554
No 30
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.38 E-value=4.1e-12 Score=158.53 Aligned_cols=154 Identities=25% Similarity=0.305 Sum_probs=110.6
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEEecCCccc-cccCCCCCCCcccc
Q psy3835 1150 SGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYH-ELEGSGSSSAENES 1228 (1659)
Q Consensus 1150 ~~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~~-~~~~~~~~~~~~~~ 1228 (1659)
..|++|..|.++|||+++||++||+|++|||.++.++.+..........+..++|+|.|++.... .+.. ...+...
T Consensus 256 ~~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l--~~~~~~~- 332 (428)
T TIGR02037 256 QRGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISSFADLRRAIGTLKPGKKVTLGILRKGKEKTITVTL--GASPEEQ- 332 (428)
T ss_pred CCceEEEEccCCCChHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEE--CcCCCcc-
Confidence 46899999999999999999999999999999999876654443334568899999999876433 1111 0000000
Q ss_pred cCCCCCCCCeEEEEecCCcCccCeEEec------------CCCcceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcC
Q psy3835 1229 VSGRGSGEPRFLMIETRKCSNLGISLVG------------GNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAAT 1296 (1659)
Q Consensus 1229 ~~~~~~~~~~~v~l~k~~~~~lGi~l~g------------g~~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t 1296 (1659)
.. .....+|+.+.. ....|++|..|.++|+|+++||++||+|++|||+++.++.
T Consensus 333 -------~~-------~~~~~lGi~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s~~ 398 (428)
T TIGR02037 333 -------AS-------SSNPFLGLTVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSVA 398 (428)
T ss_pred -------cc-------ccccccceEEecCCHHHHHHcCCCcCcCceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCHH
Confidence 00 011124444431 1125899999999999999999999999999999999877
Q ss_pred HHHHHHHHcCCCCeEEEEEEeCcc
Q psy3835 1297 AEEAAYELAKPADKVTVLAQYSVE 1320 (1659)
Q Consensus 1297 ~~~~~~~l~~~~~~v~L~v~r~~~ 1320 (1659)
....+..-...++.+.|.|.|+..
T Consensus 399 d~~~~l~~~~~g~~v~l~v~R~g~ 422 (428)
T TIGR02037 399 ELRKVLDRAKKGGRVALLILRGGA 422 (428)
T ss_pred HHHHHHHhcCCCCEEEEEEEECCE
Confidence 665443322467899999999753
No 31
>PRK03918 chromosome segregation protein; Provisional
Probab=99.35 E-value=3e-08 Score=136.33 Aligned_cols=6 Identities=0% Similarity=-0.380 Sum_probs=2.7
Q ss_pred CCCCCc
Q psy3835 274 SPRVHR 279 (1659)
Q Consensus 274 ~~~~~~ 279 (1659)
|...|.
T Consensus 156 ~~~~~~ 161 (880)
T PRK03918 156 GLDDYE 161 (880)
T ss_pred CCHHHH
Confidence 444443
No 32
>KOG3605|consensus
Probab=99.33 E-value=3.2e-12 Score=151.68 Aligned_cols=142 Identities=18% Similarity=0.359 Sum_probs=120.3
Q ss_pred cccceEEecCcCCCCcC---cccccC-----CCCCCCCCCEEEEECCEeCCCCChHHHHHHHHhcC--CeEEEEEEeCCC
Q psy3835 738 NGTGTILHPRRHKERLP---LSALLN-----NPPSYKVNDCIVRVNNLDCSNVSKRMVLETVRSSG--TSALMVIRRRRV 807 (1659)
Q Consensus 738 ~glG~~i~gg~~~~~~~---V~~v~p-----~~g~l~~GD~Il~VNg~~~~~~~~~~~~~~l~~~~--~~v~l~v~R~~~ 807 (1659)
..||+.|+...+...++ |.+..+ ++|.|-+||+|+.|||+++.+++.+.+..+++... ..|+|+|.+-.
T Consensus 657 EiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV~cp- 735 (829)
T KOG3605|consen 657 EILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIVSCP- 735 (829)
T ss_pred ceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccceEEEEEecCC-
Confidence 68999999988888887 555554 99999999999999999999999999999999853 56888888752
Q ss_pred CCcceEEEEEec-cCCCCcCeEecCceEEEEeCCCChhhhcCCCCCCCEEEEeCCcccCCcccHHHHHHHHhcCCCeEEE
Q psy3835 808 GARSLVTTQLQL-NNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTI 886 (1659)
Q Consensus 808 ~~~~~~~~~i~~-~~~~~lG~~~~~gi~I~~v~~gs~A~~~g~L~~GD~Il~ing~~v~~~~~~~ea~~~l~~~~~~v~l 886 (1659)
++.++.|.. .-...|||++.+|| |+++..||.|+|- ++|+|+||+.|||++|.. ..|+..+.+|..+-+.+++
T Consensus 736 ---PV~~V~I~RPd~kyQLGFSVQNGi-ICSLlRGGIAERG-GVRVGHRIIEINgQSVVA-~pHekIV~lLs~aVGEIhM 809 (829)
T KOG3605|consen 736 ---PVTTVLIRRPDLRYQLGFSVQNGI-ICSLLRGGIAERG-GVRVGHRIIEINGQSVVA-TPHEKIVQLLSNAVGEIHM 809 (829)
T ss_pred ---CceEEEeecccchhhccceeeCcE-eehhhcccchhcc-CceeeeeEEEECCceEEe-ccHHHHHHHHHHhhhhhhh
Confidence 333455544 23467999999999 8899999999975 599999999999999999 9999999999988776666
No 33
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.29 E-value=7.1e-11 Score=129.84 Aligned_cols=159 Identities=10% Similarity=0.056 Sum_probs=124.0
Q ss_pred CcEEEECCCh---HHHHHHHhhhCCC--cccccccceec-----------CChHHHHHhccCCceEEEEEeCCeeeeecH
Q psy3835 1475 RPVILVGALS---DTVTDKLLQDFPD--KFVRCAPEIMH-----------CPQAAMEKGLADNLFVDYRKKGAYFECTSV 1538 (1659)
Q Consensus 1475 RpvVl~Gp~g---~~l~~~Ll~~~p~--~f~~~v~~Ttr-----------vs~~~f~~~i~~~~flE~~~~~g~~YGts~ 1538 (1659)
+.|||+||+| +||.+.|....+. .+.+.+++||| ++.++|..++.++.|.++.++++++||++.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA 81 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence 4688999998 9999988775542 24566788886 788999999999999999999999999998
Q ss_pred HHHHHHHHcCCCeEEEEcChhHHHHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHH
Q psy3835 1539 AAVKDACDKNNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLKIEC 1618 (1659)
Q Consensus 1539 ~~V~~v~~~~gk~~iLdi~~~~~~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~~~e~ 1618 (1659)
.+...+++ |+.||++.+..+...++......++||+.+ +.+.+.+|+. .|+..+.+.+++++.+...
T Consensus 82 -~i~~~~~~-g~~vv~~g~~~~~~~~~~~~~~~~~i~l~~-~~~~~~~Rl~-------~R~~~~~~~~~~rl~~~~~--- 148 (179)
T TIGR02322 82 -EIDQWLEA-GDVVVVNGSRAVLPEARQRYPNLLVVNITA-SPDVLAQRLA-------ARGRESREEIEERLARSAR--- 148 (179)
T ss_pred -HHHHHHhc-CCEEEEECCHHHHHHHHHHCCCcEEEEEEC-CHHHHHHHHH-------HcCCCCHHHHHHHHHHHhh---
Confidence 58888999 999999999888888776555668899985 6788888887 2334455667777754432
Q ss_pred HcC-CcceEE-EeCCCCHHHHHHHHHHHHHh
Q psy3835 1619 EHK-HYISAV-IPAGVNIAYMCTQIQTAVEL 1647 (1659)
Q Consensus 1619 ~~~-~~fd~v-i~n~~~~~~~~~~l~~ii~~ 1647 (1659)
|. ..+|++ |.|+.+++.++.+|.+++..
T Consensus 149 -~~~~~~~~~vi~~~~~~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 149 -FAAAPADVTTIDNSGSLEVAGETLLRLLRK 178 (179)
T ss_pred -cccccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence 22 346777 55655899999999998864
No 34
>KOG4643|consensus
Probab=99.29 E-value=4.1e-07 Score=114.03 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=54.5
Q ss_pred CCCCCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 274 SPRVHRKSVNSSTQTMPLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRE 351 (1659)
Q Consensus 274 ~~~~~~~~i~~~~~Ele~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~e 351 (1659)
|...|..+-.....+-..|...++.+..++..++.+++.-...+.+++.+|+.++.+++.++.+..+...+.......
T Consensus 157 ~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~y 234 (1195)
T KOG4643|consen 157 GKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRY 234 (1195)
T ss_pred CCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344455555555566667888888888888888888877777777777777777777777777766665555444443
No 35
>KOG0996|consensus
Probab=99.28 E-value=7.4e-08 Score=122.78 Aligned_cols=352 Identities=14% Similarity=0.187 Sum_probs=205.5
Q ss_pred CHHHHHHHhhcCC---CeEEEE--EecCCCc-CCC---------CCCCCccccchhhccchHHHHHHHHHHHHHHHHHHH
Q psy3835 245 SAREGMALLSDSP---DVLTIT--TLKPTSL-GEH---------SPRVHRKSVNSSTQTMPLYVRQHNETVRRGDHTLKE 309 (1659)
Q Consensus 245 s~~e~~~~l~~~~---~~~~i~--~~k~~~~-~~~---------~~~~~~~~i~~~~~Ele~L~~q~~E~~~rl~~le~E 309 (1659)
++++|..+-..-. .|+||- +.-++.. .-. |+.+. .+...-..++.+..++.....++..+..+
T Consensus 723 ~LeQAtRiaygk~rr~RVvTL~G~lIe~SGtmtGGG~~v~~g~mg~~~~--~t~~s~~~v~~le~~l~~~~~~~~~~~~~ 800 (1293)
T KOG0996|consen 723 NLEQATRIAYGKDRRWRVVTLDGSLIEKSGTMTGGGKKVKGGRMGTSIR--VTGVSKESVEKLERALSKMSDKARQHQEQ 800 (1293)
T ss_pred CHHHHHHHhhcCCCceEEEEecceeecccccccCCCCcCCCCCCCCccc--cCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888888742 344442 2212111 111 23333 44555567888888898888899999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchHHHHHHHHHHHHHHHHH-
Q psy3835 310 LEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRSGCCTQPESDDAGSADSLNQHYMSALNKYETI- 388 (1659)
Q Consensus 310 l~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk~~~~~~e~~~~~~~~~~l~~~~~~le~~le~l- 388 (1659)
+..++..+.++.....+++..++.+...+..+......++.++.+++..... ..........+++.++.+..+++.+
T Consensus 801 ~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k--~~~d~~~l~~~~~~ie~l~kE~e~~q 878 (1293)
T KOG0996|consen 801 LHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLK--KVVDKKRLKELEEQIEELKKEVEELQ 878 (1293)
T ss_pred HHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--ccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888877743111 1111122233444444455555444
Q ss_pred -----HHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 389 -----KDEYDALRKRFDDLIN-THSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRER 462 (1659)
Q Consensus 389 -----~~e~~~l~~~~~el~~-~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el 462 (1659)
+.+++.|+..+..+-. .++..+.+++++.+++..+...++.+.-.+......+...+..+..++...+..+.++
T Consensus 879 e~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~ 958 (1293)
T KOG0996|consen 879 EKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKEL 958 (1293)
T ss_pred HhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 2444444444444432 2233444555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 463 NEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTL 542 (1659)
Q Consensus 463 ~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~l 542 (1659)
+.+.+.+..+.....+++.++.+..+.+.++.+++..++.+++.....+..++.++-.+...++....++.+.+.++...
T Consensus 959 ~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~e~~~~~l~e~~~~~~~~ 1038 (1293)
T KOG0996|consen 959 DDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIENKLEAINGELNEIESKIKQP 1038 (1293)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhH
Confidence 55555555555555555555555555555555555555555555555555555533334444455555555555544444
Q ss_pred HHH----------------------hhhhHHhH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 543 EME----------------------NKELVEDK--KTLSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAAKEEC 598 (1659)
Q Consensus 543 e~e----------------------l~~l~~e~--~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~~~~e~ 598 (1659)
+.. -.++..+. ..+-+.+..|+..++.++.++...+.+|......|..........
T Consensus 1039 ~k~~~~l~~~~~tE~~~~~~~~~~~~Eeleae~~~~~i~e~i~~lE~~~~~l~~vd~~~i~eY~~k~~~y~~rv~~l~~~ 1118 (1293)
T KOG0996|consen 1039 EKELKKLSLCNMTETRPQIELDVESPEELEAEMLEDNINEKIALLEKRVEELREVDLGVIAEYAKKVELYLKRVAELEKF 1118 (1293)
T ss_pred HHhhCccccccchhhccccccccCChHHHHhhhcHhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 11111111 123445677888888888888889999988888777766654433
Q ss_pred HH
Q psy3835 599 QR 600 (1659)
Q Consensus 599 q~ 600 (1659)
.+
T Consensus 1119 t~ 1120 (1293)
T KOG0996|consen 1119 TQ 1120 (1293)
T ss_pred HH
Confidence 33
No 36
>KOG0964|consensus
Probab=99.28 E-value=2.9e-08 Score=123.55 Aligned_cols=328 Identities=18% Similarity=0.236 Sum_probs=197.9
Q ss_pred CHHHHHHHhhc-------------CCCeEEEEEecCCCcCC-----CCCCCCccccchhhccchHHHHHHHHHHHHHHHH
Q psy3835 245 SAREGMALLSD-------------SPDVLTITTLKPTSLGE-----HSPRVHRKSVNSSTQTMPLYVRQHNETVRRGDHT 306 (1659)
Q Consensus 245 s~~e~~~~l~~-------------~~~~~~i~~~k~~~~~~-----~~~~~~~~~i~~~~~Ele~L~~q~~E~~~rl~~l 306 (1659)
|-.|++.+|.+ +|.+..||.++...-.+ .|+..|-+ ++.+.+.-++++
T Consensus 117 tk~evvnLLESAGFSrsNPYyIV~QGkI~~La~akD~eRL~LLkeVaGtrvYee--------------rreeSlkim~ET 182 (1200)
T KOG0964|consen 117 TKGEVVNLLESAGFSRSNPYYIVPQGKINELANAKDSERLELLKEVAGTRVYEE--------------RREESLKIMEET 182 (1200)
T ss_pred cHHHHHHHHHhcCcccCCCceEeechhhHHhhcCCcHHHHHHHHHhcccchhHH--------------hHHHHHHHHHHH
Confidence 58899999998 56666666663332111 26665543 455555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchHHHHHHHHHHHHHHH
Q psy3835 307 LKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRSGCCTQPESDDAGSADSLNQHYMSALNKYE 386 (1659)
Q Consensus 307 e~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk~~~~~~e~~~~~~~~~~l~~~~~~le~~le 386 (1659)
+.....+...+..+.+.|..|+++-+.+. +|.++..+...|+.-+.... +.++...++.+.........+-.
T Consensus 183 ~qK~ekI~ell~yieerLreLEeEKeeL~-~Yqkldk~rr~lEYtiYdrE-------l~E~~~~l~~le~~r~~~~e~s~ 254 (1200)
T KOG0964|consen 183 KQKREKINELLKYIEERLRELEEEKEELE-KYQKLDKERRSLEYTIYDRE-------LNEINGELERLEEDRSSAPEESE 254 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHhHhhhhhhhhhhH-------HHHHHHHHHHHHHHHhccchhhh
Confidence 66666666666666777777777777776 77777777777666554332 23333444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 387 TIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQ 466 (1659)
Q Consensus 387 ~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~ 466 (1659)
++..+++....+++++..++..+...+..+.++.+.++.+..++-++...+.-++..+++++....++.......+..+.
T Consensus 255 ~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~ 334 (1200)
T KOG0964|consen 255 QYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVK 334 (1200)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHH
Confidence 44445555555555555555555555555555555555555555566666666677777777777777667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy3835 467 EALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYS---LI--MSERDS-VHKEMEKLSEDLTQAVRKIK 540 (1659)
Q Consensus 467 ~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~---~l--~~e~~~-l~~el~~L~~el~ele~ki~ 540 (1659)
.++.+.+.++.++.-.+..+..+-..+...|..++++...+..+.- +. ..+++. ++.++..+..-+........
T Consensus 335 ~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~ 414 (1200)
T KOG0964|consen 335 DKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQEN 414 (1200)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 7777766666666666666666655566666665554444322211 00 122222 34556666666666666666
Q ss_pred HHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3835 541 TLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAA 594 (1659)
Q Consensus 541 ~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~~ 594 (1659)
.++.++.+++.++++.-.++..|...|.+.+....++-.++..+++++++++..
T Consensus 415 ~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~ 468 (1200)
T KOG0964|consen 415 ILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDK 468 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666777777777777776654
No 37
>PRK10942 serine endoprotease; Provisional
Probab=99.27 E-value=8.1e-11 Score=147.02 Aligned_cols=151 Identities=21% Similarity=0.260 Sum_probs=107.8
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEEecCCccc-cccCCCCCCCcccc
Q psy3835 1150 SGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYH-ELEGSGSSSAENES 1228 (1659)
Q Consensus 1150 ~~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~~-~~~~~~~~~~~~~~ 1228 (1659)
..|++|..|.++|||+++||++||+|++|||..+.++............+..+.|.|.|++.... .+.. .....
T Consensus 310 ~~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~l--~~~~~--- 384 (473)
T PRK10942 310 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKPVNVNVEL--QQSSQ--- 384 (473)
T ss_pred CCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCeEEEEEEEe--CcCcc---
Confidence 46999999999999999999999999999999999886654433333457899999999886432 1111 00000
Q ss_pred cCCCCCCCCeEEEEecCCcCccCeEEe---c-CCCcceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHH
Q psy3835 1229 VSGRGSGEPRFLMIETRKCSNLGISLV---G-GNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYEL 1304 (1659)
Q Consensus 1229 ~~~~~~~~~~~v~l~k~~~~~lGi~l~---g-g~~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l 1304 (1659)
.. . ......+|+... . ....|++|..|.++|+|+++||++||+|++|||+++.++.....+ +
T Consensus 385 --------~~---~-~~~~~~lGl~g~~l~~~~~~~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s~~dl~~~--l 450 (473)
T PRK10942 385 --------NQ---V-DSSNIFNGIEGAELSNKGGDKGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKNIAELRKI--L 450 (473)
T ss_pred --------cc---c-ccccccccceeeecccccCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHH--H
Confidence 00 0 000112343322 1 112489999999999999999999999999999999987665543 4
Q ss_pred cCCCCeEEEEEEeCc
Q psy3835 1305 AKPADKVTVLAQYSV 1319 (1659)
Q Consensus 1305 ~~~~~~v~L~v~r~~ 1319 (1659)
...+..+.|+|.|+.
T Consensus 451 ~~~~~~v~l~V~R~g 465 (473)
T PRK10942 451 DSKPSVLALNIQRGD 465 (473)
T ss_pred HhCCCeEEEEEEECC
Confidence 445578999999874
No 38
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=99.26 E-value=3.3e-07 Score=112.06 Aligned_cols=50 Identities=14% Similarity=0.144 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 300 VRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLD 349 (1659)
Q Consensus 300 ~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le 349 (1659)
+++++..+++...+......+..+...++.++..++.++...+.+...|.
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~ 191 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLK 191 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444333333333333
No 39
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.26 E-value=2.7e-07 Score=130.26 Aligned_cols=42 Identities=12% Similarity=0.087 Sum_probs=23.9
Q ss_pred hHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3835 624 NEVEAASMDLFGKCQKERMDNLEANQEIDRLRKHTDKLQAEL 665 (1659)
Q Consensus 624 ~~~~~~~~~l~~~~~~~~~~~~~~~~Ele~lr~~l~~l~~el 665 (1659)
..+.....++..++..+.+....+..++..+..++..++.+|
T Consensus 1050 ~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1050 LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555666666666666666666
No 40
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.26 E-value=4.6e-11 Score=149.35 Aligned_cols=152 Identities=22% Similarity=0.182 Sum_probs=109.8
Q ss_pred EEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEEecCCcccc-ccCCCCCCCcccccCC
Q psy3835 1153 VFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHE-LEGSGSSSAENESVSG 1231 (1659)
Q Consensus 1153 v~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~~~-~~~~~~~~~~~~~~~~ 1231 (1659)
.+|..|.++|||+++||++||.|++|||.++.++............++.+.++|.|++..... ......+...
T Consensus 128 ~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l~~~~~~~------ 201 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQIAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKTLDLRHWAF------ 201 (449)
T ss_pred ccccccCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEEeccccccc------
Confidence 478999999999999999999999999999999987766655566678899999998864321 1000000000
Q ss_pred CCCCCCeEEEEecCCcCccCeEEecCCCcceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCeE
Q psy3835 1232 RGSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKV 1311 (1659)
Q Consensus 1232 ~~~~~~~~v~l~k~~~~~lGi~l~gg~~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v 1311 (1659)
. . . .......+|+.... ...+++|..|.++|||+++||++||+|++|||+++.++........ ...++.+
T Consensus 202 -~-~-~-----~~~~~~~lGl~~~~-~~~~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s~~dl~~~l~-~~~~~~v 271 (449)
T PRK10779 202 -E-P-D-----KQDPVSSLGIRPRG-PQIEPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQWQTFVTLVR-DNPGKPL 271 (449)
T ss_pred -C-c-c-----ccchhhcccccccC-CCcCcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHH-hCCCCEE
Confidence 0 0 0 00111246665432 2346899999999999999999999999999999988776654432 2466789
Q ss_pred EEEEEeCcc
Q psy3835 1312 TVLAQYSVE 1320 (1659)
Q Consensus 1312 ~L~v~r~~~ 1320 (1659)
.+++.|+..
T Consensus 272 ~l~v~R~g~ 280 (449)
T PRK10779 272 ALEIERQGS 280 (449)
T ss_pred EEEEEECCE
Confidence 999998753
No 41
>PRK03918 chromosome segregation protein; Provisional
Probab=99.25 E-value=2.9e-07 Score=126.72 Aligned_cols=6 Identities=17% Similarity=-0.247 Sum_probs=2.5
Q ss_pred CeeecC
Q psy3835 78 GLELVG 83 (1659)
Q Consensus 78 g~~~~~ 83 (1659)
.|.+-|
T Consensus 44 ~~~l~~ 49 (880)
T PRK03918 44 LVGLYW 49 (880)
T ss_pred HHHhcC
Confidence 344444
No 42
>PRK10139 serine endoprotease; Provisional
Probab=99.24 E-value=8.9e-11 Score=145.98 Aligned_cols=156 Identities=21% Similarity=0.252 Sum_probs=107.3
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEEecCCccccccCCCCCCCccccc
Q psy3835 1150 SGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESV 1229 (1659)
Q Consensus 1150 ~~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~~~~~~~~~~~~~~~~~ 1229 (1659)
..|++|..|.++|||+++||++||.|++|||.++.++............+..+.|.|.|++.... +.......... ..
T Consensus 289 ~~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~V~R~G~~~~-l~v~~~~~~~~-~~ 366 (455)
T PRK10139 289 QRGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLE-VEVTLDTSTSS-SA 366 (455)
T ss_pred CCceEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEE-EEEEECCCCCc-cc
Confidence 46899999999999999999999999999999999876554333333567899999999886432 11100000000 00
Q ss_pred CCCCCCCCeEEEEecCCcCccCeEEecC----CCcceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHc
Q psy3835 1230 SGRGSGEPRFLMIETRKCSNLGISLVGG----NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA 1305 (1659)
Q Consensus 1230 ~~~~~~~~~~v~l~k~~~~~lGi~l~gg----~~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~ 1305 (1659)
.. ..+. + ...|+.+... ...|++|..|.++|||+++||++||+|++|||+++.++.....+. .
T Consensus 367 -~~-------~~~~--~-~~~g~~l~~~~~~~~~~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~l--~ 433 (455)
T PRK10139 367 -SA-------EMIT--P-ALQGATLSDGQLKDGTKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVL--A 433 (455)
T ss_pred -cc-------cccc--c-cccccEecccccccCCCceEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHHH--H
Confidence 00 0000 0 0112222211 124899999999999999999999999999999999887765443 3
Q ss_pred CCCCeEEEEEEeCcc
Q psy3835 1306 KPADKVTVLAQYSVE 1320 (1659)
Q Consensus 1306 ~~~~~v~L~v~r~~~ 1320 (1659)
+..+.+.|.|.|+..
T Consensus 434 ~~~~~v~l~v~R~g~ 448 (455)
T PRK10139 434 AKPAIIALQIVRGNE 448 (455)
T ss_pred hCCCeEEEEEEECCE
Confidence 445789999998754
No 43
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.23 E-value=3.6e-07 Score=117.84 Aligned_cols=254 Identities=15% Similarity=0.162 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 412 KLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRM 491 (1659)
Q Consensus 412 ~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~el~~eieele~el~~l~~~l~ 491 (1659)
.++........++.+++.+..++.....++..+..++..+.....+....++.+...+...+.....|+.+++.+..++.
T Consensus 274 ~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle 353 (775)
T PF10174_consen 274 QLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLE 353 (775)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33333333444444444444444444444445555555444444444444444444444444444444555555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHH---------H
Q psy3835 492 KATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIE---------T 562 (1659)
Q Consensus 492 ~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~le~el~~l~~e~~~l~~ele---------~ 562 (1659)
.....+.+....+..+.++...+..++..+...+.....++..+..+++.++..+.+-...+..+...+. .
T Consensus 354 ~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~ 433 (775)
T PF10174_consen 354 EKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDE 433 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHH
Confidence 4444444444444444444444444444444444444444444444444444444333222222222222 2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhhHHHHHhhhhHhhhhhhh
Q psy3835 563 LKREIASALHDRDKALKECNDLRERFGE-FTAAKEECQREAFHARFEYAMRMGERDSSRKERNEVEAASMDLFGKCQKER 641 (1659)
Q Consensus 563 Lk~ei~~l~~~~~~aieE~e~l~er~~e-~~~~~~e~q~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 641 (1659)
+...++....+....++.+..++.+.+. ........+++....+.....+.....+..-.+..+++....+.....+..
T Consensus 434 ~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~ 513 (775)
T PF10174_consen 434 ALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKD 513 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhh
Confidence 2233444444444444444444433331 122233333334444444444444344444444444445555555555555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q psy3835 642 MDNLEANQEIDRLRKHTDKLQAEL 665 (1659)
Q Consensus 642 ~~~~~~~~Ele~lr~~l~~l~~el 665 (1659)
+.+..+..+++..+.++..+..++
T Consensus 514 s~i~~l~I~lEk~rek~~kl~~ql 537 (775)
T PF10174_consen 514 SEIERLEIELEKKREKHEKLEKQL 537 (775)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHH
Confidence 556666666666666666666666
No 44
>KOG3605|consensus
Probab=99.23 E-value=1.9e-11 Score=145.15 Aligned_cols=160 Identities=21% Similarity=0.351 Sum_probs=131.2
Q ss_pred CeEEEEEecC-CCCceEEEEecC----CCcEEEEEeCCCChhhhcC-CCCCCEEEeeCCeecCCCCHHHHHHHHHhCC--
Q psy3835 1128 ELRRVHIDKS-VEPLGIQIQCLD----SGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCG-- 1199 (1659)
Q Consensus 1128 ~~~~v~l~k~-~~~lG~sl~~~~----~~gv~I~~V~~gs~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~-- 1199 (1659)
.-+.|.+.|. ++.||+.|+-.+ -.-|+|.....+|||+++| |-.||+|++|||.++.++........++...
T Consensus 645 ~qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQ 724 (829)
T KOG3605|consen 645 NQKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQ 724 (829)
T ss_pred ccceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhccccc
Confidence 3467888886 789999887652 1357888999999999999 9999999999999999999998888888764
Q ss_pred CeEEEEEEecCCccccccCCCCCCCcccccCCCCCCCCeEEEEec-CCcCccCeEEecCCCcceEEEEeCCCChhhhcCC
Q psy3835 1200 NSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGEPRFLMIET-RKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGL 1278 (1659)
Q Consensus 1200 ~~v~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~k-~~~~~lGi~l~gg~~~gi~V~~V~~gs~A~~~gL 1278 (1659)
..|+|.|.+.+... .|.|.+ .....|||++..| +|-+...||.|+++|+
T Consensus 725 T~VkltiV~cpPV~-------------------------~V~I~RPd~kyQLGFSVQNG-----iICSLlRGGIAERGGV 774 (829)
T KOG3605|consen 725 TAVKLNIVSCPPVT-------------------------TVLIRRPDLRYQLGFSVQNG-----IICSLLRGGIAERGGV 774 (829)
T ss_pred ceEEEEEecCCCce-------------------------EEEeecccchhhccceeeCc-----EeehhhcccchhccCc
Confidence 47899998766521 133333 2234789999865 6888899999999999
Q ss_pred CCCCEEEEECCeeCCCcCHHHHHHHHcCCCCeEEEEEEe
Q psy3835 1279 RTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQY 1317 (1659)
Q Consensus 1279 ~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~r 1317 (1659)
|+|.+|++|||++|-...|+..+.+|..+-+.|.++.-+
T Consensus 775 RVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIhMKTMP 813 (829)
T KOG3605|consen 775 RVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIHMKTMP 813 (829)
T ss_pred eeeeeEEEECCceEEeccHHHHHHHHHHhhhhhhhhcch
Confidence 999999999999999999999999998888888776654
No 45
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.23 E-value=2e-06 Score=109.22 Aligned_cols=134 Identities=13% Similarity=0.174 Sum_probs=59.5
Q ss_pred ccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy3835 281 SVNSSTQTMPLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRSGCC 360 (1659)
Q Consensus 281 ~i~~~~~Ele~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk~~~~ 360 (1659)
.......+|..+++++..+..++...+.+...+-..+.....-+++|..+++.....-...............++.....
T Consensus 28 ~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~ 107 (522)
T PF05701_consen 28 RVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIA 107 (522)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhc
Confidence 33444455566666666666666666655555554544444444444444444433322222222222223333322111
Q ss_pred CCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy3835 361 TQPESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLE 414 (1659)
Q Consensus 361 ~~e~~~~~~~~~~l~~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le 414 (1659)
..........++..+..+......+...+.++..++.++............+.+
T Consensus 108 ~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~ae 161 (522)
T PF05701_consen 108 EEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAE 161 (522)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100011122233344555555555555555555555555554443333333333
No 46
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.22 E-value=1.7e-07 Score=132.31 Aligned_cols=44 Identities=11% Similarity=0.036 Sum_probs=22.5
Q ss_pred hhhHhhhhHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy3835 617 DSSRKERNEVEAASMDLFGKCQKERMDNLEANQEIDRLRKHTDK 660 (1659)
Q Consensus 617 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Ele~lr~~l~~ 660 (1659)
..+..+...+......+......+......+..++..++.++..
T Consensus 1050 ~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e 1093 (1311)
T TIGR00606 1050 LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44444455555555555555544444445555555555555533
No 47
>KOG0250|consensus
Probab=99.21 E-value=8.9e-07 Score=113.76 Aligned_cols=120 Identities=14% Similarity=0.175 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Q psy3835 482 EINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEM----------------- 544 (1659)
Q Consensus 482 el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~le~----------------- 544 (1659)
+++.++.....+++++..++.++.+.+..++.++..+.++...+..++..+..+..++..+++
T Consensus 662 ~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ 741 (1074)
T KOG0250|consen 662 EIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAR 741 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444444443
Q ss_pred HhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 545 ENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAAKEECQRE 601 (1659)
Q Consensus 545 el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~~~~e~q~e 601 (1659)
++.....+++.....++.++.++..+......+.+.|...++++.........+..+
T Consensus 742 ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~e 798 (1074)
T KOG0250|consen 742 EIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEE 798 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 122223333444444555555555555555566666666666555555554444444
No 48
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.21 E-value=9.9e-07 Score=113.90 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=35.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3835 287 QTMPLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELR 356 (1659)
Q Consensus 287 ~Ele~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk 356 (1659)
.+++..+....-+.++++.+.-+|..-...+..+..++..+.++...++..|.-++.++...+...+.++
T Consensus 273 k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lq 342 (775)
T PF10174_consen 273 KQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQ 342 (775)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555555555555555555555555545555555555444444444443
No 49
>KOG0964|consensus
Probab=99.18 E-value=1.6e-06 Score=108.47 Aligned_cols=158 Identities=15% Similarity=0.190 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q psy3835 376 QHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQC------EDMNQEKNTALRERNGLKQQCT 449 (1659)
Q Consensus 376 ~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~------~~l~~~~~~l~~ei~~L~~el~ 449 (1659)
..+..+..++.+.++++..+.-+++.+..+-.....++..++.+...+-.+. ..-..+..=+..++..+..-+.
T Consensus 328 ~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~ 407 (1200)
T KOG0964|consen 328 HVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGIN 407 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555566666666666666655555555555555444433221 1112333334444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 450 AAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLS 529 (1659)
Q Consensus 450 ~l~~~~~~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~ 529 (1659)
....+...++.++..++..++...+++.++...+.+...++..+.+++..++.+++++......+=.+-..++..+..+.
T Consensus 408 ~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~ 487 (1200)
T KOG0964|consen 408 DTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLE 487 (1200)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444445555555555555544444444444444444444444444444444444443333333333333333333333
Q ss_pred HHHH
Q psy3835 530 EDLT 533 (1659)
Q Consensus 530 ~el~ 533 (1659)
+++.
T Consensus 488 ~dl~ 491 (1200)
T KOG0964|consen 488 EDLS 491 (1200)
T ss_pred HHHH
Confidence 3333
No 50
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.18 E-value=1.5e-10 Score=109.24 Aligned_cols=77 Identities=35% Similarity=0.575 Sum_probs=71.0
Q ss_pred EEEEec-CCCCceEEEEecCC---CcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEE
Q psy3835 1131 RVHIDK-SVEPLGIQIQCLDS---GGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLV 1206 (1659)
Q Consensus 1131 ~v~l~k-~~~~lG~sl~~~~~---~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v 1206 (1659)
.|.+.| ...+|||++.++.. .++||..|.|+|||+++||++||+|++|||.++.++++.+++.+++.++..|+|+|
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V 80 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTV 80 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEE
T ss_pred CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEE
Confidence 367888 57899999999865 49999999999999999999999999999999999999999999999988999987
Q ss_pred E
Q psy3835 1207 Q 1207 (1659)
Q Consensus 1207 ~ 1207 (1659)
+
T Consensus 81 ~ 81 (81)
T PF00595_consen 81 Q 81 (81)
T ss_dssp E
T ss_pred C
Confidence 4
No 51
>KOG0976|consensus
Probab=99.17 E-value=1.5e-06 Score=105.74 Aligned_cols=111 Identities=15% Similarity=0.160 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---H
Q psy3835 474 QQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKEL---V 550 (1659)
Q Consensus 474 ~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~le~el~~l---~ 550 (1659)
.++..++..+-+.+-+...+.+.+++|+++++.+......+++.+.....+++.|.....+.+.++..+.+.+-.+ +
T Consensus 330 rqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~ 409 (1265)
T KOG0976|consen 330 RQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGK 409 (1265)
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 3333444444444444444444555555555555555555555555555555555444444444444444442222 2
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy3835 551 EDKKTLSYQIETLKREIASALHDRDKALKECNDL 584 (1659)
Q Consensus 551 ~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l 584 (1659)
.+.+..++++......+..++.....+..+++..
T Consensus 410 ~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~f 443 (1265)
T KOG0976|consen 410 KDHEAAKNELQEALEKLDLMGTHLSMADYQLSNF 443 (1265)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhH
Confidence 2334444444444444445555444444444333
No 52
>PRK01156 chromosome segregation protein; Provisional
Probab=99.17 E-value=1.9e-06 Score=118.29 Aligned_cols=10 Identities=0% Similarity=0.135 Sum_probs=5.0
Q ss_pred EEEEeCCccc
Q psy3835 231 RVLSINNRTV 240 (1659)
Q Consensus 231 ~i~~in~~~~ 240 (1659)
..+.+||..+
T Consensus 97 ~~~~~~g~~~ 106 (895)
T PRK01156 97 AYIKKDGSII 106 (895)
T ss_pred EEEecCCeec
Confidence 3444566543
No 53
>PRK01156 chromosome segregation protein; Provisional
Probab=99.16 E-value=2.4e-06 Score=117.47 Aligned_cols=6 Identities=0% Similarity=-0.031 Sum_probs=2.8
Q ss_pred eeeccc
Q psy3835 118 ARIKKQ 123 (1659)
Q Consensus 118 ~~vn~~ 123 (1659)
+.+||.
T Consensus 99 ~~~~g~ 104 (895)
T PRK01156 99 IKKDGS 104 (895)
T ss_pred EecCCe
Confidence 344554
No 54
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.15 E-value=2.4e-06 Score=108.53 Aligned_cols=35 Identities=9% Similarity=0.157 Sum_probs=15.7
Q ss_pred hhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3835 631 MDLFGKCQKERMDNLEANQEIDRLRKHTDKLQAEL 665 (1659)
Q Consensus 631 ~~l~~~~~~~~~~~~~~~~Ele~lr~~l~~l~~el 665 (1659)
..+..+......+...+..+++..+..+...+.+|
T Consensus 382 e~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL 416 (522)
T PF05701_consen 382 EEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERL 416 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444555555555555544444
No 55
>KOG4643|consensus
Probab=99.15 E-value=2.6e-06 Score=107.13 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=25.9
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 285 STQTMPLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQE 330 (1659)
Q Consensus 285 ~~~Ele~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e 330 (1659)
+...|..|..++.|+...+..++.+|+.++..+..++.+..+...+
T Consensus 182 le~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~e 227 (1195)
T KOG4643|consen 182 LEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDE 227 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666665555555544444333
No 56
>KOG3550|consensus
Probab=99.14 E-value=7.4e-11 Score=115.66 Aligned_cols=88 Identities=26% Similarity=0.457 Sum_probs=81.6
Q ss_pred CCeEEEEEecCCCCceEEEEec--CCCcEEEEEeCCCChhhhcC-CCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEE
Q psy3835 1127 GELRRVHIDKSVEPLGIQIQCL--DSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSIT 1203 (1659)
Q Consensus 1127 ~~~~~v~l~k~~~~lG~sl~~~--~~~gv~I~~V~~gs~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~ 1203 (1659)
..|+.|.+.|...||||.+.|| .+.+|||+.|.|||.|++.| |+-||++++|||.+|.+-.|+.|+.+|+.+-..|.
T Consensus 89 ahprvvelpktdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvk 168 (207)
T KOG3550|consen 89 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVK 168 (207)
T ss_pred CCCceeecCccccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEE
Confidence 3578999999999999999999 46799999999999999988 99999999999999999999999999999999999
Q ss_pred EEEEecCCccc
Q psy3835 1204 MLVQYSPDKYH 1214 (1659)
Q Consensus 1204 l~v~r~~~~~~ 1214 (1659)
|.|.+.|....
T Consensus 169 lvvrytpkvle 179 (207)
T KOG3550|consen 169 LVVRYTPKVLE 179 (207)
T ss_pred EEEecChHHHH
Confidence 99999887544
No 57
>KOG0933|consensus
Probab=99.14 E-value=8.5e-07 Score=111.55 Aligned_cols=110 Identities=20% Similarity=0.183 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 457 IALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAV 536 (1659)
Q Consensus 457 ~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele 536 (1659)
.++.++...+.++..+...+..++.++..+...+...+.+..++.+++......+..+..++..+....+....+....+
T Consensus 826 ~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~ 905 (1174)
T KOG0933|consen 826 ELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGE 905 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhccc
Confidence 33333333333333333333333333333333333333444444444444333333333333333333333333333333
Q ss_pred HHHHHHHHHhhhhHHhHHHHHHHHHHHHHH
Q psy3835 537 RKIKTLEMENKELVEDKKTLSYQIETLKRE 566 (1659)
Q Consensus 537 ~ki~~le~el~~l~~e~~~l~~ele~Lk~e 566 (1659)
.+++.++.++..+..+......+++.+..+
T Consensus 906 l~~kkle~e~~~~~~e~~~~~k~v~~l~~k 935 (1174)
T KOG0933|consen 906 LERKKLEHEVTKLESEKANARKEVEKLLKK 935 (1174)
T ss_pred chHHHHHhHHHHhhhhHHHHHHHHHHHHHh
Confidence 333334443333333333444444444433
No 58
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.13 E-value=1.8e-10 Score=108.77 Aligned_cols=77 Identities=38% Similarity=0.591 Sum_probs=70.6
Q ss_pred EEEecCCcCccCeEEecCCC---cceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCeEEEEEE
Q psy3835 1240 LMIETRKCSNLGISLVGGNA---VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQ 1316 (1659)
Q Consensus 1240 v~l~k~~~~~lGi~l~gg~~---~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~ 1316 (1659)
+.+.+....+|||++.++.. .++||..|.++|||+++||++||+|++|||+++.++++.+++.+++.+++.++|+|+
T Consensus 2 v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V~ 81 (81)
T PF00595_consen 2 VTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTVQ 81 (81)
T ss_dssp EEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEEE
T ss_pred EEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEEC
Confidence 56777777899999998766 499999999999999988999999999999999999999999999999889999885
No 59
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.11 E-value=1.3e-06 Score=120.88 Aligned_cols=54 Identities=9% Similarity=-0.051 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 290 PLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISD 344 (1659)
Q Consensus 290 e~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e 344 (1659)
-.++.++.++.+++...+..+..+.+.+.++..++..|+.+++.++ ++..+..+
T Consensus 289 ag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~-kyleL~ee 342 (1486)
T PRK04863 289 LELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAAS-DHLNLVQT 342 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4577888888888888888888888888888888888888888887 45555444
No 60
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.09 E-value=5.8e-06 Score=115.61 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 553 KKTLSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAAKEECQREAFHARFEYA 610 (1659)
Q Consensus 553 ~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~~~~e~q~e~~~~~~~~~ 610 (1659)
.+.++.+++.+...+..+.....++.+.+.....+++.+.......+.+....+..+.
T Consensus 602 ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1201)
T PF12128_consen 602 EEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQ 659 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4466666666777666666666666666666666666666555555554444443333
No 61
>KOG4674|consensus
Probab=99.08 E-value=4.5e-06 Score=113.35 Aligned_cols=43 Identities=14% Similarity=0.218 Sum_probs=23.4
Q ss_pred hhHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3835 623 RNEVEAASMDLFGKCQKERMDNLEANQEIDRLRKHTDKLQAEL 665 (1659)
Q Consensus 623 ~~~~~~~~~~l~~~~~~~~~~~~~~~~Ele~lr~~l~~l~~el 665 (1659)
...+......+..+++.+-.....++.+++.++.++..+..++
T Consensus 435 ~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~ren 477 (1822)
T KOG4674|consen 435 LERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDLEREN 477 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334555555555555555566666666666555555554
No 62
>KOG3550|consensus
Probab=99.08 E-value=2.4e-10 Score=112.13 Aligned_cols=86 Identities=24% Similarity=0.507 Sum_probs=78.6
Q ss_pred CCCCeEEEEecCCcCccCeEEecCCC--cceEEEEeCCCChhhh-cCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCe
Q psy3835 1234 SGEPRFLMIETRKCSNLGISLVGGNA--VGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADK 1310 (1659)
Q Consensus 1234 ~~~~~~v~l~k~~~~~lGi~l~gg~~--~gi~V~~V~~gs~A~~-~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~ 1310 (1659)
...||+|.|.|... +|||.+.||.. .+|||++|.|||.|++ +||+.||++++|||++|.+--|+.++.+|+.+.+.
T Consensus 88 hahprvvelpktde-glgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gs 166 (207)
T KOG3550|consen 88 HAHPRVVELPKTDE-GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGS 166 (207)
T ss_pred CCCCceeecCcccc-ccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCc
Confidence 35689999988664 99999999864 5899999999999999 99999999999999999999999999999999999
Q ss_pred EEEEEEeCcc
Q psy3835 1311 VTVLAQYSVE 1320 (1659)
Q Consensus 1311 v~L~v~r~~~ 1320 (1659)
|.|+|.+-+.
T Consensus 167 vklvvrytpk 176 (207)
T KOG3550|consen 167 VKLVVRYTPK 176 (207)
T ss_pred EEEEEecChH
Confidence 9999998764
No 63
>KOG0933|consensus
Probab=99.08 E-value=2.8e-06 Score=107.09 Aligned_cols=35 Identities=9% Similarity=0.163 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3835 389 KDEYDALRKRFDDLINTHSTAVDKLELAQEEVARI 423 (1659)
Q Consensus 389 ~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~l 423 (1659)
.+++.+.+.++.+....++....++..++..+++.
T Consensus 747 ~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~ 781 (1174)
T KOG0933|consen 747 LEEVEESEQQIKEKERALKKCEDKISTLEKKMKDA 781 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 33333334444444444444444444444444333
No 64
>KOG0971|consensus
Probab=99.07 E-value=4.5e-06 Score=103.40 Aligned_cols=43 Identities=9% Similarity=0.170 Sum_probs=23.6
Q ss_pred ccCCCcceeEEEEEeccCCCCCCccCeeecCCCCCCCC--CCCccEEEEeec
Q psy3835 53 DTDLQEWDTEVLDMNLTNLSPNEALGLELVGGRDDPFY--PNDSSIYVSNIV 102 (1659)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~p~~--~~d~~i~v~~v~ 102 (1659)
-|.+.++.|--|.++-. .+.|.| +| - .--|| +.+|||||-.-.
T Consensus 28 ~T~FA~G~WvGVvLDep-~GKNnG---sV-q--g~qYF~Cd~ncG~FVr~sq 72 (1243)
T KOG0971|consen 28 QTQFAEGKWVGVVLDEP-KGKNNG---SV-Q--GVQYFECDENCGVFVRSSQ 72 (1243)
T ss_pred ccccccCceEEEEeccc-cCCCCC---cc-c--ceeeEecCCCcceEeehhh
Confidence 36667777777766642 112211 11 1 12355 889999986544
No 65
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.06 E-value=1e-09 Score=135.84 Aligned_cols=135 Identities=19% Similarity=0.243 Sum_probs=100.8
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEEecCCccccccCCCCCCCcccccC
Q psy3835 1151 GGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVS 1230 (1659)
Q Consensus 1151 ~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~~~~~~~~~~~~~~~~~~ 1230 (1659)
.|.+|..|.++|||+++||++||.|++|||.++.++.+......... ..+.+.+.|++.... +
T Consensus 128 ~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~~~dl~~~ia~~~--~~v~~~I~r~g~~~~-l-------------- 190 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAGIEPGDEILSVNGNKIPGFKDVRQQIADIA--GEPMVEILAERENWT-F-------------- 190 (420)
T ss_pred CCceeeccCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhhc--ccceEEEEEecCceE-e--------------
Confidence 57899999999999999999999999999999998866643333322 677888888765211 0
Q ss_pred CCCCCCCeEEEEecCCcCccCeEEecCCCcceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCe
Q psy3835 1231 GRGSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADK 1310 (1659)
Q Consensus 1231 ~~~~~~~~~v~l~k~~~~~lGi~l~gg~~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~ 1310 (1659)
.+ .+|+... ....|++|..|.++|||+++||++||+|++|||+++.++........ ...++.
T Consensus 191 ----------~v------~l~~~~~-~~~~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s~~dl~~~l~-~~~~~~ 252 (420)
T TIGR00054 191 ----------EV------MKELIPR-GPKIEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRSWTDFVSAVK-ENPGKS 252 (420)
T ss_pred ----------cc------cccceec-CCCcCcEEEEECCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHH-hCCCCc
Confidence 00 1222211 12247899999999999999999999999999999988765543332 245678
Q ss_pred EEEEEEeCcc
Q psy3835 1311 VTVLAQYSVE 1320 (1659)
Q Consensus 1311 v~L~v~r~~~ 1320 (1659)
+.+++.|+..
T Consensus 253 v~l~v~R~g~ 262 (420)
T TIGR00054 253 MDIKVERNGE 262 (420)
T ss_pred eEEEEEECCE
Confidence 9999998753
No 66
>KOG0612|consensus
Probab=99.04 E-value=6.1e-06 Score=106.40 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=7.3
Q ss_pred ccEEEEeeccCC
Q psy3835 94 SSIYVSNIVKGS 105 (1659)
Q Consensus 94 ~~i~v~~v~~g~ 105 (1659)
.|-+.|+|.-|.
T Consensus 228 dG~V~s~~aVGT 239 (1317)
T KOG0612|consen 228 DGTVRSSVAVGT 239 (1317)
T ss_pred CCcEEeccccCC
Confidence 455666666666
No 67
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=99.04 E-value=4.6e-05 Score=93.07 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=34.0
Q ss_pred CCCCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 275 PRVHRKSVNSSTQTMPLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLE 325 (1659)
Q Consensus 275 ~~~~~~~i~~~~~Ele~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~ 325 (1659)
-..|+.-++....++.-|..++.++.+.++.+.-.+...++.+..+...-.
T Consensus 228 eeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~ 278 (786)
T PF05483_consen 228 EEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTK 278 (786)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777777777777777777766666655544433
No 68
>KOG4674|consensus
Probab=99.03 E-value=2.4e-05 Score=106.55 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 300 VRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLEL 355 (1659)
Q Consensus 300 ~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~l 355 (1659)
......+++++..++..+..+..++..+..+..-...++..+...+..++.++..+
T Consensus 653 ~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL 708 (1822)
T KOG4674|consen 653 RENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETL 708 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444443
No 69
>PRK08356 hypothetical protein; Provisional
Probab=98.99 E-value=5.9e-10 Score=124.13 Aligned_cols=159 Identities=13% Similarity=0.094 Sum_probs=104.8
Q ss_pred CcEEEECCCh---HHHHHHHhhhCCCcccccccceec--------------CChHHHHHhccCCceEEEEEeCCeeeeec
Q psy3835 1475 RPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMH--------------CPQAAMEKGLADNLFVDYRKKGAYFECTS 1537 (1659)
Q Consensus 1475 RpvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttr--------------vs~~~f~~~i~~~~flE~~~~~g~~YGts 1537 (1659)
..|+|+||+| +|+.+.| ..+ . |. .++++++ +++..|..++..+.|+||+++.+++|||+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l-~~~-g-~~-~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~ 81 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFF-EEK-G-FC-RVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGED 81 (195)
T ss_pred EEEEEECCCCCCHHHHHHHH-HHC-C-Cc-EEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcH
Confidence 4588899998 9999988 443 2 55 5777774 45778888899999999999999999998
Q ss_pred HHHHHHHHHcCCCeEEEEcChhHHHHHHhc----CCccEEEEEecCCHHHHHHHHhhhccccCCCCcc------cHHHHH
Q psy3835 1538 VAAVKDACDKNNAHVILDVSLAGVERLHRQ----HVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKV------TAKAAK 1607 (1659)
Q Consensus 1538 ~~~V~~v~~~~gk~~iLdi~~~~~~~l~~~----~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~------~~~~~~ 1607 (1659)
. .++.+++. .+.|. .+.++|++.+.+. ....++|||.+|. +.+.+|+. .| +.. +.++++
T Consensus 82 ~-~~~~~~~~-~~~~~-~ividG~r~~~q~~~l~~~~~~vi~l~~~~-~~~~~Rl~---~R----~~~~~~~~~~~e~~~ 150 (195)
T PRK08356 82 I-LIRLAVDK-KRNCK-NIAIDGVRSRGEVEAIKRMGGKVIYVEAKP-EIRFERLR---RR----GAEKDKGIKSFEDFL 150 (195)
T ss_pred H-HHHHHHHH-hccCC-eEEEcCcCCHHHHHHHHhcCCEEEEEECCH-HHHHHHHH---hc----CCccccccccHHHHH
Confidence 4 22333333 22222 2444466555431 2235889998875 66777665 23 222 444554
Q ss_pred HHHHHHHHH--HHHcCCcceEEEeCCCCHHHHHHHHHHHHHhh
Q psy3835 1608 EMYEHGLKI--ECEHKHYISAVIPAGVNIAYMCTQIQTAVELE 1648 (1659)
Q Consensus 1608 ~~~~~a~~~--e~~~~~~fd~vi~n~~~~~~~~~~l~~ii~~~ 1648 (1659)
+++..-..+ ...+...+|++|+|+.+++.++.+|..++...
T Consensus 151 ~~~~~~~~l~~~~~~~~~aD~vI~N~~~~e~~~~~i~~~~~~~ 193 (195)
T PRK08356 151 KFDEWEEKLYHTTKLKDKADFVIVNEGTLEELRKKVEEILREL 193 (195)
T ss_pred HHHHHHHHhhhhhhHHHhCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 444321111 11233579999999559999999999998754
No 70
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.99 E-value=4.1e-06 Score=108.16 Aligned_cols=153 Identities=11% Similarity=0.109 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 457 IALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAV 536 (1659)
Q Consensus 457 ~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele 536 (1659)
.+.++++.+...+..+...+......+..++..+..+.++++.++++..++...+..+......+...+..+...+..+.
T Consensus 352 ~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 352 QLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444433333333333333444444444444444444444444444444444444444444444444444333
Q ss_pred HHHHHHHHH--hhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 537 RKIKTLEME--NKELVEDKKTLSYQIETLKREIASALHDRDKALK-ECNDLRERFGEFTAAKEECQREAFHARFEYA 610 (1659)
Q Consensus 537 ~ki~~le~e--l~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aie-E~e~l~er~~e~~~~~~e~q~e~~~~~~~~~ 610 (1659)
..+....-- -......+..+..++..|..++.. +++|..+++ +|+.+.+++..+......+...+...+..+.
T Consensus 432 r~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iq 507 (569)
T PRK04778 432 RYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQ 507 (569)
T ss_pred HHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332221000 122233457889999999999999 999999999 9999999999998876666665444444443
No 71
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.98 E-value=2.7e-05 Score=100.57 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 300 VRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLE 354 (1659)
Q Consensus 300 ~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~ 354 (1659)
.+.+..++..++.++..+..+...+..+...-+.-+..+..++..++.+.+.+..
T Consensus 104 ~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~ 158 (569)
T PRK04778 104 KHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLA 158 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444444444444444444444444433
No 72
>KOG0971|consensus
Probab=98.98 E-value=4e-05 Score=95.33 Aligned_cols=32 Identities=9% Similarity=-0.024 Sum_probs=19.5
Q ss_pred cccchhhccchHHHHHHHHHHHHHHHHHHHHH
Q psy3835 280 KSVNSSTQTMPLYVRQHNETVRRGDHTLKELE 311 (1659)
Q Consensus 280 ~~i~~~~~Ele~L~~q~~E~~~rl~~le~El~ 311 (1659)
-+..+++..-.+|..++.++..+++.+.-...
T Consensus 217 v~l~saskte~eLr~QvrdLtEkLetlR~kR~ 248 (1243)
T KOG0971|consen 217 VPLPSASKTEEELRAQVRDLTEKLETLRLKRA 248 (1243)
T ss_pred CCCCccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 44555555555677777777766666654443
No 73
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.97 E-value=7.7e-05 Score=104.62 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 484 NTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEME 545 (1659)
Q Consensus 484 ~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~le~e 545 (1659)
..+...+..++++.......+..+..+...++.+.+++..++..+..++.+++.+++.+...
T Consensus 472 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~ 533 (1201)
T PF12128_consen 472 EQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQ 533 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334444444444444444444444455555555555555555555555555555443
No 74
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.97 E-value=0.00013 Score=89.27 Aligned_cols=91 Identities=19% Similarity=0.138 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhhHhhhhHHHHHhhhhHhhhhhhhhhhHHHHHHHHH
Q psy3835 575 DKALKECNDLRERFGEFTAAKEECQREAFHARFEYAMRMGER-DSSRKERNEVEAASMDLFGKCQKERMDNLEANQEIDR 653 (1659)
Q Consensus 575 ~~aieE~e~l~er~~e~~~~~~e~q~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Ele~ 653 (1659)
.++..+++.++.-+.++.....+....|.|-=.++-.++.++ ..+++.+...++.+......=+.+-+-...+.-|+..
T Consensus 671 ~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDaEL~~~k~KE~E~~s~k~sLE~ELs~ 750 (786)
T PF05483_consen 671 EELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDAELGLYKKKEQEQSSHKASLELELSN 750 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444554444444444443333444333333333232 3556667777777666666555555555678888888
Q ss_pred HHHHHHHHHHHH
Q psy3835 654 LRKHTDKLQAEL 665 (1659)
Q Consensus 654 lr~~l~~l~~el 665 (1659)
++..+.++..+|
T Consensus 751 lk~el~slK~QL 762 (786)
T PF05483_consen 751 LKNELSSLKKQL 762 (786)
T ss_pred HHhHHHHHHHHH
Confidence 888888888888
No 75
>KOG0994|consensus
Probab=98.97 E-value=6.3e-06 Score=104.02 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHH
Q psy3835 515 MSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREI 567 (1659)
Q Consensus 515 ~~e~~~l~~el~~L~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei 567 (1659)
+++....+.-+....+.+.+++..++.|+.+......+-+.+++.....+.+.
T Consensus 1604 ~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A 1656 (1758)
T KOG0994|consen 1604 QEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQA 1656 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444333333333333333333333333
No 76
>KOG0994|consensus
Probab=98.92 E-value=1.2e-05 Score=101.49 Aligned_cols=32 Identities=3% Similarity=-0.059 Sum_probs=13.7
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 285 STQTMPLYVRQHNETVRRGDHTLKELEYYRGQ 316 (1659)
Q Consensus 285 ~~~Ele~L~~q~~E~~~rl~~le~El~~l~~~ 316 (1659)
+..+|...+.+..++..++.+++.+....+..
T Consensus 1420 ~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~ 1451 (1758)
T KOG0994|consen 1420 ADTQLRSKLAEAEQTLSMVREAKLSASEAQQS 1451 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33444444444444444444444443333333
No 77
>KOG4673|consensus
Probab=98.92 E-value=0.00027 Score=85.80 Aligned_cols=27 Identities=4% Similarity=-0.146 Sum_probs=15.8
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHH
Q psy3835 285 STQTMPLYVRQHNETVRRGDHTLKELE 311 (1659)
Q Consensus 285 ~~~Ele~L~~q~~E~~~rl~~le~El~ 311 (1659)
...+|+.+.+++..+.+.++.-++.+.
T Consensus 344 ~q~eLdK~~~~i~~Ln~~leaReaqll 370 (961)
T KOG4673|consen 344 VQLELDKTKKEIKMLNNALEAREAQLL 370 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666655544443
No 78
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.91 E-value=3.6e-08 Score=100.22 Aligned_cols=163 Identities=11% Similarity=0.050 Sum_probs=131.9
Q ss_pred CCCcEEEECCCh---HHHHHHHhhhCCCc--ccccccceec-----------CChHHHHHhccCCceEEEEEeCCeeeee
Q psy3835 1473 VLRPVILVGALS---DTVTDKLLQDFPDK--FVRCAPEIMH-----------CPQAAMEKGLADNLFVDYRKKGAYFECT 1536 (1659)
Q Consensus 1473 ~~RpvVl~Gp~g---~~l~~~Ll~~~p~~--f~~~v~~Ttr-----------vs~~~f~~~i~~~~flE~~~~~g~~YGt 1536 (1659)
..+.|++.|||| +||++.+....+.. |.+.--.-|| +|..+|.++-.+|.|-=.=+-||.+||+
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygi 83 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGI 83 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccC
Confidence 468899999998 99999877765554 6766666777 8999999999999998777899999999
Q ss_pred cHHHHHHHHHcCCCeEEEEcChhHHHHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHH
Q psy3835 1537 SVAAVKDACDKNNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLKI 1616 (1659)
Q Consensus 1537 s~~~V~~v~~~~gk~~iLdi~~~~~~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~~~ 1616 (1659)
+ ..|..-++. |.++|...+--.+-.++..+..-.+|.|.. +.+.|..|+. .|++++.+++..++.++...
T Consensus 84 p-~eId~wl~~-G~vvl~NgSRa~Lp~arrry~~Llvv~ita-~p~VLaqRL~-------~RGREs~eeI~aRL~R~a~~ 153 (192)
T COG3709 84 P-AEIDLWLAA-GDVVLVNGSRAVLPQARRRYPQLLVVCITA-SPEVLAQRLA-------ERGRESREEILARLARAARY 153 (192)
T ss_pred c-hhHHHHHhC-CCEEEEeccHhhhHHHHHhhhcceeEEEec-CHHHHHHHHH-------HhccCCHHHHHHHHHhhccc
Confidence 8 569999999 999999999888889998877666666666 5689999887 56788999999999887542
Q ss_pred HHHcCCcceEE-EeCCCCHHHHHHHHHHHHHhh
Q psy3835 1617 ECEHKHYISAV-IPAGVNIAYMCTQIQTAVELE 1648 (1659)
Q Consensus 1617 e~~~~~~fd~v-i~n~~~~~~~~~~l~~ii~~~ 1648 (1659)
-. .-+|.+ |.|++.++.+.+++...+...
T Consensus 154 ~~---~~~dv~~idNsG~l~~ag~~ll~~l~~~ 183 (192)
T COG3709 154 TA---GPGDVTTIDNSGELEDAGERLLALLHQD 183 (192)
T ss_pred cc---CCCCeEEEcCCCcHHHHHHHHHHHHHhh
Confidence 21 245554 556689999999999888744
No 79
>KOG0612|consensus
Probab=98.91 E-value=3.3e-05 Score=99.91 Aligned_cols=12 Identities=8% Similarity=-0.136 Sum_probs=5.1
Q ss_pred CCChHHHHHHHH
Q psy3835 781 NVSKRMVLETVR 792 (1659)
Q Consensus 781 ~~~~~~~~~~l~ 792 (1659)
...|.++.+.|.
T Consensus 923 ~ac~~e~~~~l~ 934 (1317)
T KOG0612|consen 923 LACLEETNRTLT 934 (1317)
T ss_pred HHHHHHHHHHhh
Confidence 334444444444
No 80
>KOG0977|consensus
Probab=98.89 E-value=6.4e-06 Score=101.01 Aligned_cols=31 Identities=0% Similarity=-0.138 Sum_probs=15.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 287 QTMPLYVRQHNETVRRGDHTLKELEYYRGQH 317 (1659)
Q Consensus 287 ~Ele~L~~q~~E~~~rl~~le~El~~l~~~l 317 (1659)
+||.+||.++...-.++..++++-..+...+
T Consensus 42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di 72 (546)
T KOG0977|consen 42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDI 72 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544444333
No 81
>KOG0999|consensus
Probab=98.88 E-value=0.00023 Score=84.50 Aligned_cols=185 Identities=15% Similarity=0.108 Sum_probs=98.9
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy3835 284 SSTQTMPLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRSGCCTQP 363 (1659)
Q Consensus 284 ~~~~Ele~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk~~~~~~e 363 (1659)
.+.++++.|+..+.-+..++.++..+.......--++..+...|+.+.++++.+|..++.+++.+...+-+.... +
T Consensus 5 ~aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~----h 80 (772)
T KOG0999|consen 5 MAEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQ----H 80 (772)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 456788889999888888888888887776666666777777888888888888888888887777776665520 0
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 364 ESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNG 443 (1659)
Q Consensus 364 ~~~~~~~~~~l~~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~ 443 (1659)
..........-...+.+-. ..-..+..++-+++.+++.....+...+++...+.....++...-...+.++-+
T Consensus 81 kk~~~~g~e~EesLLqESa-------akE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~r 153 (772)
T KOG0999|consen 81 KKVARDGEEREESLLQESA-------AKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRR 153 (772)
T ss_pred HHhhccchhhHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHH
Confidence 0000000000001111111 111123333444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 444 LKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDA 479 (1659)
Q Consensus 444 L~~el~~l~~~~~~l~~el~~l~~~l~el~~eieel 479 (1659)
|+.++++..-+-..+..+..+++++.-.+++....|
T Consensus 154 lr~elKe~KfRE~RllseYSELEEENIsLQKqVs~L 189 (772)
T KOG0999|consen 154 LRDELKEYKFREARLLSEYSELEEENISLQKQVSNL 189 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 555555554444455555555555544444444433
No 82
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.88 E-value=1.4e-06 Score=99.63 Aligned_cols=201 Identities=17% Similarity=0.214 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 381 ALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALR 460 (1659)
Q Consensus 381 le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~ 460 (1659)
..........++..+..++..++..+.....++......+.......++.+..+..+... ......
T Consensus 27 ~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r--------------~~~~ee 92 (237)
T PF00261_consen 27 AEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENR--------------EQSDEE 92 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHHH
Confidence 333444444444444444444444444444444444444444444433333333333333 333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 461 ERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIK 540 (1659)
Q Consensus 461 el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~ 540 (1659)
.+..++.+++++.....+....+.....++..++.+++...+..+.+...+..++.++..+...+..++.....+..+..
T Consensus 93 ri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~ 172 (237)
T PF00261_consen 93 RIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASERED 172 (237)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 33333333333333333333333333444444444444444444444444444444444445555555544445555555
Q ss_pred HHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 541 TLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAAK 595 (1659)
Q Consensus 541 ~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~~~ 595 (1659)
.++.++..+...+..+..+.+.+.+.+..+...+..+..++...+.+|..+...+
T Consensus 173 ~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 173 EYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555566666666666666665555543
No 83
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.88 E-value=2.1e-06 Score=98.22 Aligned_cols=187 Identities=17% Similarity=0.181 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchHHHHHHHHHH
Q psy3835 302 RGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRSGCCTQPESDDAGSADSLNQHYMSA 381 (1659)
Q Consensus 302 rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk~~~~~~e~~~~~~~~~~l~~~~~~l 381 (1659)
++..++.+++.+...+..+..++......+..+..++..+...+..++..+.... ..+...
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~e-------------------erL~~~ 62 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAE-------------------ERLEEA 62 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-------------------CCCCHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------------------HHHHHH
Confidence 4445555555555555555555555444455555554444444444444444433 222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 382 LNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRE 461 (1659)
Q Consensus 382 e~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~e 461 (1659)
..++..+....++.......++........++..++.++...+................+..++..+..++.+.+.++..
T Consensus 63 ~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~k 142 (237)
T PF00261_consen 63 TEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESK 142 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 33444444444444444444444444445555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 462 RNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAA 507 (1659)
Q Consensus 462 l~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~ 507 (1659)
+..++.++..+...+..++............++..+..|...+.++
T Consensus 143 i~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkea 188 (237)
T PF00261_consen 143 IKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEA 188 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5555554444444444444433333333333333333333333333
No 84
>KOG0977|consensus
Probab=98.87 E-value=7.2e-06 Score=100.55 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 372 DSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQ 447 (1659)
Q Consensus 372 ~~l~~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~e 447 (1659)
++......+++.++..++.++++++.++.+.+........++......+..++.+++-+...+..+..++..|+.+
T Consensus 102 ~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~e 177 (546)
T KOG0977|consen 102 DETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAE 177 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444433333333333333333333333333333333333333333333
No 85
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.87 E-value=1.9e-08 Score=125.90 Aligned_cols=128 Identities=25% Similarity=0.347 Sum_probs=96.1
Q ss_pred cccccC----CCCCCCCCCEEEEECCEeCCCCChHHHHHHHH--hcCCeEEEEEEeCCCCCcceEEEEEecc--------
Q psy3835 755 LSALLN----NPPSYKVNDCIVRVNNLDCSNVSKRMVLETVR--SSGTSALMVIRRRRVGARSLVTTQLQLN-------- 820 (1659)
Q Consensus 755 V~~v~p----~~g~l~~GD~Il~VNg~~~~~~~~~~~~~~l~--~~~~~v~l~v~R~~~~~~~~~~~~i~~~-------- 820 (1659)
|..|.| ..++|++||+|++|||.++.++.+. ...+. ..+..+.|+|.|++.. ..+.+.+.
T Consensus 261 V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~~~~~--~~~l~~~~~g~~v~l~v~R~g~~----~~~~v~l~~~~~~~~~ 334 (428)
T TIGR02037 261 VAQVLPGSPAEKAGLKAGDVILSVNGKPISSFADL--RRAIGTLKPGKKVTLGILRKGKE----KTITVTLGASPEEQAS 334 (428)
T ss_pred EEEccCCCChHHcCCCCCCEEEEECCEEcCCHHHH--HHHHHhcCCCCEEEEEEEECCEE----EEEEEEECcCCCcccc
Confidence 444544 5678999999999999999987543 33333 3678999999998522 12222221
Q ss_pred -CCCCcCeEec----------------CceEEEEeCCCChhhhcCCCCCCCEEEEeCCcccCCcccHHHHHHHHhcC--C
Q psy3835 821 -NSYDHGLTLE----------------SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDS--P 881 (1659)
Q Consensus 821 -~~~~lG~~~~----------------~gi~I~~v~~gs~A~~~g~L~~GD~Il~ing~~v~~~~~~~ea~~~l~~~--~ 881 (1659)
....+|+.+. .|++|..|.+||||++.| |++||.|++|||.++.+ +++...+|+.. +
T Consensus 335 ~~~~~lGi~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s---~~d~~~~l~~~~~g 410 (428)
T TIGR02037 335 SSNPFLGLTVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSS---VAELRKVLDRAKKG 410 (428)
T ss_pred ccccccceEEecCCHHHHHHcCCCcCcCceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCC---HHHHHHHHHhcCCC
Confidence 0123565552 589999999999999887 99999999999999998 78888888864 4
Q ss_pred CeEEEEEEccC
Q psy3835 882 DVLTITTLKPT 892 (1659)
Q Consensus 882 ~~v~l~v~r~~ 892 (1659)
..+.|.|.|..
T Consensus 411 ~~v~l~v~R~g 421 (428)
T TIGR02037 411 GRVALLILRGG 421 (428)
T ss_pred CEEEEEEEECC
Confidence 78999998875
No 86
>KOG4673|consensus
Probab=98.87 E-value=0.00057 Score=83.13 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 371 ADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAV--DKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQC 448 (1659)
Q Consensus 371 ~~~l~~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~--~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el 448 (1659)
.++..+.+..+++++..+-++.+.++.+++.+..++...- ..+....+.|..+..+=.++-+++-.....|+.|..++
T Consensus 404 ~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ 483 (961)
T KOG4673|consen 404 REEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKI 483 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 3455666777777777777777777777776666543222 23334444455555444444444444444444444443
Q ss_pred H
Q psy3835 449 T 449 (1659)
Q Consensus 449 ~ 449 (1659)
+
T Consensus 484 k 484 (961)
T KOG4673|consen 484 K 484 (961)
T ss_pred h
Confidence 3
No 87
>KOG3553|consensus
Probab=98.87 E-value=5.3e-09 Score=95.77 Aligned_cols=62 Identities=23% Similarity=0.455 Sum_probs=53.2
Q ss_pred ccCeeecCCCC-----CCCCCCCccEEEEeeccCCcc-CCcccccceeeeeccc-cchhhhh-HHHHHHh
Q psy3835 76 ALGLELVGGRD-----DPFYPNDSSIYVSNIVKGSVT-DGKLKKKEEVARIKKQ-CEDMNQE-KNTALRE 137 (1659)
Q Consensus 76 ~~g~~~~~g~~-----~p~~~~d~~i~v~~v~~g~~a-~g~l~~~d~i~~vn~~-~~~~~~~-~~~~~~~ 137 (1659)
-+||.|-||.| ||+---|.|||||.|..||+| -.+||.+|.||+|||- +-+++|+ ||.-++.
T Consensus 36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k 105 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITK 105 (124)
T ss_pred EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhH
Confidence 38999999998 566667999999999999965 4899999999999999 9999998 6644433
No 88
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.87 E-value=1.6e-08 Score=126.65 Aligned_cols=132 Identities=14% Similarity=0.240 Sum_probs=98.9
Q ss_pred cccccC----CCCCCCCCCEEEEECCEeCCCCChHHHHHHHHhcCCeEEEEEEeCCCCCcceEEEEEecc----------
Q psy3835 755 LSALLN----NPPSYKVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARSLVTTQLQLN---------- 820 (1659)
Q Consensus 755 V~~v~p----~~g~l~~GD~Il~VNg~~~~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~~~~~~~~i~~~---------- 820 (1659)
|..|.| +.+|||+||+|++|||+++.++......-.....+..+.++|.|++..... .+++...
T Consensus 130 V~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~--~v~l~~~~~~~~~~~~~ 207 (449)
T PRK10779 130 VGEIAPNSIAAQAQIAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQRR--DKTLDLRHWAFEPDKQD 207 (449)
T ss_pred ccccCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccceE--EEEecccccccCccccc
Confidence 555555 889999999999999999999966544444444677899999998643221 2222110
Q ss_pred CCCCcCeEec---CceEEEEeCCCChhhhcCCCCCCCEEEEeCCcccCCcccHHHHHHHHhcCC-CeEEEEEEccC
Q psy3835 821 NSYDHGLTLE---SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP-DVLTITTLKPT 892 (1659)
Q Consensus 821 ~~~~lG~~~~---~gi~I~~v~~gs~A~~~g~L~~GD~Il~ing~~v~~~~~~~ea~~~l~~~~-~~v~l~v~r~~ 892 (1659)
....+|+... .+.+|..|.+||||++.| |++||+|++|||.++.+ +++....++..+ ..+.+.|.|..
T Consensus 208 ~~~~lGl~~~~~~~~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~s---~~dl~~~l~~~~~~~v~l~v~R~g 279 (449)
T PRK10779 208 PVSSLGIRPRGPQIEPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLTQ---WQTFVTLVRDNPGKPLALEIERQG 279 (449)
T ss_pred hhhcccccccCCCcCcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcCC---HHHHHHHHHhCCCCEEEEEEEECC
Confidence 1123665442 247899999999999887 99999999999999988 788888887654 68899998875
No 89
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.86 E-value=2.5e-05 Score=94.01 Aligned_cols=37 Identities=3% Similarity=-0.018 Sum_probs=27.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 287 QTMPLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQ 323 (1659)
Q Consensus 287 ~Ele~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~ 323 (1659)
.+|..||.++.....++..++.+-..+...+..+...
T Consensus 4 ~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~ 40 (312)
T PF00038_consen 4 EELQSLNDRLASYIEKVRFLEQENKRLESEIEELREK 40 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 4678899999999999999888877777777655554
No 90
>PRK10139 serine endoprotease; Provisional
Probab=98.86 E-value=2e-08 Score=125.12 Aligned_cols=128 Identities=22% Similarity=0.350 Sum_probs=96.0
Q ss_pred cccccC----CCCCCCCCCEEEEECCEeCCCCChHHHHHHHH--hcCCeEEEEEEeCCCCCcceEEEEEeccCC-----C
Q psy3835 755 LSALLN----NPPSYKVNDCIVRVNNLDCSNVSKRMVLETVR--SSGTSALMVIRRRRVGARSLVTTQLQLNNS-----Y 823 (1659)
Q Consensus 755 V~~v~p----~~g~l~~GD~Il~VNg~~~~~~~~~~~~~~l~--~~~~~v~l~v~R~~~~~~~~~~~~i~~~~~-----~ 823 (1659)
|..|.| +.++|++||.|++|||.++.+|.. ....+. ..|..+.|+|.|++.. ..+.+.+... .
T Consensus 294 V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~d--l~~~l~~~~~g~~v~l~V~R~G~~----~~l~v~~~~~~~~~~~ 367 (455)
T PRK10139 294 VSEVLPNSGSAKAGVKAGDIITSLNGKPLNSFAE--LRSRIATTEPGTKVKLGLLRNGKP----LEVEVTLDTSTSSSAS 367 (455)
T ss_pred EEEECCCChHHHCCCCCCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEEEEECCEE----EEEEEEECCCCCcccc
Confidence 445554 679999999999999999999844 344444 3678899999998522 1222322110 1
Q ss_pred -------CcCeEec--------CceEEEEeCCCChhhhcCCCCCCCEEEEeCCcccCCcccHHHHHHHHhcCCCeEEEEE
Q psy3835 824 -------DHGLTLE--------SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITT 888 (1659)
Q Consensus 824 -------~lG~~~~--------~gi~I~~v~~gs~A~~~g~L~~GD~Il~ing~~v~~~~~~~ea~~~l~~~~~~v~l~v 888 (1659)
..|+.+. .|++|..|.++|||++.| |++||.|++|||.++.+ +++...+|+..+..+.|.|
T Consensus 368 ~~~~~~~~~g~~l~~~~~~~~~~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~---~~~~~~~l~~~~~~v~l~v 443 (455)
T PRK10139 368 AEMITPALQGATLSDGQLKDGTKGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNS---IAEMRKVLAAKPAIIALQI 443 (455)
T ss_pred cccccccccccEecccccccCCCceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC---HHHHHHHHHhCCCeEEEEE
Confidence 1233221 479999999999999887 99999999999999999 8888888887778889999
Q ss_pred EccC
Q psy3835 889 LKPT 892 (1659)
Q Consensus 889 ~r~~ 892 (1659)
.|..
T Consensus 444 ~R~g 447 (455)
T PRK10139 444 VRGN 447 (455)
T ss_pred EECC
Confidence 8875
No 91
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.82 E-value=0.00015 Score=93.42 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=25.4
Q ss_pred hHhhhhHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3835 619 SRKERNEVEAASMDLFGKCQKERMDNLEANQEIDRLRKHTDKLQAEL 665 (1659)
Q Consensus 619 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Ele~lr~~l~~l~~el 665 (1659)
...........+..+...+++..-++......+......+..+..+.
T Consensus 442 y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t 488 (560)
T PF06160_consen 442 YLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKT 488 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555556666666666666555555
No 92
>PRK10942 serine endoprotease; Provisional
Probab=98.81 E-value=3.2e-08 Score=123.93 Aligned_cols=128 Identities=22% Similarity=0.336 Sum_probs=96.6
Q ss_pred cccccC----CCCCCCCCCEEEEECCEeCCCCChHHHHHHHH--hcCCeEEEEEEeCCCCCcceEEEEEec--c------
Q psy3835 755 LSALLN----NPPSYKVNDCIVRVNNLDCSNVSKRMVLETVR--SSGTSALMVIRRRRVGARSLVTTQLQL--N------ 820 (1659)
Q Consensus 755 V~~v~p----~~g~l~~GD~Il~VNg~~~~~~~~~~~~~~l~--~~~~~v~l~v~R~~~~~~~~~~~~i~~--~------ 820 (1659)
|..|.| ..++|++||.|++|||.++.++... ...+. ..+..+.|+|.|++... .+.+.+ .
T Consensus 315 V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~dl--~~~l~~~~~g~~v~l~v~R~G~~~----~v~v~l~~~~~~~~~ 388 (473)
T PRK10942 315 VSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAAL--RAQVGTMPVGSKLTLGLLRDGKPV----NVNVELQQSSQNQVD 388 (473)
T ss_pred EEEECCCChHHHcCCCCCCEEEEECCEECCCHHHH--HHHHHhcCCCCEEEEEEEECCeEE----EEEEEeCcCcccccc
Confidence 445544 6689999999999999999998543 33443 35788999999986221 222222 1
Q ss_pred -CCCCcCeEe--------cCceEEEEeCCCChhhhcCCCCCCCEEEEeCCcccCCcccHHHHHHHHhcCCCeEEEEEEcc
Q psy3835 821 -NSYDHGLTL--------ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 891 (1659)
Q Consensus 821 -~~~~lG~~~--------~~gi~I~~v~~gs~A~~~g~L~~GD~Il~ing~~v~~~~~~~ea~~~l~~~~~~v~l~v~r~ 891 (1659)
....+|+.. ..|++|..|.|+|+|++.| |++||.|++|||.+|.+ +++...+++..+..+.|.|.|.
T Consensus 389 ~~~~~lGl~g~~l~~~~~~~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s---~~dl~~~l~~~~~~v~l~V~R~ 464 (473)
T PRK10942 389 SSNIFNGIEGAELSNKGGDKGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKN---IAELRKILDSKPSVLALNIQRG 464 (473)
T ss_pred cccccccceeeecccccCCCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC---HHHHHHHHHhCCCeEEEEEEEC
Confidence 111255433 1589999999999999886 99999999999999999 8888888888778899999887
Q ss_pred C
Q psy3835 892 T 892 (1659)
Q Consensus 892 ~ 892 (1659)
.
T Consensus 465 g 465 (473)
T PRK10942 465 D 465 (473)
T ss_pred C
Confidence 5
No 93
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.81 E-value=8.9e-05 Score=103.31 Aligned_cols=8 Identities=38% Similarity=0.642 Sum_probs=2.9
Q ss_pred cCeeecCC
Q psy3835 77 LGLELVGG 84 (1659)
Q Consensus 77 ~g~~~~~g 84 (1659)
.+|....|
T Consensus 104 V~l~~~a~ 111 (1486)
T PRK04863 104 VRLQQVAG 111 (1486)
T ss_pred EEEEeecC
Confidence 33333333
No 94
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.79 E-value=0.00017 Score=92.74 Aligned_cols=56 Identities=14% Similarity=0.193 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 300 VRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLEL 355 (1659)
Q Consensus 300 ~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~l 355 (1659)
.+.+..+++.+..++..+..+...+..+...-..-+.++..++..++.+.+.+...
T Consensus 100 ~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~ 155 (560)
T PF06160_consen 100 KQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAH 155 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444455555544444444445555555555555544444
No 95
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.78 E-value=0.00017 Score=92.12 Aligned_cols=31 Identities=13% Similarity=0.204 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 573 DRDKALKECNDLRERFGEFTAAKEECQREAF 603 (1659)
Q Consensus 573 ~~~~aieE~e~l~er~~e~~~~~~e~q~e~~ 603 (1659)
....+.+++...+++++.+......++.++.
T Consensus 280 ~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls 310 (617)
T PF15070_consen 280 QLEMAHQELQEAQEHLEALSQQNQQLQAQLS 310 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3345556666666766666666555555533
No 96
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.75 E-value=1.6e-09 Score=144.47 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=0.0
Q ss_pred cccchhhccchHHHHHHHHH
Q psy3835 280 KSVNSSTQTMPLYVRQHNET 299 (1659)
Q Consensus 280 ~~i~~~~~Ele~L~~q~~E~ 299 (1659)
+.+++...+|+.++..+..+
T Consensus 131 ~~~~eL~eqle~lqk~k~~l 150 (859)
T PF01576_consen 131 DAVAELNEQLEQLQKQKAKL 150 (859)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 97
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.74 E-value=0.00093 Score=91.75 Aligned_cols=12 Identities=8% Similarity=0.077 Sum_probs=5.9
Q ss_pred cHHHHHHHHhcC
Q psy3835 869 SAREGMALLSDS 880 (1659)
Q Consensus 869 ~~~ea~~~l~~~ 880 (1659)
+.+.++.+|...
T Consensus 858 ~l~~l~~~l~~i 869 (908)
T COG0419 858 RLEKLAEILEEL 869 (908)
T ss_pred HHHHHHHHHHHH
Confidence 344555555543
No 98
>KOG0018|consensus
Probab=98.72 E-value=0.0001 Score=94.55 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=23.4
Q ss_pred EEEeCCcccCCCCCHHHHHHHhhc-------------CCCeEEEEEecCCC
Q psy3835 232 VLSINNRTVDGLSSAREGMALLSD-------------SPDVLTITTLKPTS 269 (1659)
Q Consensus 232 i~~in~~~~~~~~s~~e~~~~l~~-------------~~~~~~i~~~k~~~ 269 (1659)
=-.|||.. .|+++-..-|.+ +|+|.+|+.+-|+=
T Consensus 98 eY~IDne~----VT~eeY~~eLekinIlVkARNFLVFQGdVE~IA~k~PkE 144 (1141)
T KOG0018|consen 98 EYMIDNEI----VTREEYLEELEKINILVKARNFLVFQGDVEKIAGKNPKE 144 (1141)
T ss_pred eEEEccee----ccHHHHHHHHhhcceeeeeeeEEEecChHHHHhccCHHH
Confidence 34577776 357776666665 88888888886654
No 99
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.71 E-value=2.5e-09 Score=142.60 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 496 DLKRLTEERNAAMQEYSLIMSERDSVHKEME 526 (1659)
Q Consensus 496 eleelkee~~~~~~el~~l~~e~~~l~~el~ 526 (1659)
.+..+.+.++.+......+.....++..++.
T Consensus 329 ~L~el~e~le~~~~~~~~LeK~k~rL~~Ele 359 (859)
T PF01576_consen 329 KLQELQEQLEEANAKVSSLEKTKKRLQGELE 359 (859)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 100
>KOG0995|consensus
Probab=98.70 E-value=0.00053 Score=83.36 Aligned_cols=67 Identities=18% Similarity=0.268 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 383 NKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCT 449 (1659)
Q Consensus 383 ~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~ 449 (1659)
.+++.+++.+..|+......+.-+..++.+....+..+..++.++...+.+++.++.+..+|+.+++
T Consensus 259 ~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 259 GKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555555555555555555555555544
No 101
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.69 E-value=0.00057 Score=87.55 Aligned_cols=57 Identities=26% Similarity=0.282 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3835 300 VRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELR 356 (1659)
Q Consensus 300 ~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk 356 (1659)
..++..++.|+...+..+.....+.+.+......+......++.+...|..++.+++
T Consensus 33 ~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K 89 (717)
T PF09730_consen 33 QQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYK 89 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444443
No 102
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.68 E-value=1.7e-07 Score=89.19 Aligned_cols=80 Identities=35% Similarity=0.485 Sum_probs=70.7
Q ss_pred EEEEEecCCCCceEEEEecCC--CcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEE
Q psy3835 1130 RRVHIDKSVEPLGIQIQCLDS--GGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQ 1207 (1659)
Q Consensus 1130 ~~v~l~k~~~~lG~sl~~~~~--~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~ 1207 (1659)
..+.+.+....|||.+..... .|++|..|.++|+|+++||++||.|++|||..+.++++.+....+..++..+.|.+.
T Consensus 3 ~~~~~~~~~~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i~ 82 (85)
T smart00228 3 RLVELEKGGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVL 82 (85)
T ss_pred EEEEEEECCCcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEE
Confidence 456677777899999987643 699999999999999999999999999999999999999999998887778888887
Q ss_pred ec
Q psy3835 1208 YS 1209 (1659)
Q Consensus 1208 r~ 1209 (1659)
|+
T Consensus 83 r~ 84 (85)
T smart00228 83 RG 84 (85)
T ss_pred eC
Confidence 75
No 103
>KOG0018|consensus
Probab=98.67 E-value=0.00032 Score=90.20 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 556 LSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAAKEECQRE 601 (1659)
Q Consensus 556 l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~~~~e~q~e 601 (1659)
+++++++....|..+ .=|..|.+.+..++ +.+...+.+.+.++
T Consensus 934 L~~kl~e~~~~l~~~-~Pn~kA~~~~d~v~--~~~~~~EfE~ark~ 976 (1141)
T KOG0018|consen 934 LQQKLEEKQSVLNRI-APNLKALERLDEVR--FQEINEEFEAARKE 976 (1141)
T ss_pred HHHHHHHHHHHHHHh-CcchHHHhhhhhHH--HHHhhHHHHHHHHH
Confidence 666666666666666 44666777777766 55555544444443
No 104
>KOG3551|consensus
Probab=98.67 E-value=6.4e-08 Score=109.46 Aligned_cols=82 Identities=32% Similarity=0.458 Sum_probs=75.3
Q ss_pred CeEEEEEecC-CCCceEEEEec--CCCcEEEEEeCCCChhhhcC-CCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEE
Q psy3835 1128 ELRRVHIDKS-VEPLGIQIQCL--DSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSIT 1203 (1659)
Q Consensus 1128 ~~~~v~l~k~-~~~lG~sl~~~--~~~gv~I~~V~~gs~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~ 1203 (1659)
..|.|.+.|- .+|||++|.|| +.-+|+|+.|++|-+|+++| |..||.|++|||.++.+.+|++|++.|+++|..|.
T Consensus 84 ~~R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~ 163 (506)
T KOG3551|consen 84 AERRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVL 163 (506)
T ss_pred ccceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceee
Confidence 3488888886 68999999999 34699999999999999999 99999999999999999999999999999999999
Q ss_pred EEEEec
Q psy3835 1204 MLVQYS 1209 (1659)
Q Consensus 1204 l~v~r~ 1209 (1659)
|.|.+-
T Consensus 164 levKy~ 169 (506)
T KOG3551|consen 164 LEVKYM 169 (506)
T ss_pred eeeeee
Confidence 998763
No 105
>KOG3549|consensus
Probab=98.67 E-value=4e-08 Score=109.24 Aligned_cols=87 Identities=28% Similarity=0.408 Sum_probs=79.5
Q ss_pred CCCCCCCeEEEEEecCC-CCceEEEEecC--CCcEEEEEeCCCChhhhcC-CCCCCEEEeeCCeecCCCCHHHHHHHHHh
Q psy3835 1122 HKPHPGELRRVHIDKSV-EPLGIQIQCLD--SGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQ 1197 (1659)
Q Consensus 1122 ~~~~~~~~~~v~l~k~~-~~lG~sl~~~~--~~gv~I~~V~~gs~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~ 1197 (1659)
++|.....|+|+|.+.. +|||++|.||. +-+|+|+.|..+-+|+..| |-+||-|++|||+.|..++|++++.+|++
T Consensus 48 G~p~~s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRN 127 (505)
T KOG3549|consen 48 GPPMESKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRN 127 (505)
T ss_pred CCCccCCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHh
Confidence 34556678999999984 89999999993 4699999999999999999 99999999999999999999999999999
Q ss_pred CCCeEEEEEEe
Q psy3835 1198 CGNSITMLVQY 1208 (1659)
Q Consensus 1198 ~~~~v~l~v~r 1208 (1659)
+|+.|+|+|.+
T Consensus 128 AGdeVtlTV~~ 138 (505)
T KOG3549|consen 128 AGDEVTLTVKH 138 (505)
T ss_pred cCCEEEEEeHh
Confidence 99999999975
No 106
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.67 E-value=0.0011 Score=91.13 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=8.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q psy3835 289 MPLYVRQHNETVRRGDHTLKELE 311 (1659)
Q Consensus 289 le~L~~q~~E~~~rl~~le~El~ 311 (1659)
++.+..+......++.....++.
T Consensus 279 ~~~~~~~~~~~~~~L~~~~~e~~ 301 (908)
T COG0419 279 LERLLEELEEKIERLEELEREIE 301 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444333
No 107
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.67 E-value=1.4e-07 Score=89.12 Aligned_cols=77 Identities=35% Similarity=0.567 Sum_probs=68.0
Q ss_pred EEEEEecC-CCCceEEEEecCC--CcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEE
Q psy3835 1130 RRVHIDKS-VEPLGIQIQCLDS--GGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLV 1206 (1659)
Q Consensus 1130 ~~v~l~k~-~~~lG~sl~~~~~--~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v 1206 (1659)
+.+.+.+. ..+|||.+..... .|++|..|.++|||+++||++||+|++|||.++.++++.++...++.....++|.|
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~v 81 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV 81 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEEE
Confidence 46777777 6899999987743 68999999999999999999999999999999999999999999998766777765
No 108
>KOG0995|consensus
Probab=98.65 E-value=0.0011 Score=80.83 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy3835 382 LNKYETIKDEYDALR 396 (1659)
Q Consensus 382 e~~le~l~~e~~~l~ 396 (1659)
+.+++.++.+.++|+
T Consensus 307 EeE~e~lq~~~d~Lk 321 (581)
T KOG0995|consen 307 EEEIEKLQKENDELK 321 (581)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 109
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.64 E-value=1.4e-07 Score=86.37 Aligned_cols=67 Identities=34% Similarity=0.482 Sum_probs=60.7
Q ss_pred CceEEEEecCCCcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCC-CeEEEEE
Q psy3835 1140 PLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCG-NSITMLV 1206 (1659)
Q Consensus 1140 ~lG~sl~~~~~~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~-~~v~l~v 1206 (1659)
+|||.+......+++|..|.+++||+.+||++||.|++|||.++.++++.++..+++... ..++|.|
T Consensus 2 ~~G~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTEGGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 689999987656999999999999999999999999999999999999999999998764 6787765
No 110
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.62 E-value=2.3e-07 Score=87.77 Aligned_cols=78 Identities=40% Similarity=0.581 Sum_probs=67.0
Q ss_pred eEEEEecCCcCccCeEEecCCC--cceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCeEEEEE
Q psy3835 1238 RFLMIETRKCSNLGISLVGGNA--VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA 1315 (1659)
Q Consensus 1238 ~~v~l~k~~~~~lGi~l~gg~~--~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v 1315 (1659)
+.+.+.+....+|||.+.++.. .|++|..|.++|+|+++||++||+|++|||.++.+++..++...+......++|.+
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~v 81 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV 81 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEEE
Confidence 3466777656789999987653 58999999999999999999999999999999999999999998887767777765
No 111
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.61 E-value=0.00096 Score=85.56 Aligned_cols=55 Identities=11% Similarity=0.041 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 291 LYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDK 345 (1659)
Q Consensus 291 ~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~ 345 (1659)
.|..++.+++..++.++.++...+.....+.....++....+.++.+...++.++
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ 85 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEI 85 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333333333333333333333333333333333
No 112
>KOG0978|consensus
Probab=98.61 E-value=0.00055 Score=86.55 Aligned_cols=116 Identities=17% Similarity=0.207 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHH
Q psy3835 479 AVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSY 558 (1659)
Q Consensus 479 le~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~le~el~~l~~e~~~l~~ 558 (1659)
++.++..+-.++.+.....-++-.+.....+.+..+..++..+...+..+......+...+..++.+...+......+.+
T Consensus 466 ~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~ 545 (698)
T KOG0978|consen 466 MQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIK 545 (698)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHH
Confidence 33333333333333333333344444444445555555555555555555555555555555555554444444444555
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3835 559 QIETLKREIASALHDRDKALKECNDLRERFGEFTAA 594 (1659)
Q Consensus 559 ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~~ 594 (1659)
++..+...++.......++-+.+..++.+.+.....
T Consensus 546 el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~ 581 (698)
T KOG0978|consen 546 ELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAK 581 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555554444444444443
No 113
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.59 E-value=0.00059 Score=82.13 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy3835 553 KKTLSYQIETLKREIASALHDRDKALKECNDLR 585 (1659)
Q Consensus 553 ~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~ 585 (1659)
...++..+..|+.++..+...+..+...+.++.
T Consensus 218 ~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 218 LKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 333344444444444444444444444444333
No 114
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.58 E-value=2.2e-07 Score=115.20 Aligned_cols=122 Identities=18% Similarity=0.206 Sum_probs=91.7
Q ss_pred cccccC----CCCCCCCCCEEEEECCEeCCCCChHHHHHHHHhcCCeEEEEEEeCCCCCcceEEEEEeccCCCCcCeEe-
Q psy3835 755 LSALLN----NPPSYKVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARSLVTTQLQLNNSYDHGLTL- 829 (1659)
Q Consensus 755 V~~v~p----~~g~l~~GD~Il~VNg~~~~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~~~~~~~~i~~~~~~~lG~~~- 829 (1659)
|..|.| +.++|++||+|++|||.++.++.+..-. +......+.+++.|++... .+.+. +|+..
T Consensus 132 V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~~~dl~~~--ia~~~~~v~~~I~r~g~~~----~l~v~------l~~~~~ 199 (420)
T TIGR00054 132 IELLDKNSIALEAGIEPGDEILSVNGNKIPGFKDVRQQ--IADIAGEPMVEILAERENW----TFEVM------KELIPR 199 (420)
T ss_pred eeccCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHH--HHhhcccceEEEEEecCce----Eeccc------ccceec
Confidence 555555 8899999999999999999998554332 2222267889999975331 12221 22221
Q ss_pred --cCceEEEEeCCCChhhhcCCCCCCCEEEEeCCcccCCcccHHHHHHHHhcCC-CeEEEEEEccC
Q psy3835 830 --ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP-DVLTITTLKPT 892 (1659)
Q Consensus 830 --~~gi~I~~v~~gs~A~~~g~L~~GD~Il~ing~~v~~~~~~~ea~~~l~~~~-~~v~l~v~r~~ 892 (1659)
..|++|..|.++|||++.| |++||+|++|||.++.+ +++....++..+ ..+.+.|.|..
T Consensus 200 ~~~~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s---~~dl~~~l~~~~~~~v~l~v~R~g 261 (420)
T TIGR00054 200 GPKIEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRS---WTDFVSAVKENPGKSMDIKVERNG 261 (420)
T ss_pred CCCcCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECCC---HHHHHHHHHhCCCCceEEEEEECC
Confidence 2478999999999999876 99999999999999998 888888887754 67899998875
No 115
>KOG0946|consensus
Probab=98.58 E-value=3.3e-05 Score=95.66 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3835 318 QAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELR 356 (1659)
Q Consensus 318 ~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk 356 (1659)
+.+.....+++.+.++++.++.....+...++.++..++
T Consensus 674 e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk 712 (970)
T KOG0946|consen 674 ENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLK 712 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555555565555555
No 116
>KOG1029|consensus
Probab=98.58 E-value=0.00051 Score=84.52 Aligned_cols=54 Identities=28% Similarity=0.474 Sum_probs=46.0
Q ss_pred ceeeeccccCCCCCccccccccCCcEEEEecCCCCCCCCcEEEEEeccCCCcccccCcCChhHHH
Q psy3835 1333 FYMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYKVE 1397 (1659)
Q Consensus 1333 ~yvra~f~y~~~~~~~~~L~f~~gdil~v~~t~~~~~~~~W~a~~v~~~~~~~~~GlIPs~~~~e 1397 (1659)
+-|=|.+||.+.+++ +|+|++|||+.|+| +++++||+.-+- +..||.||.+.+.
T Consensus 1054 ~qviamYdY~AqndD--ELsF~kgdiI~Vln---kdepeWW~Ge~n------g~sGLFPSNYV~k 1107 (1118)
T KOG1029|consen 1054 CQVIAMYDYEAQNDD--ELSFKKGDIINVLN---KDEPEWWSGERN------GKSGLFPSNYVQK 1107 (1118)
T ss_pred ceeEEeeccccCCcc--cccccCCCEEEecC---CCChhhhccccc------CccccCccccccc
Confidence 457799999999999 99999999999999 689999976432 4699999998653
No 117
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=98.58 E-value=0.007 Score=75.44 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy3835 376 QHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLE 414 (1659)
Q Consensus 376 ~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le 414 (1659)
.+...+.+.++.++++.+.|..-.+-+.-.+..+..-+.
T Consensus 242 ~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~ 280 (739)
T PF07111_consen 242 PEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILT 280 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666555555555555444443333
No 118
>KOG1029|consensus
Probab=98.57 E-value=0.00029 Score=86.55 Aligned_cols=54 Identities=20% Similarity=0.437 Sum_probs=39.6
Q ss_pred eeeccccCCCCCccccccccCCcEEEEecCCCCCCCCcEEEEEeccCCCcccccCcCChh
Q psy3835 1335 MRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKY 1394 (1659)
Q Consensus 1335 vra~f~y~~~~~~~~~L~f~~gdil~v~~t~~~~~~~~W~a~~v~~~~~~~~~GlIPs~~ 1394 (1659)
-.+..+|.+.... .|++..|.++-|.. +++.|||..-.. ..|.....|..|-.+
T Consensus 982 AqVia~yvAs~pe--QLsla~GqlIlIrk---Kn~sGWWeGELq-arGkkrq~GWFPa~y 1035 (1118)
T KOG1029|consen 982 AQVIADYVASGPE--QLSLAPGQLILIRK---KNASGWWEGELQ-ARGKKRQIGWFPAEY 1035 (1118)
T ss_pred hhhhhhhhccCch--hccccCccEEEEEe---cCCCccchhhHh-hcCCccccccccHHH
Confidence 3455677766655 89999999999998 578899975322 245556789999765
No 119
>KOG4593|consensus
Probab=98.57 E-value=0.002 Score=80.12 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=15.8
Q ss_pred CCcccccceEEEEeCCCCcccc
Q psy3835 201 HGLTLESGLYICKISPGSLAAK 222 (1659)
Q Consensus 201 ~g~~~~~~~~v~~i~~g~~a~~ 222 (1659)
.++...++.+|.+-+||++.+.
T Consensus 23 ~~~~~~s~l~~~s~s~g~sP~~ 44 (716)
T KOG4593|consen 23 QPVESGSQLDISSSSPGSSPNL 44 (716)
T ss_pred cccccccccchhccCCCCCccc
Confidence 3566677788888888876543
No 120
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.56 E-value=0.0021 Score=82.34 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 313 YRGQHQAAMAQLEAAAQESSSLRSKYSDL 341 (1659)
Q Consensus 313 l~~~l~el~~~l~~lk~e~~~l~~e~~el 341 (1659)
++..+..+..++..++++.......+.+|
T Consensus 27 ~qqr~~qmseev~~L~eEk~~~~~~V~eL 55 (617)
T PF15070_consen 27 WQQRMQQMSEEVRTLKEEKEHDISRVQEL 55 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444433333333333333
No 121
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.56 E-value=0.00015 Score=94.92 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=11.7
Q ss_pred EEeCCcccCCCCCHHHHHHHhhc
Q psy3835 233 LSINNRTVDGLSSAREGMALLSD 255 (1659)
Q Consensus 233 ~~in~~~~~~~~s~~e~~~~l~~ 255 (1659)
+.+||..+....+.++....|..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~i~~ 121 (562)
T PHA02562 99 IYCNGKLLDESASSKDFQKYFEQ 121 (562)
T ss_pred EecCCEEEeccccHHHHHHHHHH
Confidence 34577655432235555555554
No 122
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.55 E-value=4e-05 Score=100.19 Aligned_cols=23 Identities=9% Similarity=-0.064 Sum_probs=8.9
Q ss_pred HHHHHHhhcCCCeEEEEEecCCC
Q psy3835 247 REGMALLSDSPDVLTITTLKPTS 269 (1659)
Q Consensus 247 ~e~~~~l~~~~~~~~i~~~k~~~ 269 (1659)
.....+|.-..+...-+|+-|..
T Consensus 117 ~~i~~~~g~~~~~f~~~v~l~q~ 139 (562)
T PHA02562 117 KYFEQMLGMNYKSFKQIVVLGTA 139 (562)
T ss_pred HHHHHHHCCCHHHHhHHheeccC
Confidence 33444444333332222444544
No 123
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.55 E-value=1.5e-07 Score=88.97 Aligned_cols=73 Identities=30% Similarity=0.425 Sum_probs=58.2
Q ss_pred CceEEEEecCC-CcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEEecCCc
Q psy3835 1140 PLGIQIQCLDS-GGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDK 1212 (1659)
Q Consensus 1140 ~lG~sl~~~~~-~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~ 1212 (1659)
+||+.+..... .|++|..|.++|||+++||++||.|++|||.++.++.+......-..++..|.|.|.|++..
T Consensus 2 ~lGv~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v~R~g~~ 75 (82)
T PF13180_consen 2 GLGVTVQNLSDTGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTLTVLRDGEE 75 (82)
T ss_dssp E-SEEEEECSCSSSEEEEEESTTSHHHHTTS-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEEEEEETTEE
T ss_pred EECeEEEEccCCCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 57888887643 69999999999999999999999999999999977655543333345688999999998763
No 124
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.55 E-value=5.7e-07 Score=85.51 Aligned_cols=79 Identities=42% Similarity=0.524 Sum_probs=68.1
Q ss_pred EEEEecCCcCccCeEEecCCC--cceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCeEEEEEE
Q psy3835 1239 FLMIETRKCSNLGISLVGGNA--VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQ 1316 (1659)
Q Consensus 1239 ~v~l~k~~~~~lGi~l~gg~~--~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~ 1316 (1659)
.+.+.+.. ..|||.+..+.. .|++|..|.++|+|+++||++||+|++|||+.+.++++.+....+...+..+.|.+.
T Consensus 4 ~~~~~~~~-~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i~ 82 (85)
T smart00228 4 LVELEKGG-GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVL 82 (85)
T ss_pred EEEEEECC-CcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEE
Confidence 45666666 689999987644 699999999999999999999999999999999999999888888777778888887
Q ss_pred eC
Q psy3835 1317 YS 1318 (1659)
Q Consensus 1317 r~ 1318 (1659)
|+
T Consensus 83 r~ 84 (85)
T smart00228 83 RG 84 (85)
T ss_pred eC
Confidence 75
No 125
>KOG0946|consensus
Probab=98.54 E-value=7.9e-05 Score=92.43 Aligned_cols=18 Identities=17% Similarity=0.387 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3835 647 ANQEIDRLRKHTDKLQAE 664 (1659)
Q Consensus 647 ~~~Ele~lr~~l~~l~~e 664 (1659)
..+.++.+++.+..+.+-
T Consensus 923 ~~~~i~alk~~l~dL~q~ 940 (970)
T KOG0946|consen 923 QKEKIQALKEALEDLNQP 940 (970)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 444444444444444433
No 126
>KOG1892|consensus
Probab=98.53 E-value=8.7e-07 Score=109.43 Aligned_cols=79 Identities=23% Similarity=0.475 Sum_probs=70.4
Q ss_pred EEEEeccCCCCcCeEe---------cCceEEEEeCCCChhhhcCCCCCCCEEEEeCCcccCCcccHHHHHHHHhcCCCeE
Q psy3835 814 TTQLQLNNSYDHGLTL---------ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 884 (1659)
Q Consensus 814 ~~~i~~~~~~~lG~~~---------~~gi~I~~v~~gs~A~~~g~L~~GD~Il~ing~~v~~~~~~~ea~~~l~~~~~~v 884 (1659)
...|+++..+|.|++| .-||||++|++|++|+.+|+|..||++|+|||.++.+ .+.+.|..++.+++..|
T Consensus 934 i~~vtL~KnnGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiG-isQErAA~lmtrtg~vV 1012 (1629)
T KOG1892|consen 934 IITVTLKKNNGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIG-ISQERAARLMTRTGNVV 1012 (1629)
T ss_pred eEEEEEeccCCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCccccc-ccHHHHHHHHhccCCeE
Confidence 4455555558899888 3589999999999999999999999999999999999 99999999999999999
Q ss_pred EEEEEccCC
Q psy3835 885 TITTLKPTS 893 (1659)
Q Consensus 885 ~l~v~r~~~ 893 (1659)
+|.|.....
T Consensus 1013 ~leVaKqgA 1021 (1629)
T KOG1892|consen 1013 HLEVAKQGA 1021 (1629)
T ss_pred EEehhhhhh
Confidence 999987654
No 127
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=98.53 E-value=0.0013 Score=77.78 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 295 QHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLEL 355 (1659)
Q Consensus 295 q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~l 355 (1659)
++..+.++|..+..+...+...+.........+..+...++.++.........|+.-+.++
T Consensus 23 K~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCREL 83 (309)
T PF09728_consen 23 KLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCREL 83 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444333344333333
No 128
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.53 E-value=4.1e-07 Score=83.18 Aligned_cols=67 Identities=45% Similarity=0.610 Sum_probs=59.2
Q ss_pred ccCeEEecCCCcceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCC-CeEEEEE
Q psy3835 1249 NLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPA-DKVTVLA 1315 (1659)
Q Consensus 1249 ~lGi~l~gg~~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~-~~v~L~v 1315 (1659)
++||.+.+....|++|..|.++|||+.+||++||+|++|||.++.++++.++...+.... ..+.|++
T Consensus 2 ~~G~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTEGGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 689999877656999999999999999999999999999999999999998888887654 6778766
No 129
>KOG3549|consensus
Probab=98.53 E-value=3.9e-07 Score=101.56 Aligned_cols=83 Identities=25% Similarity=0.328 Sum_probs=75.1
Q ss_pred CcceEEEEEeccCCCCcCeEecCc------eEEEEeCCCChhhhcCCCCCCCEEEEeCCcccCCcccHHHHHHHHhcCCC
Q psy3835 809 ARSLVTTQLQLNNSYDHGLTLESG------LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD 882 (1659)
Q Consensus 809 ~~~~~~~~i~~~~~~~lG~~~~~g------i~I~~v~~gs~A~~~g~L~~GD~Il~ing~~v~~~~~~~ea~~~l~~~~~ 882 (1659)
...-++++|....-+|||++|.+| ++|++|...-+|+..|.|-+||-|+.|||+.|+. ++|+|++.+|+++++
T Consensus 52 ~s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~-c~HeevV~iLRNAGd 130 (505)
T KOG3549|consen 52 ESKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTA-CPHEEVVNILRNAGD 130 (505)
T ss_pred cCCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeec-CChHHHHHHHHhcCC
Confidence 334467888878889999999766 7999999999999999999999999999999999 999999999999999
Q ss_pred eEEEEEEccC
Q psy3835 883 VLTITTLKPT 892 (1659)
Q Consensus 883 ~v~l~v~r~~ 892 (1659)
.|+|+|....
T Consensus 131 eVtlTV~~lr 140 (505)
T KOG3549|consen 131 EVTLTVKHLR 140 (505)
T ss_pred EEEEEeHhhh
Confidence 9999997654
No 130
>KOG3551|consensus
Probab=98.52 E-value=1.3e-07 Score=107.02 Aligned_cols=83 Identities=33% Similarity=0.482 Sum_probs=75.6
Q ss_pred CCeEEEEecCCcCccCeEEecC--CCcceEEEEeCCCChhhh-cCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCeEE
Q psy3835 1236 EPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT 1312 (1659)
Q Consensus 1236 ~~~~v~l~k~~~~~lGi~l~gg--~~~gi~V~~V~~gs~A~~-~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~ 1312 (1659)
..|.|.+.|....+|||+|.|| |..+|+|+.|.+|-+|++ ..|..||.||+|||.++.+.||++|++.|+++++.|.
T Consensus 84 ~~R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~ 163 (506)
T KOG3551|consen 84 AERRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVL 163 (506)
T ss_pred ccceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceee
Confidence 3477889998888999999998 446999999999999999 5699999999999999999999999999999999999
Q ss_pred EEEEeC
Q psy3835 1313 VLAQYS 1318 (1659)
Q Consensus 1313 L~v~r~ 1318 (1659)
|.|.+-
T Consensus 164 levKy~ 169 (506)
T KOG3551|consen 164 LEVKYM 169 (506)
T ss_pred eeeeee
Confidence 988754
No 131
>KOG3553|consensus
Probab=98.52 E-value=1.1e-07 Score=87.34 Aligned_cols=68 Identities=31% Similarity=0.430 Sum_probs=59.2
Q ss_pred CceEEEEec------------CCCcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEE
Q psy3835 1140 PLGIQIQCL------------DSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQ 1207 (1659)
Q Consensus 1140 ~lG~sl~~~------------~~~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~ 1207 (1659)
-+||.|.|| .+.|+||..|..||||+.+||+.+|.|++|||-++.-++|.+|+..++. ...+.++|.
T Consensus 36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k-~~vl~mLVa 114 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITK-EEVLRMLVA 114 (124)
T ss_pred EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhH-hHHHHHHHH
Confidence 379999998 2579999999999999999999999999999999999999999999987 444555554
Q ss_pred e
Q psy3835 1208 Y 1208 (1659)
Q Consensus 1208 r 1208 (1659)
|
T Consensus 115 R 115 (124)
T KOG3553|consen 115 R 115 (124)
T ss_pred h
Confidence 4
No 132
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=98.49 E-value=0.0037 Score=84.65 Aligned_cols=82 Identities=10% Similarity=0.099 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 322 AQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRSGCCTQPESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDD 401 (1659)
Q Consensus 322 ~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk~~~~~~e~~~~~~~~~~l~~~~~~le~~le~l~~e~~~l~~~~~e 401 (1659)
++.+..+.+.+.++..+...-.+..++.++++.++... ..........+++..+.....++..++++......+..+
T Consensus 58 ~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~---~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~ 134 (1109)
T PRK10929 58 EERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEP---RSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRARE 134 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc---ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 44445555666666666666666666666666544211 000111223555555666666666666665555555544
Q ss_pred HHHhh
Q psy3835 402 LINTH 406 (1659)
Q Consensus 402 l~~~l 406 (1659)
+...+
T Consensus 135 ~~~~l 139 (1109)
T PRK10929 135 ISDSL 139 (1109)
T ss_pred HHHHH
Confidence 33333
No 133
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=98.48 E-value=0.0053 Score=69.39 Aligned_cols=224 Identities=13% Similarity=0.163 Sum_probs=120.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Q psy3835 371 ADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEV-----------ARIKKQCEDMNQEKNTALR 439 (1659)
Q Consensus 371 ~~~l~~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel-----------~~lk~e~~~l~~~~~~l~~ 439 (1659)
+..+..+...+..+++..+...+.|..+++.....+..+....+.....- .+|-.-.+.+.-.+..+..
T Consensus 65 Ln~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd 144 (305)
T PF14915_consen 65 LNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKD 144 (305)
T ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHH
Confidence 33444444444444444444444444444444444443333333222222 2222222334444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 440 ERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERD 519 (1659)
Q Consensus 440 ei~~L~~el~~l~~~~~~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~ 519 (1659)
..+-|.+++...+.....++.++......+.+..--++.++.++...+.++.+++.-+..-+..+.....+.+.+++.+.
T Consensus 145 ~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~ 224 (305)
T PF14915_consen 145 NNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLS 224 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777777777777777666666666666667777666666666666665556666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3835 520 SVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQI-ETLKREIASALHDRDKALKECNDLRERFGEFTAA 594 (1659)
Q Consensus 520 ~l~~el~~L~~el~ele~ki~~le~el~~l~~e~~~l~~el-e~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~~ 594 (1659)
.++.+.--|.+++..+..+....+.-+.+.......+-..+ ....++.--+...|.+++.++..++++.-....+
T Consensus 225 QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qyEkE 300 (305)
T PF14915_consen 225 QLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYEKE 300 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666555443333333322222221111 1222233346667777888888888766655543
No 134
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.48 E-value=3.7e-07 Score=86.37 Aligned_cols=72 Identities=32% Similarity=0.397 Sum_probs=58.9
Q ss_pred ccCeEEecCCC-cceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCeEEEEEEeCcc
Q psy3835 1249 NLGISLVGGNA-VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVE 1320 (1659)
Q Consensus 1249 ~lGi~l~gg~~-~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~r~~~ 1320 (1659)
.||+.+..... .|++|..|.++|||+++||++||+|++|||.++.++........-...+..+.|+|.|+..
T Consensus 2 ~lGv~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 74 (82)
T PF13180_consen 2 GLGVTVQNLSDTGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTLTVLRDGE 74 (82)
T ss_dssp E-SEEEEECSCSSSEEEEEESTTSHHHHTTS-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEEEEEETTE
T ss_pred EECeEEEEccCCCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence 47888876543 6999999999999999999999999999999998877766554434688999999999854
No 135
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=98.47 E-value=0.0039 Score=75.35 Aligned_cols=80 Identities=13% Similarity=0.211 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 522 HKEMEKLSEDLTQAVRKIKTLEMENKEL---VEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAAKEEC 598 (1659)
Q Consensus 522 ~~el~~L~~el~ele~ki~~le~el~~l---~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~~~~e~ 598 (1659)
..-+.++......+..+++.+.....-. ..-....+++++.+...+..+......-..-|..+...++.+.+.....
T Consensus 315 ~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i 394 (570)
T COG4477 315 PDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDI 394 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444331111 1223455566666666655555555555555555555555555554444
Q ss_pred HHH
Q psy3835 599 QRE 601 (1659)
Q Consensus 599 q~e 601 (1659)
+.+
T Consensus 395 ~~~ 397 (570)
T COG4477 395 EDE 397 (570)
T ss_pred hhh
Confidence 443
No 136
>KOG0999|consensus
Probab=98.47 E-value=0.0041 Score=74.30 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=21.4
Q ss_pred HHHhhhhHhhhhhhhhhhH--HHHHHHHHHHHHHHHHHHHH
Q psy3835 627 EAASMDLFGKCQKERMDNL--EANQEIDRLRKHTDKLQAEL 665 (1659)
Q Consensus 627 ~~~~~~l~~~~~~~~~~~~--~~~~Ele~lr~~l~~l~~el 665 (1659)
+.....+..+++...+++. ....+++.|++++.+..++-
T Consensus 294 ~kl~~Dl~tel~~p~sDl~sel~iseiqkLkqqL~smErek 334 (772)
T KOG0999|consen 294 KKLASDLFTELQGPVSDLFSELNISEIQKLKQQLMSMEREK 334 (772)
T ss_pred hhccchhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555544444442 45566677777776665555
No 137
>KOG1892|consensus
Probab=98.45 E-value=1.6e-07 Score=115.67 Aligned_cols=66 Identities=23% Similarity=0.489 Sum_probs=63.4
Q ss_pred ccceEEEEeCCCCcccccCCcCCCcEEEEeCCcccCCCCCHHHHHHHhhcCCCeEEEEEecCCCcCC
Q psy3835 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKPTSLGE 272 (1659)
Q Consensus 206 ~~~~~v~~i~~g~~a~~dg~l~~gd~i~~in~~~~~~~~s~~e~~~~l~~~~~~~~i~~~k~~~~~~ 272 (1659)
.-||||+++++||+|+-||+|..||++|+|||.+|+|+ |.+.|..++..+|.++++-|.|--++|+
T Consensus 959 klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGi-sQErAA~lmtrtg~vV~leVaKqgAiyh 1024 (1629)
T KOG1892|consen 959 KLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGI-SQERAARLMTRTGNVVHLEVAKQGAIYH 1024 (1629)
T ss_pred ccceEEEEeccCCccccccccccCceeeeecCcccccc-cHHHHHHHHhccCCeEEEehhhhhhHHH
Confidence 56899999999999999999999999999999999999 6999999999999999999999988876
No 138
>KOG4593|consensus
Probab=98.44 E-value=0.015 Score=72.59 Aligned_cols=56 Identities=9% Similarity=0.000 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy3835 372 DSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQC 427 (1659)
Q Consensus 372 ~~l~~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~ 427 (1659)
....+.+.+++.++.++......+...+.+++.+....+.++..+...+..+++++
T Consensus 140 ~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~ 195 (716)
T KOG4593|consen 140 KKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKEL 195 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555444445555555555444444444444444444444433
No 139
>KOG0963|consensus
Probab=98.43 E-value=0.01 Score=73.20 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 555 TLSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAAKEECQREAFHAR 606 (1659)
Q Consensus 555 ~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~~~~e~q~e~~~~~ 606 (1659)
.+.++++....+|..+...+...+.++++++++++.. .+.++.+++..-++
T Consensus 307 S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 307 SLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHH
Confidence 3455556666666666667777777777766666555 33455555543333
No 140
>PRK11637 AmiB activator; Provisional
Probab=98.42 E-value=0.00022 Score=89.35 Aligned_cols=11 Identities=9% Similarity=0.341 Sum_probs=6.5
Q ss_pred CCCCCEEEEeC
Q psy3835 850 LAVGDRVLSIN 860 (1659)
Q Consensus 850 L~~GD~Il~in 860 (1659)
+..||.|-.|.
T Consensus 389 V~~G~~ig~~g 399 (428)
T PRK11637 389 VRAGQPIALVG 399 (428)
T ss_pred ECCCCeEEeec
Confidence 45666666554
No 141
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=98.41 E-value=0.00096 Score=85.09 Aligned_cols=99 Identities=11% Similarity=0.149 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchHHHHHH
Q psy3835 298 ETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRSGCCTQPESDDAGSADSLNQH 377 (1659)
Q Consensus 298 E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk~~~~~~e~~~~~~~~~~l~~~ 377 (1659)
+..+.+++++++++.+...+.++...+..+...+..+..+..+...+..+++.++.-.+. +... +.+...++..++..
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k-~~~l-L~d~e~ni~kL~~~ 402 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKK-TVEL-LPDAEENIAKLQAL 402 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-hcCcHHHHHHHHHH
Confidence 333444444444444444444444444444444444444555555555555554443332 0000 12223344555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3835 378 YMSALNKYETIKDEYDALRKR 398 (1659)
Q Consensus 378 ~~~le~~le~l~~e~~~l~~~ 398 (1659)
++....++..|..+++..+..
T Consensus 403 v~~s~~rl~~L~~qWe~~R~p 423 (594)
T PF05667_consen 403 VEASEQRLVELAQQWEKHRAP 423 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhH
Confidence 666666666666666554443
No 142
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=98.41 E-value=0.0074 Score=71.50 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 291 LYVRQHNETVRRGDHTLKELEYYRGQH 317 (1659)
Q Consensus 291 ~L~~q~~E~~~rl~~le~El~~l~~~l 317 (1659)
.|..++.+.......+++++..++...
T Consensus 26 ~L~kk~~ell~e~k~~~k~~~~~~Kk~ 52 (309)
T PF09728_consen 26 ALCKKYAELLEEMKRLQKQLKKLQKKQ 52 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 143
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=98.40 E-value=0.00073 Score=86.13 Aligned_cols=59 Identities=15% Similarity=0.268 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 377 HYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKN 435 (1659)
Q Consensus 377 ~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~ 435 (1659)
.....+.+++.++++++.+..++..+..+++.+...+.++.+++.+.+.+..+++++..
T Consensus 322 ~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 322 EQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666666666555555555555555555555555555444444433
No 144
>KOG0978|consensus
Probab=98.39 E-value=0.023 Score=72.42 Aligned_cols=17 Identities=24% Similarity=0.690 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3835 646 EANQEIDRLRKHTDKLQ 662 (1659)
Q Consensus 646 ~~~~Ele~lr~~l~~l~ 662 (1659)
+++.|++.++.++...+
T Consensus 605 rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 605 RLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34444444444444433
No 145
>KOG0962|consensus
Probab=98.39 E-value=0.0092 Score=79.91 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=18.4
Q ss_pred hhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3835 630 SMDLFGKCQKERMDNLEANQEIDRLRKHTDKLQAEL 665 (1659)
Q Consensus 630 ~~~l~~~~~~~~~~~~~~~~Ele~lr~~l~~l~~el 665 (1659)
..-|..++++.-+....+..+..++..++...+++|
T Consensus 1043 ~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL 1078 (1294)
T KOG0962|consen 1043 RVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQEL 1078 (1294)
T ss_pred HHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444445555555555555555555
No 146
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=98.37 E-value=0.022 Score=71.29 Aligned_cols=11 Identities=18% Similarity=0.256 Sum_probs=5.8
Q ss_pred cCCCCCCCCCC
Q psy3835 82 VGGRDDPFYPN 92 (1659)
Q Consensus 82 ~~g~~~p~~~~ 92 (1659)
+|..+.|.--|
T Consensus 40 ~~~~~~p~~r~ 50 (739)
T PF07111_consen 40 SGDGQEPGRRG 50 (739)
T ss_pred cccccCccccc
Confidence 35556665543
No 147
>KOG0980|consensus
Probab=98.37 E-value=0.003 Score=79.93 Aligned_cols=124 Identities=15% Similarity=0.230 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 378 YMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDI 457 (1659)
Q Consensus 378 ~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~ 457 (1659)
+++.+.+....+++++.++..+.++..++..+..+......++...+..+.+++++...+...+++++.+...++...+.
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~ 491 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTES 491 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34444444444455555555555555554444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 458 ALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLT 501 (1659)
Q Consensus 458 l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelk 501 (1659)
..+.++.++.++..+..+++.++..+..+.+.......+++.+.
T Consensus 492 ~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l 535 (980)
T KOG0980|consen 492 QAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLL 535 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 44444455554444444444444444444433333333333333
No 148
>PRK11281 hypothetical protein; Provisional
Probab=98.37 E-value=0.0098 Score=81.08 Aligned_cols=106 Identities=12% Similarity=0.197 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 322 AQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRSGCCTQP-ESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRFD 400 (1659)
Q Consensus 322 ~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk~~~~~~e-~~~~~~~~~~l~~~~~~le~~le~l~~e~~~l~~~~~ 400 (1659)
++.+..+++.+.++.++.+...+..+..++++.+++...... ..........++..+.+.++.+++.+++...+.+++.
T Consensus 73 ~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi 152 (1113)
T PRK11281 73 DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLV 152 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666666677777777777776663111110 0011222344566666666666666666666666666
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy3835 401 DLINTHSTAVDKLELAQEEVARIKKQC 427 (1659)
Q Consensus 401 el~~~l~~~~~~le~leeel~~lk~e~ 427 (1659)
.++..-+.....+......+++++.++
T Consensus 153 ~~qT~PERAQ~~lsea~~RlqeI~~~L 179 (1113)
T PRK11281 153 SLQTQPERAQAALYANSQRLQQIRNLL 179 (1113)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 666655555555555555555555444
No 149
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.36 E-value=0.00031 Score=91.13 Aligned_cols=58 Identities=10% Similarity=0.290 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 381 ALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTAL 438 (1659)
Q Consensus 381 le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~ 438 (1659)
+..++.+++.+.+.|+.++..|.......+..+..+|..+.+.+.....+++++..-+
T Consensus 458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666665555555566666665555555555554444433
No 150
>KOG0980|consensus
Probab=98.35 E-value=0.0014 Score=82.84 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=9.5
Q ss_pred CCeEEEEEecCCCcCCCCC
Q psy3835 257 PDVLTITTLKPTSLGEHSP 275 (1659)
Q Consensus 257 ~~~~~i~~~k~~~~~~~~~ 275 (1659)
+....|....|.....+++
T Consensus 308 ~~~~~~~~~~~~~~~~~~s 326 (980)
T KOG0980|consen 308 PEPLDLFEAEPASDPPNAS 326 (980)
T ss_pred CCCccccccCcccCCcccc
Confidence 4445555555555444443
No 151
>KOG1421|consensus
Probab=98.35 E-value=0.00021 Score=87.12 Aligned_cols=127 Identities=14% Similarity=0.174 Sum_probs=85.0
Q ss_pred cccccC---CCCCCCCCCEEEEECCEeCCCCChHHHHHHHHh-cCCeEEEEEEeCCCCCcceEEEEEec-cC--C-----
Q psy3835 755 LSALLN---NPPSYKVNDCIVRVNNLDCSNVSKRMVLETVRS-SGTSALMVIRRRRVGARSLVTTQLQL-NN--S----- 822 (1659)
Q Consensus 755 V~~v~p---~~g~l~~GD~Il~VNg~~~~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~~~~~~~~i~~-~~--~----- 822 (1659)
|..+.| ++..|++||.+++||+..+.+. ..+.++|.. .|..+.|+|.|.+..... ++.+.. .+ +
T Consensus 307 V~~vL~~gpa~k~Le~GDillavN~t~l~df--~~l~~iLDegvgk~l~LtI~Rggqelel--~vtvqdlh~itp~R~le 382 (955)
T KOG1421|consen 307 VETVLPEGPAEKKLEPGDILLAVNSTCLNDF--EALEQILDEGVGKNLELTIQRGGQELEL--TVTVQDLHGITPDRFLE 382 (955)
T ss_pred EEEeccCCchhhccCCCcEEEEEcceehHHH--HHHHHHHhhccCceEEEEEEeCCEEEEE--EEEeccccCCCCceEEE
Confidence 666666 8889999999999998877765 455566655 688999999998642211 111110 00 0
Q ss_pred -------------CCcCeEecCceEEEEeCCCChhhhcCCCCCCCEEEEeCCcccCCcccHHHHHHHHhcCC--CeEEEE
Q psy3835 823 -------------YDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP--DVLTIT 887 (1659)
Q Consensus 823 -------------~~lG~~~~~gi~I~~v~~gs~A~~~g~L~~GD~Il~ing~~v~~~~~~~ea~~~l~~~~--~~v~l~ 887 (1659)
..+++-...|+||.+-- |+++.+- .+. |-.|.+|||.++.+ ++..+..++.-+ ..|.+.
T Consensus 383 vcGav~hdlsyq~ar~y~lP~~GvyVa~~~-gsf~~~~-~~y-~~ii~~vanK~tPd---LdaFidvlk~L~dg~rV~vr 456 (955)
T KOG1421|consen 383 VCGAVFHDLSYQLARLYALPVEGVYVASPG-GSFRHRG-PRY-GQIIDSVANKPTPD---LDAFIDVLKELPDGARVPVR 456 (955)
T ss_pred EcceEecCCCHHHHhhcccccCcEEEccCC-CCccccC-Ccc-eEEEEeecCCcCCC---HHHHHHHHHhccCCCeeeEE
Confidence 01222223599999877 8888854 466 89999999999999 666677777655 455554
Q ss_pred EEcc
Q psy3835 888 TLKP 891 (1659)
Q Consensus 888 v~r~ 891 (1659)
..+.
T Consensus 457 y~hl 460 (955)
T KOG1421|consen 457 YHHL 460 (955)
T ss_pred EEEe
Confidence 4443
No 152
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=98.33 E-value=0.0082 Score=67.93 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=45.1
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3835 284 SSTQTMPLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRS 357 (1659)
Q Consensus 284 ~~~~Ele~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk~ 357 (1659)
.+..+++-++++..++++.++.-+.- +...+.....+|..|..+...+..++..-+...++|+.+++....
T Consensus 28 ky~ediei~Kekn~~Lqk~lKLneE~---ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rs 98 (305)
T PF14915_consen 28 KYLEDIEILKEKNDDLQKSLKLNEET---LTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRS 98 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHH---HHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Confidence 44455555555555555554443333 233444556777777777778887877777778888888887763
No 153
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.32 E-value=0.00038 Score=90.37 Aligned_cols=70 Identities=10% Similarity=0.197 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 380 SALNKYETIKDEYDALRKRFDDLINT-------HSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCT 449 (1659)
Q Consensus 380 ~le~~le~l~~e~~~l~~~~~el~~~-------l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~ 449 (1659)
.++.++++|+.++...+..-.+|... -..++.++..++.+...++.++..+...+..-.+.+..|++++.
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~ 498 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA 498 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433333333333 33333344444444444444444333333333333333333333
No 154
>KOG0963|consensus
Probab=98.31 E-value=0.0085 Score=73.93 Aligned_cols=14 Identities=0% Similarity=0.354 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q psy3835 579 KECNDLRERFGEFT 592 (1659)
Q Consensus 579 eE~e~l~er~~e~~ 592 (1659)
..|++++..+.-+.
T Consensus 344 sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 344 SDYEEIKKELSILK 357 (629)
T ss_pred ccHHHHHHHHHHHH
Confidence 44555555444443
No 155
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=98.31 E-value=0.016 Score=68.39 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 382 LNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCT 449 (1659)
Q Consensus 382 e~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~ 449 (1659)
.+.++.+.+.+..++.....++.-.+.++.+.+..-..+.+++.++...++++..++..+..|..++.
T Consensus 294 s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 294 SQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLR 361 (622)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34444445555555555555555444555444444444555555555555555555554444444443
No 156
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.29 E-value=3.3e-06 Score=80.48 Aligned_cols=70 Identities=19% Similarity=0.424 Sum_probs=61.1
Q ss_pred CCceEEEEecCCCcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHh-CCCeEEEEEEec
Q psy3835 1139 EPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQ-CGNSITMLVQYS 1209 (1659)
Q Consensus 1139 ~~lG~sl~~~~~~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~ 1209 (1659)
.+||+.+... ..+++|..|.+++||+++||++||.|++|||.++.++++.++...++. .+..+.|.+.|+
T Consensus 2 ~~lG~~~~~~-~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 2 GGIGLELKYD-DGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred eEEEEEEEEc-CCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 4688888754 578999999999999999999999999999999999988888887765 467899999876
No 157
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=98.28 E-value=0.0025 Score=73.15 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 436 TALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDA 479 (1659)
Q Consensus 436 ~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~el~~eieel 479 (1659)
...+++..+.++...+..++..+..+..+++.+...+..+-.+|
T Consensus 134 kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~L 177 (499)
T COG4372 134 KAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQL 177 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333
No 158
>KOG3571|consensus
Probab=98.26 E-value=1.1e-06 Score=103.16 Aligned_cols=73 Identities=22% Similarity=0.433 Sum_probs=62.7
Q ss_pred eecccCCCCCcccccceEEEEeCCCCcccccCCcCCCcEEEEeCCcccCCCCCHHHHHHHhhcC---CCeEEEEEec
Q psy3835 193 LQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDS---PDVLTITTLK 266 (1659)
Q Consensus 193 l~~~~~~~~g~~~~~~~~v~~i~~g~~a~~dg~l~~gd~i~~in~~~~~~~~s~~e~~~~l~~~---~~~~~i~~~k 266 (1659)
|++++.|...-..+.||||.+|.+||+.|.|||+-+||.||.||.++.+|| |-++|+..|++. ..-++|||+|
T Consensus 263 LGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENm-SNd~AVrvLREaV~~~gPi~ltvAk 338 (626)
T KOG3571|consen 263 LGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENM-SNDQAVRVLREAVSRPGPIKLTVAK 338 (626)
T ss_pred ceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhc-CchHHHHHHHHHhccCCCeEEEEee
Confidence 555665555556689999999999999999999999999999999999999 699999999982 4557788775
No 159
>KOG1003|consensus
Probab=98.24 E-value=0.0015 Score=68.93 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 449 TAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKL 528 (1659)
Q Consensus 449 ~~l~~~~~~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L 528 (1659)
+.++.+.......++.++.++++.+.--++...++++...++.-.+.+|+...+......+.+..+..+...+...+..+
T Consensus 49 Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l 128 (205)
T KOG1003|consen 49 KVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSL 128 (205)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 33334444444444444445554444444444445555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 529 SEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAAK 595 (1659)
Q Consensus 529 ~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~~~ 595 (1659)
...-..+..+...++.+++.+...+.+....-+.+.+....|....+.+...+...+.+|..+...+
T Consensus 129 ~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eL 195 (205)
T KOG1003|consen 129 SAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKEL 195 (205)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHH
Confidence 5555555555555555555555555544444555555555555555555555665566555555543
No 160
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=98.24 E-value=0.012 Score=69.47 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3835 328 AQESSSLRSKYSDLISDKQRLDRELLELR 356 (1659)
Q Consensus 328 k~e~~~l~~e~~el~~e~~~Le~el~~lk 356 (1659)
.+.++.++.+++.++.....++.-...++
T Consensus 294 s~~i~~l~ek~r~l~~D~nk~~~~~~~mk 322 (622)
T COG5185 294 SQKIKTLREKWRALKSDSNKYENYVNAMK 322 (622)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444455555555555444444444443
No 161
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.24 E-value=0.0037 Score=82.73 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3835 316 QHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELR 356 (1659)
Q Consensus 316 ~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk 356 (1659)
.+.++..++..+..+.+.+..++..+..+++.++.++..++
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~ 250 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLE 250 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444333
No 162
>KOG3571|consensus
Probab=98.22 E-value=1.8e-06 Score=101.19 Aligned_cols=84 Identities=26% Similarity=0.465 Sum_probs=63.9
Q ss_pred cCCCCCccCCCcceeEEEEEeccCCCCCCccCeeecCCCCCCCCCCCccEEEEeeccCC--ccCCcccccceeeeeccc-
Q psy3835 47 SHDSAIDTDLQEWDTEVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGS--VTDGKLKKKEEVARIKKQ- 123 (1659)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~p~~~~d~~i~v~~v~~g~--~a~g~l~~~d~i~~vn~~- 123 (1659)
|-=|.|-.-+|--+.-+|.+++ +.-+ =|||+|+|-.++ -||.||||..|.||| ++|||+-+||.||+||+|
T Consensus 236 SSfSSiTdSsmslnIITV~LnM--e~vn-fLGiSivgqsn~---rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevs 309 (626)
T KOG3571|consen 236 SSFSSITDSSMSLNIITVTLNM--ETVN-FLGISIVGQSNA---RGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVS 309 (626)
T ss_pred cccccccccccceeEEEEEecc--cccc-cceeEeecccCc---CCCCceEEeeeccCceeeccCccCccceEEEeeecc
Confidence 4445565556665555555544 3322 599999997665 589999999999999 899999999999999999
Q ss_pred cchhhhh-HHHHHH
Q psy3835 124 CEDMNQE-KNTALR 136 (1659)
Q Consensus 124 ~~~~~~~-~~~~~~ 136 (1659)
+++++-+ ||..|+
T Consensus 310 FENmSNd~AVrvLR 323 (626)
T KOG3571|consen 310 FENMSNDQAVRVLR 323 (626)
T ss_pred hhhcCchHHHHHHH
Confidence 8888776 764433
No 163
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=98.21 E-value=0.0027 Score=72.92 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=6.8
Q ss_pred HHHhcCCeEEEEEEe
Q psy3835 790 TVRSSGTSALMVIRR 804 (1659)
Q Consensus 790 ~l~~~~~~v~l~v~R 804 (1659)
+|+++..+..|.+.|
T Consensus 321 ll~~AnR~aal~l~~ 335 (499)
T COG4372 321 LLSSANRPAALRLRR 335 (499)
T ss_pred HHHhcCCCcceeeec
Confidence 344444444444444
No 164
>KOG0962|consensus
Probab=98.20 E-value=0.021 Score=76.64 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 478 DAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSE 517 (1659)
Q Consensus 478 ele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e 517 (1659)
++++++..+..++..+.+.+..++..+.++.+++.+++.+
T Consensus 889 ~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~ 928 (1294)
T KOG0962|consen 889 ELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNE 928 (1294)
T ss_pred HHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444444444444333
No 165
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=98.16 E-value=3.8e-07 Score=120.93 Aligned_cols=37 Identities=35% Similarity=0.458 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHH
Q psy3835 531 DLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREI 567 (1659)
Q Consensus 531 el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei 567 (1659)
.+..+......++.+.......+..++.+++.+.+.+
T Consensus 489 ~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l 525 (713)
T PF05622_consen 489 QLEDANRRKEKLEEENREANEKILELQSQLEELQKSL 525 (713)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333444444444333
No 166
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=98.13 E-value=0.052 Score=66.04 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy3835 558 YQIETLKREIASALHDRDKALKECNDLRER 587 (1659)
Q Consensus 558 ~ele~Lk~ei~~l~~~~~~aieE~e~l~er 587 (1659)
++...+...+..+.++-.+|.+.+..++.+
T Consensus 396 ~~q~~~~e~L~~LrkdEl~Are~l~~~~~~ 425 (570)
T COG4477 396 DEQEKVQEHLTSLRKDELEARENLERLKSK 425 (570)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333433444444444444433
No 167
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=98.13 E-value=0.0098 Score=80.74 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=18.2
Q ss_pred ccCCcEEEEecCCCCCCC--CcEEEEEecc-CCCcccccCcCChhHH
Q psy3835 1353 FHKDDILYVDNTMFNGVP--GHWRAWLVDA-DGFRQQCGIIPSKYKV 1396 (1659)
Q Consensus 1353 f~~gdil~v~~t~~~~~~--~~W~a~~v~~-~~~~~~~GlIPs~~~~ 1396 (1659)
|+.||.+.|-+. .|.. --|.++++-. +| ..=+|||..+.
T Consensus 936 frVGD~I~I~~~--~GtV~~I~lRsT~Irt~Dg---~~IiIPNs~~i 977 (1109)
T PRK10929 936 IRIGDTVTIRDL--TGSVTKINTRATTISDWDR---KEIIVPNKAFI 977 (1109)
T ss_pred CCCCCEEEECCE--EEEEEEEeeeEEEEEeCCC---CEEEEEChhhh
Confidence 566666665432 1211 1244555422 32 35567776543
No 168
>KOG3651|consensus
Probab=98.12 E-value=5.6e-06 Score=91.05 Aligned_cols=77 Identities=26% Similarity=0.406 Sum_probs=68.1
Q ss_pred EEEEeccCCCCcCeEecCc------eEEEEeCCCChhhhcCCCCCCCEEEEeCCcccCCcccHHHHHHHHhcCCCeEEEE
Q psy3835 814 TTQLQLNNSYDHGLTLESG------LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887 (1659)
Q Consensus 814 ~~~i~~~~~~~lG~~~~~g------i~I~~v~~gs~A~~~g~L~~GD~Il~ing~~v~~~~~~~ea~~~l~~~~~~v~l~ 887 (1659)
.++++....+-.||+|.+| +||.+|..++||+++|+++.||.|++|||++|.+ .+-.++.++|+-+.+.|.++
T Consensus 7 ~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKG-ktKveVAkmIQ~~~~eV~Ih 85 (429)
T KOG3651|consen 7 TVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKG-KTKVEVAKMIQVSLNEVKIH 85 (429)
T ss_pred cEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecC-ccHHHHHHHHHHhccceEEE
Confidence 4555555667799999766 6999999999999999999999999999999999 99999999999999999997
Q ss_pred EEcc
Q psy3835 888 TLKP 891 (1659)
Q Consensus 888 v~r~ 891 (1659)
+..-
T Consensus 86 yNKL 89 (429)
T KOG3651|consen 86 YNKL 89 (429)
T ss_pred ehhc
Confidence 7554
No 169
>PRK11281 hypothetical protein; Provisional
Probab=98.08 E-value=0.046 Score=74.80 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=20.8
Q ss_pred ccCCcEEEEecCCCCCCC--CcEEEEEec-cCCCcccccCcCChhHH
Q psy3835 1353 FHKDDILYVDNTMFNGVP--GHWRAWLVD-ADGFRQQCGIIPSKYKV 1396 (1659)
Q Consensus 1353 f~~gdil~v~~t~~~~~~--~~W~a~~v~-~~~~~~~~GlIPs~~~~ 1396 (1659)
|+-||.+.|-+. .|.. --|.++++- .+| ..=+|||..+.
T Consensus 939 frIGD~I~I~~~--~G~V~~I~lRsT~Irt~D~---~~ViIPNs~~~ 980 (1113)
T PRK11281 939 VRIGDTVTIGTF--SGTVSKIRIRATTITDFDR---KEVIVPNKAFV 980 (1113)
T ss_pred cCCCCEEEECCE--EEEEEEEEeEEEEEEcCCC---CEEEEechhhh
Confidence 666666666442 2221 135666663 233 36678887654
No 170
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.08 E-value=1.9e-06 Score=114.62 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy3835 651 IDRLRKHTDKLQAEL 665 (1659)
Q Consensus 651 le~lr~~l~~l~~el 665 (1659)
+..|+.++..++.++
T Consensus 505 ~~~L~~~~~~Le~e~ 519 (722)
T PF05557_consen 505 LNELQKEIEELEREN 519 (722)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444443333
No 171
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.08 E-value=0.0095 Score=71.49 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHH
Q psy3835 557 SYQIETLKREIASALHDRDKAL 578 (1659)
Q Consensus 557 ~~ele~Lk~ei~~l~~~~~~ai 578 (1659)
+++++.|+.+-..+..+...++
T Consensus 223 q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 223 QKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 3344444444444443333333
No 172
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.08 E-value=1.4e-05 Score=76.21 Aligned_cols=69 Identities=25% Similarity=0.372 Sum_probs=58.5
Q ss_pred ccCeEEecCCCcceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcC-CCCeEEEEEEeC
Q psy3835 1249 NLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK-PADKVTVLAQYS 1318 (1659)
Q Consensus 1249 ~lGi~l~gg~~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~-~~~~v~L~v~r~ 1318 (1659)
+||+.+... ..+++|..|.++|||+++||++||+|++|||.++.++++.+....+.. .+..+.|.+.|+
T Consensus 3 ~lG~~~~~~-~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 3 GIGLELKYD-DGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred EEEEEEEEc-CCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 578887643 468999999999999999999999999999999999977777776654 467888998876
No 173
>KOG1003|consensus
Probab=98.06 E-value=0.0064 Score=64.37 Aligned_cols=91 Identities=14% Similarity=0.168 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy3835 504 RNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECND 583 (1659)
Q Consensus 504 ~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~ 583 (1659)
..++..++..+...+..+...-+.+.++...++.++..+..++.+....-+.....+..|..++..+...+.....+|..
T Consensus 111 ~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~ 190 (205)
T KOG1003|consen 111 SEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEE 190 (205)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHH
Confidence 33333444444445555555555566666666666666666777776667777788888888888888888888888888
Q ss_pred HHHHHHHHHHH
Q psy3835 584 LRERFGEFTAA 594 (1659)
Q Consensus 584 l~er~~e~~~~ 594 (1659)
+...+.+....
T Consensus 191 ~~~eLD~~~~~ 201 (205)
T KOG1003|consen 191 AKKELDETLQE 201 (205)
T ss_pred HHHHHHHHHHH
Confidence 88777766554
No 174
>KOG0979|consensus
Probab=98.04 E-value=0.12 Score=67.09 Aligned_cols=105 Identities=10% Similarity=0.116 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 371 ADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTA 450 (1659)
Q Consensus 371 ~~~l~~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~ 450 (1659)
+..+.+..+.+..++..+.++...+....++++.+.....+++.....++.+......+....+.....++..+..++..
T Consensus 250 y~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~ 329 (1072)
T KOG0979|consen 250 YNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLES 329 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444333334444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 451 AIRQWDIALRERNEYQEALAKVQQQ 475 (1659)
Q Consensus 451 l~~~~~~l~~el~~l~~~l~el~~e 475 (1659)
+..+-+..+..+....+.+.+++.+
T Consensus 330 lk~~~~~rq~~i~~~~k~i~~~q~e 354 (1072)
T KOG0979|consen 330 LKKAAEKRQKRIEKAKKMILDAQAE 354 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444444444444444333
No 175
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=98.04 E-value=9.3e-07 Score=117.29 Aligned_cols=56 Identities=18% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 390 DEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLK 445 (1659)
Q Consensus 390 ~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~ 445 (1659)
.++..+++++.+++..+.....+.+.++.++..++.++..+..+...+..++..|+
T Consensus 363 ~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~ 418 (713)
T PF05622_consen 363 SQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLR 418 (713)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444333333
No 176
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=98.03 E-value=0.003 Score=72.67 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3835 301 RRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELR 356 (1659)
Q Consensus 301 ~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk 356 (1659)
.-+++.+++|......-+.+..+-..+..+...+...+......+..|..++....
T Consensus 69 ~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kd 124 (306)
T PF04849_consen 69 RLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKD 124 (306)
T ss_pred HHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555556666666666666677666666666666666665443
No 177
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=98.02 E-value=0.0059 Score=70.38 Aligned_cols=91 Identities=19% Similarity=0.256 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3835 515 MSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAA 594 (1659)
Q Consensus 515 ~~e~~~l~~el~~L~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~~ 594 (1659)
...+..+..++....++......+|..|..++.++....+.+-.+-+.|...+.........+..|+.++++||.+...-
T Consensus 212 n~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~m 291 (306)
T PF04849_consen 212 NQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAM 291 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444455555555666666666566666777888888888888887
Q ss_pred HHHHHHHHHHH
Q psy3835 595 KEECQREAFHA 605 (1659)
Q Consensus 595 ~~e~q~e~~~~ 605 (1659)
+.+.|.+++.+
T Consensus 292 L~EaQEElk~l 302 (306)
T PF04849_consen 292 LHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHh
Confidence 77777774444
No 178
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.01 E-value=3.2e-06 Score=112.46 Aligned_cols=17 Identities=35% Similarity=0.755 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3835 649 QEIDRLRKHTDKLQAEL 665 (1659)
Q Consensus 649 ~Ele~lr~~l~~l~~el 665 (1659)
.++..|..++..++.++
T Consensus 510 ~~~~~Le~e~~~L~~~~ 526 (722)
T PF05557_consen 510 KEIEELERENERLRQEL 526 (722)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 179
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=98.00 E-value=0.0077 Score=64.19 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3835 321 MAQLEAAAQESSSLRSKYSDL 341 (1659)
Q Consensus 321 ~~~l~~lk~e~~~l~~e~~el 341 (1659)
...+++|+..-..+..++..+
T Consensus 7 ~~~v~dL~~~n~~L~~en~kL 27 (193)
T PF14662_consen 7 LSCVEDLQLNNQKLADENAKL 27 (193)
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 334444444433444333333
No 180
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.99 E-value=0.064 Score=61.85 Aligned_cols=46 Identities=11% Similarity=0.080 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 290 PLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLR 335 (1659)
Q Consensus 290 e~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~ 335 (1659)
+.|...+..+.+....++.++..++.....+...+..++.....+.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~ 68 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQ 68 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777776666666555555555555544444
No 181
>KOG3552|consensus
Probab=97.99 E-value=5.9e-06 Score=102.67 Aligned_cols=76 Identities=22% Similarity=0.381 Sum_probs=67.6
Q ss_pred EEEEeccCCCCcCeEecCceEEEEeCCCChhhhcCCCCCCCEEEEeCCcccCCcccHHHHHHHHhcCCCeEEEEEEccC
Q psy3835 814 TTQLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKPT 892 (1659)
Q Consensus 814 ~~~i~~~~~~~lG~~~~~gi~I~~v~~gs~A~~~g~L~~GD~Il~ing~~v~~~~~~~ea~~~l~~~~~~v~l~v~r~~ 892 (1659)
.+++..+...||||.-.-+++|..|++|||+. |.|+|||+|++|||.+|.+ .+++.|+++++.+...|.|+|+++.
T Consensus 58 ~vq~~r~~~lGFgfvagrPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~d-aprervIdlvRace~sv~ltV~qPc 133 (1298)
T KOG3552|consen 58 QVQLQRNASLGFGFVAGRPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKD-APRERVIDLVRACESSVNLTVCQPC 133 (1298)
T ss_pred hhhhhccccccceeecCCceEEEEecCCCCcc--ccccCCCeEEEecCccccc-ccHHHHHHHHHHHhhhcceEEeccc
Confidence 34444456677778777889999999999998 8899999999999999999 9999999999999999999999984
No 182
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.99 E-value=1.8e-05 Score=74.29 Aligned_cols=60 Identities=25% Similarity=0.262 Sum_probs=50.4
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHh--CCCeEEEEEEecCC
Q psy3835 1150 SGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQ--CGNSITMLVQYSPD 1211 (1659)
Q Consensus 1150 ~~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 1211 (1659)
..|++|..|.++|||+++||++||.|++|||.++.++. +....+.. .+..+.|.+.|++.
T Consensus 9 ~~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~~~--d~~~~l~~~~~g~~v~l~v~r~g~ 70 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITTLE--DFMEALKPTKPGEVITVTVLPSTT 70 (79)
T ss_pred CCcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCCHH--HHHHHHhcCCCCCEEEEEEEECCE
Confidence 45899999999999999999999999999999999764 44555554 37789999998765
No 183
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.98 E-value=0.27 Score=68.69 Aligned_cols=12 Identities=8% Similarity=0.172 Sum_probs=6.4
Q ss_pred ccHHHHHHHHhc
Q psy3835 868 SSAREGMALLSD 879 (1659)
Q Consensus 868 ~~~~ea~~~l~~ 879 (1659)
.+...++.+|..
T Consensus 991 ~~~~~~~~~l~~ 1002 (1047)
T PRK10246 991 ETLDTALDALDA 1002 (1047)
T ss_pred HHHHHHHHHHHH
Confidence 445555555554
No 184
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.98 E-value=0.011 Score=63.10 Aligned_cols=10 Identities=40% Similarity=0.524 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q psy3835 523 KEMEKLSEDL 532 (1659)
Q Consensus 523 ~el~~L~~el 532 (1659)
.++.+|++.+
T Consensus 179 ~e~s~LEeql 188 (193)
T PF14662_consen 179 LEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHH
Confidence 3333343333
No 185
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.96 E-value=2.1e-05 Score=73.75 Aligned_cols=61 Identities=31% Similarity=0.341 Sum_probs=49.0
Q ss_pred cceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCeEEEEEEeCcc
Q psy3835 1260 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVE 1320 (1659)
Q Consensus 1260 ~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~r~~~ 1320 (1659)
.|++|..|.++|||+++||++||+|++|||.++.++........-...+..+.|.+.|+..
T Consensus 10 ~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~~~d~~~~l~~~~~g~~v~l~v~r~g~ 70 (79)
T cd00991 10 AGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITTLEDFMEALKPTKPGEVITVTVLPSTT 70 (79)
T ss_pred CcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCCHHHHHHHHhcCCCCCEEEEEEEECCE
Confidence 5899999999999999999999999999999999776543332211246789999988753
No 186
>KOG1937|consensus
Probab=97.94 E-value=0.094 Score=62.16 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=18.3
Q ss_pred ccCeeecCCCCCCCCCCCccE
Q psy3835 76 ALGLELVGGRDDPFYPNDSSI 96 (1659)
Q Consensus 76 ~~g~~~~~g~~~p~~~~d~~i 96 (1659)
+||-+||-|.-|=+|+||.|.
T Consensus 65 rla~siAq~ckdlgyrgD~gy 85 (521)
T KOG1937|consen 65 RLANSIAQYCKDLGYRGDTGY 85 (521)
T ss_pred HHHHHHHHHHHHcCCCcccch
Confidence 677789999999999999976
No 187
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.93 E-value=2.6e-05 Score=85.42 Aligned_cols=150 Identities=14% Similarity=0.049 Sum_probs=91.9
Q ss_pred CCcEEEECCCh---HHHHHHHhhhCCCcccccccceecCChHHHHHhcc-----------CCc-eEEEEE-eCCeeeeec
Q psy3835 1474 LRPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMHCPQAAMEKGLA-----------DNL-FVDYRK-KGAYFECTS 1537 (1659)
Q Consensus 1474 ~RpvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttrvs~~~f~~~i~-----------~~~-flE~~~-~~g~~YGts 1537 (1659)
.+.|||+||+| +|+.+.|.+..+..|. +++.+.|..++. .+. +.+|.+ +.+++|++.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~-------~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 74 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWL-------HFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAW 74 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCcc-------ccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHH
Confidence 36789999998 9999999887654332 223333333322 111 233332 455789999
Q ss_pred HHHHHHHHHcCCCeEEEEcChhHHHHHH----hc-CCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHH
Q psy3835 1538 VAAVKDACDKNNAHVILDVSLAGVERLH----RQ-HVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEH 1612 (1659)
Q Consensus 1538 ~~~V~~v~~~~gk~~iLdi~~~~~~~l~----~~-~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 1612 (1659)
...+...+++ |++||+|....+...++ .. ....++||+.+| .+++.+|+. .| +.. ... +..
T Consensus 75 ~~~~~~~l~~-G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~-~~~l~~R~~---~R----~~~----~~~-~~~ 140 (175)
T cd00227 75 YEAVAAMARA-GANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCP-GEVAEGRET---AR----GDR----VPG-QAR 140 (175)
T ss_pred HHHHHHHHhC-CCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECC-HHHHHHHHH---hc----CCc----cch-HHH
Confidence 9999999999 99999997654333332 22 223477888886 578888776 23 211 111 222
Q ss_pred HHHHHHHc-CCcceEEEeCC-CCHHHHHHHHHHHH
Q psy3835 1613 GLKIECEH-KHYISAVIPAG-VNIAYMCTQIQTAV 1645 (1659)
Q Consensus 1613 a~~~e~~~-~~~fd~vi~n~-~~~~~~~~~l~~ii 1645 (1659)
++. +..+ ...||++|.++ .++++++.+|...|
T Consensus 141 ~~~-~~~~~~~~~dl~iDts~~s~~e~a~~i~~~l 174 (175)
T cd00227 141 KQA-RVVHAGVEYDLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred HHH-HHhcCCCcceEEEECCCCCHHHHHHHHHHhc
Confidence 221 2222 35689999876 36888877776554
No 188
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=97.89 E-value=6.8e-06 Score=69.00 Aligned_cols=48 Identities=31% Similarity=0.493 Sum_probs=40.0
Q ss_pred eeccccCCCCCccccccccCCcEEEEecCCCCCCCCcEEEEEeccCCCcccccCcCC
Q psy3835 1336 RALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPS 1392 (1659)
Q Consensus 1336 ra~f~y~~~~~~~~~L~f~~gdil~v~~t~~~~~~~~W~a~~v~~~~~~~~~GlIPs 1392 (1659)
+|.|+|.+..++ +|+|++||+|+|++. .+.+||.++..+. ...|+||+
T Consensus 1 ~Alydf~~~~~~--eLs~~~Gd~i~v~~~---~~~~Ww~~~~~~~----~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPD--ELSFKKGDIIEVLEK---SDDGWWKVRNEST----GKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTT--BSEB-TTEEEEEEEE---SSSSEEEEEETTT----TEEEEEEG
T ss_pred CCCeeeCCCCCC--EEeEECCCEEEEEEe---cCCCEEEEEECCC----CcEEEeeC
Confidence 689999999877 999999999999995 5568999988764 35899996
No 189
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.88 E-value=4.8e-05 Score=71.54 Aligned_cols=68 Identities=25% Similarity=0.329 Sum_probs=52.5
Q ss_pred CceEEEEecCCCcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEEecCC
Q psy3835 1140 PLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211 (1659)
Q Consensus 1140 ~lG~sl~~~~~~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 1211 (1659)
-+|+.+.. .+.|++|..|.++|+|+.+||++||.|++|||.++.++. ++...+ ..+..+.|.+.|++.
T Consensus 2 ~~G~~~~~-~~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~~~--~~l~~~-~~~~~v~l~v~r~g~ 69 (80)
T cd00990 2 YLGLTLDK-EEGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDALQ--DRLKEY-QAGDPVELTVFRDDR 69 (80)
T ss_pred cccEEEEc-cCCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHHHH--HHHHhc-CCCCEEEEEEEECCE
Confidence 36777754 356799999999999999999999999999999998722 222222 246788999988764
No 190
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=97.85 E-value=1.2e-05 Score=69.69 Aligned_cols=51 Identities=33% Similarity=0.573 Sum_probs=40.5
Q ss_pred eeeeccccCCCCCccccccccCCcEEEEe-cCCCCCCCCcEEEEEeccCCCcccccCcCChhH
Q psy3835 1334 YMRALFSRTGDLGDALQLRFHKDDILYVD-NTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYK 1395 (1659)
Q Consensus 1334 yvra~f~y~~~~~~~~~L~f~~gdil~v~-~t~~~~~~~~W~a~~v~~~~~~~~~GlIPs~~~ 1395 (1659)
|++|.++|.+...+ .|+|++||+++|+ +. .+.+||.+.. .| ..|+||+...
T Consensus 1 ~~~a~~d~~~~~~~--~Ls~~~Gd~i~v~~~~---~~~~ww~~~~---~g---~~G~~P~~~v 52 (55)
T PF07653_consen 1 YYRAIFDYVAEDPD--ELSFKKGDVIEVLGEK---DDDGWWLGEN---NG---RRGWFPSSYV 52 (55)
T ss_dssp EEEESSSBESSSTT--B-EB-TTEEEEEEEEE---CSTSEEEEEE---TT---EEEEEEGGGE
T ss_pred CEEEeEEECCCCCC--ceEEecCCEEEEEEee---cCCCEEEEEE---CC---cEEEEcHHHE
Confidence 78999999997766 8999999999999 63 5668999977 33 5799999864
No 191
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=97.84 E-value=0.04 Score=64.39 Aligned_cols=42 Identities=12% Similarity=0.068 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy3835 376 QHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQ 417 (1659)
Q Consensus 376 ~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~le 417 (1659)
+.+.-+..+++..+.+.+.++...+.++..+..++.....+.
T Consensus 9 eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~ 50 (319)
T PF09789_consen 9 EALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELI 50 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444445566666666666666666665555555544444333
No 192
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.84 E-value=6.1e-05 Score=70.83 Aligned_cols=66 Identities=26% Similarity=0.228 Sum_probs=51.4
Q ss_pred cCeEEecCCCcceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCeEEEEEEeCc
Q psy3835 1250 LGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSV 1319 (1659)
Q Consensus 1250 lGi~l~gg~~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~r~~ 1319 (1659)
+|+.+... ..|++|..|.++|+|+.+||++||+|++|||.++.++ ...+.. ...+..+.|.+.|+.
T Consensus 3 ~G~~~~~~-~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~~--~~~l~~-~~~~~~v~l~v~r~g 68 (80)
T cd00990 3 LGLTLDKE-EGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDAL--QDRLKE-YQAGDPVELTVFRDD 68 (80)
T ss_pred ccEEEEcc-CCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHHH--HHHHHh-cCCCCEEEEEEEECC
Confidence 67777543 3579999999999999999999999999999999872 222322 235678899998864
No 193
>KOG3606|consensus
Probab=97.82 E-value=3.5e-05 Score=83.92 Aligned_cols=83 Identities=30% Similarity=0.488 Sum_probs=71.1
Q ss_pred CCCCeEEEEEecC--CCCceEEEEec-----------CCCcEEEEEeCCCChhhhcC-CCCCCEEEeeCCeecCCCCHHH
Q psy3835 1125 HPGELRRVHIDKS--VEPLGIQIQCL-----------DSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQL 1190 (1659)
Q Consensus 1125 ~~~~~~~v~l~k~--~~~lG~sl~~~-----------~~~gv~I~~V~~gs~A~~~G-L~~GD~Il~VNg~~v~~~~~~~ 1190 (1659)
.|..-|.|.|.|- ..+|||.|+.| .-.||||+.+.|||.|+..| |.+.|.|++|||+.|.+.+.++
T Consensus 155 vPEtHRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQ 234 (358)
T KOG3606|consen 155 VPETHRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQ 234 (358)
T ss_pred cchhhhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHH
Confidence 3455678888886 47999999988 23699999999999999999 8999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEEE
Q psy3835 1191 AASVLRQCGNSITMLVQ 1207 (1659)
Q Consensus 1191 ~~~~l~~~~~~v~l~v~ 1207 (1659)
+..++-.-...+.++|.
T Consensus 235 VTDMMvANshNLIiTVk 251 (358)
T KOG3606|consen 235 VTDMMVANSHNLIITVK 251 (358)
T ss_pred HHHHHhhcccceEEEec
Confidence 99998776666667775
No 194
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.81 E-value=0.0064 Score=68.09 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q psy3835 576 KALKECNDLR 585 (1659)
Q Consensus 576 ~aieE~e~l~ 585 (1659)
.+..+|+.++
T Consensus 175 ell~~yeri~ 184 (239)
T COG1579 175 ELLSEYERIR 184 (239)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 195
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.81 E-value=6.3e-05 Score=72.38 Aligned_cols=61 Identities=36% Similarity=0.472 Sum_probs=50.3
Q ss_pred cceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCeEEEEEEeCcc
Q psy3835 1260 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVE 1320 (1659)
Q Consensus 1260 ~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~r~~~ 1320 (1659)
.|++|..|.++|||+++||++||+|++|||.++.+++....+..-...+..+.|.+.|+..
T Consensus 24 ~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~~~~~~~l~~~~~~~~i~l~v~r~g~ 84 (90)
T cd00987 24 KGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSVADLRRALAELKPGDKVTLTVLRGGK 84 (90)
T ss_pred CEEEEEEECCCCHHHHcCCCcCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 4899999999999999999999999999999999887655443323347889999988743
No 196
>PRK04040 adenylate kinase; Provisional
Probab=97.81 E-value=0.00015 Score=79.94 Aligned_cols=154 Identities=14% Similarity=0.057 Sum_probs=91.9
Q ss_pred CcEEEECCCh---HHHHHHHhhhCCCcccccccceec-----------CChHHHHHhccCCceEEEEEeCCeeeee-cHH
Q psy3835 1475 RPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMH-----------CPQAAMEKGLADNLFVDYRKKGAYFECT-SVA 1539 (1659)
Q Consensus 1475 RpvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttr-----------vs~~~f~~~i~~~~flE~~~~~g~~YGt-s~~ 1539 (1659)
+-|+|+|++| +|+.++|.+..|..|.+ +..-.. .++++|...-. . ++ .-++. -..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~-~~~g~~~~~~a~~~g~~~~~d~~r~l~~-~---~~-----~~~~~~a~~ 72 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKI-VNFGDVMLEVAKEEGLVEHRDEMRKLPP-E---EQ-----KELQREAAE 72 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeE-EecchHHHHHHHHcCCCCCHHHHhhCCh-h---hh-----HHHHHHHHH
Confidence 4578899887 99999998877521222 111110 23333332210 0 00 00111 122
Q ss_pred HHHHHHHcCCCeEEEEcChh-----------HHHHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHH
Q psy3835 1540 AVKDACDKNNAHVILDVSLA-----------GVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKE 1608 (1659)
Q Consensus 1540 ~V~~v~~~~gk~~iLdi~~~-----------~~~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~ 1608 (1659)
.|.+ +.. ++.+|+|-+.- -...++...+..+++|..||+ +.++++++- ..| .|+..+.+.++.
T Consensus 73 ~i~~-~~~-~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~-~i~~Rrl~d-~~R--~R~~es~e~I~~ 146 (188)
T PRK04040 73 RIAE-MAG-EGPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPD-EILMRRLRD-ETR--RRDVETEEDIEE 146 (188)
T ss_pred HHHH-hhc-CCCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHH-HHHHHHhcc-ccc--CCCCCCHHHHHH
Confidence 2333 234 56688887431 233445555566777777766 777777641 113 466788888999
Q ss_pred HHHHHHHHHHHcC---CcceEEEeCCCC--HHHHHHHHHHHH
Q psy3835 1609 MYEHGLKIECEHK---HYISAVIPAGVN--IAYMCTQIQTAV 1645 (1659)
Q Consensus 1609 ~~~~a~~~e~~~~---~~fd~vi~n~~~--~~~~~~~l~~ii 1645 (1659)
+++.+......|+ +.|+++|+|+ + ++.|+.+|.++|
T Consensus 147 ~~~~a~~~a~~~a~~~g~~~~iI~N~-d~~~e~a~~~i~~ii 187 (188)
T PRK04040 147 HQEMNRAAAMAYAVLTGATVKIVENR-EGLLEEAAEEIVEVL 187 (188)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEECC-CCCHHHHHHHHHHHh
Confidence 9888776545443 4699999999 8 999999999987
No 197
>PF13514 AAA_27: AAA domain
Probab=97.81 E-value=0.53 Score=66.57 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3835 389 KDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQ 426 (1659)
Q Consensus 389 ~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e 426 (1659)
..+...+..++..+...+.....++..++..+..++.+
T Consensus 672 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1111)
T PF13514_consen 672 AARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEE 709 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444433
No 198
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.80 E-value=9e-05 Score=69.45 Aligned_cols=68 Identities=22% Similarity=0.322 Sum_probs=53.2
Q ss_pred ceEEEEecCCCcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhC-CCeEEEEEEecCC
Q psy3835 1141 LGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQC-GNSITMLVQYSPD 1211 (1659)
Q Consensus 1141 lG~sl~~~~~~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~ 1211 (1659)
+||.+... ..+++|..|.++|+|+++||++||.|++|||.++.++. ++...+... +..+.+.+.|++.
T Consensus 3 ~~~~~g~~-~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~--~~~~~l~~~~~~~~~l~v~r~~~ 71 (79)
T cd00989 3 LGFVPGGP-PIEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKSWE--DLVDAVQENPGKPLTLTVERNGE 71 (79)
T ss_pred eeEeccCC-ccCcEEEeECCCCHHHHcCCCCCCEEEEECCEECCCHH--HHHHHHHHCCCceEEEEEEECCE
Confidence 56655443 34689999999999999999999999999999999764 445555543 6788899988664
No 199
>PF13514 AAA_27: AAA domain
Probab=97.79 E-value=0.55 Score=66.40 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=13.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3835 635 GKCQKERMDNLEANQEIDRLRKHTDKLQAEL 665 (1659)
Q Consensus 635 ~~~~~~~~~~~~~~~Ele~lr~~l~~l~~el 665 (1659)
.+.......+..+..++..+..++..++.++
T Consensus 896 ~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l 926 (1111)
T PF13514_consen 896 AELEELEEELEELEEELEELQEERAELEQEL 926 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444
No 200
>KOG3651|consensus
Probab=97.78 E-value=7e-05 Score=82.65 Aligned_cols=78 Identities=21% Similarity=0.344 Sum_probs=69.8
Q ss_pred EEEEEecCC-CCceEEEEecCC--CcEEEEEeCCCChhhhcC-CCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEE
Q psy3835 1130 RRVHIDKSV-EPLGIQIQCLDS--GGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITML 1205 (1659)
Q Consensus 1130 ~~v~l~k~~-~~lG~sl~~~~~--~gv~I~~V~~gs~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~ 1205 (1659)
-.|.|+|+. +-+|++|+||.. ..+||..|..++||++.| ++.||.|++|||.+|.+-+..++..++..+-+.|++.
T Consensus 6 ~~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~Ih 85 (429)
T KOG3651|consen 6 ETVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIH 85 (429)
T ss_pred CcEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEE
Confidence 468899985 556999999954 589999999999999999 9999999999999999999999999999988888877
Q ss_pred EE
Q psy3835 1206 VQ 1207 (1659)
Q Consensus 1206 v~ 1207 (1659)
+-
T Consensus 86 yN 87 (429)
T KOG3651|consen 86 YN 87 (429)
T ss_pred eh
Confidence 64
No 201
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.75 E-value=8e-05 Score=71.68 Aligned_cols=62 Identities=29% Similarity=0.359 Sum_probs=49.9
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEEecCC
Q psy3835 1150 SGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211 (1659)
Q Consensus 1150 ~~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 1211 (1659)
..|++|..|.+++||+++||++||.|++|||.++.++........-...+..+.|.+.|++.
T Consensus 23 ~~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~~~~~~~l~~~~~~~~i~l~v~r~g~ 84 (90)
T cd00987 23 TKGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSVADLRRALAELKPGDKVTLTVLRGGK 84 (90)
T ss_pred CCEEEEEEECCCCHHHHcCCCcCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 35899999999999999999999999999999999876543322222237889999988764
No 202
>KOG0979|consensus
Probab=97.73 E-value=0.036 Score=71.84 Aligned_cols=41 Identities=10% Similarity=0.193 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3835 316 QHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELR 356 (1659)
Q Consensus 316 ~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk 356 (1659)
.+.+++.+...++.....-...+..|+.+.+.+++.++...
T Consensus 182 eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~r 222 (1072)
T KOG0979|consen 182 ELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVR 222 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444443
No 203
>KOG4371|consensus
Probab=97.72 E-value=7.8e-05 Score=94.38 Aligned_cols=177 Identities=28% Similarity=0.411 Sum_probs=131.7
Q ss_pred EEEecCCCCceEEEEecCCCcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEEecCC
Q psy3835 1132 VHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211 (1659)
Q Consensus 1132 v~l~k~~~~lG~sl~~~~~~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 1211 (1659)
+.+.+..+.||..+..- .+-+.|+...-.+.-.+-.|+.||.++-+||+-+...-|.+|+.+++..++.|.|-|+|.+.
T Consensus 1151 ~~~~r~~~~l~~~~a~~-~~~~~~~~~~~~~~~~~pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 1229 (1332)
T KOG4371|consen 1151 VELDRNEGSLGVQIASL-SGRVCIKQLTSEPAISHPDIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRPPP 1229 (1332)
T ss_pred ccCCCCCCCCCceeccC-ccceehhhcccCCCCCCCCcchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecCCc
Confidence 33444567888887654 33455666555555555569999999999999999999999999999999999999999888
Q ss_pred ccccccCCCCCCCcccccCCCCCCCCeEEEEecCCcCccCeEEecC-CCcceEEEEeCCCChhhh-cCCCCCCEEEEECC
Q psy3835 1212 KYHELEGSGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYS-AGLRTGDRILEYNG 1289 (1659)
Q Consensus 1212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~k~~~~~lGi~l~gg-~~~gi~V~~V~~gs~A~~-~gL~~GD~Il~VNg 1289 (1659)
.+....-..+.+. ......+.+.+.+..++|+.+... ...|+|+..+..++.|.- +.+|.||++...+|
T Consensus 1230 ~~~d~~~~s~~~~---------~~~l~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~ 1300 (1332)
T KOG4371|consen 1230 AYSDQHHASSTSA---------SAPLISVMLLKKPMATLGLSLAKRTMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDG 1300 (1332)
T ss_pred ccccchhhhhhcc---------cchhhhheeeecccccccccccccCcCCceeeecccccccccccccccccceeeccCC
Confidence 7654432111111 112233455566667888887643 335899999988887776 77999999999999
Q ss_pred eeCCCcCHHHHHHHHcCCCCeEEEEEEeC
Q psy3835 1290 TDLRAATAEEAAYELAKPADKVTVLAQYS 1318 (1659)
Q Consensus 1290 ~~v~~~t~~~~~~~l~~~~~~v~L~v~r~ 1318 (1659)
.++.+.+....+..++-..+++.+++++.
T Consensus 1301 ~~~~~~~p~~~l~~~~~v~~p~~~~~~~~ 1329 (1332)
T KOG4371|consen 1301 EPVDGFTPATILEKLKLVQGPVQITVTRE 1329 (1332)
T ss_pred ccCCCCChHHHHHHhhhccCchhheehhh
Confidence 99999999988877776778888888764
No 204
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.71 E-value=0.0001 Score=69.18 Aligned_cols=60 Identities=25% Similarity=0.360 Sum_probs=47.5
Q ss_pred cceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCeEEEEEEeCcc
Q psy3835 1260 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVE 1320 (1659)
Q Consensus 1260 ~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~r~~~ 1320 (1659)
.|++|..|.++|||+. ||++||+|++|||.++.++........-...+..+.|.+.|+..
T Consensus 8 ~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~~~~~~~~l~~~~~~~~v~l~v~r~g~ 67 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKEAEELIDYIQSKKEGDTVKLKVKREEK 67 (79)
T ss_pred cCEEEEEECCCCchhh-CCCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence 4899999999999987 79999999999999998765543332212456789999988754
No 205
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=97.68 E-value=0.035 Score=65.92 Aligned_cols=85 Identities=12% Similarity=0.252 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 461 ERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIK 540 (1659)
Q Consensus 461 el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~ 540 (1659)
|.+..++.+..++.-+...++.|.+.+.+...++-++++++...-.+++++..-..++++....--.+..-+.+.+.+++
T Consensus 384 EKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeve 463 (527)
T PF15066_consen 384 EKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVE 463 (527)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHH
Q psy3835 541 TLEME 545 (1659)
Q Consensus 541 ~le~e 545 (1659)
+|+..
T Consensus 464 rLQ~l 468 (527)
T PF15066_consen 464 RLQQL 468 (527)
T ss_pred HHHHH
Confidence 44433
No 206
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.67 E-value=0.0059 Score=79.35 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=19.4
Q ss_pred cEEEEeCCcccCCCCCHHHHHHHhhc----CCCeEEEEEecCCC
Q psy3835 230 DRVLSINNRTVDGLSSAREGMALLSD----SPDVLTITTLKPTS 269 (1659)
Q Consensus 230 d~i~~in~~~~~~~~s~~e~~~~l~~----~~~~~~i~~~k~~~ 269 (1659)
--...|||+.+ +......+... .|..-++..++|..
T Consensus 106 rs~~~iNg~~v----~~~~l~~l~~~li~i~gQ~~~~~l~~~~~ 145 (563)
T TIGR00634 106 RSRAYLNGKPV----SASSLLEFTSELLDLHGQHDQQLLFRPDE 145 (563)
T ss_pred ceEEEECCEEc----cHHHHHHHhcCeEEEECchHHHHhcCHHH
Confidence 34578999985 34444444432 34444455555544
No 207
>KOG4371|consensus
Probab=97.67 E-value=7.1e-05 Score=94.74 Aligned_cols=130 Identities=25% Similarity=0.412 Sum_probs=107.0
Q ss_pred CCCCCCCCCEEEEECCEeCCCCChHHHHHHHHhcCCeEEEEEEeCCCCC------------cceEEEEEeccCCCCcCeE
Q psy3835 761 NPPSYKVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGA------------RSLVTTQLQLNNSYDHGLT 828 (1659)
Q Consensus 761 ~~g~l~~GD~Il~VNg~~~~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~------------~~~~~~~i~~~~~~~lG~~ 828 (1659)
-...|++||.++.|||+-+.+.-|-+|+..++..|+.|.|-|.|..+.. ..+..+.+.++...++|++
T Consensus 1183 ~~pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~d~~~~s~~~~~~~l~~~~~~~~p~~~~~~~ 1262 (1332)
T KOG4371|consen 1183 SHPDIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRPPPAYSDQHHASSTSASAPLISVMLLKKPMATLGLS 1262 (1332)
T ss_pred CCCCcchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecCCcccccchhhhhhcccchhhhheeeeccccccccc
Confidence 4578999999999999999999999999999999999999999987332 2224455555777889988
Q ss_pred e-----cCceEEEEeCCCChhhhcCCCCCCCEEEEeCCcccCCcccHHHHHHHHhcCCCeEEEEEEcc
Q psy3835 829 L-----ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 891 (1659)
Q Consensus 829 ~-----~~gi~I~~v~~gs~A~~~g~L~~GD~Il~ing~~v~~~~~~~ea~~~l~~~~~~v~l~v~r~ 891 (1659)
+ .+|+||..+...+.|...|.+++||+++..+|.++.+ .+-.....-++=.-+++.+.+.|.
T Consensus 1263 ~~~~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~-~~p~~~l~~~~~v~~p~~~~~~~~ 1329 (1332)
T KOG4371|consen 1263 LAKRTMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDG-FTPATILEKLKLVQGPVQITVTRE 1329 (1332)
T ss_pred ccccCcCCceeeecccccccccccccccccceeeccCCccCCC-CChHHHHHHhhhccCchhheehhh
Confidence 7 4899999999999999999999999999999999999 776665655554447777766554
No 208
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.66 E-value=0.00012 Score=68.72 Aligned_cols=58 Identities=24% Similarity=0.413 Sum_probs=47.9
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHH--hCCCeEEEEEEecCC
Q psy3835 1151 GGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLR--QCGNSITMLVQYSPD 1211 (1659)
Q Consensus 1151 ~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~--~~~~~v~l~v~r~~~ 1211 (1659)
.|++|..|.++|||+. ||++||.|++|||.++.++.. ....+. ..+..+.|.+.|++.
T Consensus 8 ~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~~~~--~~~~l~~~~~~~~v~l~v~r~g~ 67 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKEAEE--LIDYIQSKKEGDTVKLKVKREEK 67 (79)
T ss_pred cCEEEEEECCCCchhh-CCCCCCEEEEECCEECCCHHH--HHHHHHhCCCCCEEEEEEEECCE
Confidence 5799999999999986 899999999999999987543 455554 347789999988765
No 209
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.66 E-value=0.043 Score=66.10 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3835 376 QHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIK 424 (1659)
Q Consensus 376 ~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk 424 (1659)
.....+...++.|+.+...+.+..+.+...+..+......++.++..++
T Consensus 149 gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk 197 (325)
T PF08317_consen 149 GLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLK 197 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555544444444444444444444444444444433
No 210
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.65 E-value=0.00015 Score=67.90 Aligned_cols=59 Identities=25% Similarity=0.379 Sum_probs=47.5
Q ss_pred CcceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcC-CCCeEEEEEEeCc
Q psy3835 1259 AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK-PADKVTVLAQYSV 1319 (1659)
Q Consensus 1259 ~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~-~~~~v~L~v~r~~ 1319 (1659)
..+++|..|.++|+|+.+||++||+|++|||.++.++.... ..+.. .+..+.+++.|+.
T Consensus 11 ~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~--~~l~~~~~~~~~l~v~r~~ 70 (79)
T cd00989 11 PIEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKSWEDLV--DAVQENPGKPLTLTVERNG 70 (79)
T ss_pred ccCcEEEeECCCCHHHHcCCCCCCEEEEECCEECCCHHHHH--HHHHHCCCceEEEEEEECC
Confidence 34689999999999999999999999999999999775443 33333 3678889998864
No 211
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.65 E-value=0.0078 Score=62.96 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 389 KDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCE 428 (1659)
Q Consensus 389 ~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~ 428 (1659)
+.+.+....+.+.++..++.+......++.+|..|+..+.
T Consensus 6 k~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~ 45 (143)
T PF12718_consen 6 KLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQ 45 (143)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444333333333333333333333333333
No 212
>KOG3542|consensus
Probab=97.61 E-value=7.5e-05 Score=89.84 Aligned_cols=89 Identities=30% Similarity=0.501 Sum_probs=74.6
Q ss_pred CCCCeEEEEec-CCcCccCeEEecCCC--cceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCe
Q psy3835 1234 SGEPRFLMIET-RKCSNLGISLVGGNA--VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADK 1310 (1659)
Q Consensus 1234 ~~~~~~v~l~k-~~~~~lGi~l~gg~~--~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~ 1310 (1659)
...+|.|.|.+ ....+|-|.+.||.. .||||..|.||+.|++.||+.||+|++|||+++.+++...|..+| ..+-.
T Consensus 533 KAK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiL-rnnth 611 (1283)
T KOG3542|consen 533 KAKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEIL-RNNTH 611 (1283)
T ss_pred cccceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHh-cCCce
Confidence 35678888888 566789999999854 479999999999999999999999999999999999999999877 45567
Q ss_pred EEEEEEeCccccc
Q psy3835 1311 VTVLAQYSVERYN 1323 (1659)
Q Consensus 1311 v~L~v~r~~~~~~ 1323 (1659)
++|+|.-+.-.|.
T Consensus 612 LtltvKtNvfvfK 624 (1283)
T KOG3542|consen 612 LTLTVKTNVFVFK 624 (1283)
T ss_pred EEEEEecceeeHH
Confidence 7888876644443
No 213
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=97.61 E-value=4.3e-05 Score=64.29 Aligned_cols=47 Identities=28% Similarity=0.531 Sum_probs=37.7
Q ss_pred eccccCCCCCccccccccCCcEEEEecCCCCCCCCcEEEEEeccCCCcccccCcCChh
Q psy3835 1337 ALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKY 1394 (1659)
Q Consensus 1337 a~f~y~~~~~~~~~L~f~~gdil~v~~t~~~~~~~~W~a~~v~~~~~~~~~GlIPs~~ 1394 (1659)
|+++|.|..++ +|+|++||+|.|+.. .+.+||.+.+ + ...|++|+..
T Consensus 1 Al~~y~~~~~d--ELs~~~Gd~i~v~~~---~~~~W~~g~~---~---g~~G~~P~~y 47 (49)
T PF14604_consen 1 ALYDYEAQDPD--ELSFKKGDVITVLEK---SDDGWWYGRN---T---GRTGLFPANY 47 (49)
T ss_dssp ESSCBCSSSTT--B-EB-TTEEEEEEEE---SSTSEEEEEE---T---TEEEEEEGGG
T ss_pred CCccCCCCCcC--EeeEcCCCEEEEEEe---CCCCEEEEEE---C---CEEEEECHHh
Confidence 57899998877 999999999999974 6788999975 3 3699999874
No 214
>PRK10869 recombination and repair protein; Provisional
Probab=97.61 E-value=0.011 Score=76.06 Aligned_cols=38 Identities=32% Similarity=0.165 Sum_probs=21.4
Q ss_pred EEEEeCCcccCCCCCHHHHHHHhhc-CCCeEEEEEecCCC
Q psy3835 231 RVLSINNRTVDGLSSAREGMALLSD-SPDVLTITTLKPTS 269 (1659)
Q Consensus 231 ~i~~in~~~~~~~~s~~e~~~~l~~-~~~~~~i~~~k~~~ 269 (1659)
-.+.|||+.+ .++.+++....|-. .|.-.+..+|+|..
T Consensus 103 s~~~INg~~v-~~~~l~~l~~~li~ihgQ~~~~~ll~~~~ 141 (553)
T PRK10869 103 SRGFINGTPV-PLSQLRELGQLLIQIHGQHAHQLLLKPEH 141 (553)
T ss_pred ceEEECCeec-cHHHHHHHHHhhhheeCcChHHHhcCHHH
Confidence 3578999986 33345555554432 33334455566665
No 215
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.61 E-value=0.01 Score=62.05 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=10.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy3835 565 REIASALHDRDKALKECNDLRERFGE 590 (1659)
Q Consensus 565 ~ei~~l~~~~~~aieE~e~l~er~~e 590 (1659)
+....+..........|+.+..+|.+
T Consensus 115 Rkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 115 RKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444443
No 216
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.60 E-value=0.00019 Score=88.46 Aligned_cols=73 Identities=21% Similarity=0.381 Sum_probs=61.1
Q ss_pred CCceEEEEecCC-----CcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHh-CCCeEEEEEEecCC
Q psy3835 1139 EPLGIQIQCLDS-----GGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQ-CGNSITMLVQYSPD 1211 (1659)
Q Consensus 1139 ~~lG~sl~~~~~-----~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~~ 1211 (1659)
.++|+.+..... .|++|..|.++|||+++||++||+|++|||.++.+++..++..+++. .+..|.|+|.|++.
T Consensus 85 ~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~ 163 (389)
T PLN00049 85 TGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGPE 163 (389)
T ss_pred eEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 477887764322 38999999999999999999999999999999999988888877764 46789999988654
No 217
>KOG3606|consensus
Probab=97.60 E-value=0.00011 Score=80.14 Aligned_cols=82 Identities=29% Similarity=0.442 Sum_probs=70.1
Q ss_pred ecceecccCCC-------CCcccccceEEEEeCCCCcccccCCcCCCcEEEEeCCcccCCCCCHHHHHHHhhcCCCeEEE
Q psy3835 190 LDGLQLNNSYD-------HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTI 262 (1659)
Q Consensus 190 ~~~l~~~~~~~-------~g~~~~~~~~v~~i~~g~~a~~dg~l~~gd~i~~in~~~~~~~~s~~e~~~~l~~~~~~~~i 262 (1659)
-++|+|-+.-+ +|+.--.||||+.+.|||+|.--|.|.|.|.||+|||+.|-++ ++.+++..+-.....+.|
T Consensus 170 ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGK-TLDQVTDMMvANshNLIi 248 (358)
T KOG3606|consen 170 EKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGK-TLDQVTDMMVANSHNLII 248 (358)
T ss_pred CCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccc-cHHHHHHHHhhcccceEE
Confidence 45677654333 3888899999999999999999999999999999999999998 599999999998888888
Q ss_pred EEecCCCcCCC
Q psy3835 263 TTLKPTSLGEH 273 (1659)
Q Consensus 263 ~~~k~~~~~~~ 273 (1659)
||- |.++..+
T Consensus 249 TVk-PANQRnn 258 (358)
T KOG3606|consen 249 TVK-PANQRNN 258 (358)
T ss_pred Eec-ccccccc
Confidence 774 8877743
No 218
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.60 E-value=0.00024 Score=87.29 Aligned_cols=73 Identities=25% Similarity=0.415 Sum_probs=65.2
Q ss_pred CCCceEEEEecCCCcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhC-CCeEEEEEEecC
Q psy3835 1138 VEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQC-GNSITMLVQYSP 1210 (1659)
Q Consensus 1138 ~~~lG~sl~~~~~~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~ 1210 (1659)
-+|+|+.+.-....++.|.++.+|+||+++||++||.|+.|||.++.+++..+++..++.. |..|+|++.|..
T Consensus 99 ~~GiG~~i~~~~~~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~ 172 (406)
T COG0793 99 FGGIGIELQMEDIGGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAG 172 (406)
T ss_pred ccceeEEEEEecCCCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcC
Confidence 4688888887655899999999999999999999999999999999999999999888864 789999999863
No 219
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.11 Score=59.06 Aligned_cols=33 Identities=12% Similarity=0.224 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 305 HTLKELEYYRGQHQAAMAQLEAAAQESSSLRSK 337 (1659)
Q Consensus 305 ~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e 337 (1659)
.++++++.+..++.++..+..+++.++.+.+.+
T Consensus 49 ~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~e 81 (265)
T COG3883 49 NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAE 81 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 220
>PRK09039 hypothetical protein; Validated
Probab=97.58 E-value=0.011 Score=71.23 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 383 NKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQE 433 (1659)
Q Consensus 383 ~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~ 433 (1659)
.++...+++++.++.++.++-..+.........++.++..++.++..++.+
T Consensus 46 ~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~ 96 (343)
T PRK09039 46 REISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAE 96 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555444444455555555555555544433333
No 221
>KOG3552|consensus
Probab=97.58 E-value=6.9e-05 Score=93.61 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=69.0
Q ss_pred eecceecccCCCCCcccccceEEEEeCCCCcccccCCcCCCcEEEEeCCcccCCCCCHHHHHHHhhcCCCeEEEEEecC
Q psy3835 189 YLDGLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 267 (1659)
Q Consensus 189 ~~~~l~~~~~~~~g~~~~~~~~v~~i~~g~~a~~dg~l~~gd~i~~in~~~~~~~~s~~e~~~~l~~~~~~~~i~~~k~ 267 (1659)
+.+.|..+...|+||..+-.|.|..|++||++ -|.|++|||||.|||..|.+. ..+.|..|++.|.+.+.|||.+|
T Consensus 57 r~vq~~r~~~lGFgfvagrPviVr~VT~GGps--~GKL~PGDQIl~vN~Epv~da-prervIdlvRace~sv~ltV~qP 132 (1298)
T KOG3552|consen 57 RQVQLQRNASLGFGFVAGRPVIVRFVTEGGPS--IGKLQPGDQILAVNGEPVKDA-PRERVIDLVRACESSVNLTVCQP 132 (1298)
T ss_pred hhhhhhccccccceeecCCceEEEEecCCCCc--cccccCCCeEEEecCcccccc-cHHHHHHHHHHHhhhcceEEecc
Confidence 44556666667888888888999999999999 799999999999999999998 69999999999999999999998
No 222
>PRK09039 hypothetical protein; Validated
Probab=97.57 E-value=0.0076 Score=72.69 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHH
Q psy3835 525 MEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASA 570 (1659)
Q Consensus 525 l~~L~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l 570 (1659)
+..|+.++..++.++..++..+...+....+.+.+++.|+.+|+.+
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444333344444444444444333
No 223
>KOG0243|consensus
Probab=97.56 E-value=0.73 Score=61.31 Aligned_cols=58 Identities=16% Similarity=0.109 Sum_probs=30.1
Q ss_pred cchhhccchHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 282 VNSSTQTMPLYVRQHNETVR---------RGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYS 339 (1659)
Q Consensus 282 i~~~~~Ele~L~~q~~E~~~---------rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~ 339 (1659)
+-+...||+.|+..+..+.. +|.+.+.++.....+++++..+++.++.++..+...|.
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667778888877776643 34334444444444444444444444444444444443
No 224
>KOG3542|consensus
Probab=97.56 E-value=0.00011 Score=88.35 Aligned_cols=81 Identities=32% Similarity=0.453 Sum_probs=71.7
Q ss_pred CCeEEEEEecC--CCCceEEEEecC--CCcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeE
Q psy3835 1127 GELRRVHIDKS--VEPLGIQIQCLD--SGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSI 1202 (1659)
Q Consensus 1127 ~~~~~v~l~k~--~~~lG~sl~~~~--~~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v 1202 (1659)
..+|.|.|.|. ..+|-|.+.||. ..||||..|.||+-|++.||+-||+|++|||++..+.+...|..+|+. ...+
T Consensus 534 AK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiLrn-nthL 612 (1283)
T KOG3542|consen 534 AKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEILRN-NTHL 612 (1283)
T ss_pred ccceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHhcC-CceE
Confidence 46789999995 578999999993 569999999999999999999999999999999999999999999986 4567
Q ss_pred EEEEEe
Q psy3835 1203 TMLVQY 1208 (1659)
Q Consensus 1203 ~l~v~r 1208 (1659)
+|+|.-
T Consensus 613 tltvKt 618 (1283)
T KOG3542|consen 613 TLTVKT 618 (1283)
T ss_pred EEEEec
Confidence 777754
No 225
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.55 E-value=0.055 Score=59.58 Aligned_cols=88 Identities=14% Similarity=0.172 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 383 NKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRER 462 (1659)
Q Consensus 383 ~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el 462 (1659)
.++..++.++.+++.++.++..+-..++.-....+..+..+...-+++-+-+....+++..|..++.........++..+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl 91 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544444443333334444444444444444444444444444444444444444444443
Q ss_pred HHHHHHHH
Q psy3835 463 NEYQEALA 470 (1659)
Q Consensus 463 ~~l~~~l~ 470 (1659)
.....++.
T Consensus 92 k~~~~el~ 99 (194)
T PF15619_consen 92 KDKDEELL 99 (194)
T ss_pred HHHHHHHH
Confidence 33333333
No 226
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.54 E-value=0.091 Score=62.32 Aligned_cols=50 Identities=20% Similarity=0.275 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3835 375 NQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIK 424 (1659)
Q Consensus 375 ~~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk 424 (1659)
+.....+...++.|+.+...|.+..+.+..-+-.+..+...++.++..++
T Consensus 143 egLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~ 192 (312)
T smart00787 143 EGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLK 192 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555554444444443344444444444443333
No 227
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.53 E-value=0.56 Score=67.15 Aligned_cols=28 Identities=14% Similarity=-0.001 Sum_probs=15.6
Q ss_pred cCCCcEEEEeCCcccCCCCCHHHHHHHhhcCC
Q psy3835 226 LAVGDRVLSINNRTVDGLSSAREGMALLSDSP 257 (1659)
Q Consensus 226 l~~gd~i~~in~~~~~~~~s~~e~~~~l~~~~ 257 (1659)
+-.+..++.-.|++ .+..+-...|...+
T Consensus 129 i~~d~~l~~~~~~p----lt~~~l~~~l~~~~ 156 (1353)
T TIGR02680 129 IGYDLWLLSPAGIP----LTRDRLKEALGDGG 156 (1353)
T ss_pred cCCCceeecCCCcc----CCHHHHHHHhCCCC
Confidence 54444555445655 24666666666655
No 228
>KOG2129|consensus
Probab=97.52 E-value=0.094 Score=61.20 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=24.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 288 TMPLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQ 323 (1659)
Q Consensus 288 Ele~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~ 323 (1659)
-.++|...+.-+..+-+.++.|++.++....-+.++
T Consensus 44 ~~e~l~~rv~slsq~Nkvlk~elet~k~kcki~qee 79 (552)
T KOG2129|consen 44 PGESLGARVSSLSQRNKVLKGELETLKGKCKIMQEE 79 (552)
T ss_pred CHHHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhc
Confidence 367777777777777777777777666655444433
No 229
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.52 E-value=0.00026 Score=85.77 Aligned_cols=72 Identities=21% Similarity=0.396 Sum_probs=61.0
Q ss_pred CCceEEEEecCCCcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHh-CCCeEEEEEEecCC
Q psy3835 1139 EPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQ-CGNSITMLVQYSPD 1211 (1659)
Q Consensus 1139 ~~lG~sl~~~~~~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~~ 1211 (1659)
.++|+.+... ..+++|..|.++|||+++||++||+|++|||.++.+++..++...+.. .+..+.|+|.|++.
T Consensus 51 ~~lG~~~~~~-~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~ 123 (334)
T TIGR00225 51 EGIGIQVGMD-DGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGK 123 (334)
T ss_pred EEEEEEEEEE-CCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCC
Confidence 4678887653 468999999999999999999999999999999999987777777654 57789999998764
No 230
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=97.49 E-value=0.12 Score=61.51 Aligned_cols=56 Identities=20% Similarity=0.247 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 413 LELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEA 468 (1659)
Q Consensus 413 le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~ 468 (1659)
+..+.+.++..++.+.+...+.+.++-+++.++...-.|+.++...-++......+
T Consensus 392 lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsq 447 (527)
T PF15066_consen 392 LQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQ 447 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHH
Confidence 33444444444444444444444444444444444444444444333333333333
No 231
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.47 E-value=1.3 Score=62.06 Aligned_cols=10 Identities=50% Similarity=0.677 Sum_probs=5.0
Q ss_pred ehhhHHHHHH
Q psy3835 157 RERNEYQEAL 166 (1659)
Q Consensus 157 ~r~~~~~~~~ 166 (1659)
+.|+.+.+.|
T Consensus 167 ~eR~~il~~l 176 (1047)
T PRK10246 167 KERAELLEEL 176 (1047)
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 232
>KOG1937|consensus
Probab=97.47 E-value=0.45 Score=56.70 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=12.7
Q ss_pred cCCCCCcccccceEEEEeCCCC
Q psy3835 197 NSYDHGLTLESGLYICKISPGS 218 (1659)
Q Consensus 197 ~~~~~g~~~~~~~~v~~i~~g~ 218 (1659)
.+++.|+.++.| |=+=+.|..
T Consensus 73 ~ckdlgyrgD~g-yqtfLypn~ 93 (521)
T KOG1937|consen 73 YCKDLGYRGDTG-YQTFLYPNI 93 (521)
T ss_pred HHHHcCCCcccc-hhheecCCc
Confidence 345667777777 555555554
No 233
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.44 E-value=0.099 Score=57.60 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy3835 518 RDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRE 586 (1659)
Q Consensus 518 ~~~l~~el~~L~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~e 586 (1659)
++.+..++..+...+...+.++..++..+.-. ......++........++......+..++..+..
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~---~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~ 185 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELE---NKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQ 185 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555554444433222 1223333333333334444444444444444433
No 234
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.44 E-value=0.16 Score=61.34 Aligned_cols=8 Identities=25% Similarity=0.576 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy3835 556 LSYQIETL 563 (1659)
Q Consensus 556 l~~ele~L 563 (1659)
++.++..|
T Consensus 281 Lk~~~~~L 288 (325)
T PF08317_consen 281 LKAKVDAL 288 (325)
T ss_pred HHHHHHHH
Confidence 33333333
No 235
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.41 E-value=0.44 Score=55.23 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy3835 556 LSYQIETLKREIASALHDRDKALKEC 581 (1659)
Q Consensus 556 l~~ele~Lk~ei~~l~~~~~~aieE~ 581 (1659)
+...+..|+.++..+......+..+.
T Consensus 227 ~~shI~~Lr~EV~RLR~qL~~sq~e~ 252 (310)
T PF09755_consen 227 LSSHIRSLRQEVSRLRQQLAASQQEH 252 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333
No 236
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.40 E-value=0.00036 Score=85.77 Aligned_cols=71 Identities=28% Similarity=0.403 Sum_probs=63.4
Q ss_pred CccCeEEecCCCcceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcC-CCCeEEEEEEeC
Q psy3835 1248 SNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK-PADKVTVLAQYS 1318 (1659)
Q Consensus 1248 ~~lGi~l~gg~~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~-~~~~v~L~v~r~ 1318 (1659)
.++|+.+...+..+++|.++.+|+||+++||++||+|+.|||.++.+++..+++..|+. .+..|+|++.|.
T Consensus 100 ~GiG~~i~~~~~~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~ 171 (406)
T COG0793 100 GGIGIELQMEDIGGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA 171 (406)
T ss_pred cceeEEEEEecCCCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence 47888888765579999999999999999999999999999999999999999988774 567999999996
No 237
>KOG0609|consensus
Probab=97.40 E-value=0.00041 Score=83.89 Aligned_cols=84 Identities=33% Similarity=0.458 Sum_probs=76.5
Q ss_pred CCCeEEEEEecC-CCCceEEEEecCCCcEEEEEeCCCChhhhcC-CCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEE
Q psy3835 1126 PGELRRVHIDKS-VEPLGIQIQCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSIT 1203 (1659)
Q Consensus 1126 ~~~~~~v~l~k~-~~~lG~sl~~~~~~gv~I~~V~~gs~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~ 1203 (1659)
....+.|.|.|. +.++|.++.......+||..|..||.|++.| |+.||.|++|||.++.+.+..++..+++.+.+.++
T Consensus 120 ~~~vriv~i~k~~~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~it 199 (542)
T KOG0609|consen 120 VEAVRIVRIVKNTGEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSIT 199 (542)
T ss_pred cceeEEEEEeecCCCccceEEEeccCCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEE
Confidence 345788999998 7899999998755589999999999999999 99999999999999999999999999999999999
Q ss_pred EEEEec
Q psy3835 1204 MLVQYS 1209 (1659)
Q Consensus 1204 l~v~r~ 1209 (1659)
|.|...
T Consensus 200 fkiiP~ 205 (542)
T KOG0609|consen 200 FKIIPS 205 (542)
T ss_pred EEEccc
Confidence 999743
No 238
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.39 E-value=0.26 Score=63.20 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3835 392 YDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQ 426 (1659)
Q Consensus 392 ~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e 426 (1659)
+....++..++...+..++...+..+.++.+++..
T Consensus 209 ~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~k 243 (511)
T PF09787_consen 209 YIEYLRESGELQEQLELLKAEGESEEAELQQYKQK 243 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33344444444444444555555555555555533
No 239
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.37 E-value=0.00099 Score=80.71 Aligned_cols=133 Identities=17% Similarity=0.172 Sum_probs=92.6
Q ss_pred EEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEE-ecCCccccccCCCCCCCcccccCCCC
Q psy3835 1155 VSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQ-YSPDKYHELEGSGSSSAENESVSGRG 1233 (1659)
Q Consensus 1155 I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~-r~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 (1659)
|..|.|+|+|+++||++||+|++|||..+.+|... ...+ .+..+.|.|. +++.
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw~D~--~~~l--~~e~l~L~V~~rdGe---------------------- 55 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVAPRDLIDY--QFLC--ADEELELEVLDANGE---------------------- 55 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEECCCHHHH--HHHh--cCCcEEEEEEcCCCe----------------------
Confidence 67899999999999999999999999999987653 3333 2466888886 3332
Q ss_pred CCCCeEEEEecCCcCccCeEEecCC---------C-cceEEEEeCCCChhhhcCCCCCCEEEEE---CCeeCCCcCHHHH
Q psy3835 1234 SGEPRFLMIETRKCSNLGISLVGGN---------A-VGIYVHSVQSGSLGYSAGLRTGDRILEY---NGTDLRAATAEEA 1300 (1659)
Q Consensus 1234 ~~~~~~v~l~k~~~~~lGi~l~gg~---------~-~gi~V~~V~~gs~A~~~gL~~GD~Il~V---Ng~~v~~~t~~~~ 1300 (1659)
...+.+.+..+++||+.....- . .=+||...-+| .-.---++-.|-=|+. |-+.++|++..+.
T Consensus 56 ---~~~l~Ie~~~dedlG~~f~~~~~d~~~~C~N~C~FCFidQlP~g-mR~sLY~KDDDyRLSFL~GnyiTLTNl~~~d~ 131 (433)
T TIGR03279 56 ---SHQIEIEKDLDEDLGLEFTTALFDGLIQCNNRCPFCFIDQQPPG-KRESLYLKDDDYRLSFLYGSYLTLTNLPPAEW 131 (433)
T ss_pred ---EEEEEEecCCCCCCcEEeccccCCcccccCCcCceEeccCCCCC-CcCcceeccCcchhhhhccceeeecCCCHHHH
Confidence 2446677777788998876431 1 12566665443 2111235666654443 6689999999998
Q ss_pred HHHHcCCCCeEEEEEEe
Q psy3835 1301 AYELAKPADKVTVLAQY 1317 (1659)
Q Consensus 1301 ~~~l~~~~~~v~L~v~r 1317 (1659)
-.+++..=.++.+.|.-
T Consensus 132 ~RI~~~~lspl~iSVha 148 (433)
T TIGR03279 132 QRIEQLRLSPLYVSVHA 148 (433)
T ss_pred HHHHHcCCCCEEEEEec
Confidence 88887777788887764
No 240
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.37 E-value=0.00046 Score=85.11 Aligned_cols=72 Identities=26% Similarity=0.338 Sum_probs=58.5
Q ss_pred ccCeEEecCCC-----cceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcC-CCCeEEEEEEeCcc
Q psy3835 1249 NLGISLVGGNA-----VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK-PADKVTVLAQYSVE 1320 (1659)
Q Consensus 1249 ~lGi~l~gg~~-----~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~-~~~~v~L~v~r~~~ 1320 (1659)
++|+.+..... .|++|..|.+||||+++||++||+|++|||+++.+++..++...+.. .+..|.|+|.|+..
T Consensus 86 GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~ 163 (389)
T PLN00049 86 GVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGPE 163 (389)
T ss_pred EEEEEEEEccCCCCccCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 56777643221 38999999999999999999999999999999999887777766653 56789999998653
No 241
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.36 E-value=0.085 Score=69.15 Aligned_cols=50 Identities=8% Similarity=0.035 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 469 LAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSER 518 (1659)
Q Consensus 469 l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~ 518 (1659)
...+...+..++.++..+..+...++.++++-+....++..+...++.++
T Consensus 661 ~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el 710 (769)
T PF05911_consen 661 YESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEEL 710 (769)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence 33333333333333334443344444444444444444433333333333
No 242
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.34 E-value=0.0036 Score=64.90 Aligned_cols=105 Identities=22% Similarity=0.213 Sum_probs=66.0
Q ss_pred CeEEEEEecC-----CCCceEEEEec-----CCCcEEEEEeCCCChhhhcCCCC-CCEEEeeCCeecCCCCHHHHHHHHH
Q psy3835 1128 ELRRVHIDKS-----VEPLGIQIQCL-----DSGGVFVSTVSEHSLASQVGLQV-GDQLLEVCGINMRSATYQLAASVLR 1196 (1659)
Q Consensus 1128 ~~~~v~l~k~-----~~~lG~sl~~~-----~~~gv~I~~V~~gs~A~~~GL~~-GD~Il~VNg~~v~~~~~~~~~~~l~ 1196 (1659)
..|.|.+... .+.||+++.-. ...+.-|..|.|+|||+.|||.+ .|.|+.+++..+.+.+.. ...+.
T Consensus 10 ~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~~~l--~~~v~ 87 (138)
T PF04495_consen 10 TTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDEDDL--FELVE 87 (138)
T ss_dssp SEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--STCHH--HHHHH
T ss_pred eEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCHHHH--HHHHH
Confidence 4566777653 36789999876 24589999999999999999998 699999999888865444 33443
Q ss_pred -hCCCeEEEEEEecCCccccccCCCCCCCcccccCCCCCCCCeEEEEec----CCcCccCeEEecC
Q psy3835 1197 -QCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGEPRFLMIET----RKCSNLGISLVGG 1257 (1659)
Q Consensus 1197 -~~~~~v~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~k----~~~~~lGi~l~gg 1257 (1659)
..+..+.|.|..... ...|.|.+.. .+.+-||+.|..|
T Consensus 88 ~~~~~~l~L~Vyns~~-----------------------~~vR~V~i~P~~~WgG~GlLGc~ig~G 130 (138)
T PF04495_consen 88 ANENKPLQLYVYNSKT-----------------------DSVREVTITPSRNWGGRGLLGCHIGYG 130 (138)
T ss_dssp HTTTS-EEEEEEETTT-----------------------TCEEEEEE---TTSSSSTSSSEEEE-S
T ss_pred HcCCCcEEEEEEECCC-----------------------CeEEEEEEEcCCCCCCCeeeeEEecce
Confidence 346788888863322 2345666643 3456789988655
No 243
>KOG4792|consensus
Probab=97.33 E-value=0.00026 Score=75.40 Aligned_cols=59 Identities=29% Similarity=0.497 Sum_probs=48.4
Q ss_pred CcceeeeccccCCCCCccccccccCCcEEEEecCCCCCCCCcEEEEEeccCCCcccccCcCChhHHHHH
Q psy3835 1331 DSFYMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYKVEEE 1399 (1659)
Q Consensus 1331 ~~~yvra~f~y~~~~~~~~~L~f~~gdil~v~~t~~~~~~~~W~a~~v~~~~~~~~~GlIPs~~~~e~~ 1399 (1659)
...|||+.|++.+.... .|.|++||||.|++ +....||-|+.- .+..|+||-++-+..+
T Consensus 123 ~~~~vr~~fdF~G~dee--DLPFkkGeiL~I~~---K~eeqWW~Arns-----~Gk~GmIPvpYVe~~~ 181 (293)
T KOG4792|consen 123 EAEYVRALFDFNGNDEE--DLPFKKGEILRIRD---KPEEQWWNARNS-----EGKRGMIPVPYVEKYR 181 (293)
T ss_pred hhhheeeeeccCCCccc--cCCcccCcEEEEec---CcHHHhhhhhcc-----CCcccceechHHHhhh
Confidence 57899999999987655 89999999999999 466679988643 2469999999877653
No 244
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=97.32 E-value=0.087 Score=61.70 Aligned_cols=7 Identities=29% Similarity=0.743 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy3835 585 RERFGEF 591 (1659)
Q Consensus 585 ~er~~e~ 591 (1659)
++|+..+
T Consensus 202 ~erl~q~ 208 (319)
T PF09789_consen 202 KERLKQL 208 (319)
T ss_pred HHHHHHH
Confidence 3333333
No 245
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.32 E-value=0.19 Score=55.93 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 495 KDLKRLTEERNAAMQEYSLIMSERDSV 521 (1659)
Q Consensus 495 ~eleelkee~~~~~~el~~l~~e~~~l 521 (1659)
+++..++-+.+.+.+.+..++.+++.+
T Consensus 100 k~l~~Lk~e~evL~qr~~kle~ErdeL 126 (201)
T PF13851_consen 100 KELKDLKWEHEVLEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 246
>KOG1850|consensus
Probab=97.29 E-value=0.53 Score=53.56 Aligned_cols=29 Identities=0% Similarity=-0.175 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 292 YVRQHNETVRRGDHTLKELEYYRGQHQAA 320 (1659)
Q Consensus 292 L~~q~~E~~~rl~~le~El~~l~~~l~el 320 (1659)
-.+.++-+..++....+....+.++..-+
T Consensus 23 ~eekik~L~~~~~d~~e~~~~v~~~~kvl 51 (391)
T KOG1850|consen 23 VEEKIKKLAESEKDNAELKIKVLDYDKVL 51 (391)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 247
>KOG1850|consensus
Probab=97.28 E-value=0.54 Score=53.51 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy3835 528 LSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLR 585 (1659)
Q Consensus 528 L~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~ 585 (1659)
|.+++..+..+.+.+++-+.....-+.....+++.+.+.+..+.++-......++..+
T Consensus 220 lK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aN 277 (391)
T KOG1850|consen 220 LKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENAN 277 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344444444444444444433334444455555555555555444444444444333
No 248
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.27 E-value=0.00061 Score=82.57 Aligned_cols=70 Identities=23% Similarity=0.306 Sum_probs=58.4
Q ss_pred ccCeEEecCCCcceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcC-CCCeEEEEEEeCc
Q psy3835 1249 NLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK-PADKVTVLAQYSV 1319 (1659)
Q Consensus 1249 ~lGi~l~gg~~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~-~~~~v~L~v~r~~ 1319 (1659)
++|+.+... ..+++|..|.++|||+++||++||+|++|||.++.+++..+....+.. .+..+.|++.|+.
T Consensus 52 ~lG~~~~~~-~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g 122 (334)
T TIGR00225 52 GIGIQVGMD-DGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG 122 (334)
T ss_pred EEEEEEEEE-CCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC
Confidence 578777643 358999999999999999999999999999999999876666655543 5778999999874
No 249
>KOG4809|consensus
Probab=97.25 E-value=0.89 Score=55.46 Aligned_cols=31 Identities=10% Similarity=-0.022 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 441 RNGLKQQCTAAIRQWDIALRERNEYQEALAK 471 (1659)
Q Consensus 441 i~~L~~el~~l~~~~~~l~~el~~l~~~l~e 471 (1659)
...+..++..++.-+++..+++-..+.+++.
T Consensus 375 glk~ds~Lk~leIalEqkkEec~kme~qLkk 405 (654)
T KOG4809|consen 375 GLKRDSKLKSLEIALEQKKEECSKMEAQLKK 405 (654)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444433
No 250
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.25 E-value=0.00073 Score=78.02 Aligned_cols=71 Identities=24% Similarity=0.345 Sum_probs=56.2
Q ss_pred cCeEEe--cCCCcceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCeEEEEEEeCcc
Q psy3835 1250 LGISLV--GGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVE 1320 (1659)
Q Consensus 1250 lGi~l~--gg~~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~r~~~ 1320 (1659)
+|+... ++...|+.|..+.++++|+++||++||+|++|||+++.++.....+..-...+..+.|+|.|+..
T Consensus 179 lgi~p~~~~g~~~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~~~~~~~l~~~~~~~~v~l~V~R~G~ 251 (259)
T TIGR01713 179 IRLSPVMKNDKLEGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDPEQAFQALQMLREETNLTLTVERDGQ 251 (259)
T ss_pred EeEEEEEeCCceeEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCeEEEEEEECCE
Confidence 455543 23346999999999999999999999999999999999887665444333566789999999864
No 251
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=97.24 E-value=1.1 Score=56.18 Aligned_cols=62 Identities=13% Similarity=0.075 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 537 RKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAAKEEC 598 (1659)
Q Consensus 537 ~ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~~~~e~ 598 (1659)
.....+...+.........+++++...+.+.+.+......++..|...++.+-.....++..
T Consensus 1059 ~RRDELh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~VV~AK~~WC~V 1120 (1480)
T COG3096 1059 IRRDELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQVVTAKAGWCAV 1120 (1480)
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhh
Confidence 33344444455555556667777777777777777777788888888888776666555443
No 252
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.24 E-value=0.25 Score=65.02 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=4.1
Q ss_pred hhHHHHHhhh
Q psy3835 30 VEKESRMLQL 39 (1659)
Q Consensus 30 ~~~~~~~~~~ 39 (1659)
||-|-+.++.
T Consensus 195 LEaEC~rLr~ 204 (769)
T PF05911_consen 195 LEAECQRLRA 204 (769)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 253
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.24 E-value=0.058 Score=55.64 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3835 420 VARIKKQCEDMNQEKNTALRER 441 (1659)
Q Consensus 420 l~~lk~e~~~l~~~~~~l~~ei 441 (1659)
+.+.+.+.+.++..+..+..++
T Consensus 12 LK~~~~e~dsle~~v~~LEreL 33 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLEREL 33 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHH
Confidence 3333333333333333333333
No 254
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.21 E-value=0.00077 Score=77.82 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=55.5
Q ss_pred CceEEEEec--CCCcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEEecCC
Q psy3835 1140 PLGIQIQCL--DSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211 (1659)
Q Consensus 1140 ~lG~sl~~~--~~~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 1211 (1659)
.+|++.... ...|+.|..+.++++|+++||++||.|++|||.++.++........-...+..+.|.|.|++.
T Consensus 178 ~lgi~p~~~~g~~~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~~~~~~~l~~~~~~~~v~l~V~R~G~ 251 (259)
T TIGR01713 178 YIRLSPVMKNDKLEGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDPEQAFQALQMLREETNLTLTVERDGQ 251 (259)
T ss_pred eEeEEEEEeCCceeEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCeEEEEEEECCE
Confidence 445554322 346999999999999999999999999999999999876543332222346789999999886
No 255
>KOG0249|consensus
Probab=97.18 E-value=0.2 Score=62.50 Aligned_cols=46 Identities=9% Similarity=0.081 Sum_probs=25.8
Q ss_pred CCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy3835 362 QPESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHS 407 (1659)
Q Consensus 362 ~e~~~~~~~~~~l~~~~~~le~~le~l~~e~~~l~~~~~el~~~l~ 407 (1659)
.+-...+.-.++++.++..-...+-.+.+.+..++.+++-.+..+.
T Consensus 84 re~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~ 129 (916)
T KOG0249|consen 84 RESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQ 129 (916)
T ss_pred CCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhH
Confidence 3344444555566666665555555666666666666655555443
No 256
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.18 E-value=0.00089 Score=86.46 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=58.7
Q ss_pred CCceEEEEecCCCcEEEEEeCCCChhhhc-CCCCCCEEEeeCC-----eecCCCCHHHHHHHHHhC-CCeEEEEEEec
Q psy3835 1139 EPLGIQIQCLDSGGVFVSTVSEHSLASQV-GLQVGDQLLEVCG-----INMRSATYQLAASVLRQC-GNSITMLVQYS 1209 (1659)
Q Consensus 1139 ~~lG~sl~~~~~~gv~I~~V~~gs~A~~~-GL~~GD~Il~VNg-----~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~ 1209 (1659)
.|+|+.+... +++++|..|.|||||+++ ||++||.|++||| .++.+++..+++.+++.. |..|+|+|.|.
T Consensus 244 ~GIGa~l~~~-~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 244 EGIGAVLQMD-DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred eEEEEEEEEe-CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 4778877654 457999999999999998 7999999999994 366788889999999864 77899999874
No 257
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.16 E-value=1 Score=57.93 Aligned_cols=28 Identities=11% Similarity=0.070 Sum_probs=13.1
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 286 TQTMPLYVRQHNETVRRGDHTLKELEYY 313 (1659)
Q Consensus 286 ~~Ele~L~~q~~E~~~rl~~le~El~~l 313 (1659)
..++..|+.++.++...++.+..++..+
T Consensus 108 ~~e~a~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 108 SSELAVLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544444444444444433
No 258
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=97.15 E-value=0.00054 Score=59.55 Aligned_cols=53 Identities=34% Similarity=0.541 Sum_probs=43.6
Q ss_pred cceeeeccccCCCCCccccccccCCcEEEEecCCCCCCCCcEEEEEeccCCCcccccCcCChh
Q psy3835 1332 SFYMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKY 1394 (1659)
Q Consensus 1332 ~~yvra~f~y~~~~~~~~~L~f~~gdil~v~~t~~~~~~~~W~a~~v~~~~~~~~~GlIPs~~ 1394 (1659)
..+++|+++|.+...+ .|+|++||++.|++. ...+||.++..+ ...|+||...
T Consensus 2 ~~~~~a~~~~~~~~~~--~l~~~~Gd~v~v~~~---~~~~w~~~~~~~-----~~~G~vP~~~ 54 (58)
T smart00326 2 GPQVRALYDYTAQDPD--ELSFKKGDIITVLEK---SDDGWWKGRLGR-----GKEGLFPSNY 54 (58)
T ss_pred CcEEEEeeeeCCCCCC--CCCCCCCCEEEEEEc---CCCCeEEEEeCC-----CCEEEEchHH
Confidence 4578999999997655 899999999999984 367899987665 3589999875
No 259
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.15 E-value=0.00075 Score=87.17 Aligned_cols=68 Identities=24% Similarity=0.320 Sum_probs=56.8
Q ss_pred CCcCeEe---cCceEEEEeCCCChhhhcCCCCCCCEEEEeC--C---cccCCcccHHHHHHHHhcCC-CeEEEEEEcc
Q psy3835 823 YDHGLTL---ESGLYICKISPGSLAAKEGSLAVGDRVLSIN--N---RTVDGLSSAREGMALLSDSP-DVLTITTLKP 891 (1659)
Q Consensus 823 ~~lG~~~---~~gi~I~~v~~gs~A~~~g~L~~GD~Il~in--g---~~v~~~~~~~ea~~~l~~~~-~~v~l~v~r~ 891 (1659)
.|+|+.+ .++++|..|.|||||+++++|++||+|++|| | .++.+ ++.++++.+|+... ..|+|+|.|.
T Consensus 244 ~GIGa~l~~~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g-~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 244 EGIGAVLQMDDDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIG-WRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred eEEEEEEEEeCCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCccccccc-CCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 4667666 3568999999999999987799999999999 4 35667 88999999999765 6889999874
No 260
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.14 E-value=0.089 Score=54.32 Aligned_cols=33 Identities=9% Similarity=0.239 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 433 EKNTALRERNGLKQQCTAAIRQWDIALRERNEY 465 (1659)
Q Consensus 433 ~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l 465 (1659)
++.....+...++..+..++..++..+.....+
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~ 43 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECL 43 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHH
Confidence 333333333444444443333333333333333
No 261
>KOG0982|consensus
Probab=97.13 E-value=0.98 Score=53.60 Aligned_cols=48 Identities=10% Similarity=-0.000 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 413 LELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALR 460 (1659)
Q Consensus 413 le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~ 460 (1659)
+.+++.+..++...++.+....+.+..+..++.++++.+..++...++
T Consensus 306 ~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~ 353 (502)
T KOG0982|consen 306 DQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQK 353 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333333344433333333333
No 262
>KOG2199|consensus
Probab=97.06 E-value=0.00024 Score=81.99 Aligned_cols=54 Identities=24% Similarity=0.443 Sum_probs=43.8
Q ss_pred cceeeeccccCCCCCccccccccCCcEEEEecCCCCCCCCcEEEEEeccCCCcccccCcCChhHH
Q psy3835 1332 SFYMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYKV 1396 (1659)
Q Consensus 1332 ~~yvra~f~y~~~~~~~~~L~f~~gdil~v~~t~~~~~~~~W~a~~v~~~~~~~~~GlIPs~~~~ 1396 (1659)
.--|||++|+....++ +|+|++|||++|+|. -+++||.... ....||.||....
T Consensus 215 ~rkVRALYDFeAaE~n--ELsFkaGdIItVLd~---s~~~WWKG~~------~~~~GlFPsnfVT 268 (462)
T KOG2199|consen 215 VRKVRALYDFEAAEDN--ELSFKAGDIITVLDD---SDPNWWKGEN------HRGIGLFPSNFVT 268 (462)
T ss_pred chhhhhhhcccccCCC--ccceecCcEEEEccc---CCcchhcccc------CCcccccchhhhh
Confidence 3459999999998877 999999999999994 6788996532 1459999998654
No 263
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=97.04 E-value=0.00069 Score=57.96 Aligned_cols=52 Identities=35% Similarity=0.629 Sum_probs=42.4
Q ss_pred eeeeccccCCCCCccccccccCCcEEEEecCCCCCCCCcEEEEEeccCCCcccccCcCChhH
Q psy3835 1334 YMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYK 1395 (1659)
Q Consensus 1334 yvra~f~y~~~~~~~~~L~f~~gdil~v~~t~~~~~~~~W~a~~v~~~~~~~~~GlIPs~~~ 1395 (1659)
+++|+++|.+..++ +|+|++||++.|+.. ...+||+++..+. ..|+||....
T Consensus 1 ~~~a~~~~~~~~~~--~l~~~~Gd~v~v~~~---~~~~w~~~~~~~~-----~~G~vP~~~v 52 (54)
T cd00174 1 YVRALYDYDARDPD--ELSFKKGDIIEVLEK---SDDGWWEGRLLGG-----KRGLFPSNYV 52 (54)
T ss_pred CEEEEEeeCCCCCC--CCCCCCCCEEEEEEc---CCCCeEEEEECCC-----CEEEEccccC
Confidence 46889999998876 999999999999985 4678999976432 5899998753
No 264
>PLN03188 kinesin-12 family protein; Provisional
Probab=97.02 E-value=2.8 Score=56.94 Aligned_cols=20 Identities=35% Similarity=0.410 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3835 646 EANQEIDRLRKHTDKLQAEL 665 (1659)
Q Consensus 646 ~~~~Ele~lr~~l~~l~~el 665 (1659)
.+++|-+.+.+++++|+++.
T Consensus 1222 ~~eqe~~~~~k~~~klkrkh 1241 (1320)
T PLN03188 1222 DAEQEAAEAYKQIDKLKRKH 1241 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777
No 265
>KOG1853|consensus
Probab=97.02 E-value=0.19 Score=55.07 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3835 297 NETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELR 356 (1659)
Q Consensus 297 ~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk 356 (1659)
-++...+.+...|+..++.-..++...++ .++.+++..++++....++|..+.+.++
T Consensus 23 ~~ykq~f~~~reEl~EFQegSrE~Eaele---sqL~q~etrnrdl~t~nqrl~~E~e~~K 79 (333)
T KOG1853|consen 23 HEYKQHFLQMREELNEFQEGSREIEAELE---SQLDQLETRNRDLETRNQRLTTEQERNK 79 (333)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777766666655554443 4555555566666666666655555554
No 266
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.00 E-value=0.28 Score=61.72 Aligned_cols=38 Identities=26% Similarity=0.121 Sum_probs=28.8
Q ss_pred EEEeCCcccCCCCCHHHHHHHhhc-CCCeEEEEEecCCCc
Q psy3835 232 VLSINNRTVDGLSSAREGMALLSD-SPDVLTITTLKPTSL 270 (1659)
Q Consensus 232 i~~in~~~~~~~~s~~e~~~~l~~-~~~~~~i~~~k~~~~ 270 (1659)
...|||+.|--. +.++..+.|-. .|.--...+|+|..+
T Consensus 103 r~~INg~~Vs~~-~L~~l~~~Li~IHGQh~~q~Ll~~~~~ 141 (557)
T COG0497 103 RAFINGQPVSLA-QLKELGQLLIDIHGQHEHQSLLKPELQ 141 (557)
T ss_pred eEEECCEEeeHH-HHHHHHHhhheeeccchHHHhcChHHH
Confidence 467999987664 58888887776 477777888888874
No 267
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=2.1 Score=55.42 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3835 310 LEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRS 357 (1659)
Q Consensus 310 l~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk~ 357 (1659)
-.+++..+..+.+.+..+..+.+.++.++...+........+++++..
T Consensus 552 ~~r~rq~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e~~se~e~~l~ 599 (984)
T COG4717 552 QSRIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEALD 599 (984)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 345566666777777777777777777777777777777777777653
No 268
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=96.94 E-value=0.25 Score=62.58 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=22.4
Q ss_pred EEecCCCcCCCCCCCCccccchhhccchHHHHHHHHH
Q psy3835 263 TTLKPTSLGEHSPRVHRKSVNSSTQTMPLYVRQHNET 299 (1659)
Q Consensus 263 ~~~k~~~~~~~~~~~~~~~i~~~~~Ele~L~~q~~E~ 299 (1659)
+.+.|.++..+...--.+.|.++..|-+.++-.....
T Consensus 281 ~~~q~~~la~~Ee~~a~E~i~e~tSE~kdlni~~~d~ 317 (861)
T PF15254_consen 281 TQSQPAFLASNEEKCAEEQIEEATSEGKDLNIQVRDA 317 (861)
T ss_pred cccCccccccccccchHHHhhhccchhhhcccccCch
Confidence 3444444444445556778888888877777555443
No 269
>KOG2129|consensus
Probab=96.93 E-value=1.4 Score=51.97 Aligned_cols=27 Identities=11% Similarity=-0.003 Sum_probs=13.9
Q ss_pred chhhccchHHHHHHHHHHHHHHHHHHH
Q psy3835 283 NSSTQTMPLYVRQHNETVRRGDHTLKE 309 (1659)
Q Consensus 283 ~~~~~Ele~L~~q~~E~~~rl~~le~E 309 (1659)
....++-+-|+-++..+.-+|+.++.+
T Consensus 53 ~slsq~Nkvlk~elet~k~kcki~qee 79 (552)
T KOG2129|consen 53 SSLSQRNKVLKGELETLKGKCKIMQEE 79 (552)
T ss_pred HHHHhhhhhhhhhHHhhhhHHHHHHhc
Confidence 333444444455555555566665555
No 270
>KOG3938|consensus
Probab=96.93 E-value=0.0014 Score=71.86 Aligned_cols=82 Identities=23% Similarity=0.399 Sum_probs=73.5
Q ss_pred CCCeEEEEEecCCCCceEEEEecCCCcEEEEEeCCCChhhhcC-CCCCCEEEeeCCeecCCCCHHHHHHHHHhC--CCeE
Q psy3835 1126 PGELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQC--GNSI 1202 (1659)
Q Consensus 1126 ~~~~~~v~l~k~~~~lG~sl~~~~~~gv~I~~V~~gs~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~--~~~v 1202 (1659)
.+....|.+.|+...||++|...+.+-.||..|.+||.-++-- +++||.|-+|||.++.++.|-++..+|+.. |...
T Consensus 124 kGq~kEv~v~KsedalGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~f 203 (334)
T KOG3938|consen 124 KGQAKEVEVVKSEDALGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETF 203 (334)
T ss_pred cCcceeEEEEecccccceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCee
Confidence 4678899999999999999998888889999999999999987 999999999999999999999999999986 4555
Q ss_pred EEEEE
Q psy3835 1203 TMLVQ 1207 (1659)
Q Consensus 1203 ~l~v~ 1207 (1659)
+|.+.
T Consensus 204 tlrLi 208 (334)
T KOG3938|consen 204 TLRLI 208 (334)
T ss_pred EEEee
Confidence 55554
No 271
>KOG4438|consensus
Probab=96.92 E-value=1.5 Score=52.36 Aligned_cols=28 Identities=32% Similarity=0.156 Sum_probs=14.6
Q ss_pred CHHHHHHHhhcCC-CeEEEEEecCCCcCC
Q psy3835 245 SAREGMALLSDSP-DVLTITTLKPTSLGE 272 (1659)
Q Consensus 245 s~~e~~~~l~~~~-~~~~i~~~k~~~~~~ 272 (1659)
+..|++.-|++++ -..+=.+.+|++.|.
T Consensus 10 ~~aEIv~~l~~~~i~~at~ei~~PTs~~~ 38 (446)
T KOG4438|consen 10 SVAEIVICLKDAQIASATEEILTPTSDYV 38 (446)
T ss_pred CHHHHHHHHHhcCcccchhhccCCCcccc
Confidence 3566666666642 222223566766553
No 272
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.90 E-value=4.3 Score=57.26 Aligned_cols=8 Identities=0% Similarity=-0.276 Sum_probs=4.2
Q ss_pred CCCCCccc
Q psy3835 274 SPRVHRKS 281 (1659)
Q Consensus 274 ~~~~~~~~ 281 (1659)
|+..|...
T Consensus 174 g~~~y~~~ 181 (1042)
T TIGR00618 174 PLDQYTQL 181 (1042)
T ss_pred CcHHHHHH
Confidence 55555443
No 273
>KOG3834|consensus
Probab=96.89 E-value=0.0073 Score=71.21 Aligned_cols=146 Identities=22% Similarity=0.198 Sum_probs=98.9
Q ss_pred EEecCCCcEEEEEeCCCChhhhcCC-CCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEEecCCccccccCCCCCC
Q psy3835 1145 IQCLDSGGVFVSTVSEHSLASQVGL-QVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSS 1223 (1659)
Q Consensus 1145 l~~~~~~gv~I~~V~~gs~A~~~GL-~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~~~~~~~~~~~ 1223 (1659)
+.+++..|.-|..|..+|+|.++|| -.-|.|++|||..+.. ..+....+++.....|+|+|.-.
T Consensus 9 ~p~ggteg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk~~sekVkltv~n~-------------- 73 (462)
T KOG3834|consen 9 IPGGGTEGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLKANSEKVKLTVYNS-------------- 73 (462)
T ss_pred cccCCceeEEEEEeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHHhcccceEEEEEec--------------
Confidence 3444566888999999999999995 5679999999999865 34445566666555699988621
Q ss_pred CcccccCCCCCCCCeEEEEecCCcCc---cCeEEecCC-----CcceEEEEeCCCChhhhcCCC-CCCEEEEE-CCeeCC
Q psy3835 1224 AENESVSGRGSGEPRFLMIETRKCSN---LGISLVGGN-----AVGIYVHSVQSGSLGYSAGLR-TGDRILEY-NGTDLR 1293 (1659)
Q Consensus 1224 ~~~~~~~~~~~~~~~~v~l~k~~~~~---lGi~l~gg~-----~~gi~V~~V~~gs~A~~~gL~-~GD~Il~V-Ng~~v~ 1293 (1659)
.....|.+.|......+ ||++|.--. ..---|-+|.+.|||+.+||+ -+|-|+-+ |.+--.
T Consensus 74 ---------kt~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~~ 144 (462)
T KOG3834|consen 74 ---------KTQEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMHE 144 (462)
T ss_pred ---------ccceeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhhccc
Confidence 12345777777665555 888876321 122356789999999999999 78999888 554222
Q ss_pred CcCHHHHHHH-HcCCCCeEEEEEEe
Q psy3835 1294 AATAEEAAYE-LAKPADKVTVLAQY 1317 (1659)
Q Consensus 1294 ~~t~~~~~~~-l~~~~~~v~L~v~r 1317 (1659)
.++-..+ ..+-++++.|.|..
T Consensus 145 ---~eDl~~lIeshe~kpLklyVYN 166 (462)
T KOG3834|consen 145 ---EEDLFTLIESHEGKPLKLYVYN 166 (462)
T ss_pred ---hHHHHHHHHhccCCCcceeEee
Confidence 1121222 23466777777654
No 274
>KOG4438|consensus
Probab=96.87 E-value=1.7 Score=52.06 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=38.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3835 287 QTMPLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELR 356 (1659)
Q Consensus 287 ~Ele~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk 356 (1659)
.+++.|-+.++..-.++.++.+++.++.....+-...+..++++++++...+.+.......+..+....+
T Consensus 138 ~q~eslle~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k 207 (446)
T KOG4438|consen 138 QQLESLLELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMK 207 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555666666666666555555555555555565555555555555555555544444
No 275
>PRK10898 serine endoprotease; Provisional
Probab=96.87 E-value=0.0019 Score=78.67 Aligned_cols=63 Identities=24% Similarity=0.276 Sum_probs=51.5
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEEecCCc
Q psy3835 1150 SGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDK 1212 (1659)
Q Consensus 1150 ~~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~ 1212 (1659)
..|++|..|.++|||+++||++||.|++|||.++.++........-...+..+.|.|.|++..
T Consensus 278 ~~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~~l~~~l~~~~~g~~v~l~v~R~g~~ 340 (353)
T PRK10898 278 LQGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQ 340 (353)
T ss_pred CCeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 369999999999999999999999999999999988755432222224678999999998753
No 276
>PRK10898 serine endoprotease; Provisional
Probab=96.85 E-value=0.0022 Score=78.00 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=50.9
Q ss_pred cceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCeEEEEEEeCcc
Q psy3835 1260 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVE 1320 (1659)
Q Consensus 1260 ~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~r~~~ 1320 (1659)
.|++|..|.++|||+++||++||+|++|||+++.++............++.+.|++.|+..
T Consensus 279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~~l~~~l~~~~~g~~v~l~v~R~g~ 339 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISALETMDQVAEIRPGSVIPVVVMRDDK 339 (353)
T ss_pred CeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 5999999999999999999999999999999998876554333333577889999998753
No 277
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.81 E-value=0.12 Score=57.68 Aligned_cols=51 Identities=14% Similarity=0.209 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 378 YMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCE 428 (1659)
Q Consensus 378 ~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~ 428 (1659)
+.+++.+++.|+++...-+=.++.++..+...+.+.+.-..++..++.+..
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq 70 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQ 70 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 344444444444444444444444444444444444444444444444333
No 278
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=96.80 E-value=0.0019 Score=78.55 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=50.8
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEEecCC
Q psy3835 1150 SGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211 (1659)
Q Consensus 1150 ~~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 1211 (1659)
..|++|..|.++|||+++||++||.|++|||.++.++........-...+..+.|.|.|++.
T Consensus 277 ~~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~dl~~~l~~~~~g~~v~l~v~R~g~ 338 (351)
T TIGR02038 277 LRGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGAEELMDRIAETRPGSKVMVTVLRQGK 338 (351)
T ss_pred cccceEeecCCCChHHHCCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 36899999999999999999999999999999999875543222222468899999999875
No 279
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=96.79 E-value=0.0022 Score=78.07 Aligned_cols=61 Identities=26% Similarity=0.339 Sum_probs=51.2
Q ss_pred cceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCeEEEEEEeCcc
Q psy3835 1260 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVE 1320 (1659)
Q Consensus 1260 ~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~r~~~ 1320 (1659)
.|++|..|.++|||+++||++||+|++|||+++.++........-...++.+.|+|.|+..
T Consensus 278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~dl~~~l~~~~~g~~v~l~v~R~g~ 338 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGAEELMDRIAETRPGSKVMVTVLRQGK 338 (351)
T ss_pred ccceEeecCCCChHHHCCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 5899999999999999999999999999999999876654433223578899999998753
No 280
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.78 E-value=0.34 Score=63.18 Aligned_cols=69 Identities=12% Similarity=0.149 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy3835 522 HKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGE 590 (1659)
Q Consensus 522 ~~el~~L~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e 590 (1659)
.+.+.....++.++..++..+...+.-.-.++..++.++..+++-....+....+..+.++.++.++..
T Consensus 272 ~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~ 340 (563)
T TIGR00634 272 AEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQ 340 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444433334445555555555555555555555555444444444433
No 281
>KOG0992|consensus
Probab=96.76 E-value=2.2 Score=51.79 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=19.6
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 286 TQTMPLYVRQHNETVRRGDHTLKELEYYRG 315 (1659)
Q Consensus 286 ~~Ele~L~~q~~E~~~rl~~le~El~~l~~ 315 (1659)
++.+.+|.-++.++-.++..+.+.+..+..
T Consensus 59 ~~ql~~lr~~~~~~~~~l~~vt~~~~ql~k 88 (613)
T KOG0992|consen 59 SEQLCELRSQCNELTTKLSTVTQGLQQLQK 88 (613)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhH
Confidence 456667777777777777766666555543
No 282
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.72 E-value=0.27 Score=61.91 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH
Q psy3835 559 QIETLKREIASALHDRDKALKECND 583 (1659)
Q Consensus 559 ele~Lk~ei~~l~~~~~~aieE~e~ 583 (1659)
++..++.++..+......+...++.
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444443
No 283
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.71 E-value=0.16 Score=56.66 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3835 578 LKECNDLRERFGEFTA 593 (1659)
Q Consensus 578 ieE~e~l~er~~e~~~ 593 (1659)
-..|++|+++|+....
T Consensus 161 ~sk~e~L~ekynkeve 176 (307)
T PF10481_consen 161 DSKYEELQEKYNKEVE 176 (307)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3567777776665544
No 284
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.70 E-value=0.11 Score=70.46 Aligned_cols=17 Identities=6% Similarity=0.284 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3835 578 LKECNDLRERFGEFTAA 594 (1659)
Q Consensus 578 ieE~e~l~er~~e~~~~ 594 (1659)
..+++..++-|+.+...
T Consensus 382 ~Re~~~~~~~Y~~ll~r 398 (754)
T TIGR01005 382 QRDAAAKRQLYESYLTN 398 (754)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 285
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.70 E-value=0.29 Score=63.09 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 376 QHYMSALNKYETIKDEYDALRKRFDDLI 403 (1659)
Q Consensus 376 ~~~~~le~~le~l~~e~~~l~~~~~el~ 403 (1659)
+.+..+..++...+.++...+.++..++
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~ 231 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDALK 231 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 286
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.69 E-value=0.24 Score=62.30 Aligned_cols=21 Identities=5% Similarity=-0.004 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3835 381 ALNKYETIKDEYDALRKRFDD 401 (1659)
Q Consensus 381 le~~le~l~~e~~~l~~~~~e 401 (1659)
+..++..++.++..++.+...
T Consensus 79 ~~~~l~~l~~~~~~l~a~~~~ 99 (423)
T TIGR01843 79 VEADAAELESQVLRLEAEVAR 99 (423)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 334444455555444444443
No 287
>KOG0249|consensus
Probab=96.67 E-value=0.48 Score=59.34 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=7.0
Q ss_pred CcCChhHHHHHHH
Q psy3835 1389 IIPSKYKVEEELL 1401 (1659)
Q Consensus 1389 lIPs~~~~e~~~~ 1401 (1659)
-||.+.-+-++.+
T Consensus 808 qIptqn~qaRq~L 820 (916)
T KOG0249|consen 808 QIPTQNTQARQLL 820 (916)
T ss_pred cCCCcchHHHHHH
Confidence 3666665544433
No 288
>KOG0982|consensus
Probab=96.65 E-value=2.3 Score=50.62 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 495 KDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEM 544 (1659)
Q Consensus 495 ~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~le~ 544 (1659)
..|+.+..++...++.+..+...+.+.+++....++=+.++..++..++.
T Consensus 339 d~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~ 388 (502)
T KOG0982|consen 339 DLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRR 388 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333334444433333
No 289
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=96.57 E-value=0.79 Score=50.24 Aligned_cols=28 Identities=29% Similarity=0.299 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3835 329 QESSSLRSKYSDLISDKQRLDRELLELR 356 (1659)
Q Consensus 329 ~e~~~l~~e~~el~~e~~~Le~el~~lk 356 (1659)
.+++.++.++..++..+..++.++....
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ql~~ke 33 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQLRQKE 33 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554
No 290
>PRK10869 recombination and repair protein; Provisional
Probab=96.57 E-value=0.57 Score=60.66 Aligned_cols=63 Identities=6% Similarity=-0.056 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy3835 528 LSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGE 590 (1659)
Q Consensus 528 L~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e 590 (1659)
+...+.++...+..+...+.-...+++.++.++..+..=....|....+.+.-++.++++++.
T Consensus 273 ~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~ 335 (553)
T PRK10869 273 ALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQ 335 (553)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 333333333333333333332333445555555555554445554444554444444444333
No 291
>KOG4407|consensus
Probab=96.56 E-value=0.0027 Score=82.29 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=98.6
Q ss_pred eEEEEEecCCCCceEEEEec---------------------------CCCcEEEEEeCCCChhhhcCCCCCCEEEeeCCe
Q psy3835 1129 LRRVHIDKSVEPLGIQIQCL---------------------------DSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGI 1181 (1659)
Q Consensus 1129 ~~~v~l~k~~~~lG~sl~~~---------------------------~~~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~ 1181 (1659)
+..|.+.+.+.||||+|+-- ...-+++..+..++++..+|+..||.|..|||.
T Consensus 47 ~~~V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG~~s~~~v~~itG~ 126 (1973)
T KOG4407|consen 47 KLIVIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSGSSSSVGVAGITGL 126 (1973)
T ss_pred ceEEEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccCcccccceeeeccc
Confidence 35566666689999998642 012366777778888999999999999999998
Q ss_pred ecCCCCHHHHHHHHHhCCCeEEEEEEecCCccccccCCCCCCCcccccCCCCCCCCeEEEEecCCcCccCeEEecCCCcc
Q psy3835 1182 NMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGGNAVG 1261 (1659)
Q Consensus 1182 ~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~k~~~~~lGi~l~gg~~~g 1261 (1659)
.+.+.+ ......++ +..-
T Consensus 127 e~~~~T-S~~~~~vk-------------------------------------------------------------~~eT 144 (1973)
T KOG4407|consen 127 EPTSPT-SLPPYQVK-------------------------------------------------------------AMET 144 (1973)
T ss_pred ccCCCc-cccHHHHh-------------------------------------------------------------hhhh
Confidence 876543 11111111 1125
Q ss_pred eEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCeEEEEEEeC
Q psy3835 1262 IYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYS 1318 (1659)
Q Consensus 1262 i~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~r~ 1318 (1659)
|||..|++.++|.-+.|+.||+++.||..++.++...+++.++++.....+|.|.+.
T Consensus 145 ~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P~ 201 (1973)
T KOG4407|consen 145 IFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVPK 201 (1973)
T ss_pred hhhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhccCCCCCCceeccc
Confidence 789999999999999999999999999999999999999999888887788887764
No 292
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.55 E-value=0.014 Score=65.47 Aligned_cols=164 Identities=15% Similarity=0.078 Sum_probs=88.8
Q ss_pred CCcEEEECCCh---HHHHHHHhhhCCCcccccccceec-----CChHHHHHhcc--CCceEEEEE---eCCeeeeecHHH
Q psy3835 1474 LRPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMH-----CPQAAMEKGLA--DNLFVDYRK---KGAYFECTSVAA 1540 (1659)
Q Consensus 1474 ~RpvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttr-----vs~~~f~~~i~--~~~flE~~~---~~g~~YGts~~~ 1540 (1659)
.+.|+|.||.| +|+.+.|.+.... .+..+ ++++ ..-+.|...+. ...+.+|+. +..++|++....
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~-~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQ-QGRDV-VFTREPGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEV 80 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH-cCCce-eEeeCCCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 35788999998 8999888775422 12111 2222 23345666654 233444433 225667777778
Q ss_pred HHHHHHcCCCeEEEE------cChhH---------HHHHHhc---CCcc-EEEEEecCCHHHHHHHHhhhccccCCCCcc
Q psy3835 1541 VKDACDKNNAHVILD------VSLAG---------VERLHRQ---HVYP-IVLLIKFKSTKQIKEIKEIRDGRYSSLDKV 1601 (1659)
Q Consensus 1541 V~~v~~~~gk~~iLd------i~~~~---------~~~l~~~---~~~p-ivIfI~pps~~~l~~~~~~~~~r~~~~~~~ 1601 (1659)
|...+.+ |+++|+| +..++ ...+... .+.| ++||+..|. +.+.+|+. .|- ..+..
T Consensus 81 i~~~l~~-g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~-~~~~~Rl~---~R~-~~~~~ 154 (205)
T PRK00698 81 IKPALAR-GKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPP-EVGLARIR---ARG-ELDRI 154 (205)
T ss_pred HHHHHHC-CCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCH-HHHHHHHH---hcC-Ccchh
Confidence 8888889 9999998 33332 2233321 1334 778887765 66666665 231 00111
Q ss_pred cHH--HHHHHHHHH-HHHHHHcCCcceEEEeCC-CCHHHHHHHHHHHHHh
Q psy3835 1602 TAK--AAKEMYEHG-LKIECEHKHYISAVIPAG-VNIAYMCTQIQTAVEL 1647 (1659)
Q Consensus 1602 ~~~--~~~~~~~~a-~~~e~~~~~~fd~vi~n~-~~~~~~~~~l~~ii~~ 1647 (1659)
..+ +..+++... ..+... ..++++++|. .+++....++..+|..
T Consensus 155 ~~~~~~~~~~~~~~y~~~~~~--~~~~~~~Id~~~~~e~v~~~i~~~i~~ 202 (205)
T PRK00698 155 EQEGLDFFERVREGYLELAEK--EPERIVVIDASQSLEEVHEDILAVIKA 202 (205)
T ss_pred hhhhHHHHHHHHHHHHHHHHh--CCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 111 122222221 111111 1235555553 5799999999988864
No 293
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.53 E-value=0.37 Score=65.40 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3835 332 SSLRSKYSDLISDKQRLDRELLELR 356 (1659)
Q Consensus 332 ~~l~~e~~el~~e~~~Le~el~~lk 356 (1659)
+-+..++.+++.++...+.++...+
T Consensus 197 ~~L~~ql~~l~~~l~~aE~~l~~fk 221 (754)
T TIGR01005 197 DFLAPEIADLSKQSRDAEAEVAAYR 221 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444
No 294
>KOG4360|consensus
Probab=96.50 E-value=2.5 Score=51.49 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=10.7
Q ss_pred cchhhccchHHHHHHHHHHHHHH
Q psy3835 282 VNSSTQTMPLYVRQHNETVRRGD 304 (1659)
Q Consensus 282 i~~~~~Ele~L~~q~~E~~~rl~ 304 (1659)
.......++-|-.-+.++..-++
T Consensus 57 ~tkt~~d~d~lt~lle~k~~dlE 79 (596)
T KOG4360|consen 57 MTKTYNDIDFLTELLEEKRRDLE 79 (596)
T ss_pred hhccccchHHHHHHHhcccchhH
Confidence 33444455555555554444333
No 295
>KOG0606|consensus
Probab=96.49 E-value=0.0095 Score=77.82 Aligned_cols=78 Identities=23% Similarity=0.271 Sum_probs=68.5
Q ss_pred EEEEecCCCCceEEEEec----CC-----CcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCe
Q psy3835 1131 RVHIDKSVEPLGIQIQCL----DS-----GGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNS 1201 (1659)
Q Consensus 1131 ~v~l~k~~~~lG~sl~~~----~~-----~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~ 1201 (1659)
.|.|.+++.+|||++..- ++ ....|..|.+||||..+||++||.|+.|||..|.++.|.+++.++-..|..
T Consensus 629 pI~i~~~~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~ 708 (1205)
T KOG0606|consen 629 PITIHFSGKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSGNK 708 (1205)
T ss_pred ceeeeccccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHhcCCe
Confidence 488999999999887654 12 247899999999999999999999999999999999999999999998998
Q ss_pred EEEEEEe
Q psy3835 1202 ITMLVQY 1208 (1659)
Q Consensus 1202 v~l~v~r 1208 (1659)
|++.+..
T Consensus 709 v~~~ttp 715 (1205)
T KOG0606|consen 709 VTLRTTP 715 (1205)
T ss_pred eEEEeec
Confidence 8888753
No 296
>PLN02939 transferase, transferring glycosyl groups
Probab=96.49 E-value=2.1 Score=57.59 Aligned_cols=20 Identities=15% Similarity=0.044 Sum_probs=11.0
Q ss_pred HHHHHHcCCCeEEEEcChhHHH
Q psy3835 1541 VKDACDKNNAHVILDVSLAGVE 1562 (1659)
Q Consensus 1541 V~~v~~~~gk~~iLdi~~~~~~ 1562 (1659)
+-+.++. |..||. .+.-|+.
T Consensus 873 qLEAMAy-GtPPVV-s~vGGL~ 892 (977)
T PLN02939 873 QMIAMRY-GSVPIV-RKTGGLN 892 (977)
T ss_pred HHHHHHC-CCCEEE-ecCCCCc
Confidence 4555666 777664 3444543
No 297
>KOG1899|consensus
Probab=96.44 E-value=0.32 Score=59.76 Aligned_cols=64 Identities=22% Similarity=0.222 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy3835 523 KEMEKLSEDLTQAVRKIKTLEMEN-KELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRE 586 (1659)
Q Consensus 523 ~el~~L~~el~ele~ki~~le~el-~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~e 586 (1659)
.++..|++++.+.+.++.++...+ ..+..+-+....+.+.|+..++.+...|.+-...|++++.
T Consensus 238 ~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~~~rd~~lk~a~eslm~ane~kdr~ie~lr~ 302 (861)
T KOG1899|consen 238 GEMAPLREQRSEKNDEEMRLLRTLVQRLMADGEHKSLRDNTLKNALESLMRANEQKDRFIESLRN 302 (861)
T ss_pred chhhhHHHHHhhhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHhhchhhhhHHHHHHH
Confidence 344444444444444444443331 1222222233334456676666666666555555555543
No 298
>PLN02939 transferase, transferring glycosyl groups
Probab=96.43 E-value=3.3 Score=55.73 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3835 295 QHNETVRRGDHTLKELEYYRG 315 (1659)
Q Consensus 295 q~~E~~~rl~~le~El~~l~~ 315 (1659)
++.++...++.+++++..+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~ 149 (977)
T PLN02939 129 QLEDLVGMIQNAEKNILLLNQ 149 (977)
T ss_pred cHHHHHHHHHHHHhhhHhHHH
Confidence 344555666666666555443
No 299
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.42 E-value=8.4 Score=54.40 Aligned_cols=60 Identities=8% Similarity=0.015 Sum_probs=24.3
Q ss_pred CCeEEEEEecCCCcCCC----CCCCCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 257 PDVLTITTLKPTSLGEH----SPRVHRKSVNSSTQTMPLYVRQHNETVRRGDHTLKELEYYRGQH 317 (1659)
Q Consensus 257 ~~~~~i~~~k~~~~~~~----~~~~~~~~i~~~~~Ele~L~~q~~E~~~rl~~le~El~~l~~~l 317 (1659)
.+.++-+++-|..-+.. .+...++.++... -++.+..--..+..+.+.++..++.++..+
T Consensus 140 ~~~F~~~~~l~Qg~~~~fl~a~~~eR~~il~~l~-g~~~y~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (1042)
T TIGR00618 140 YKTFTRVVLLPQGEFAQFLKAKSKEKKELLMNLF-PLDQYTQLALMEFAKKKSLHGKAELLTLRS 203 (1042)
T ss_pred HHHHhhheeecccchHHHHhCCHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445545543321 3333444443333 234443333333344444444444444433
No 300
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.42 E-value=0.29 Score=64.68 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy3835 557 SYQIETLKREIASALHDRDKALKECNDLRE 586 (1659)
Q Consensus 557 ~~ele~Lk~ei~~l~~~~~~aieE~e~l~e 586 (1659)
..+.+.+++-|.+.+....+++++++.++.
T Consensus 684 ~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 684 ESQKRTIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666666666554
No 301
>KOG1103|consensus
Probab=96.41 E-value=2.6 Score=48.40 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 437 ALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQ 473 (1659)
Q Consensus 437 l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~el~ 473 (1659)
++.+.+.|+++++.-..+....+.+.+.++.++.+-.
T Consensus 144 LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk 180 (561)
T KOG1103|consen 144 LEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEK 180 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444333
No 302
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=96.39 E-value=1.9 Score=49.72 Aligned_cols=8 Identities=25% Similarity=0.356 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q psy3835 413 LELAQEEV 420 (1659)
Q Consensus 413 le~leeel 420 (1659)
+..+..++
T Consensus 54 ~~~l~~~l 61 (240)
T PF12795_consen 54 IRELQKEL 61 (240)
T ss_pred HHHHHHHH
Confidence 33333333
No 303
>KOG2070|consensus
Probab=96.36 E-value=0.0036 Score=74.04 Aligned_cols=59 Identities=31% Similarity=0.514 Sum_probs=48.8
Q ss_pred CCCCcceeeeccccCCCCCccccccccCCcEEEEecCCCCCCCCcEEEEEeccCCCcccccCcCChhHHH
Q psy3835 1328 KPGDSFYMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYKVE 1397 (1659)
Q Consensus 1328 ~~~~~~yvra~f~y~~~~~~~~~L~f~~gdil~v~~t~~~~~~~~W~a~~v~~~~~~~~~GlIPs~~~~e 1397 (1659)
.++..+-|||.|++...+.+ +|+|.+|||++|+- ..+.|||-...- +..|+.||.+..|
T Consensus 13 ~s~~pLvvrAkf~F~gsNnD--ELsf~KgDvItVTq---~eeGGWWEGTln------g~TGWFPsnYV~e 71 (661)
T KOG2070|consen 13 NSNNPLVVRAKFNFQGSNND--ELSFSKGDVITVTQ---VEEGGWWEGTLN------GRTGWFPSNYVRE 71 (661)
T ss_pred CCCCceEEEEEeecccCCCc--eeccccCCEEEEEE---eccCcceecccc------CccCccchHHHHH
Confidence 34567889999999998877 99999999999998 578899966543 3589999988655
No 304
>KOG0243|consensus
Probab=96.35 E-value=6.9 Score=52.60 Aligned_cols=80 Identities=15% Similarity=0.105 Sum_probs=35.8
Q ss_pred CCCCCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 274 SPRVHRKSVNSSTQTMPLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELL 353 (1659)
Q Consensus 274 ~~~~~~~~i~~~~~Ele~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~ 353 (1659)
|=++..+.-...+.|.+...++++++..+++.+++++..++..+.........++.+...++.++..-..++..++.++.
T Consensus 428 Gvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~ 507 (1041)
T KOG0243|consen 428 GVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQ 507 (1041)
T ss_pred ceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334455555556666666666666655555555422222333344444444333333333333333333
No 305
>KOG1421|consensus
Probab=96.34 E-value=0.028 Score=69.38 Aligned_cols=145 Identities=21% Similarity=0.178 Sum_probs=92.7
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHH-hCCCeEEEEEEecCCccccccC----CCCCCCc
Q psy3835 1151 GGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLR-QCGNSITMLVQYSPDKYHELEG----SGSSSAE 1225 (1659)
Q Consensus 1151 ~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~-~~~~~v~l~v~r~~~~~~~~~~----~~~~~~~ 1225 (1659)
+-++|..|.++|||.+ -|.+||.+++||++.+.++ ..+.++|- ..|..+.|+|+|.+.... +.. .++-.
T Consensus 303 gmLvV~~vL~~gpa~k-~Le~GDillavN~t~l~df--~~l~~iLDegvgk~l~LtI~Rggqele-l~vtvqdlh~it-- 376 (955)
T KOG1421|consen 303 GMLVVETVLPEGPAEK-KLEPGDILLAVNSTCLNDF--EALEQILDEGVGKNLELTIQRGGQELE-LTVTVQDLHGIT-- 376 (955)
T ss_pred eeEEEEEeccCCchhh-ccCCCcEEEEEcceehHHH--HHHHHHHhhccCceEEEEEEeCCEEEE-EEEEeccccCCC--
Confidence 4578889999999986 4999999999998777543 34445554 358899999999987433 111 11111
Q ss_pred ccccCCCCCCCCeEEEEecCCcC-------ccCeEEecCCCcceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHH
Q psy3835 1226 NESVSGRGSGEPRFLMIETRKCS-------NLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAE 1298 (1659)
Q Consensus 1226 ~~~~~~~~~~~~~~v~l~k~~~~-------~lGi~l~gg~~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~ 1298 (1659)
..|++.+.--.-. .+++- ...|+||++-. |+++..+++. |-.|.+||+.++-++..+
T Consensus 377 ----------p~R~levcGav~hdlsyq~ar~y~l----P~~GvyVa~~~-gsf~~~~~~y-~~ii~~vanK~tPdLdaF 440 (955)
T KOG1421|consen 377 ----------PDRFLEVCGAVFHDLSYQLARLYAL----PVEGVYVASPG-GSFRHRGPRY-GQIIDSVANKPTPDLDAF 440 (955)
T ss_pred ----------CceEEEEcceEecCCCHHHHhhccc----ccCcEEEccCC-CCccccCCcc-eEEEEeecCCcCCCHHHH
Confidence 1133222110000 11211 12389999987 9999988888 999999999999888777
Q ss_pred HHHHHHcCCCCeEEEEEEe
Q psy3835 1299 EAAYELAKPADKVTVLAQY 1317 (1659)
Q Consensus 1299 ~~~~~l~~~~~~v~L~v~r 1317 (1659)
-.+..-...+..|.+....
T Consensus 441 idvlk~L~dg~rV~vry~h 459 (955)
T KOG1421|consen 441 IDVLKELPDGARVPVRYHH 459 (955)
T ss_pred HHHHHhccCCCeeeEEEEE
Confidence 4332222344555554433
No 306
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=96.31 E-value=1.3 Score=48.53 Aligned_cols=13 Identities=31% Similarity=0.577 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q psy3835 556 LSYQIETLKREIA 568 (1659)
Q Consensus 556 l~~ele~Lk~ei~ 568 (1659)
+..+++.|+.+|.
T Consensus 136 l~~e~erL~aeL~ 148 (202)
T PF06818_consen 136 LRREVERLRAELQ 148 (202)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 307
>KOG4226|consensus
Probab=96.22 E-value=0.0022 Score=70.20 Aligned_cols=54 Identities=28% Similarity=0.498 Sum_probs=43.8
Q ss_pred eeeccccCCCCCccccccccCCcEEEEecCCCCCCCCcEEEEEeccCCCcccccCcCChhHH
Q psy3835 1335 MRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYKV 1396 (1659)
Q Consensus 1335 vra~f~y~~~~~~~~~L~f~~gdil~v~~t~~~~~~~~W~a~~v~~~~~~~~~GlIPs~~~~ 1396 (1659)
|.|+++++...+. +|+|.+||.|.|+|. +-.|++||.|+... +.+||+|-.+..
T Consensus 194 VvaLYsFsssnde--ELsFeKGerleivd~-Pe~DPdWwkarn~~-----G~vGLVPrNYv~ 247 (379)
T KOG4226|consen 194 VVALYSFSSSNDE--ELSFEKGERLEIVDK-PENDPDWWKARNAR-----GQVGLVPRNYVV 247 (379)
T ss_pred EEEEecccCCChh--hcccccCceeEeccC-CCCCchHHhhcccC-----CccceeecceEE
Confidence 5567777777766 999999999999995 67899999997542 469999988654
No 308
>KOG4360|consensus
Probab=96.19 E-value=1.4 Score=53.46 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 574 RDKALKECNDLRERFGEFTAAKEECQRE 601 (1659)
Q Consensus 574 ~~~aieE~e~l~er~~e~~~~~~e~q~e 601 (1659)
......|.+++..+|.+......+.+.+
T Consensus 270 ~~ql~aE~~EleDkyAE~m~~~~EaeeE 297 (596)
T KOG4360|consen 270 QRQLTAELEELEDKYAECMQMLHEAEEE 297 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444554444443333333
No 309
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.19 E-value=0.65 Score=48.23 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy3835 553 KKTLSYQIETLKREIASALHDRDKALKE 580 (1659)
Q Consensus 553 ~~~l~~ele~Lk~ei~~l~~~~~~aieE 580 (1659)
...++.++..++..+..+...|.=+-..
T Consensus 100 k~~le~e~~~~~~r~~dL~~QN~lLh~Q 127 (132)
T PF07926_consen 100 KEQLEKELSELEQRIEDLNEQNKLLHDQ 127 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333
No 310
>KOG1899|consensus
Probab=96.18 E-value=0.6 Score=57.48 Aligned_cols=25 Identities=8% Similarity=0.210 Sum_probs=14.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3835 570 ALHDRDKALKECNDLRERFGEFTAA 594 (1659)
Q Consensus 570 l~~~~~~aieE~e~l~er~~e~~~~ 594 (1659)
...+.+.-++++...-.+|......
T Consensus 289 ane~kdr~ie~lr~~ln~y~k~~~i 313 (861)
T KOG1899|consen 289 ANEQKDRFIESLRNYLNNYDKNAQI 313 (861)
T ss_pred hchhhhhHHHHHHHHhhhhhhhhhh
Confidence 3444555666666666666665554
No 311
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=96.17 E-value=1.8 Score=46.09 Aligned_cols=22 Identities=5% Similarity=-0.082 Sum_probs=8.4
Q ss_pred HHHhhhHHHHHHHHHHHHHHHH
Q psy3835 568 ASALHDRDKALKECNDLRERFG 589 (1659)
Q Consensus 568 ~~l~~~~~~aieE~e~l~er~~ 589 (1659)
..++-+..-+...+..+...++
T Consensus 129 sqi~vvl~yL~~dl~~v~~~~e 150 (159)
T PF05384_consen 129 SQIGVVLNYLSGDLQQVSEQIE 150 (159)
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 3333333333334443333333
No 312
>KOG1853|consensus
Probab=96.13 E-value=2.3 Score=46.90 Aligned_cols=13 Identities=8% Similarity=0.335 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q psy3835 579 KECNDLRERFGEF 591 (1659)
Q Consensus 579 eE~e~l~er~~e~ 591 (1659)
+..+.++.....+
T Consensus 164 esvqRLkdEardl 176 (333)
T KOG1853|consen 164 ESVQRLKDEARDL 176 (333)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444333333
No 313
>KOG3938|consensus
Probab=96.09 E-value=0.0091 Score=65.66 Aligned_cols=81 Identities=17% Similarity=0.228 Sum_probs=66.8
Q ss_pred CeEEEEecCCcCccCeEEecCCCcceEEEEeCCCChhhh-cCCCCCCEEEEECCeeCCCcCHHHHHHHHcC--CCCeEEE
Q psy3835 1237 PRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAK--PADKVTV 1313 (1659)
Q Consensus 1237 ~~~v~l~k~~~~~lGi~l~gg~~~gi~V~~V~~gs~A~~-~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~--~~~~v~L 1313 (1659)
..-|.+.|+.. .||++|......-.||.+|.+||..++ -.+.+||.|-+|||+++-++.|.+++.+|+. .+..++|
T Consensus 127 ~kEv~v~Ksed-alGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftl 205 (334)
T KOG3938|consen 127 AKEVEVVKSED-ALGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTL 205 (334)
T ss_pred ceeEEEEeccc-ccceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEE
Confidence 34567777665 899999865444589999999999999 5689999999999999999999999999986 4667777
Q ss_pred EEEeC
Q psy3835 1314 LAQYS 1318 (1659)
Q Consensus 1314 ~v~r~ 1318 (1659)
.+.-.
T Consensus 206 rLieP 210 (334)
T KOG3938|consen 206 RLIEP 210 (334)
T ss_pred Eeecc
Confidence 76543
No 314
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=96.08 E-value=0.032 Score=53.01 Aligned_cols=69 Identities=20% Similarity=0.330 Sum_probs=45.4
Q ss_pred ceEEEEecCCCcEEEEEeCCC--------ChhhhcC--CCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEEecC
Q psy3835 1141 LGIQIQCLDSGGVFVSTVSEH--------SLASQVG--LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSP 1210 (1659)
Q Consensus 1141 lG~sl~~~~~~gv~I~~V~~g--------s~A~~~G--L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~ 1210 (1659)
||.-+... .++..|..|.+| ||-...| +++||.|++|||+++..-... ...+...++..|.|+|.+.+
T Consensus 3 LGAd~~~~-~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~~~-~~lL~~~agk~V~Ltv~~~~ 80 (88)
T PF14685_consen 3 LGADFSYD-NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADANP-YRLLEGKAGKQVLLTVNRKP 80 (88)
T ss_dssp -SEEEEEE-TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB-H-HHHHHTTTTSEEEEEEE-ST
T ss_pred cceEEEEc-CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCCCH-HHHhcccCCCEEEEEEecCC
Confidence 55555544 578899999986 7888888 789999999999999875443 23444556889999998765
Q ss_pred C
Q psy3835 1211 D 1211 (1659)
Q Consensus 1211 ~ 1211 (1659)
.
T Consensus 81 ~ 81 (88)
T PF14685_consen 81 G 81 (88)
T ss_dssp T
T ss_pred C
Confidence 4
No 315
>PLN03188 kinesin-12 family protein; Provisional
Probab=96.06 E-value=10 Score=51.87 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy3835 517 ERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERF 588 (1659)
Q Consensus 517 e~~~l~~el~~L~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~ 588 (1659)
++.-+.+|...|+.+|.....-+... .++.-++++.++-..-.++....+..++..+-++++.|+.++
T Consensus 1174 er~~~~~enk~l~~qlrdtaeav~aa----gellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh 1241 (1320)
T PLN03188 1174 ERRYLRDENKSLQAQLRDTAEAVQAA----GELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKH 1241 (1320)
T ss_pred HHHHHHHhhHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555544332222211 122223334444444445555555566666666666666666
No 316
>KOG1320|consensus
Probab=96.04 E-value=0.014 Score=71.54 Aligned_cols=158 Identities=20% Similarity=0.175 Sum_probs=91.2
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecC----CCCH--HHHHHHHHhCCCeEEEEEEecCCccccccCCCCCCC
Q psy3835 1151 GGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMR----SATY--QLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSA 1224 (1659)
Q Consensus 1151 ~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~----~~~~--~~~~~~l~~~~~~v~l~v~r~~~~~~~~~~~~~~~~ 1224 (1659)
.|+.|..+.+-+.|... ++.||.|+.++|..+. ..+. ..+..-++-+++.+...|.|.+. +.....+...
T Consensus 287 ~g~~i~~~~qtd~ai~~-~nsg~~ll~~DG~~IgVn~~~~~ri~~~~~iSf~~p~d~vl~~v~r~~e-~~~~lr~~~~-- 362 (473)
T KOG1320|consen 287 TGVLISKINQTDAAINP-GNSGGPLLNLDGEVIGVNTRKVTRIGFSHGISFKIPIDTVLVIVLRLGE-FQISLRPVKP-- 362 (473)
T ss_pred cceeeeeecccchhhhc-ccCCCcEEEecCcEeeeeeeeeEEeeccccceeccCchHhhhhhhhhhh-hceeeccccC--
Confidence 67899999988777654 5899999999999874 1110 00111122334444444444431 1100000000
Q ss_pred cccccCCCCCCCCeEEEEecCCcCccCeEEec-------CCCcceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCH
Q psy3835 1225 ENESVSGRGSGEPRFLMIETRKCSNLGISLVG-------GNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATA 1297 (1659)
Q Consensus 1225 ~~~~~~~~~~~~~~~v~l~k~~~~~lGi~l~g-------g~~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~ 1297 (1659)
..+...+.+.....+.. +|=|.+.+ +...+++|+.|.+|+++..+++.+||+|+.|||+++.++.+
T Consensus 363 ---~~p~~~~~g~~s~~i~~----g~vf~~~~~~~~~~~~~~q~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~~~ 435 (473)
T KOG1320|consen 363 ---LVPVHQYIGLPSYYIFA----GLVFVPLTKSYIFPSGVVQLVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNLKH 435 (473)
T ss_pred ---cccccccCCceeEEEec----ceEEeecCCCccccccceeEEEEEEeccCCCcccccccCCCEEEEECCEEeechHH
Confidence 00011122222222211 11111111 11248999999999999999999999999999999999888
Q ss_pred HHHHHHHcCCCCeEEEEEEeCc
Q psy3835 1298 EEAAYELAKPADKVTVLAQYSV 1319 (1659)
Q Consensus 1298 ~~~~~~l~~~~~~v~L~v~r~~ 1319 (1659)
.-.+.......+.|.++..++.
T Consensus 436 l~~~i~~~~~~~~v~vl~~~~~ 457 (473)
T KOG1320|consen 436 LYELIEECSTEDKVAVLDRRSA 457 (473)
T ss_pred HHHHHHhcCcCceEEEEEecCc
Confidence 7655544445567777666653
No 317
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=96.03 E-value=2.1 Score=45.59 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHH
Q psy3835 501 TEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIE 561 (1659)
Q Consensus 501 kee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~le~el~~l~~e~~~l~~ele 561 (1659)
+-++..+.++-..+...++.+...+..+..-+..++.-+.....-+.-+..++..+...++
T Consensus 90 Q~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e 150 (159)
T PF05384_consen 90 QVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIE 150 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333334444444444444444444444444444444333333333333333333333333
No 318
>PRK10698 phage shock protein PspA; Provisional
Probab=96.00 E-value=2.8 Score=47.55 Aligned_cols=12 Identities=8% Similarity=0.238 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q psy3835 576 KALKECNDLRER 587 (1659)
Q Consensus 576 ~aieE~e~l~er 587 (1659)
....|+..++.+
T Consensus 205 ~ve~ELa~LK~~ 216 (222)
T PRK10698 205 EISEQLAALKAK 216 (222)
T ss_pred hHHHHHHHHHHH
Confidence 345555555543
No 319
>KOG4407|consensus
Probab=95.97 E-value=0.0077 Score=78.30 Aligned_cols=93 Identities=18% Similarity=0.323 Sum_probs=77.1
Q ss_pred CCCCCCCCCEEEEECCEeCCCCChHHHHHHHHhcCCeEEEEEEeCCCCCcceEEEEEeccCCCCcCeEecCceEEEEeCC
Q psy3835 761 NPPSYKVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARSLVTTQLQLNNSYDHGLTLESGLYICKISP 840 (1659)
Q Consensus 761 ~~g~l~~GD~Il~VNg~~~~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~~~~~~~~i~~~~~~~lG~~~~~gi~I~~v~~ 840 (1659)
-..|+-.||+|..|||..+.+.+ ..+...+++. .-+||..|.+
T Consensus 110 ~nsG~~s~~~v~~itG~e~~~~T-S~~~~~vk~~------------------------------------eT~~~~eV~~ 152 (1973)
T KOG4407|consen 110 SNSGSSSSVGVAGITGLEPTSPT-SLPPYQVKAM------------------------------------ETIFIKEVQA 152 (1973)
T ss_pred cccCcccccceeeecccccCCCc-cccHHHHhhh------------------------------------hhhhhhhhcc
Confidence 56789999999999998888876 4444444432 3467999999
Q ss_pred CChhhhcCCCCCCCEEEEeCCcccCCcccHHHHHHHHhcCCCeEEEEEEccC
Q psy3835 841 GSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKPT 892 (1659)
Q Consensus 841 gs~A~~~g~L~~GD~Il~ing~~v~~~~~~~ea~~~l~~~~~~v~l~v~r~~ 892 (1659)
.+||.... |+-||++++||..++.+ .-..+++.++++.+..+.+.|....
T Consensus 153 n~~~~~a~-LQ~~~~V~~v~~q~~A~-i~~s~~~S~~~qt~~~~~~~~~P~~ 202 (1973)
T KOG4407|consen 153 NGPAHYAN-LQTGDRVLMVNNQPIAG-IAYSTIVSMIKQTPAVLTLHVVPKE 202 (1973)
T ss_pred CChhHHHh-hhccceeEEeecCcccc-hhhhhhhhhhccCCCCCCceecccc
Confidence 99999775 99999999999999999 9999999999999988888776554
No 320
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=95.96 E-value=0.042 Score=66.99 Aligned_cols=121 Identities=13% Similarity=0.118 Sum_probs=84.7
Q ss_pred CCCCCCCCCEEEEECCEeCCCCChHHHHHHHHhcCCeEEEEEE-eCCCCCcceEEEEEeccCCCCcCeEecCc-------
Q psy3835 761 NPPSYKVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIR-RRRVGARSLVTTQLQLNNSYDHGLTLESG------- 832 (1659)
Q Consensus 761 ~~g~l~~GD~Il~VNg~~~~~~~~~~~~~~l~~~~~~v~l~v~-R~~~~~~~~~~~~i~~~~~~~lG~~~~~g------- 832 (1659)
...||++||+|++|||.++.+|.. ....+. +..+.++|. |++ ....+++......+||+.+..+
T Consensus 12 e~AGLe~GD~IlsING~~V~Dw~D--~~~~l~--~e~l~L~V~~rdG----e~~~l~Ie~~~dedlG~~f~~~~~d~~~~ 83 (433)
T TIGR03279 12 EELGFEPGDALVSINGVAPRDLID--YQFLCA--DEELELEVLDANG----ESHQIEIEKDLDEDLGLEFTTALFDGLIQ 83 (433)
T ss_pred HHcCCCCCCEEEEECCEECCCHHH--HHHHhc--CCcEEEEEEcCCC----eEEEEEEecCCCCCCcEEeccccCCcccc
Confidence 778999999999999999999954 333332 456888887 442 2235555555567899877432
Q ss_pred -------eEEEEeCCCChhhhcCCCCCCCEEEEe---CCcccCCcccHHHHHHHHhcCCCeEEEEEEccC
Q psy3835 833 -------LYICKISPGSLAAKEGSLAVGDRVLSI---NNRTVDGLSSAREGMALLSDSPDVLTITTLKPT 892 (1659)
Q Consensus 833 -------i~I~~v~~gs~A~~~g~L~~GD~Il~i---ng~~v~~~~~~~ea~~~l~~~~~~v~l~v~r~~ 892 (1659)
.||.+.-||.--.- =++-.|.=|+. |-+.+++ ++-++...+++..=.++.++|.-..
T Consensus 84 C~N~C~FCFidQlP~gmR~sL--Y~KDDDyRLSFL~GnyiTLTN-l~~~d~~RI~~~~lspl~iSVhat~ 150 (433)
T TIGR03279 84 CNNRCPFCFIDQQPPGKRESL--YLKDDDYRLSFLYGSYLTLTN-LPPAEWQRIEQLRLSPLYVSVHATE 150 (433)
T ss_pred cCCcCceEeccCCCCCCcCcc--eeccCcchhhhhccceeeecC-CCHHHHHHHHHcCCCCEEEEEecCC
Confidence 38888877753321 13445554444 6688899 9999999999987788888885544
No 321
>KOG1118|consensus
Probab=95.96 E-value=0.0039 Score=69.91 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=45.2
Q ss_pred CcceeeeccccCCCCCccccccccCCcEEEEecCCCCCCCCcEEEEEeccCCCcccccCcCChh
Q psy3835 1331 DSFYMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKY 1394 (1659)
Q Consensus 1331 ~~~yvra~f~y~~~~~~~~~L~f~~gdil~v~~t~~~~~~~~W~a~~v~~~~~~~~~GlIPs~~ 1394 (1659)
+..++||+||+.|.+.+ +|.|+.|||+.|++ +-|.|||-...++. .|+.|..+
T Consensus 305 ~~p~cralYdFepenEg--EL~fkeGDlI~l~~---QIdenWyeG~~~g~------sG~FPvnY 357 (366)
T KOG1118|consen 305 DQPCCRALYDFEPENEG--ELDFKEGDLITLTN---QIDENWYEGEKHGE------SGMFPVNY 357 (366)
T ss_pred cchhheeeeccCCCCCC--ccCcccCceeeehh---hcCcchhhheecCc------cCccccce
Confidence 56689999999999977 99999999999999 68999997665543 88999865
No 322
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.93 E-value=1.6 Score=55.34 Aligned_cols=8 Identities=25% Similarity=0.326 Sum_probs=3.6
Q ss_pred CeEEEEEe
Q psy3835 258 DVLTITTL 265 (1659)
Q Consensus 258 ~~~~i~~~ 265 (1659)
.+++|++.
T Consensus 132 ~ii~is~~ 139 (444)
T TIGR03017 132 SVISIEFS 139 (444)
T ss_pred eEEEEEEe
Confidence 44444444
No 323
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=95.92 E-value=4.2 Score=46.29 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 432 QEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEY 511 (1659)
Q Consensus 432 ~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el 511 (1659)
+.++.....+++-+.+....+.........+..++..+..|+.++...-..-.+.=+....+...++..+..+..+..++
T Consensus 121 EmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v 200 (239)
T PF05276_consen 121 EMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKV 200 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444433322211111111222333444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 512 SLIMSERDSVHKEMEKLSEDLTQ 534 (1659)
Q Consensus 512 ~~l~~e~~~l~~el~~L~~el~e 534 (1659)
.............|+.+.+++++
T Consensus 201 ~~aK~~Y~~ALrnLE~ISeeIH~ 223 (239)
T PF05276_consen 201 KQAKSRYSEALRNLEQISEEIHE 223 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 324
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.90 E-value=0.82 Score=60.56 Aligned_cols=7 Identities=0% Similarity=0.278 Sum_probs=2.6
Q ss_pred CCeEEEE
Q psy3835 257 PDVLTIT 263 (1659)
Q Consensus 257 ~~~~~i~ 263 (1659)
++++.+.
T Consensus 463 ~e~v~l~ 469 (717)
T PF10168_consen 463 GECVVLP 469 (717)
T ss_pred CcEEEEE
Confidence 3333333
No 325
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=95.88 E-value=0.023 Score=68.80 Aligned_cols=69 Identities=26% Similarity=0.407 Sum_probs=51.5
Q ss_pred cCccCeEEecCCCcceEEEEeC--------CCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcC-CCCeEEEEEEe
Q psy3835 1247 CSNLGISLVGGNAVGIYVHSVQ--------SGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK-PADKVTVLAQY 1317 (1659)
Q Consensus 1247 ~~~lGi~l~gg~~~gi~V~~V~--------~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~-~~~~v~L~v~r 1317 (1659)
+.++|+.+.. .|++|.... .+|||+.+||++||.|++|||.++.++.....+ +.. .+..+.|.|.|
T Consensus 95 G~~iGI~l~t---~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~s~~DL~~i--L~~~~g~~V~LtV~R 169 (402)
T TIGR02860 95 GQSIGVKLNT---KGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIKNMDDLANL--INKAGGEKLTLTIER 169 (402)
T ss_pred CEEEEEEEec---CEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHH--HHhCCCCeEEEEEEE
Confidence 4467777653 488875442 368999999999999999999999988665433 332 46789999999
Q ss_pred Ccc
Q psy3835 1318 SVE 1320 (1659)
Q Consensus 1318 ~~~ 1320 (1659)
+..
T Consensus 170 ~Ge 172 (402)
T TIGR02860 170 GGK 172 (402)
T ss_pred CCE
Confidence 764
No 326
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=95.84 E-value=3.3 Score=44.42 Aligned_cols=32 Identities=25% Similarity=0.180 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 476 HEDAVKEINTAMAVRMKATKDLKRLTEERNAA 507 (1659)
Q Consensus 476 ieele~el~~l~~~l~~~~~eleelkee~~~~ 507 (1659)
++.|++++..+.....-.+.+|..|++.+.+-
T Consensus 122 Le~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eE 153 (178)
T PF14073_consen 122 LEKLEKEYLRLTATQSLAETKIKELEEKLQEE 153 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444445555555544443
No 327
>KOG4677|consensus
Probab=95.82 E-value=6.2 Score=47.40 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=9.2
Q ss_pred CcccccceEEEEeCCCCccc
Q psy3835 202 GLTLESGLYICKISPGSLAA 221 (1659)
Q Consensus 202 g~~~~~~~~v~~i~~g~~a~ 221 (1659)
||.-+.| -++..+||.-++
T Consensus 84 tir~e~G-S~S~~~p~vt~~ 102 (554)
T KOG4677|consen 84 TIREEAG-SNSGSTPEVTEQ 102 (554)
T ss_pred ccccccC-CccCcCCcchhh
Confidence 3444444 255555555443
No 328
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=95.81 E-value=0.048 Score=56.67 Aligned_cols=71 Identities=25% Similarity=0.161 Sum_probs=50.1
Q ss_pred cCccCeEEecC-----CCcceEEEEeCCCChhhhcCCCC-CCEEEEECCeeCCCcCHHHHHHHHcCCCCeEEEEEEeC
Q psy3835 1247 CSNLGISLVGG-----NAVGIYVHSVQSGSLGYSAGLRT-GDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYS 1318 (1659)
Q Consensus 1247 ~~~lGi~l~gg-----~~~gi~V~~V~~gs~A~~~gL~~-GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~r~ 1318 (1659)
...||+++.-. ...+.-|.+|.|+|||+.+||.+ .|-|+.+++..+.+.+....... ...+.++.|.|-..
T Consensus 25 ~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~~~l~~~v~-~~~~~~l~L~Vyns 101 (138)
T PF04495_consen 25 QGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDEDDLFELVE-ANENKPLQLYVYNS 101 (138)
T ss_dssp SSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--STCHHHHHHH-HTTTS-EEEEEEET
T ss_pred CCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCHHHHHHHHH-HcCCCcEEEEEEEC
Confidence 35789998632 34589999999999999999998 69999999999988777655443 46778888888643
No 329
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.79 E-value=1.4 Score=56.10 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3835 332 SSLRSKYSDLISDKQRLDRELLELR 356 (1659)
Q Consensus 332 ~~l~~e~~el~~e~~~Le~el~~lk 356 (1659)
..+..++..++.++..++.++..++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~rL~ 117 (457)
T TIGR01000 93 GNEENQKQLLEQQLDNLKDQKKSLD 117 (457)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777766665
No 330
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=95.78 E-value=0.029 Score=67.99 Aligned_cols=71 Identities=23% Similarity=0.495 Sum_probs=52.9
Q ss_pred cCCCCceEEEEecCCCcEEEEEeC--------CCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHh-CCCeEEEEE
Q psy3835 1136 KSVEPLGIQIQCLDSGGVFVSTVS--------EHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQ-CGNSITMLV 1206 (1659)
Q Consensus 1136 k~~~~lG~sl~~~~~~gv~I~~V~--------~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~l~v 1206 (1659)
.++.++|+.+. ..||+|.... .++||+.+||++||.|++|||.++.++... ...+.. .+..+.|.|
T Consensus 93 pgG~~iGI~l~---t~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~s~~DL--~~iL~~~~g~~V~LtV 167 (402)
T TIGR02860 93 PGGQSIGVKLN---TKGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIKNMDDL--ANLINKAGGEKLTLTI 167 (402)
T ss_pred ECCEEEEEEEe---cCEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECCCHHHH--HHHHHhCCCCeEEEEE
Confidence 34556666665 3578875543 368999999999999999999999887544 455554 367899999
Q ss_pred EecCC
Q psy3835 1207 QYSPD 1211 (1659)
Q Consensus 1207 ~r~~~ 1211 (1659)
.|++.
T Consensus 168 ~R~Ge 172 (402)
T TIGR02860 168 ERGGK 172 (402)
T ss_pred EECCE
Confidence 98875
No 331
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=95.65 E-value=4 Score=46.36 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=13.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Q psy3835 563 LKREIASALHDRDKALKECNDLRER 587 (1659)
Q Consensus 563 Lk~ei~~l~~~~~~aieE~e~l~er 587 (1659)
|..++..++. ...+..++..++.+
T Consensus 193 l~~~l~~l~~-~~~vd~eLa~LK~~ 216 (219)
T TIGR02977 193 LEDEFAELEA-DDEIERELAALKAK 216 (219)
T ss_pred HHHHHHHhcC-CChHHHHHHHHHhh
Confidence 4455555542 34566666666654
No 332
>KOG3129|consensus
Probab=95.62 E-value=0.043 Score=58.90 Aligned_cols=61 Identities=20% Similarity=0.184 Sum_probs=46.6
Q ss_pred cEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHH--hCCCeEEEEEEecCCc
Q psy3835 1152 GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLR--QCGNSITMLVQYSPDK 1212 (1659)
Q Consensus 1152 gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~--~~~~~v~l~v~r~~~~ 1212 (1659)
-++|..|.|+|||+.+||+.||.|+.+....-.++...+-...+. .-+..+.++|.|.+..
T Consensus 140 Fa~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~ 202 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQK 202 (231)
T ss_pred eEEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCE
Confidence 378999999999999999999999999877666665433333333 2366788889888764
No 333
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.62 E-value=0.16 Score=60.55 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 511 YSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLE 543 (1659)
Q Consensus 511 l~~l~~e~~~l~~el~~L~~el~ele~ki~~le 543 (1659)
++.++.++....++...+..++.....++.+|+
T Consensus 101 ~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 101 YNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444443
No 334
>KOG4572|consensus
Probab=95.58 E-value=10 Score=48.35 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3835 645 LEANQEIDRLRKHTDKLQAEL 665 (1659)
Q Consensus 645 ~~~~~Ele~lr~~l~~l~~el 665 (1659)
..+...++..+..+++.+.+|
T Consensus 1207 a~ld~d~dh~~de~ekdreqL 1227 (1424)
T KOG4572|consen 1207 AMLDIDIDHDRDEIEKDREQL 1227 (1424)
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 344445555555555555555
No 335
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.56 E-value=2.4 Score=54.01 Aligned_cols=10 Identities=10% Similarity=0.142 Sum_probs=6.4
Q ss_pred CCCCCEEEEE
Q psy3835 765 YKVNDCIVRV 774 (1659)
Q Consensus 765 l~~GD~Il~V 774 (1659)
+.+|+.|+.|
T Consensus 339 V~~G~~l~~I 348 (457)
T TIGR01000 339 VPKGTLIAQI 348 (457)
T ss_pred eCCCCEEEEE
Confidence 5666666665
No 336
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=95.52 E-value=4.3 Score=50.43 Aligned_cols=23 Identities=17% Similarity=0.047 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 290 PLYVRQHNETVRRGDHTLKELEY 312 (1659)
Q Consensus 290 e~L~~q~~E~~~rl~~le~El~~ 312 (1659)
|.+.+++.-+...+.+++.|+..
T Consensus 90 Es~~~kl~RL~~Ev~EL~eEl~~ 112 (388)
T PF04912_consen 90 ESPEQKLQRLRREVEELKEELEK 112 (388)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 337
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.52 E-value=9.3 Score=48.60 Aligned_cols=69 Identities=12% Similarity=0.090 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy3835 525 MEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGEFTA 593 (1659)
Q Consensus 525 l~~L~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~ 593 (1659)
+.....++.++..++..+-..+.-.-.+++.++.++..|+.=....+....++.+-...+++++..+..
T Consensus 271 l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~ 339 (557)
T COG0497 271 LEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDN 339 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhh
Confidence 333333344444444333333333334566666666666666666666666666666666665555544
No 338
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=95.51 E-value=2.6 Score=51.35 Aligned_cols=13 Identities=15% Similarity=0.064 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q psy3835 377 HYMSALNKYETIK 389 (1659)
Q Consensus 377 ~~~~le~~le~l~ 389 (1659)
.+...+-.++...
T Consensus 83 ~L~~a~P~L~~A~ 95 (344)
T PF12777_consen 83 ELAEAEPALEEAQ 95 (344)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 339
>KOG2991|consensus
Probab=95.49 E-value=5.3 Score=44.38 Aligned_cols=77 Identities=13% Similarity=0.204 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy3835 515 MSERDSVHKEMEKLSE-----DLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFG 589 (1659)
Q Consensus 515 ~~e~~~l~~el~~L~~-----el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~ 589 (1659)
+.+-..+.++.++|-. .+.+++.+++-......+++...+.+-.-+++|.+..+....-..-+.+++++.+.+++
T Consensus 216 MAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq 295 (330)
T KOG2991|consen 216 MAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQ 295 (330)
T ss_pred HHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 3444444444444332 23334444333333333333333444444444444444333333344444444443333
Q ss_pred HH
Q psy3835 590 EF 591 (1659)
Q Consensus 590 e~ 591 (1659)
.+
T Consensus 296 ~l 297 (330)
T KOG2991|consen 296 RL 297 (330)
T ss_pred HH
Confidence 33
No 340
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=95.42 E-value=6.6 Score=45.00 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy3835 555 TLSYQIETLKREIASALHDRDKALKECNDL 584 (1659)
Q Consensus 555 ~l~~ele~Lk~ei~~l~~~~~~aieE~e~l 584 (1659)
.+.+++..-++.|+++..+...+..+.+.+
T Consensus 190 ~m~kei~~~re~i~el~e~I~~L~~eV~~L 219 (258)
T PF15397_consen 190 VMQKEIVQFREEIDELEEEIPQLRAEVEQL 219 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333333
No 341
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.41 E-value=0.013 Score=69.64 Aligned_cols=99 Identities=13% Similarity=0.080 Sum_probs=66.8
Q ss_pred CCcEEEECCCh---HHHHHHHhhhCCCc--------ccccccceec--------------CChHHHHHhccCCceEEEEE
Q psy3835 1474 LRPVILVGALS---DTVTDKLLQDFPDK--------FVRCAPEIMH--------------CPQAAMEKGLADNLFVDYRK 1528 (1659)
Q Consensus 1474 ~RpvVl~Gp~g---~~l~~~Ll~~~p~~--------f~~~v~~Ttr--------------vs~~~f~~~i~~~~flE~~~ 1528 (1659)
+..|+|+||+| ++|..+|.+.++.. +...+++||+ ++...|.+.+..+.|+++
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~-- 81 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRD-- 81 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHH--
Confidence 45788999998 89999998876542 4556788997 333334444444555544
Q ss_pred eCCeeeeecHHHHHHHHHcCCCeEEEEcChhHHHHH-HhcCCccEEEEEecCCHHHHHHHHh
Q psy3835 1529 KGAYFECTSVAAVKDACDKNNAHVILDVSLAGVERL-HRQHVYPIVLLIKFKSTKQIKEIKE 1589 (1659)
Q Consensus 1529 ~~g~~YGts~~~V~~v~~~~gk~~iLdi~~~~~~~l-~~~~~~pivIfI~pps~~~l~~~~~ 1589 (1659)
..+.|++++++ |+++||+ |...+ .++-+..+ +..||+.+.++++++
T Consensus 82 --------a~~~i~~i~~~-gk~pIlv----GGt~~Y~~al~~g~--~~~p~~~~~~r~~l~ 128 (307)
T PRK00091 82 --------ALAAIADILAR-GKLPILV----GGTGLYIKALLEGL--SPLPPADPELRAELE 128 (307)
T ss_pred --------HHHHHHHHHhC-CCCEEEE----CcHHHHHHHhccCC--CCCCCCCHHHHHHHH
Confidence 37889999999 9999998 33333 22323333 367898888887766
No 342
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=95.40 E-value=0.074 Score=50.57 Aligned_cols=70 Identities=21% Similarity=0.221 Sum_probs=43.2
Q ss_pred ccCeEEecCCCcceEEEEeCCCC--------hhhhcC--CCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCeEEEEEEeC
Q psy3835 1249 NLGISLVGGNAVGIYVHSVQSGS--------LGYSAG--LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYS 1318 (1659)
Q Consensus 1249 ~lGi~l~gg~~~gi~V~~V~~gs--------~A~~~g--L~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~r~ 1318 (1659)
.||..+.-. ..+..|.+|.+|. |-...| +++||.|++|||+++..-.....+ +...++..|.|+|.+.
T Consensus 2 ~LGAd~~~~-~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~~~~~l-L~~~agk~V~Ltv~~~ 79 (88)
T PF14685_consen 2 LLGADFSYD-NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADANPYRL-LEGKAGKQVLLTVNRK 79 (88)
T ss_dssp B-SEEEEEE-TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB-HHHH-HHTTTTSEEEEEEE-S
T ss_pred ccceEEEEc-CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCCCHHHH-hcccCCCEEEEEEecC
Confidence 356555544 3578899999874 444433 679999999999999865444333 2356888999999987
Q ss_pred cc
Q psy3835 1319 VE 1320 (1659)
Q Consensus 1319 ~~ 1320 (1659)
+.
T Consensus 80 ~~ 81 (88)
T PF14685_consen 80 PG 81 (88)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 343
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=95.39 E-value=11 Score=48.59 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3835 332 SSLRSKYSDLISDKQRLDRELLELR 356 (1659)
Q Consensus 332 ~~l~~e~~el~~e~~~Le~el~~lk 356 (1659)
.-++.++..|+..+.-|.+++.+.+
T Consensus 390 QplrsENaqLrRrLrilnqqlreqe 414 (861)
T PF15254_consen 390 QPLRSENAQLRRRLRILNQQLREQE 414 (861)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666665543
No 344
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=95.26 E-value=15 Score=48.13 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=27.6
Q ss_pred CCCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 276 RVHRKSVNSSTQTMPLYVRQHNETVRRGDHTLKELEYYRG 315 (1659)
Q Consensus 276 ~~~~~~i~~~~~Ele~L~~q~~E~~~rl~~le~El~~l~~ 315 (1659)
+..+..||+..++|.++..+.++..+++..+...|..-..
T Consensus 177 ~GrnP~iNq~l~klkq~~~ei~e~eke~a~yh~lLe~r~~ 216 (984)
T COG4717 177 SGRNPQINQLLEKLKQERNEIDEAEKEYATYHKLLESRRA 216 (984)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3356678888888887777777777777776666654433
No 345
>KOG0240|consensus
Probab=95.26 E-value=7.7 Score=48.41 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 416 AQEEVARIKKQCEDMNQEKNTALRERNGLKQQCT 449 (1659)
Q Consensus 416 leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~ 449 (1659)
+++++..+..++++...+++...+....|+.++.
T Consensus 419 ~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~ 452 (607)
T KOG0240|consen 419 LTERIESLYQQLDQKDDQINKQSQLMEKLKEQLL 452 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 346
>PF13166 AAA_13: AAA domain
Probab=95.24 E-value=4.6 Score=54.71 Aligned_cols=20 Identities=10% Similarity=0.233 Sum_probs=11.8
Q ss_pred CCEEEEECCEeCCCCChHHHH
Q psy3835 768 NDCIVRVNNLDCSNVSKRMVL 788 (1659)
Q Consensus 768 GD~Il~VNg~~~~~~~~~~~~ 788 (1659)
.+.|+-||+ ||..++|....
T Consensus 527 ~~~iiViDD-PISSLD~~~~~ 546 (712)
T PF13166_consen 527 KKKIIVIDD-PISSLDHNRRF 546 (712)
T ss_pred cCceEEECC-CCCCCCHHHHH
Confidence 455665655 67777665443
No 347
>KOG0992|consensus
Probab=95.22 E-value=11 Score=46.19 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3835 646 EANQEIDRLRKHTDKLQAEL 665 (1659)
Q Consensus 646 ~~~~Ele~lr~~l~~l~~el 665 (1659)
...+.++.++.+....+.+.
T Consensus 382 ~teqkleelk~~f~a~q~K~ 401 (613)
T KOG0992|consen 382 LTEQKLEELKVQFTAKQEKH 401 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444666666666666665
No 348
>PF13166 AAA_13: AAA domain
Probab=95.05 E-value=4 Score=55.21 Aligned_cols=7 Identities=14% Similarity=0.653 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy3835 559 QIETLKR 565 (1659)
Q Consensus 559 ele~Lk~ 565 (1659)
++..++.
T Consensus 439 ~~~~~~~ 445 (712)
T PF13166_consen 439 EIKKIEK 445 (712)
T ss_pred HHHHHHH
Confidence 3333333
No 349
>KOG0804|consensus
Probab=95.03 E-value=1.1 Score=53.65 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=14.8
Q ss_pred ccCeeecCCC-CCC--CCCCCccEEEE
Q psy3835 76 ALGLELVGGR-DDP--FYPNDSSIYVS 99 (1659)
Q Consensus 76 ~~g~~~~~g~-~~p--~~~~d~~i~v~ 99 (1659)
..||..++-. ..+ ++.|.+.+++|
T Consensus 27 d~g~~~~s~~~~~~~~~~sgnp~ve~t 53 (493)
T KOG0804|consen 27 DSGFTSASERLPSQIKYSSGNPSVEET 53 (493)
T ss_pred ccccchhhhccCCcccccCCCCceeee
Confidence 4566555554 333 34788888877
No 350
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.03 E-value=1.1 Score=45.30 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 415 LAQEEVARIKKQCEDMNQEKNTALRE 440 (1659)
Q Consensus 415 ~leeel~~lk~e~~~l~~~~~~l~~e 440 (1659)
.++.++..++.++..+..+.+.+.++
T Consensus 27 ~~E~E~~~l~~el~~l~~~r~~l~~E 52 (120)
T PF12325_consen 27 RLEGELASLQEELARLEAERDELREE 52 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 351
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=95.00 E-value=6.3 Score=42.37 Aligned_cols=48 Identities=25% Similarity=0.272 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHH
Q psy3835 518 RDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKR 565 (1659)
Q Consensus 518 ~~~l~~el~~L~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ 565 (1659)
++.+..+..+|..-..-++.+|..|+.++.+-....+-++..-..|+.
T Consensus 122 Le~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQdkAaqLQt 169 (178)
T PF14073_consen 122 LEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQDKAAQLQT 169 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444445555555555544444333334444344433
No 352
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.96 E-value=15 Score=46.58 Aligned_cols=12 Identities=25% Similarity=0.135 Sum_probs=8.4
Q ss_pred ccCCccccccee
Q psy3835 106 VTDGKLKKKEEV 117 (1659)
Q Consensus 106 ~a~g~l~~~d~i 117 (1659)
-..|+||.|=|-
T Consensus 76 GLhGKLr~GvCY 87 (1480)
T COG3096 76 GLHGKLRAGVCY 87 (1480)
T ss_pred ccccccCcchHH
Confidence 346899998553
No 353
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=94.92 E-value=14 Score=45.96 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy3835 339 SDLISDKQRLDRELLELR 356 (1659)
Q Consensus 339 ~el~~e~~~Le~el~~lk 356 (1659)
..+...+..|++++..++
T Consensus 128 ~~l~~~~~~L~~~L~~l~ 145 (388)
T PF04912_consen 128 EELAQQLEELSKQLDSLK 145 (388)
T ss_pred hhHHHHHHHHHHHHHHhh
Confidence 344556666666666663
No 354
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=94.90 E-value=0.13 Score=59.02 Aligned_cols=58 Identities=24% Similarity=0.361 Sum_probs=49.1
Q ss_pred CcEEEEEeCCCChhhhcC-CCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEEecC
Q psy3835 1151 GGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSP 1210 (1659)
Q Consensus 1151 ~gv~I~~V~~gs~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~ 1210 (1659)
.||++..|..+++|. | |+.||.|++|||.++.+.........-+.+|+.|++.+.|..
T Consensus 130 ~gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~s~~e~i~~v~~~k~Gd~VtI~~~r~~ 188 (342)
T COG3480 130 AGVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFTSSDELIDYVSSKKPGDEVTIDYERHN 188 (342)
T ss_pred eeEEEEEccCCcchh--ceeccCCeEEeeCCeecCCHHHHHHHHhccCCCCeEEEEEEecc
Confidence 489999999999874 6 999999999999999987766666666678999999999743
No 355
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=94.88 E-value=11 Score=44.56 Aligned_cols=17 Identities=47% Similarity=0.593 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3835 649 QEIDRLRKHTDKLQAEL 665 (1659)
Q Consensus 649 ~Ele~lr~~l~~l~~el 665 (1659)
.|...|+++.+.+..++
T Consensus 349 EEKaaLrkerd~L~keL 365 (442)
T PF06637_consen 349 EEKAALRKERDSLAKEL 365 (442)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444444
No 356
>KOG4687|consensus
Probab=94.79 E-value=8.8 Score=43.03 Aligned_cols=11 Identities=9% Similarity=-0.236 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q psy3835 453 RQWDIALRERN 463 (1659)
Q Consensus 453 ~~~~~l~~el~ 463 (1659)
.++.++...++
T Consensus 111 dq~adLhgD~e 121 (389)
T KOG4687|consen 111 DQKADLHGDCE 121 (389)
T ss_pred HHHHHHhchHH
Confidence 33333333333
No 357
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=94.78 E-value=6.8 Score=50.79 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=19.3
Q ss_pred cCCCcEEEEeCCcccCCCCCHHHHHHHhhc
Q psy3835 226 LAVGDRVLSINNRTVDGLSSAREGMALLSD 255 (1659)
Q Consensus 226 l~~gd~i~~in~~~~~~~~s~~e~~~~l~~ 255 (1659)
+..+|.++.+-+-. ..+.+.+-|..+|-.
T Consensus 299 ~g~aD~VlMle~A~-~sVisPEgaAsILwk 327 (762)
T PLN03229 299 IGCANKLLMLENAV-FYVASPEACAAILWK 327 (762)
T ss_pred hhcCCEEEEecCCe-EEecCHHHHHHHHhc
Confidence 44578888776533 444478888888765
No 358
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=3 Score=52.21 Aligned_cols=69 Identities=20% Similarity=0.302 Sum_probs=40.5
Q ss_pred eEEEEeCCCCcccccCCcCCCcEEEEeCCcccC-----CCCCHHHHHHHhhcCCCeEEEEEec-CCCcC------CCCCC
Q psy3835 209 LYICKISPGSLAAKEGSLAVGDRVLSINNRTVD-----GLSSAREGMALLSDSPDVLTITTLK-PTSLG------EHSPR 276 (1659)
Q Consensus 209 ~~v~~i~~g~~a~~dg~l~~gd~i~~in~~~~~-----~~~s~~e~~~~l~~~~~~~~i~~~k-~~~~~------~~~~~ 276 (1659)
..|.-|.||- ++|=-+|.+||..|+ |+ +..|++.++.+-|.-+.++.=- |-..+ ..|+.
T Consensus 244 ~lIVGIDPGi--------TtgiAvldldGevl~~~S~r~~-~~~eVve~I~~lG~PvvVAtDVtp~P~~V~KiAasf~A~ 314 (652)
T COG2433 244 SLIVGIDPGI--------TTGIAVLDLDGEVLDLESRRGI-DRSEVVEFISELGKPVVVATDVTPAPETVKKIAASFNAV 314 (652)
T ss_pred ceEEEeCCCc--------eeeEEEEecCCcEEeeeccccC-CHHHHHHHHHHcCCceEEEccCCCChHHHHHHHHHcCCc
Confidence 4677777762 334445666665544 45 6899999999987766655432 21111 12666
Q ss_pred CCccccchhh
Q psy3835 277 VHRKSVNSST 286 (1659)
Q Consensus 277 ~~~~~i~~~~ 286 (1659)
.|.+...=+.
T Consensus 315 ly~P~~dLsv 324 (652)
T COG2433 315 LYTPDRDLSV 324 (652)
T ss_pred ccCCcccCCH
Confidence 6666655444
No 359
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=94.67 E-value=0.052 Score=66.26 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=48.6
Q ss_pred CCCceEEEEecCCCcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEEecCC
Q psy3835 1138 VEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211 (1659)
Q Consensus 1138 ~~~lG~sl~~~~~~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 1211 (1659)
...||+.+.. ..++..|..|.++|||.+|||.+||.|++|||.+-.-. -..++..|.+.+.+.+.
T Consensus 450 ~~~LGl~v~~-~~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~s~~l~--------~~~~~d~i~v~~~~~~~ 514 (558)
T COG3975 450 AYYLGLKVKS-EGGHEKITFVFPGGPAYKAGLSPGDKIVAINGISDQLD--------RYKVNDKIQVHVFREGR 514 (558)
T ss_pred CcccceEecc-cCCeeEEEecCCCChhHhccCCCccEEEEEcCcccccc--------ccccccceEEEEccCCc
Confidence 3477877765 35689999999999999999999999999999921111 01346777777766554
No 360
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=94.66 E-value=3.4 Score=51.33 Aligned_cols=35 Identities=20% Similarity=0.126 Sum_probs=28.3
Q ss_pred CccccchhhccchHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 278 HRKSVNSSTQTMPLYVRQHNETVRRGDHTLKELEY 312 (1659)
Q Consensus 278 ~~~~i~~~~~Ele~L~~q~~E~~~rl~~le~El~~ 312 (1659)
.+....++.+-.+.|.++......|+..+++|.+.
T Consensus 293 n~ril~sstes~e~L~qqV~qs~EKIa~LEqEKEH 327 (518)
T PF10212_consen 293 NRRILLSSTESREGLAQQVQQSQEKIAKLEQEKEH 327 (518)
T ss_pred hhHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888899999999999999999998664
No 361
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=94.58 E-value=17 Score=45.27 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 299 TVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLEL 355 (1659)
Q Consensus 299 ~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~l 355 (1659)
....+..++.++..++..........-.+-.++..++........++..|..++...
T Consensus 18 l~~~~~~lqaev~~lr~~~~~~e~~~~~l~~el~qvr~~~~~Q~seL~~l~~ev~~~ 74 (531)
T PF15450_consen 18 LEQWVAELQAEVACLRGHKERCERATLSLLRELLQVRARVQLQDSELMQLRQEVKQR 74 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555555555555555555555666666666556666666666665543
No 362
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.062 Score=65.75 Aligned_cols=63 Identities=22% Similarity=0.265 Sum_probs=54.8
Q ss_pred CCCcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEEecCC
Q psy3835 1149 DSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211 (1659)
Q Consensus 1149 ~~~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 1211 (1659)
...|++|..|.+++||+++|++.||.|+++||..+.+.............+..+.+.+.|++.
T Consensus 268 ~~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~g~ 330 (347)
T COG0265 268 VAAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRGGK 330 (347)
T ss_pred CCCceEEEecCCCChHHHcCCCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEECCE
Confidence 356799999999999999999999999999999999887776555555578899999999865
No 363
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=94.55 E-value=3.5 Score=50.34 Aligned_cols=51 Identities=29% Similarity=0.375 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHH
Q psy3835 515 MSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKR 565 (1659)
Q Consensus 515 ~~e~~~l~~el~~L~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ 565 (1659)
+.+.+....+...++.++...+.++.+...-+..+..+.......+..++.
T Consensus 255 ~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~ 305 (344)
T PF12777_consen 255 QKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEE 305 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333
No 364
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=94.51 E-value=10 Score=49.17 Aligned_cols=23 Identities=9% Similarity=-0.039 Sum_probs=16.6
Q ss_pred CccccchhhccchHHHHHHHHHH
Q psy3835 278 HRKSVNSSTQTMPLYVRQHNETV 300 (1659)
Q Consensus 278 ~~~~i~~~~~Ele~L~~q~~E~~ 300 (1659)
.+-+......+++.|++++.++.
T Consensus 427 ~~~~~~~Le~elekLk~eilKAk 449 (762)
T PLN03229 427 VKTPVRELEGEVEKLKEQILKAK 449 (762)
T ss_pred CCCCCccHHHHHHHHHHHHHhcc
Confidence 34556677788888888887774
No 365
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.11 Score=63.42 Aligned_cols=62 Identities=29% Similarity=0.349 Sum_probs=53.8
Q ss_pred CcceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCeEEEEEEeCcc
Q psy3835 1259 AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVE 1320 (1659)
Q Consensus 1259 ~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~r~~~ 1320 (1659)
..|++|..|.++|||+++|++.||.|+++||..+.+.............+..+.+.+.|+..
T Consensus 269 ~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~g~ 330 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRGGK 330 (347)
T ss_pred CCceEEEecCCCChHHHcCCCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEECCE
Confidence 45799999999999999999999999999999999888776665555578899999999843
No 366
>KOG4302|consensus
Probab=94.40 E-value=23 Score=46.10 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy3835 373 SLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVD 411 (1659)
Q Consensus 373 ~l~~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~ 411 (1659)
.+.+.+..+...++.+.+++++-..++.++..++..+-.
T Consensus 100 tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~ 138 (660)
T KOG4302|consen 100 TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCE 138 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555554444444433
No 367
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=94.39 E-value=18 Score=44.85 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3835 313 YRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELR 356 (1659)
Q Consensus 313 l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk 356 (1659)
+...+.++..=..+|...+..+..++..|......++..+..+.
T Consensus 48 L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~ 91 (384)
T PF03148_consen 48 LRQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALR 91 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444455555666666666666666666666666554
No 368
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=94.29 E-value=13 Score=42.90 Aligned_cols=33 Identities=12% Similarity=0.295 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3835 324 LEAAAQESSSLRSKYSDLISDKQRLDRELLELR 356 (1659)
Q Consensus 324 l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk 356 (1659)
....+.....++..+...-.++..+..++..++
T Consensus 33 ~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~ 65 (240)
T PF12795_consen 33 IKKQKKRAAEYQKQIDQAPKEIRELQKELEALK 65 (240)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 334445555566666666666666666666664
No 369
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.27 E-value=2.2 Score=43.17 Aligned_cols=34 Identities=18% Similarity=0.443 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3835 387 TIKDEYDALRKRFDDLINTHSTAVDKLELAQEEV 420 (1659)
Q Consensus 387 ~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel 420 (1659)
.++.++.+++.++..+-.-+.....+.+.++..+
T Consensus 72 ~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv 105 (120)
T PF12325_consen 72 ELEQELEELQQRYQTLLELLGEKSEEVEELRADV 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3334444444444443333333333333333333
No 370
>KOG4302|consensus
Probab=94.25 E-value=24 Score=45.84 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3835 381 ALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEV 420 (1659)
Q Consensus 381 le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel 420 (1659)
+.+.+..+...+..+.+++++-..++..+..+++.+-+++
T Consensus 101 Lke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l 140 (660)
T KOG4302|consen 101 LKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEEL 140 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444444444333
No 371
>KOG4348|consensus
Probab=94.20 E-value=0.041 Score=64.34 Aligned_cols=54 Identities=26% Similarity=0.466 Sum_probs=44.3
Q ss_pred cceeeeccccCCCCCccccccccCCcEEEEecCCCCCCCCcEEEEEeccCCCcccccCcCChh
Q psy3835 1332 SFYMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKY 1394 (1659)
Q Consensus 1332 ~~yvra~f~y~~~~~~~~~L~f~~gdil~v~~t~~~~~~~~W~a~~v~~~~~~~~~GlIPs~~ 1394 (1659)
.-|.|+.|-|++..|+ +|.|+-||||+.++. .-+|.|||..-. + +..|+.|-..
T Consensus 261 Keycrv~F~Ye~qndD--ELt~KEgdil~lItK-~cgdaGWweGEL---n---Gk~GvFPDNF 314 (627)
T KOG4348|consen 261 KEYCRVKFVYEPQNDD--ELTLKEGDILILITK-NCGDAGWWEGEL---N---GKKGVFPDNF 314 (627)
T ss_pred hhheeeeeeecCCCcc--ceeeccccEEEEecc-cccccceeeeee---c---CccccCCchh
Confidence 4599999999999999 999999999999984 458899996432 3 3589999773
No 372
>COG5283 Phage-related tail protein [Function unknown]
Probab=94.16 E-value=33 Score=46.96 Aligned_cols=58 Identities=10% Similarity=0.149 Sum_probs=29.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 287 QTMPLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISD 344 (1659)
Q Consensus 287 ~Ele~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e 344 (1659)
..++.|+..+....+-.+.+|+.+..-.+-+..-..+++.+.+..+....-|.++..+
T Consensus 22 ~~in~L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe 79 (1213)
T COG5283 22 KNINVLKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQE 79 (1213)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666665555555555554555554444444444443333333
No 373
>KOG3129|consensus
Probab=94.13 E-value=0.11 Score=55.88 Aligned_cols=58 Identities=24% Similarity=0.200 Sum_probs=43.5
Q ss_pred eEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHH--HHcCCCCeEEEEEEeCc
Q psy3835 1262 IYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAY--ELAKPADKVTVLAQYSV 1319 (1659)
Q Consensus 1262 i~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~--~l~~~~~~v~L~v~r~~ 1319 (1659)
++|.+|.|+|||+.|||+.||.|+.+..+.--+....+.+. ...+-+..+.++|.|..
T Consensus 141 a~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g 200 (231)
T KOG3129|consen 141 AVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREG 200 (231)
T ss_pred EEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCC
Confidence 68999999999999999999999998876655544333222 22345678888888764
No 374
>KOG4787|consensus
Probab=94.07 E-value=11 Score=46.78 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 375 NQHYMSALNKYETIKDEYDALRKRFDDLIN 404 (1659)
Q Consensus 375 ~~~~~~le~~le~l~~e~~~l~~~~~el~~ 404 (1659)
+.++..+..+++.++.+.+-|.+++.++..
T Consensus 338 ~~~~~~~~Tr~Er~Er~~D~L~rri~~~~~ 367 (852)
T KOG4787|consen 338 ESQVQHLNTKIERLEKTNDHLNKKIVELEA 367 (852)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 333444444444555555555555555443
No 375
>KOG0244|consensus
Probab=94.05 E-value=30 Score=46.11 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 386 ETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIR 453 (1659)
Q Consensus 386 e~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~ 453 (1659)
.++..+..++.+++...+..++....+......-...++...-.++.++..++.+...+..++.....
T Consensus 470 ~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~ 537 (913)
T KOG0244|consen 470 GSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNR 537 (913)
T ss_pred hhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhH
Confidence 33445555555555555554444443333333333333333444444444455555555555444433
No 376
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.02 E-value=0.45 Score=53.06 Aligned_cols=103 Identities=8% Similarity=0.025 Sum_probs=55.1
Q ss_pred HHHHHHcCCCeEEEEcChhHHHHHHh-cCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHH---HHHHHHHHHHHH
Q psy3835 1541 VKDACDKNNAHVILDVSLAGVERLHR-QHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAK---AAKEMYEHGLKI 1616 (1659)
Q Consensus 1541 V~~v~~~~gk~~iLdi~~~~~~~l~~-~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~---~~~~~~~~a~~~ 1616 (1659)
++..+.. |..+|+|--...-..+.. .....+++|+..++.+.+++|+..+ ++....+...++ .+.++..--..+
T Consensus 90 a~~~l~~-G~sVIvEgv~l~p~~~~~~~~~~v~~i~l~v~d~e~lr~Rl~~R-~~~~~~~~p~~~~~~~~~~ir~i~~~l 167 (197)
T PRK12339 90 IRRALLN-GEDLVIESLYFHPPMIDENRTNNIRAFYLYIRDAELHRSRLADR-INYTHKNSPGKRLAEHLPEYRTIMDYS 167 (197)
T ss_pred HHHHHHc-CCCEEEEecCcCHHHHHHHHhcCeEEEEEEeCCHHHHHHHHHHH-hhcccCCCcHHHHHHHHHHHHHHHHHH
Confidence 5667788 999999943332232321 1234577888888999998887722 121111111111 111111111111
Q ss_pred HHHcCCcceEEEeCCCCHHHHHHHHHHHHH
Q psy3835 1617 ECEHKHYISAVIPAGVNIAYMCTQIQTAVE 1646 (1659)
Q Consensus 1617 e~~~~~~fd~vi~n~~~~~~~~~~l~~ii~ 1646 (1659)
......+-=-+|.|+ |++.+.+.+.+.+.
T Consensus 168 ~~~a~~~~i~~i~~~-~~~~~~~~~~~~~~ 196 (197)
T PRK12339 168 IADARGYNIKVIDTD-NYREARNPLLDPIS 196 (197)
T ss_pred HHHHHHcCCCeecCc-cHHHHHHHHHHHhc
Confidence 111222234466788 99999998877663
No 377
>KOG0239|consensus
Probab=94.01 E-value=7.1 Score=51.40 Aligned_cols=9 Identities=44% Similarity=0.254 Sum_probs=3.5
Q ss_pred HHHHhhhhH
Q psy3835 542 LEMENKELV 550 (1659)
Q Consensus 542 le~el~~l~ 550 (1659)
|-+++.+++
T Consensus 305 L~N~i~eLk 313 (670)
T KOG0239|consen 305 LHNEILELK 313 (670)
T ss_pred HHHHHHHhh
Confidence 333334443
No 378
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=93.98 E-value=0.15 Score=58.84 Aligned_cols=57 Identities=19% Similarity=0.238 Sum_probs=43.0
Q ss_pred EeCCCChhh---hcCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCeEEEEEEeCcccc
Q psy3835 1266 SVQSGSLGY---SAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERY 1322 (1659)
Q Consensus 1266 ~V~~gs~A~---~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~r~~~~~ 1322 (1659)
+|.||..++ .+||++||++++|||.++.+......+..-......++|+|.|++..+
T Consensus 210 rl~Pgkd~~lF~~~GLq~GDva~sING~dL~D~~qa~~l~~~L~~~tei~ltVeRdGq~~ 269 (276)
T PRK09681 210 AVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARH 269 (276)
T ss_pred EECCCCcHHHHHHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHhccCCeEEEEEEECCEEE
Confidence 566776443 389999999999999999877655433333357789999999997644
No 379
>KOG0240|consensus
Probab=93.95 E-value=16 Score=45.67 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=16.8
Q ss_pred EEEEeCCcccCCCCCHHHHHHHhhcC
Q psy3835 231 RVLSINNRTVDGLSSAREGMALLSDS 256 (1659)
Q Consensus 231 ~i~~in~~~~~~~~s~~e~~~~l~~~ 256 (1659)
+++.|-|.....+.|.+++...|...
T Consensus 166 ~v~~vkG~t~~~v~s~d~v~~~i~~g 191 (607)
T KOG0240|consen 166 RVPYVKGVTERFVSSPDEVLDVIDEG 191 (607)
T ss_pred CCceecCceeEEecCHHHHHHHHhcc
Confidence 45556666666666777777777663
No 380
>KOG2196|consensus
Probab=93.88 E-value=7.6 Score=43.30 Aligned_cols=44 Identities=9% Similarity=0.045 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 417 QEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALR 460 (1659)
Q Consensus 417 eeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~ 460 (1659)
-.++..+.+.+-+...++..+..+...++...+.+...++.+..
T Consensus 98 ~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~s 141 (254)
T KOG2196|consen 98 ATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILS 141 (254)
T ss_pred HHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444443333333
No 381
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=93.83 E-value=33 Score=45.82 Aligned_cols=59 Identities=15% Similarity=0.304 Sum_probs=36.6
Q ss_pred CCCCccCCCcceeEEE-EEe-ccCCCCCCccCeeecCCCCCC--CCCCCccEEEEeeccCCcc
Q psy3835 49 DSAIDTDLQEWDTEVL-DMN-LTNLSPNEALGLELVGGRDDP--FYPNDSSIYVSNIVKGSVT 107 (1659)
Q Consensus 49 ~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~g~~~~~g~~~p--~~~~d~~i~v~~v~~g~~a 107 (1659)
..-|..-..-|+--++ +|. -.++=..+-.|--++|+.|.= |.|.|-+++-++|.-.|..
T Consensus 822 stni~~~~~~~~sN~ifei~DPdGLL~~KqVG~h~~gse~EfS~YLPeDVALvP~kvt~dgkt 884 (1439)
T PF12252_consen 822 STNIEVPRTIFDSNTIFEILDPDGLLQPKQVGTHGEGSEDEFSVYLPEDVALVPTKVTLDGKT 884 (1439)
T ss_pred cceeccchhhcCCceEEEeeCcccccCHHhhcccCCCCccceeEecccceeeeeeEEeecCcc
Confidence 3345555556664433 221 111112256788899998875 5599999999999877733
No 382
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=93.80 E-value=19 Score=42.96 Aligned_cols=14 Identities=14% Similarity=0.297 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q psy3835 555 TLSYQIETLKREIA 568 (1659)
Q Consensus 555 ~l~~ele~Lk~ei~ 568 (1659)
.+...+..+...+.
T Consensus 273 ~L~~~~~~l~~~~~ 286 (296)
T PF13949_consen 273 DLLEILNKLQQKVE 286 (296)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 383
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=93.75 E-value=0.16 Score=58.55 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=38.2
Q ss_pred hhhhcCCCCCCEEEeeCCeecCCCCHHH-HHHHHHhCCCeEEEEEEecCCcc
Q psy3835 1163 LASQVGLQVGDQLLEVCGINMRSATYQL-AASVLRQCGNSITMLVQYSPDKY 1213 (1659)
Q Consensus 1163 ~A~~~GL~~GD~Il~VNg~~v~~~~~~~-~~~~l~~~~~~v~l~v~r~~~~~ 1213 (1659)
...++||++||.+++|||.++.+..+.. +...|+. ...++|+|.|++..+
T Consensus 219 lF~~~GLq~GDva~sING~dL~D~~qa~~l~~~L~~-~tei~ltVeRdGq~~ 269 (276)
T PRK09681 219 LFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPS-MDSIQLTVLRKGARH 269 (276)
T ss_pred HHHHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHhcc-CCeEEEEEEECCEEE
Confidence 4567999999999999999999765442 3333333 578999999999743
No 384
>PRK06762 hypothetical protein; Provisional
Probab=93.75 E-value=0.72 Score=49.84 Aligned_cols=149 Identities=11% Similarity=0.076 Sum_probs=79.7
Q ss_pred CCcEEEECCCh---HHHHHHHhhhCCCcccccccceecCChHHHHHhccCCceEEEEEeCCee-eeecHHHHHHHHHcCC
Q psy3835 1474 LRPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMHCPQAAMEKGLADNLFVDYRKKGAYF-ECTSVAAVKDACDKNN 1549 (1659)
Q Consensus 1474 ~RpvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttrvs~~~f~~~i~~~~flE~~~~~g~~-YGts~~~V~~v~~~~g 1549 (1659)
++.|+|+|++| +|+.+.|.+.+|. ....++.+.+...+.. ++. ..+.+ +-.-...++..++. |
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~-------~~~~i~~D~~r~~l~~----~~~-~~~~~~~~~~~~~~~~~~~~-g 68 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGR-------GTLLVSQDVVRRDMLR----VKD-GPGNLSIDLIEQLVRYGLGH-C 68 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC-------CeEEecHHHHHHHhcc----ccC-CCCCcCHHHHHHHHHHHHhC-C
Confidence 35688899997 9999999876642 1222345555544321 111 11111 11123444556778 9
Q ss_pred CeEEEEcChh------HHHHHHhcCCcc-EEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHHcCC
Q psy3835 1550 AHVILDVSLA------GVERLHRQHVYP-IVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLKIECEHKH 1622 (1659)
Q Consensus 1550 k~~iLdi~~~------~~~~l~~~~~~p-ivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~~~e~~~~~ 1622 (1659)
..+|+|-... -++.|......| .+||+.+|- +.+.+|.. .|- ......++.+..+++.-..+ .
T Consensus 69 ~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~-e~~~~R~~---~R~-~~~~~~~~~l~~~~~~~~~~-----~ 138 (166)
T PRK06762 69 EFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSF-EETLRRHS---TRP-KSHEFGEDDMRRWWNPHDTL-----G 138 (166)
T ss_pred CEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCH-HHHHHHHh---ccc-ccccCCHHHHHHHHhhcCCc-----C
Confidence 9999985432 134444433334 778888864 55555554 231 11123455565555432211 3
Q ss_pred cceEEEeCC-CCHHHHHHHHHHHH
Q psy3835 1623 YISAVIPAG-VNIAYMCTQIQTAV 1645 (1659)
Q Consensus 1623 ~fd~vi~n~-~~~~~~~~~l~~ii 1645 (1659)
.++++|+++ .++++.+.++...+
T Consensus 139 ~~~~~~~~~~~~~~~v~~~i~~~~ 162 (166)
T PRK06762 139 VIGETIFTDNLSLKDIFDAILTDI 162 (166)
T ss_pred CCCeEEecCCCCHHHHHHHHHHHh
Confidence 478888776 35666666555544
No 385
>PF15294 Leu_zip: Leucine zipper
Probab=93.72 E-value=17 Score=42.15 Aligned_cols=44 Identities=14% Similarity=0.358 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3835 382 LNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKK 425 (1659)
Q Consensus 382 e~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~ 425 (1659)
..++..++.+.+.++.++..++........+-..++.++.+++.
T Consensus 131 ~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 131 NKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444443
No 386
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=93.71 E-value=0.14 Score=62.71 Aligned_cols=62 Identities=27% Similarity=0.320 Sum_probs=46.7
Q ss_pred ccCeEEecCCCcceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCeEEEEEEeCc
Q psy3835 1249 NLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSV 1319 (1659)
Q Consensus 1249 ~lGi~l~gg~~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~r~~ 1319 (1659)
.||+.+... ..+..|+.|.+||||+.+||.+||.|++|||.+-.... .+.+..+.+.+.+.+
T Consensus 452 ~LGl~v~~~-~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~s~~l~~--------~~~~d~i~v~~~~~~ 513 (558)
T COG3975 452 YLGLKVKSE-GGHEKITFVFPGGPAYKAGLSPGDKIVAINGISDQLDR--------YKVNDKIQVHVFREG 513 (558)
T ss_pred ccceEeccc-CCeeEEEecCCCChhHhccCCCccEEEEEcCccccccc--------cccccceEEEEccCC
Confidence 678777543 35799999999999999999999999999999221111 246677777777653
No 387
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=93.69 E-value=4.9 Score=48.83 Aligned_cols=42 Identities=17% Similarity=0.300 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 501 TEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTL 542 (1659)
Q Consensus 501 kee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~l 542 (1659)
+.++.+.++++++.......+..+|..+.+++.+.+.+++..
T Consensus 279 ~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 279 QDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333344444444444445555555555555544443
No 388
>KOG0606|consensus
Probab=93.59 E-value=0.15 Score=67.23 Aligned_cols=78 Identities=31% Similarity=0.377 Sum_probs=64.6
Q ss_pred EEEecCCcCccCeEEec-----C-CC---cceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCe
Q psy3835 1240 LMIETRKCSNLGISLVG-----G-NA---VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADK 1310 (1659)
Q Consensus 1240 v~l~k~~~~~lGi~l~g-----g-~~---~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~ 1310 (1659)
+.+.+.+ ..|||++.. | .+ .--.|..|.+||||..+||++||.|+-|||..+.+..|.+++.+|.+.+..
T Consensus 630 I~i~~~~-~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~ 708 (1205)
T KOG0606|consen 630 ITIHFSG-KKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSGNK 708 (1205)
T ss_pred eeeeccc-cccCceeeeEEEecCCcccceeeeeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHhcCCe
Confidence 4555544 488987642 2 22 136788999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeC
Q psy3835 1311 VTVLAQYS 1318 (1659)
Q Consensus 1311 v~L~v~r~ 1318 (1659)
|++.+.+-
T Consensus 709 v~~~ttpl 716 (1205)
T KOG0606|consen 709 VTLRTTPL 716 (1205)
T ss_pred eEEEeecc
Confidence 99988764
No 389
>KOG4572|consensus
Probab=93.53 E-value=30 Score=44.48 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy3835 647 ANQEIDRLRKHTDKLQAELQDQSVNY 672 (1659)
Q Consensus 647 ~~~Ele~lr~~l~~l~~el~~~~~~~ 672 (1659)
...+++.|+.++.++++.++++.+.+
T Consensus 1090 ~ehelenLrnEieklndkIkdnne~~ 1115 (1424)
T KOG4572|consen 1090 KEHELENLRNEIEKLNDKIKDNNEGD 1115 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 45667777777777777775554443
No 390
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=93.50 E-value=24 Score=44.29 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3835 647 ANQEIDRLRKHTDKLQAEL 665 (1659)
Q Consensus 647 ~~~Ele~lr~~l~~l~~el 665 (1659)
...+++.+-+.+...+..+
T Consensus 385 f~~~~~klG~~L~~a~~~y 403 (475)
T PRK10361 385 FVDDMSAIGQSLDKAQDNY 403 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555
No 391
>KOG1738|consensus
Probab=93.37 E-value=0.14 Score=63.77 Aligned_cols=75 Identities=23% Similarity=0.272 Sum_probs=65.7
Q ss_pred CCCCceEEEEecCCCcEEEEEeCCCChhhhcC-CCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEEecCC
Q psy3835 1137 SVEPLGIQIQCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211 (1659)
Q Consensus 1137 ~~~~lG~sl~~~~~~gv~I~~V~~gs~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 1211 (1659)
...++|+.|...-++.++|+.+.+++||+..+ |..||.|++||+.-+.+|++..++.-++....-|.++|...+.
T Consensus 211 p~eglg~~I~Ssydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKrp~ 286 (638)
T KOG1738|consen 211 PSEGLGLYIDSSYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKRPV 286 (638)
T ss_pred cccCCceEEeeecCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeeccCC
Confidence 45789999988878889999999999999999 9999999999999999999999999998877767777765443
No 392
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.34 E-value=1.3 Score=47.93 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=5.4
Q ss_pred eEEEEeCCCC
Q psy3835 209 LYICKISPGS 218 (1659)
Q Consensus 209 ~~v~~i~~g~ 218 (1659)
|-|++|.|..
T Consensus 37 ITisSIiPTT 46 (290)
T COG4026 37 ITISSIIPTT 46 (290)
T ss_pred eEEEeeccCc
Confidence 5555555544
No 393
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=93.33 E-value=1.7 Score=49.09 Aligned_cols=83 Identities=8% Similarity=0.073 Sum_probs=58.4
Q ss_pred CCCCCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 274 SPRVHRKSVNSSTQTMPLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELL 353 (1659)
Q Consensus 274 ~~~~~~~~i~~~~~Ele~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~ 353 (1659)
.+-+|..|.....--|..|+.+++|..+++..-+.|+..++.++..+++..-+-+--.-+++..+++.+.+++.|++=++
T Consensus 55 ~PEQYLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvie 134 (305)
T PF15290_consen 55 NPEQYLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIE 134 (305)
T ss_pred CHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999888888877777666665544433333444444444555544444444
Q ss_pred HHh
Q psy3835 354 ELR 356 (1659)
Q Consensus 354 ~lk 356 (1659)
-++
T Consensus 135 Tmr 137 (305)
T PF15290_consen 135 TMR 137 (305)
T ss_pred HHH
Confidence 444
No 394
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=93.29 E-value=3.3 Score=46.91 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 419 EVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAM 487 (1659)
Q Consensus 419 el~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~el~~eieele~el~~l~ 487 (1659)
.+..|+.++.+.+..+.....||.+|+.++......|-+.+=-.-+++-.+++.+++|..|++-++.++
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555555566565555555533333333333334444444544444444444
No 395
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=93.29 E-value=2.9 Score=52.38 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=8.9
Q ss_pred cCeeecCCCCCCC
Q psy3835 77 LGLELVGGRDDPF 89 (1659)
Q Consensus 77 ~g~~~~~g~~~p~ 89 (1659)
+|+||++|-+.-.
T Consensus 5 ~GVDI~~g~p~~~ 17 (652)
T COG2433 5 MGVDIVSGSPRGK 17 (652)
T ss_pred EEEeeecCCCCCc
Confidence 6888887665544
No 396
>KOG4807|consensus
Probab=93.25 E-value=22 Score=41.97 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy3835 557 SYQIETLKREIASALHDRDKALKECNDLRERFGEFTA 593 (1659)
Q Consensus 557 ~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~ 593 (1659)
+.+|.=|+++|..+..+...+.....=...+|.....
T Consensus 518 EsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYt 554 (593)
T KOG4807|consen 518 ESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYT 554 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHH
Confidence 3444555555555544444444444333444444443
No 397
>KOG3532|consensus
Probab=93.21 E-value=0.25 Score=61.10 Aligned_cols=69 Identities=28% Similarity=0.430 Sum_probs=58.7
Q ss_pred CCCceEEEEecCCCcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy3835 1138 VEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQY 1208 (1659)
Q Consensus 1138 ~~~lG~sl~~~~~~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r 1208 (1659)
+.++|+.+...++..|-|..|.++++|.++.+.+||++++|||.+++. ..++...++.....|+.++.+
T Consensus 385 s~~ig~vf~~~~~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s--~~q~~~~~~s~~~~~~~l~~~ 453 (1051)
T KOG3532|consen 385 SSPIGLVFDKNTNRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIRS--ERQATRFLQSTTGDLTVLVER 453 (1051)
T ss_pred cCceeEEEecCCceEEEEEEecCCChhhHhcCCCcceEEEecCccchh--HHHHHHHHHhcccceEEEEee
Confidence 457788887777788999999999999999999999999999999985 567778888777777777766
No 398
>KOG2008|consensus
Probab=93.18 E-value=20 Score=41.24 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHH
Q psy3835 560 IETLKREIASALHDRDKALKE 580 (1659)
Q Consensus 560 le~Lk~ei~~l~~~~~~aieE 580 (1659)
+-.|...+..+.++|..+|+.
T Consensus 157 ~l~l~~~~R~~ek~n~~AIkK 177 (426)
T KOG2008|consen 157 YLALMGRMRQLEKKNKRAIKK 177 (426)
T ss_pred HHHHHHHHHHHHHHhHHHHhh
Confidence 334444455555555555543
No 399
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.01 E-value=0.44 Score=52.14 Aligned_cols=154 Identities=14% Similarity=0.150 Sum_probs=89.4
Q ss_pred EEEECCCh---HHHHHHHhhhCCCcccccccceec--------CChHHHHHhccCCceEEEEE-eCCeee-eecHHHHHH
Q psy3835 1477 VILVGALS---DTVTDKLLQDFPDKFVRCAPEIMH--------CPQAAMEKGLADNLFVDYRK-KGAYFE-CTSVAAVKD 1543 (1659)
Q Consensus 1477 vVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttr--------vs~~~f~~~i~~~~flE~~~-~~g~~Y-Gts~~~V~~ 1543 (1659)
|+|+||+| +|+.++|.+.+| +||-.. ....++-..++. |++-++ +.+..| ++-...+..
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~------i~hlstgd~~r~~~~~~t~lg~~~k~--~i~~g~lv~d~i~~~~v~~rl~~ 74 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLG------LPHLDTGDILRAAIAERTELGEEIKK--YIDKGELVPDEIVNGLVKERLDE 74 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC------CcEEcHhHHhHhhhccCChHHHHHHH--HHHcCCccchHHHHHHHHHHHHh
Confidence 78899998 999999988632 566653 122222222222 333333 334444 544555555
Q ss_pred HHHcCCCeEEEEcChhHHHHHHhcC--------CccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHH
Q psy3835 1544 ACDKNNAHVILDVSLAGVERLHRQH--------VYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLK 1615 (1659)
Q Consensus 1544 v~~~~gk~~iLdi~~~~~~~l~~~~--------~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~~ 1615 (1659)
.-.. + .+|||--|.-+.+.+... .-..++.+..|. +.+-.+.- .|. .|...+.+.+++++..-.+
T Consensus 75 ~d~~-~-~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~-~~~~~r~~---~r~-~r~dd~~~~~~~R~~~y~~ 147 (178)
T COG0563 75 ADCK-A-GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPE-ELLLERLL---GRR-VREDDNEETVKKRLKVYHE 147 (178)
T ss_pred hccc-C-eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCH-HHHHHHHh---Ccc-ccccCCHHHHHHHHHHHHh
Confidence 5222 3 799998777666665421 235888998887 66666654 332 1344567778888766544
Q ss_pred HHHHcCCcceEEEeCCCCHHHHHHHHHHHH
Q psy3835 1616 IECEHKHYISAVIPAGVNIAYMCTQIQTAV 1645 (1659)
Q Consensus 1616 ~e~~~~~~fd~vi~n~~~~~~~~~~l~~ii 1645 (1659)
...-.-.+|.+.|.....++..++.+..++
T Consensus 148 ~~~pli~~y~~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 148 QTAPLIEYYSVTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred cccchhhhheeeccCCCCHHHHHHHHHHhh
Confidence 322333355544444457777777776654
No 400
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=92.96 E-value=25 Score=41.79 Aligned_cols=19 Identities=16% Similarity=0.468 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3835 647 ANQEIDRLRKHTDKLQAEL 665 (1659)
Q Consensus 647 ~~~Ele~lr~~l~~l~~el 665 (1659)
+.+|+++.++++++++.++
T Consensus 361 L~keLeekkreleql~~q~ 379 (442)
T PF06637_consen 361 LAKELEEKKRELEQLKMQL 379 (442)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555
No 401
>PF12812 PDZ_1: PDZ-like domain
Probab=92.95 E-value=0.57 Score=43.69 Aligned_cols=74 Identities=20% Similarity=0.213 Sum_probs=55.1
Q ss_pred CCEEEEECCEeCCCCChHHHHHHHHhcCCeEEEEEEeCCCCCcceEEEEEeccCCCCcCeEecCceEEEEeCCCChhhhc
Q psy3835 768 NDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARSLVTTQLQLNNSYDHGLTLESGLYICKISPGSLAAKE 847 (1659)
Q Consensus 768 GD~Il~VNg~~~~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~~~~~~~~i~~~~~~~lG~~~~~gi~I~~v~~gs~A~~~ 847 (1659)
-||.+.|-|-.+..++|..+...... .|.++.....|+++. .
T Consensus 4 p~r~v~~~Ga~f~~Ls~q~aR~~~~~-------------------------------------~~gv~v~~~~g~~~~-~ 45 (78)
T PF12812_consen 4 PSRFVEVCGAVFHDLSYQQARQYGIP-------------------------------------VGGVYVAVSGGSLAF-A 45 (78)
T ss_pred CCEEEEEcCeecccCCHHHHHHhCCC-------------------------------------CCEEEEEecCCChhh-h
Confidence 47888999988888888875443221 123444567788888 4
Q ss_pred CCCCCCCEEEEeCCcccCCcccHHHHHHHHhcCCC
Q psy3835 848 GSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD 882 (1659)
Q Consensus 848 g~L~~GD~Il~ing~~v~~~~~~~ea~~~l~~~~~ 882 (1659)
+++..|-.|.+|||+++.+ +++.+..++..++
T Consensus 46 ~~i~~g~iI~~Vn~kpt~~---Ld~f~~vvk~ipd 77 (78)
T PF12812_consen 46 GGISKGFIITSVNGKPTPD---LDDFIKVVKKIPD 77 (78)
T ss_pred CCCCCCeEEEeECCcCCcC---HHHHHHHHHhCCC
Confidence 5599999999999999999 7777777776553
No 402
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.95 E-value=3.6 Score=46.66 Aligned_cols=8 Identities=25% Similarity=0.684 Sum_probs=3.4
Q ss_pred cccccCCC
Q psy3835 999 SFVHTHSP 1006 (1659)
Q Consensus 999 ~~~~~~~~ 1006 (1659)
+.++|++|
T Consensus 202 qqIHRNAP 209 (230)
T PF10146_consen 202 QQIHRNAP 209 (230)
T ss_pred HHHhcCCC
Confidence 34444444
No 403
>PRK12704 phosphodiesterase; Provisional
Probab=92.94 E-value=21 Score=46.00 Aligned_cols=10 Identities=20% Similarity=0.165 Sum_probs=4.6
Q ss_pred CeEEEEEEec
Q psy3835 1200 NSITMLVQYS 1209 (1659)
Q Consensus 1200 ~~v~l~v~r~ 1209 (1659)
+.|.++|.|.
T Consensus 503 g~ikvtvire 512 (520)
T PRK12704 503 GQIKVTVIRE 512 (520)
T ss_pred CceEEEEEee
Confidence 3445555443
No 404
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=92.86 E-value=5.6 Score=49.57 Aligned_cols=8 Identities=25% Similarity=0.430 Sum_probs=3.7
Q ss_pred HHHHHHhh
Q psy3835 247 REGMALLS 254 (1659)
Q Consensus 247 ~e~~~~l~ 254 (1659)
+-|++.+.
T Consensus 268 ~~a~~~~~ 275 (518)
T PF10212_consen 268 KRAAAYMS 275 (518)
T ss_pred HHHHHHHH
Confidence 34444444
No 405
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=92.82 E-value=23 Score=45.51 Aligned_cols=8 Identities=25% Similarity=0.181 Sum_probs=3.6
Q ss_pred eEEEEEEe
Q psy3835 1201 SITMLVQY 1208 (1659)
Q Consensus 1201 ~v~l~v~r 1208 (1659)
.|.++|.|
T Consensus 498 ~ikvtvir 505 (514)
T TIGR03319 498 QIKVTVIR 505 (514)
T ss_pred ceEEEEEe
Confidence 34444444
No 406
>KOG0993|consensus
Probab=92.79 E-value=26 Score=41.73 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy3835 558 YQIETLKREIASALHDRDKALKECNDLRERFGEFTA 593 (1659)
Q Consensus 558 ~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~ 593 (1659)
.....+..++....-+-.....++..+++.+++...
T Consensus 420 ~~r~~~~~~l~a~ehv~e~l~~ei~~L~eqle~e~~ 455 (542)
T KOG0993|consen 420 QRRTSLQQELDASEHVQEDLVKEIQSLQEQLEKERQ 455 (542)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555554443
No 407
>KOG0288|consensus
Probab=92.73 E-value=5.4 Score=47.63 Aligned_cols=59 Identities=14% Similarity=0.177 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 379 MSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTA 437 (1659)
Q Consensus 379 ~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l 437 (1659)
..++.++.+..+....+..+...+..+.+....++...|.++++|+++...+..+....
T Consensus 16 ~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~ 74 (459)
T KOG0288|consen 16 IDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVRE 74 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444455555555555555555555544444443
No 408
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=92.73 E-value=22 Score=40.65 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 444 LKQQCTAAIRQWDIALRERNEYQEALAKVQQQHE 477 (1659)
Q Consensus 444 L~~el~~l~~~~~~l~~el~~l~~~l~el~~eie 477 (1659)
++.++......++....-....++.+..++..+.
T Consensus 75 aq~e~q~Aa~~yerA~~~h~aAKe~v~laEq~l~ 108 (239)
T PF05276_consen 75 AQQEAQKAALQYERANSMHAAAKEMVALAEQSLM 108 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444455555555555555555554444433
No 409
>PRK00106 hypothetical protein; Provisional
Probab=92.70 E-value=39 Score=43.41 Aligned_cols=179 Identities=10% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 373 SLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQC-EDMNQEKNTALRERNGLKQQCTAA 451 (1659)
Q Consensus 373 ~l~~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~-~~l~~~~~~l~~ei~~L~~el~~l 451 (1659)
..+...+..+-.+-..+.+-..+.++-...-..+. +....+.++...+.+.+. .++.+....+++++..-+.++...
T Consensus 25 ~~~~~~~~~~~~~~~A~~~A~~IleeAe~eAe~I~--keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~eEr~rL~qr 102 (535)
T PRK00106 25 KMKSAKEAAELTLLNAEQEAVNLRGKAERDAEHIK--KTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQI 102 (535)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 452 IRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSED 531 (1659)
Q Consensus 452 ~~~~~~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~e 531 (1659)
+.++..-+..++.-...+...+.++...++++...+..+.+..++++++.++.....+++..+..+-.+-.---.--.+-
T Consensus 103 E~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~l~~~~~~~~ 182 (535)
T PRK00106 103 ESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILAETENKL 182 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhHHhH
Q psy3835 532 LTQAVRKIKTLEMENKELVEDK 553 (1659)
Q Consensus 532 l~ele~ki~~le~el~~l~~e~ 553 (1659)
..+....+...+.+........
T Consensus 183 ~~~~~~~i~~~e~~a~~~a~~~ 204 (535)
T PRK00106 183 THEIATRIREAEREVKDRSDKM 204 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 410
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=92.67 E-value=10 Score=43.76 Aligned_cols=83 Identities=17% Similarity=0.231 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 443 GLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVH 522 (1659)
Q Consensus 443 ~L~~el~~l~~~~~~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~ 522 (1659)
.+.+++...+..+.++..+-..++.+++....+++..++.+..++.-.-...+|+++++.++..+-+.|-.--..++-+.
T Consensus 173 ~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe 252 (267)
T PF10234_consen 173 AVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLE 252 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34445555555555555555555555555555666666666666655555666666666666666555554444444444
Q ss_pred HHH
Q psy3835 523 KEM 525 (1659)
Q Consensus 523 ~el 525 (1659)
.++
T Consensus 253 ~ql 255 (267)
T PF10234_consen 253 HQL 255 (267)
T ss_pred HHH
Confidence 443
No 411
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=92.66 E-value=0.36 Score=54.38 Aligned_cols=69 Identities=9% Similarity=-0.017 Sum_probs=48.2
Q ss_pred cEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHHcCCcceEEEeCCCCHHHHHHHHHHHHHhh
Q psy3835 1571 PIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLKIECEHKHYISAVIPAGVNIAYMCTQIQTAVELE 1648 (1659)
Q Consensus 1571 pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~~~e~~~~~~fd~vi~n~~~~~~~~~~l~~ii~~~ 1648 (1659)
-.+|||.+ +.+...+|+. .|+..+.++++++++.....+ .+...+|++|.|+++++....++..++...
T Consensus 135 d~ii~V~a-~~e~~~~Rl~-------~R~~~s~e~~~~Ri~~q~~~~-~~~~~ad~vI~N~g~~e~l~~~i~~~~~~~ 203 (208)
T PRK14731 135 DFIVVVAA-DTELRLERAV-------QRGMGSREEIRRRIAAQWPQE-KLIERADYVIYNNGTLDELKAQTEQLYQVL 203 (208)
T ss_pred CeEEEEEC-CHHHHHHHHH-------HcCCCCHHHHHHHHHHcCChH-HHHHhCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 46677755 5566666665 345667888988886543322 223468999999889999999998887643
No 412
>KOG3532|consensus
Probab=92.61 E-value=0.3 Score=60.43 Aligned_cols=75 Identities=23% Similarity=0.341 Sum_probs=59.0
Q ss_pred cCCcCccCeEEecCCCcceEEEEeCCCChhhhcCCCCCCEEEEECCeeCCCcCHHHHHHHHcCCCCeEEEEEEeCcc
Q psy3835 1244 TRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVE 1320 (1659)
Q Consensus 1244 k~~~~~lGi~l~gg~~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~r~~~ 1320 (1659)
+....++|+.........+-|-.|.++++|.++.|.+||++++|||++++. ..++...++...+.+...+.++..
T Consensus 382 ~~~s~~ig~vf~~~~~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s--~~q~~~~~~s~~~~~~~l~~~~~~ 456 (1051)
T KOG3532|consen 382 YDVSSPIGLVFDKNTNRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIRS--ERQATRFLQSTTGDLTVLVERSLD 456 (1051)
T ss_pred ccccCceeEEEecCCceEEEEEEecCCChhhHhcCCCcceEEEecCccchh--HHHHHHHHHhcccceEEEEeeccc
Confidence 344556777665444457889999999999999999999999999999974 456667777788888887777543
No 413
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=92.57 E-value=0.32 Score=54.22 Aligned_cols=96 Identities=15% Similarity=0.163 Sum_probs=59.2
Q ss_pred HHHHHHHcCC---CeEEEEcChhHHHHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHH
Q psy3835 1540 AVKDACDKNN---AHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLKI 1616 (1659)
Q Consensus 1540 ~V~~v~~~~g---k~~iLdi~~~~~~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~~~ 1616 (1659)
.+.+.++. . +.||+|+-.---..+. ..+-.+|||..|. +...+|+. .|+..+.+++..++..-..
T Consensus 95 ~~~~~~~~-~~~~~~vv~e~pll~e~~~~--~~~D~vi~V~a~~-e~~~~Rl~-------~R~~~s~e~~~~ri~~Q~~- 162 (194)
T PRK00081 95 EILEQLQE-AESSPYVVLDIPLLFENGLE--KLVDRVLVVDAPP-ETQLERLM-------ARDGLSEEEAEAIIASQMP- 162 (194)
T ss_pred HHHHHHHH-cccCCEEEEEehHhhcCCch--hhCCeEEEEECCH-HHHHHHHH-------HcCCCCHHHHHHHHHHhCC-
Confidence 34444444 3 6788887642111111 2234778888764 44444544 3456777888888764222
Q ss_pred HHHcCCcceEEEeCCCCHHHHHHHHHHHHHh
Q psy3835 1617 ECEHKHYISAVIPAGVNIAYMCTQIQTAVEL 1647 (1659)
Q Consensus 1617 e~~~~~~fd~vi~n~~~~~~~~~~l~~ii~~ 1647 (1659)
........|++|.|+++++.+..++..++..
T Consensus 163 ~~~~~~~ad~vI~N~g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 163 REEKLARADDVIDNNGDLEELRKQVERLLQE 193 (194)
T ss_pred HHHHHHhCCEEEECCCCHHHHHHHHHHHHHh
Confidence 2334446799999988999999999988753
No 414
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=92.46 E-value=49 Score=44.00 Aligned_cols=32 Identities=13% Similarity=-0.161 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 296 HNETVRRGDHTLKELEYYRGQHQAAMAQLEAA 327 (1659)
Q Consensus 296 ~~E~~~rl~~le~El~~l~~~l~el~~~l~~l 327 (1659)
+..+....+.+......+..-+.+....+..|
T Consensus 24 i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L 55 (683)
T PF08580_consen 24 IPTAFNAVKALSGAAEQILDWIQKAKDVLYGL 55 (683)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555554444444444
No 415
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=92.36 E-value=0.91 Score=54.30 Aligned_cols=124 Identities=11% Similarity=0.104 Sum_probs=72.4
Q ss_pred CcEEEECCCh---HHHHHHHhhhCCCcccccccceecCChHHHHHhccCCceEEEEEe--C---C-eeeeecHHHHHHHH
Q psy3835 1475 RPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMHCPQAAMEKGLADNLFVDYRKK--G---A-YFECTSVAAVKDAC 1545 (1659)
Q Consensus 1475 RpvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttrvs~~~f~~~i~~~~flE~~~~--~---g-~~YGts~~~V~~v~ 1545 (1659)
+.|||+||+| +|+.++|.+.++. | ..++.+.+..++....- ++.+ . + ..+..-...+.+.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~-~-------~~l~~D~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l 72 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPK-A-------VNVNRDDLRQSLFGHGE--WGEYKFTKEKEDLVTKAQEAAALAAL 72 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCC-C-------EEEeccHHHHHhcCCCc--ccccccChHHHHHHHHHHHHHHHHHH
Confidence 5688889998 9999999887642 1 22455566555432210 1111 0 0 11222334566677
Q ss_pred HcCCCeEEEEcChhHHH---HH----HhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHH
Q psy3835 1546 DKNNAHVILDVSLAGVE---RL----HRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLK 1615 (1659)
Q Consensus 1546 ~~~gk~~iLdi~~~~~~---~l----~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~~ 1615 (1659)
.. |..||+|..+-... .+ +.......+||+.+ +.+++.+|.. .| ......++.++.|+++...
T Consensus 73 ~~-g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~-~~e~~~~R~~---~R--~~~~~~~~~i~~~~~~~~~ 142 (300)
T PHA02530 73 KS-GKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDV-PVEELVKRNR---KR--GERAVPEDVLRSMFKQMKE 142 (300)
T ss_pred Hc-CCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCC-CHHHHHHHHH---cc--CcCCCCHHHHHHHHHHHHH
Confidence 88 99999996543222 22 22234455778777 6888888877 34 2234567778877766544
No 416
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.11 E-value=2.1 Score=47.80 Aligned_cols=21 Identities=5% Similarity=0.148 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3835 409 AVDKLELAQEEVARIKKQCED 429 (1659)
Q Consensus 409 ~~~~le~leeel~~lk~e~~~ 429 (1659)
...++..++.++++++.++++
T Consensus 91 ~~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544444
No 417
>KOG4403|consensus
Probab=92.05 E-value=19 Score=43.16 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3835 579 KECNDLRERFGEFTAA 594 (1659)
Q Consensus 579 eE~e~l~er~~e~~~~ 594 (1659)
..+-+++..+++....
T Consensus 397 ~kIleak~al~evtt~ 412 (575)
T KOG4403|consen 397 HKILEAKSALSEVTTL 412 (575)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 418
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=91.97 E-value=40 Score=41.86 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=11.6
Q ss_pred hhhhHHHHHhhhhHhhhhhhhhhh
Q psy3835 621 KERNEVEAASMDLFGKCQKERMDN 644 (1659)
Q Consensus 621 ~~~~~~~~~~~~l~~~~~~~~~~~ 644 (1659)
.++..+...+..|.+.+..++..+
T Consensus 324 ~Ev~~l~~~i~~L~~~L~~a~~~l 347 (384)
T PF03148_consen 324 EEVKELRESIEALQEKLDEAEASL 347 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555544433
No 419
>PRK12704 phosphodiesterase; Provisional
Probab=91.97 E-value=32 Score=44.34 Aligned_cols=8 Identities=0% Similarity=-0.164 Sum_probs=3.7
Q ss_pred CCCCCCCC
Q psy3835 761 NPPSYKVN 768 (1659)
Q Consensus 761 ~~g~l~~G 768 (1659)
.||+++|.
T Consensus 275 ~dg~i~P~ 282 (520)
T PRK12704 275 QDGRIHPA 282 (520)
T ss_pred hcCCcCCC
Confidence 34444444
No 420
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=91.94 E-value=0.32 Score=56.00 Aligned_cols=58 Identities=21% Similarity=0.374 Sum_probs=52.4
Q ss_pred cCceEEEEeCCCChhhhcCCCCCCCEEEEeCCcccCCcccHHHHHHHHhcCC--CeEEEEEEccC
Q psy3835 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP--DVLTITTLKPT 892 (1659)
Q Consensus 830 ~~gi~I~~v~~gs~A~~~g~L~~GD~Il~ing~~v~~~~~~~ea~~~l~~~~--~~v~l~v~r~~ 892 (1659)
..|+|+..+..+|||. |.|..||.|++|||.++.+ .++...++++.. +.|+|.+.|+.
T Consensus 129 y~gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~s---~~e~i~~v~~~k~Gd~VtI~~~r~~ 188 (342)
T COG3480 129 YAGVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFTS---SDELIDYVSSKKPGDEVTIDYERHN 188 (342)
T ss_pred EeeEEEEEccCCcchh--ceeccCCeEEeeCCeecCC---HHHHHHHHhccCCCCeEEEEEEecc
Confidence 3789999999999998 6799999999999999999 899999998864 89999999865
No 421
>KOG1738|consensus
Probab=91.90 E-value=0.21 Score=62.25 Aligned_cols=72 Identities=28% Similarity=0.280 Sum_probs=60.5
Q ss_pred cCCCCcCeEe----cCceEEEEeCCCChhhhcCCCCCCCEEEEeCCcccCCcccHHHHHHHHhcCCCeEEEEEEccC
Q psy3835 820 NNSYDHGLTL----ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKPT 892 (1659)
Q Consensus 820 ~~~~~lG~~~----~~gi~I~~v~~gs~A~~~g~L~~GD~Il~ing~~v~~~~~~~ea~~~l~~~~~~v~l~v~r~~ 892 (1659)
+.+.|+|+-| .+..+|.++.++|||+.++.|..||.|+.||+..+.+ ..+.-++.-|...+..|.++|....
T Consensus 210 kp~eglg~~I~Ssydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVg-wqlk~vV~sL~~~~sgi~l~lkKrp 285 (638)
T KOG1738|consen 210 SPSEGLGLYIDSSYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVG-WQLKVVVSSLRETPAGIELTLKKRP 285 (638)
T ss_pred CcccCCceEEeeecCCceeccccccCChHHHhhcccCccceeeeccccccc-chhHhHHhhcccCcccceeeeeccC
Confidence 4567888866 4567999999999999999999999999999999999 8999999999888865665554443
No 422
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=91.76 E-value=0.65 Score=51.58 Aligned_cols=158 Identities=15% Similarity=0.065 Sum_probs=76.4
Q ss_pred cEEEECCCh---HHHHHHHhhhCCCcccccc-----cceecCChHHHHHhccCCc------eEEEEEeCCeeeeecHHHH
Q psy3835 1476 PVILVGALS---DTVTDKLLQDFPDKFVRCA-----PEIMHCPQAAMEKGLADNL------FVDYRKKGAYFECTSVAAV 1541 (1659)
Q Consensus 1476 pvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v-----~~Ttrvs~~~f~~~i~~~~------flE~~~~~g~~YGts~~~V 1541 (1659)
.|+|.||.| +|+.++|.+..+. -++.+ |.++.+ -+.+...+.... +.++..+..++|....+.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~-~g~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 79 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA-RGYEVVLTREPGGTPI-GEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVI 79 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCCCCCch-HHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 578899997 8999988765432 11112 111111 233443333221 1111122233444445556
Q ss_pred HHHHHcCCCeEEEE------cC---------hhHHHHHHh---cCCcc-EEEEEecCCHHHHHHHHhhhccccCCCCccc
Q psy3835 1542 KDACDKNNAHVILD------VS---------LAGVERLHR---QHVYP-IVLLIKFKSTKQIKEIKEIRDGRYSSLDKVT 1602 (1659)
Q Consensus 1542 ~~v~~~~gk~~iLd------i~---------~~~~~~l~~---~~~~p-ivIfI~pps~~~l~~~~~~~~~r~~~~~~~~ 1602 (1659)
...+.. |.++|+| +- ..-+..|.. ..+.| ++||+..| .+.+.+|+. .| +...
T Consensus 80 ~~~~~~-~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~R~~---~R----~~~~ 150 (200)
T cd01672 80 KPALAR-GKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDID-PEVGLARIE---AR----GRDD 150 (200)
T ss_pred HHHHhC-CCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHHH---hc----CCcc
Confidence 666778 9999999 11 122233322 22334 66777775 477777766 23 2211
Q ss_pred H-----HHHHHHHHHHHHHHHHcCC-cceEEEeC-CCCHHHHHHHHHHHHH
Q psy3835 1603 A-----KAAKEMYEHGLKIECEHKH-YISAVIPA-GVNIAYMCTQIQTAVE 1646 (1659)
Q Consensus 1603 ~-----~~~~~~~~~a~~~e~~~~~-~fd~vi~n-~~~~~~~~~~l~~ii~ 1646 (1659)
. .+..+.+.... +....+ ....+++| +.+++..++++..+|.
T Consensus 151 ~~~~~~~~~~~~~~~~y--~~~~~~~~~~~~~id~~~~~e~i~~~i~~~i~ 199 (200)
T cd01672 151 RDEQEGLEFHERVREGY--LELAAQEPERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred hhhhhhHHHHHHHHHHH--HHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHh
Confidence 1 12222222211 111111 12344444 3578888888888774
No 423
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.68 E-value=2.5 Score=47.19 Aligned_cols=10 Identities=10% Similarity=-0.031 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy3835 377 HYMSALNKYE 386 (1659)
Q Consensus 377 ~~~~le~~le 386 (1659)
.+.+++.+++
T Consensus 94 rlp~le~el~ 103 (206)
T PRK10884 94 RVPDLENQVK 103 (206)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 424
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=91.64 E-value=12 Score=44.31 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3835 647 ANQEIDRLRKHTDKLQAEL 665 (1659)
Q Consensus 647 ~~~Ele~lr~~l~~l~~el 665 (1659)
++++|..++=++.+..+++
T Consensus 281 anrqisd~KfKl~KaEQei 299 (302)
T PF09738_consen 281 ANRQISDYKFKLQKAEQEI 299 (302)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4555555555555555444
No 425
>PF14992 TMCO5: TMCO5 family
Probab=91.54 E-value=9.4 Score=44.08 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3835 326 AAAQESSSLRSKYSDLISDKQRLDRELLELR 356 (1659)
Q Consensus 326 ~lk~e~~~l~~e~~el~~e~~~Le~el~~lk 356 (1659)
.+.++...+-.++.+.+..++.|+.++....
T Consensus 15 ~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~ 45 (280)
T PF14992_consen 15 RLDEANQSLLQKIQEKEGAIQSLEREITKMD 45 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334444444556666666666666666654
No 426
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=91.53 E-value=3 Score=38.14 Aligned_cols=13 Identities=8% Similarity=0.337 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q psy3835 495 KDLKRLTEERNAA 507 (1659)
Q Consensus 495 ~eleelkee~~~~ 507 (1659)
.+...+...+..+
T Consensus 39 ~e~~~~~~~r~~L 51 (79)
T PRK15422 39 QEVQNAQHQREEL 51 (79)
T ss_pred HHHHHHHhhHHHH
Confidence 3333333333333
No 427
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=91.52 E-value=61 Score=43.12 Aligned_cols=17 Identities=12% Similarity=0.071 Sum_probs=9.1
Q ss_pred hhHhhhhHHHHHhhhhH
Q psy3835 618 SSRKERNEVEAASMDLF 634 (1659)
Q Consensus 618 ~~~~~~~~~~~~~~~l~ 634 (1659)
++..++.+++..++.+.
T Consensus 349 ~L~~rW~~L~~~~d~~L 365 (683)
T PF08580_consen 349 DLAQRWLELKEDMDSLL 365 (683)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 55556666654444443
No 428
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=91.44 E-value=23 Score=42.10 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 575 DKALKECNDLRERFGEFTAAKEECQRE 601 (1659)
Q Consensus 575 ~~aieE~e~l~er~~e~~~~~~e~q~e 601 (1659)
.++..-+-.+.-|++.+.-.++..|.+
T Consensus 315 qEaLrlLgglggRldgflgqWERaQ~e 341 (558)
T PF15358_consen 315 QEALRLLGGLGGRLDGFLGQWERAQRE 341 (558)
T ss_pred HHHHHHHhhcCchhhhHHHHHHHHHHH
Confidence 344444555556666666666655555
No 429
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=91.37 E-value=49 Score=41.68 Aligned_cols=24 Identities=0% Similarity=-0.191 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 479 AVKEINTAMAVRMKATKDLKRLTE 502 (1659)
Q Consensus 479 le~el~~l~~~l~~~~~eleelke 502 (1659)
+..-+.++++.+..+++.+++...
T Consensus 138 l~~ll~Pl~e~l~~f~~~v~~~~~ 161 (475)
T PRK10361 138 LNSLLSPLREQLDGFRRQVQDSFG 161 (475)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554443
No 430
>KOG4460|consensus
Probab=91.32 E-value=37 Score=42.12 Aligned_cols=24 Identities=8% Similarity=0.178 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Q psy3835 561 ETLKREIASALHDRDKALKECNDL 584 (1659)
Q Consensus 561 e~Lk~ei~~l~~~~~~aieE~e~l 584 (1659)
..++.-+.+++..+.+.+.+...+
T Consensus 712 ~~iqsiL~~L~~~i~~~~k~VK~i 735 (741)
T KOG4460|consen 712 KCIQSILKELGEHIREMVKQVKDI 735 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 431
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=91.31 E-value=11 Score=44.52 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy3835 553 KKTLSYQIETLKREI 567 (1659)
Q Consensus 553 ~~~l~~ele~Lk~ei 567 (1659)
.+.+..+|..|+.++
T Consensus 228 ke~L~~qv~klk~qL 242 (302)
T PF09738_consen 228 KEELLEQVRKLKLQL 242 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 432
>KOG2196|consensus
Probab=91.22 E-value=29 Score=38.90 Aligned_cols=9 Identities=11% Similarity=0.405 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy3835 562 TLKREIASA 570 (1659)
Q Consensus 562 ~Lk~ei~~l 570 (1659)
.+.+.++.+
T Consensus 237 ~~e~k~d~i 245 (254)
T KOG2196|consen 237 QLEKKLDKI 245 (254)
T ss_pred HHHHHHHHH
Confidence 333333333
No 433
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=91.19 E-value=47 Score=42.78 Aligned_cols=7 Identities=0% Similarity=-0.173 Sum_probs=3.6
Q ss_pred CCCCCCC
Q psy3835 761 NPPSYKV 767 (1659)
Q Consensus 761 ~~g~l~~ 767 (1659)
.||+|+|
T Consensus 269 ~dgrihp 275 (514)
T TIGR03319 269 QDGRIHP 275 (514)
T ss_pred HcCCCCH
Confidence 4555544
No 434
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=91.14 E-value=13 Score=42.90 Aligned_cols=65 Identities=15% Similarity=0.246 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3835 530 EDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAA 594 (1659)
Q Consensus 530 ~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~~ 594 (1659)
.++...+..+..+..+-..+...++.-+.+++..++.++.+..+++..-+||+.+.+++.++...
T Consensus 176 ~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~ 240 (267)
T PF10234_consen 176 QQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEI 240 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444555566777888888888899999999999888766666553
No 435
>PRK14530 adenylate kinase; Provisional
Probab=91.08 E-value=1.5 Score=49.75 Aligned_cols=51 Identities=16% Similarity=0.036 Sum_probs=32.0
Q ss_pred CCCcccHHHHHHHHHHHHH----HHHHcCCcceEEEeCC-CCHHHHHHHHHHHHHh
Q psy3835 1597 SLDKVTAKAAKEMYEHGLK----IECEHKHYISAVIPAG-VNIAYMCTQIQTAVEL 1647 (1659)
Q Consensus 1597 ~~~~~~~~~~~~~~~~a~~----~e~~~~~~fd~vi~n~-~~~~~~~~~l~~ii~~ 1647 (1659)
.|...+++.+++++..-.+ +...|....-++.+|. .+++..++.|..+|..
T Consensus 158 ~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 213 (215)
T PRK14530 158 QRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD 213 (215)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 4556678888888855433 3334443222334443 4899999999988854
No 436
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=91.05 E-value=55 Score=41.74 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3835 326 AAAQESSSLRSKYSDLISDKQRLDRELLELR 356 (1659)
Q Consensus 326 ~lk~e~~~l~~e~~el~~e~~~Le~el~~lk 356 (1659)
..+....-+..++.++..++...+.......
T Consensus 192 ~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~ 222 (458)
T COG3206 192 AFRRASDSLDERLEELRARLQEAEAQVEDFR 222 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555554444
No 437
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=91.01 E-value=22 Score=39.02 Aligned_cols=6 Identities=17% Similarity=0.567 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy3835 559 QIETLK 564 (1659)
Q Consensus 559 ele~Lk 564 (1659)
++..++
T Consensus 149 ~v~~lR 154 (182)
T PF15035_consen 149 EVVALR 154 (182)
T ss_pred HHHHHH
Confidence 333333
No 438
>PRK10698 phage shock protein PspA; Provisional
Probab=90.92 E-value=33 Score=39.00 Aligned_cols=43 Identities=14% Similarity=0.085 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3835 314 RGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELR 356 (1659)
Q Consensus 314 ~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk 356 (1659)
...+.++...+..++..+.........++.++..++.....+.
T Consensus 30 ~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e 72 (222)
T PRK10698 30 RLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQ 72 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555555555555555554
No 439
>KOG4787|consensus
Probab=90.80 E-value=53 Score=41.06 Aligned_cols=35 Identities=9% Similarity=-0.052 Sum_probs=24.5
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 285 STQTMPLYVRQHNETVRRGDHTLKELEYYRGQHQA 319 (1659)
Q Consensus 285 ~~~Ele~L~~q~~E~~~rl~~le~El~~l~~~l~e 319 (1659)
+..+++-++.+++-+..+.+.++++.+-+...+.+
T Consensus 330 ~~~Q~~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~ 364 (852)
T KOG4787|consen 330 AHLQLELAESQVQHLNTKIERLEKTNDHLNKKIVE 364 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 66677777777777777777777776655555443
No 440
>KOG0162|consensus
Probab=90.75 E-value=0.17 Score=63.02 Aligned_cols=50 Identities=30% Similarity=0.563 Sum_probs=40.2
Q ss_pred eeeeccccCCCCCccccccccCCcEEEEecCCCCCCCCcEEEEEeccCCCcccccCcCChh
Q psy3835 1334 YMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKY 1394 (1659)
Q Consensus 1334 yvra~f~y~~~~~~~~~L~f~~gdil~v~~t~~~~~~~~W~a~~v~~~~~~~~~GlIPs~~ 1394 (1659)
-.+|.++|.+.+.+ +|+|++|||+.|+. .+..|||++.. + +..|++|..+
T Consensus 1053 ~~~A~Y~y~gq~~d--Els~~~~diIei~~---edpSGWw~gk~---~---~keG~~P~~Y 1102 (1106)
T KOG0162|consen 1053 VCEALYDYPGQDVD--ELSFKKGDIIEIMR---EDPSGWWLGKL---N---GKEGLFPGNY 1102 (1106)
T ss_pred ceeeeccCCCCCcc--cccccCCCEEEEec---cCCCcchhhcc---C---Cccccccccc
Confidence 36889999988656 99999999999998 36669999872 2 3589999764
No 441
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=90.74 E-value=0.52 Score=62.10 Aligned_cols=311 Identities=18% Similarity=0.192 Sum_probs=0.0
Q ss_pred ccccchhhccchHH-----------HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 279 RKSVNSSTQTMPLY-----------VRQHN------ETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDL 341 (1659)
Q Consensus 279 ~~~i~~~~~Ele~L-----------~~q~~------E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el 341 (1659)
...|..+..|++.| ...+. +....+.+..+.. .+...+..+...++.+..+...-..++.++
T Consensus 32 ~~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~-~L~~~~~~L~~~le~l~~~~~eR~~~~~~L 110 (619)
T PF03999_consen 32 LQSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSM-PLKEQLPKLRPQLEELRKEKEERMQEFKEL 110 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhcccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhh--ccCCCCCcccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH------
Q psy3835 342 ISDKQRLDRELLELRS--GCCTQPESDDA--GSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVD------ 411 (1659)
Q Consensus 342 ~~e~~~Le~el~~lk~--~~~~~e~~~~~--~~~~~l~~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~------ 411 (1659)
..+++.+..++...-. .........+- ..++.+...+..+..+...-..++..+...+..+-..+...-.
T Consensus 111 ~~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~ 190 (619)
T PF03999_consen 111 QEQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDPERTSFEK 190 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccchh
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy3835 412 ----------KLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQ-HEDAV 480 (1659)
Q Consensus 412 ----------~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~el~~e-ieele 480 (1659)
...-..+.+..|+..+..+..+.......+..|..++..|=..+..-..+.+.+-.....+... +..++
T Consensus 191 ~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~ 270 (619)
T PF03999_consen 191 DLLSYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALE 270 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH------hhhhHH
Q psy3835 481 KEINTAMAVRMKATKDL-KRLTEERNAAMQEYSLIMSERDSVHKEMEKLSED--LTQAVRKIKTLEME------NKELVE 551 (1659)
Q Consensus 481 ~el~~l~~~l~~~~~el-eelkee~~~~~~el~~l~~e~~~l~~el~~L~~e--l~ele~ki~~le~e------l~~l~~ 551 (1659)
.++..+.....+.-+++ .+++.++.++....-.-..++....-.......+ |...+.++.+++.. +-++..
T Consensus 271 ~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~ 350 (619)
T PF03999_consen 271 EELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLKEEYESRKPILELVE 350 (619)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHH--------------------HHHhhhHHHHHHHHHHHHHHHHH
Q psy3835 552 DKKTLSYQIETLKREI--------------------ASALHDRDKALKECNDLRERFGE 590 (1659)
Q Consensus 552 e~~~l~~ele~Lk~ei--------------------~~l~~~~~~aieE~e~l~er~~e 590 (1659)
+.+.+..+...|+..- ..+......+++++...-..|++
T Consensus 351 k~~~l~~~~~~Le~~~~D~~Rl~~RGg~LLkEEk~rk~i~k~lPkle~~L~~~l~~wE~ 409 (619)
T PF03999_consen 351 KWESLWEEMEELEESSKDPSRLNNRGGHLLKEEKERKRIQKKLPKLEEELKKKLEEWEE 409 (619)
T ss_dssp HHHHHHHHHHHHHHHHH-CCGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChhhhcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
No 442
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=90.71 E-value=22 Score=36.63 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3835 472 VQQQHEDAVKEINTAMA 488 (1659)
Q Consensus 472 l~~eieele~el~~l~~ 488 (1659)
++..|+....+|..+..
T Consensus 89 vRkkID~vNreLkpl~~ 105 (159)
T PF04949_consen 89 VRKKIDSVNRELKPLGQ 105 (159)
T ss_pred HHHHHHHHHHHhhHHHH
Confidence 33333333344444433
No 443
>PRK13946 shikimate kinase; Provisional
Probab=90.70 E-value=2.4 Score=46.74 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=77.9
Q ss_pred CCCCcEEEECCCh---HHHHHHHhhhCCCcccccccceecCChHHHHHhccCC--c-eEEEEEeCCeeeeecHHHHHHHH
Q psy3835 1472 PVLRPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMHCPQAAMEKGLADN--L-FVDYRKKGAYFECTSVAAVKDAC 1545 (1659)
Q Consensus 1472 ~~~RpvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttrvs~~~f~~~i~~~--~-flE~~~~~g~~YGts~~~V~~v~ 1545 (1659)
-+.+.|+|+|++| +||-+.|-+...-.|.. +. ..+++..... . |-+|++ ..+.-.....+..++
T Consensus 8 ~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id--~D------~~~~~~~g~~~~e~~~~~ge--~~~~~~e~~~l~~l~ 77 (184)
T PRK13946 8 LGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLD--AD------TEIERAARMTIAEIFAAYGE--PEFRDLERRVIARLL 77 (184)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHcCCCeEC--cC------HHHHHHhCCCHHHHHHHHCH--HHHHHHHHHHHHHHH
Confidence 3567899999887 88888887653211221 11 0111111000 0 001111 111122345666777
Q ss_pred HcCCCeEEEEc------ChhHHHHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHH
Q psy3835 1546 DKNNAHVILDV------SLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLKIECE 1619 (1659)
Q Consensus 1546 ~~~gk~~iLdi------~~~~~~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~~~e~~ 1619 (1659)
.. +. ||+.. .+.....|+. ..++|||..| .+.+.+|+..+..|.........+.++++++.- +..
T Consensus 78 ~~-~~-~Vi~~ggg~~~~~~~r~~l~~---~~~~v~L~a~-~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R---~~~ 148 (184)
T PRK13946 78 KG-GP-LVLATGGGAFMNEETRAAIAE---KGISVWLKAD-LDVLWERVSRRDTRPLLRTADPKETLARLMEER---YPV 148 (184)
T ss_pred hc-CC-eEEECCCCCcCCHHHHHHHHc---CCEEEEEECC-HHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHH---HHH
Confidence 66 64 55543 3444444443 4688999985 576766665111110000111122333333322 223
Q ss_pred cCCcceEEEeCC-CCHHHHHHHHHHHHHhhc
Q psy3835 1620 HKHYISAVIPAG-VNIAYMCTQIQTAVELEQ 1649 (1659)
Q Consensus 1620 ~~~~fd~vi~n~-~~~~~~~~~l~~ii~~~~ 1649 (1659)
|.. +|.+|..+ .+++.++..|...|....
T Consensus 149 y~~-~dl~i~~~~~~~~~~~~~i~~~i~~~~ 178 (184)
T PRK13946 149 YAE-ADLTVASRDVPKEVMADEVIEALAAYL 178 (184)
T ss_pred HHh-CCEEEECCCCCHHHHHHHHHHHHHHhh
Confidence 443 68887544 577888888888886543
No 444
>KOG0515|consensus
Probab=90.69 E-value=0.13 Score=61.87 Aligned_cols=54 Identities=26% Similarity=0.338 Sum_probs=41.2
Q ss_pred eeeeccccCCCCCccccccccCCcEEEEecCCCCCCCCcEEEEEeccCCCcccccCcCChhH
Q psy3835 1334 YMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYK 1395 (1659)
Q Consensus 1334 yvra~f~y~~~~~~~~~L~f~~gdil~v~~t~~~~~~~~W~a~~v~~~~~~~~~GlIPs~~~ 1395 (1659)
-|=|++||.+..++ +|+|+.||-|-|+-.-...+.+||.|+.-|. .|.+|-..+
T Consensus 685 ~vYAlwdYeaqf~D--ELsf~eGd~lTvirr~d~~eteWWwa~lng~------eGyVPRnyl 738 (752)
T KOG0515|consen 685 VVYALWDYEAQFED--ELSFDEGDELTVIRRDDEVETEWWWARLNGE------EGYVPRNYL 738 (752)
T ss_pred eeEEeecccccccc--cccccCCceeEEEecCCcchhhhhhHhhcCc------ccccchhhh
Confidence 46799999999988 9999999999998753345558999874443 566666543
No 445
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.65 E-value=18 Score=42.10 Aligned_cols=137 Identities=16% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHH
Q psy3835 497 LKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDK 576 (1659)
Q Consensus 497 leelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~ 576 (1659)
++.+.+......+.-...+++.+++..+...+..++..+..+++.++.....+.......++++..|+++++.+.....+
T Consensus 23 ~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~ 102 (251)
T PF11932_consen 23 LDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQE 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhcccchhhHhhhhHHHHHhhhh
Q psy3835 577 ALKECNDLRERFGEFTA-----AKEECQREAFHARFEYAMRMGERDSSRKERNEVEAASMDL 633 (1659)
Q Consensus 577 aieE~e~l~er~~e~~~-----~~~e~q~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 633 (1659)
+.--+...-..++.... ...+....+..++..+..-+....+.-+.+-++=....++
T Consensus 103 l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~dv~~~ek~r~vlea~~~E~~y 164 (251)
T PF11932_consen 103 LVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLDDADVSLAEKFRRVLEAYQIEMEY 164 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHh
No 446
>PRK14531 adenylate kinase; Provisional
Probab=90.64 E-value=4.8 Score=44.35 Aligned_cols=153 Identities=12% Similarity=0.039 Sum_probs=0.0
Q ss_pred CCcEEEECCCh---HHHHHHHhhhCCCcccccccceec-------CChHHHHHhccCCceEEEEEeCCeeeeecHHHHHH
Q psy3835 1474 LRPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMH-------CPQAAMEKGLADNLFVDYRKKGAYFECTSVAAVKD 1543 (1659)
Q Consensus 1474 ~RpvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttr-------vs~~~f~~~i~~~~flE~~~~~g~~YGts~~~V~~ 1543 (1659)
++-|+|+||+| +|+.++|.+.+ +.-..+....-| -.-..+...+..|.++ +-+-+..
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~-g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v------------~d~l~~~ 68 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAH-GLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELV------------SDALVLA 68 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh-CCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCC------------CHHHHHH
Q ss_pred HHH------cCCCeEEEEcChhHHHH-------HHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHH
Q psy3835 1544 ACD------KNNAHVILDVSLAGVER-------LHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMY 1610 (1659)
Q Consensus 1544 v~~------~~gk~~iLdi~~~~~~~-------l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~ 1610 (1659)
++. . ++.+|||=-|....+ +......|..|+..-.+.+.+.+|+. .| .+..++++.+.+++
T Consensus 69 ~~~~~l~~~~-~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~---~R--~r~dD~~e~i~~Rl 142 (183)
T PRK14531 69 IVESQLKALN-SGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLL---AR--GRADDNEAVIRNRL 142 (183)
T ss_pred HHHHHHhhcc-CCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhh---cC--CCCCCCHHHHHHHH
Q ss_pred HHHHHHHHHcCCcce-----EEEeCCCCHHHHHHHHHHHH
Q psy3835 1611 EHGLKIECEHKHYIS-----AVIPAGVNIAYMCTQIQTAV 1645 (1659)
Q Consensus 1611 ~~a~~~e~~~~~~fd-----~vi~n~~~~~~~~~~l~~ii 1645 (1659)
+.-.+.....-.+|. ++|.++.+++..+.+|...+
T Consensus 143 ~~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 143 EVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
No 447
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.62 E-value=4.2 Score=37.26 Aligned_cols=73 Identities=8% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 427 CEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKR 499 (1659)
Q Consensus 427 ~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~elee 499 (1659)
++.++.++..+...|.-|+-++++++.+...+..+...+......+..+...++.+...+++++..+-..+++
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~~ 78 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEE 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 448
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=90.62 E-value=44 Score=39.84 Aligned_cols=256 Identities=12% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH
Q psy3835 374 LNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEK-------------NTALRE 440 (1659)
Q Consensus 374 l~~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~-------------~~l~~e 440 (1659)
+-..+-+...++... .....+...+.++..........+...++.+.....+-..+..+. ..+..+
T Consensus 7 lP~~l~~~~~~v~~~-~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~ 85 (296)
T PF13949_consen 7 LPPSLLEKSEEVRSE-GGIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKE 85 (296)
T ss_dssp --HHHHHHHHHHHHT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHH
T ss_pred CChHHHHHHHHHHhC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Q psy3835 441 RNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAM-----------AVRMKATKDLKRLTEERNAAMQ 509 (1659)
Q Consensus 441 i~~L~~el~~l~~~~~~l~~el~~l~~~l~el~~eieele~el~~l~-----------~~l~~~~~eleelkee~~~~~~ 509 (1659)
+..++.-+..+...-..+...+......+.-|..-...+...+.... ..+..+-.++++++.++..+..
T Consensus 86 l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~~~~~~~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~ 165 (296)
T PF13949_consen 86 LQKYREYLEQASESDSQLRSKLESIEENLELLSGPIEELEASLPSSSPSDSPQVSEVIRQLRELLNKLEELKKEREELLE 165 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHS--B---SSGSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChhhHHhhCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy3835 510 EYSLIMSERDSVHKEME--------KLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKEC 581 (1659)
Q Consensus 510 el~~l~~e~~~l~~el~--------~L~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~ 581 (1659)
++.. .-+-+.+..-+. ..+.=..+.-.+...+...+.........+-++|..+..++.......... .+.
T Consensus 166 ~lk~-~~~~d~i~~~l~~~~~~~~~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~~~~~~~-~~r 243 (296)
T PF13949_consen 166 QLKE-KLQNDDISKLLSELNKNGSADFEALFEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQSRKSDQEQ-KER 243 (296)
T ss_dssp HHHH------HHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SHHH-HHH
T ss_pred HHHH-HHhhccHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH-HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhhHHHHHhhh
Q psy3835 582 NDLRERFGEFTAAKEECQREAFHARFEYAMRMGERDSSRKERNEVEAASMD 632 (1659)
Q Consensus 582 e~l~er~~e~~~~~~e~q~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1659)
+.+-.++........++...+.+-..=|..+...+......+.+.-.+...
T Consensus 244 ~~~~~~l~~a~~~y~el~~~l~eG~~FY~~L~~~~~~l~~~~~~f~~~R~~ 294 (296)
T PF13949_consen 244 ESALQRLEAAYDAYKELSSNLEEGLKFYNDLLEILNKLQQKVEDFCNARRE 294 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 449
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=90.59 E-value=1.9 Score=47.02 Aligned_cols=153 Identities=11% Similarity=0.059 Sum_probs=0.0
Q ss_pred CCcEEEECCCh---HHHHHHHhhhCCCcccccccceecCChHHHHH-----hccCCceEEEE-------EeCCeeeeecH
Q psy3835 1474 LRPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMHCPQAAMEK-----GLADNLFVDYR-------KKGAYFECTSV 1538 (1659)
Q Consensus 1474 ~RpvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttrvs~~~f~~-----~i~~~~flE~~-------~~~g~~YGts~ 1538 (1659)
.+.|+|-|||. +||.+.|.+.+|.-|.. ++-+.|.. +...+.-++|+ .....+|-.-.
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~-------l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLH-------LSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMH 73 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEE-------EEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEE-------EecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHH
Q ss_pred HHHHHHHHcCCCeEEEE---cChhH-HHHH-HhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHH
Q psy3835 1539 AAVKDACDKNNAHVILD---VSLAG-VERL-HRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHG 1613 (1659)
Q Consensus 1539 ~~V~~v~~~~gk~~iLd---i~~~~-~~~l-~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a 1613 (1659)
.+|...++. |.++|+| .++.. ...+ +....+|++..---++.+++++|-+.+..|..+ +.+.
T Consensus 74 ~~iaa~a~a-G~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~~G------------~a~~ 140 (174)
T PF07931_consen 74 AAIAAMARA-GNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRPIG------------LAAW 140 (174)
T ss_dssp HHHHHHHHT-T-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTT------------HHHH
T ss_pred HHHHHHHhC-CCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcchH------------HHHH
Q ss_pred HHHHHHcCCcceEEEeCC-CCHHHHHHHHHHHHH
Q psy3835 1614 LKIECEHKHYISAVIPAG-VNIAYMCTQIQTAVE 1646 (1659)
Q Consensus 1614 ~~~e~~~~~~fd~vi~n~-~~~~~~~~~l~~ii~ 1646 (1659)
+.-...-...||..|... .+.+++.++|...++
T Consensus 141 q~~~Vh~~~~YDleVDTs~~sp~ecA~~I~~~~~ 174 (174)
T PF07931_consen 141 QAEHVHEGGRYDLEVDTSATSPEECAREILARLE 174 (174)
T ss_dssp HTTGGGTT---SEEEETTSS-HHHHHHHHHTT--
T ss_pred HHhhcccCCCCCEEEECCCCCHHHHHHHHHHHhC
No 450
>KOG4460|consensus
Probab=90.57 E-value=22 Score=44.04 Aligned_cols=161 Identities=12% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q psy3835 382 LNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQ----WDI 457 (1659)
Q Consensus 382 e~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~----~~~ 457 (1659)
++-++....=..+++..+..+...++...+++..+++++..+.+....+.++++.+....+.|.+.++.+-.. +..
T Consensus 573 EqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~ 652 (741)
T KOG4460|consen 573 EQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPV 652 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 458 ALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVR 537 (1659)
Q Consensus 458 l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ 537 (1659)
+..--.++.+++.-+..+...|..-++.++....+.+.-+.+..+.+... .+..-..++..++.-+.+|...+.+-..
T Consensus 653 l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~--~Y~l~~~Q~~~iqsiL~~L~~~i~~~~k 730 (741)
T KOG4460|consen 653 LSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKP--TYILSAYQRKCIQSILKELGEHIREMVK 730 (741)
T ss_pred chhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--cccccHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q psy3835 538 KIKTLEM 544 (1659)
Q Consensus 538 ki~~le~ 544 (1659)
+++..++
T Consensus 731 ~VK~i~~ 737 (741)
T KOG4460|consen 731 QVKDIRN 737 (741)
T ss_pred HHHHHHH
No 451
>PRK00106 hypothetical protein; Provisional
Probab=90.48 E-value=64 Score=41.51 Aligned_cols=179 Identities=12% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 408 TAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRER-NEYQEALAKVQQQHEDAVKEINTA 486 (1659)
Q Consensus 408 ~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el-~~l~~~l~el~~eieele~el~~l 486 (1659)
.+++..+..+-.+-..+.+..++.++-..--+.+. ++...+.+........+. +++.....+++.++.+-+.++...
T Consensus 25 ~~~~~~~~~~~~~~~A~~~A~~IleeAe~eAe~I~--keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~eEr~rL~qr 102 (535)
T PRK00106 25 KMKSAKEAAELTLLNAEQEAVNLRGKAERDAEHIK--KTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQI 102 (535)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHH---HHHHHHHH
Q psy3835 487 MAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKT---LSYQIETL 563 (1659)
Q Consensus 487 ~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~le~el~~l~~e~~~---l~~ele~L 563 (1659)
...+...++.|++..+.++....++...+.+++...++++.+..++.++..+....-.++..+..+--. +++--+++
T Consensus 103 E~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~l~~~~~~~~ 182 (535)
T PRK00106 103 ESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILAETENKL 182 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Q psy3835 564 KREIASALHDRDKALKECNDLRERF 588 (1659)
Q Consensus 564 k~ei~~l~~~~~~aieE~e~l~er~ 588 (1659)
+.+...+......-.++-.+.+.+.
T Consensus 183 ~~~~~~~i~~~e~~a~~~a~~~a~~ 207 (535)
T PRK00106 183 THEIATRIREAEREVKDRSDKMAKD 207 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 452
>KOG3834|consensus
Probab=90.45 E-value=1.4 Score=52.75 Aligned_cols=114 Identities=15% Similarity=0.249 Sum_probs=0.0
Q ss_pred CEEEEECCEeCCCCChHHHHHHHHhcCCeEEEEEEeCCCCCcceEEEEEeccCCCC---cCeEe---------cCceEEE
Q psy3835 769 DCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARSLVTTQLQLNNSYD---HGLTL---------ESGLYIC 836 (1659)
Q Consensus 769 D~Il~VNg~~~~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~~~~~~~~i~~~~~~~---lG~~~---------~~gi~I~ 836 (1659)
|-|+.|||+.+..- .++-..+|+..-..|+|+|.-. ....++.+.|......+ ||+++ ..-.-|-
T Consensus 38 dFIvSI~g~rL~~d-nd~Lk~llk~~sekVkltv~n~--kt~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl 114 (462)
T KOG3834|consen 38 DFIVSINGIRLNKD-NDTLKALLKANSEKVKLTVYNS--KTQEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVL 114 (462)
T ss_pred hhhheeCcccccCc-hHHHHHHHHhcccceEEEEEec--ccceeEEEEecccccccccccceEEEeccCccchhheeeee
Q ss_pred EeCCCChhhhcCCCCCCCEEEEeCCcccCCcccHHHHHHHHhcCC-CeEEEEE
Q psy3835 837 KISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP-DVLTITT 888 (1659)
Q Consensus 837 ~v~~gs~A~~~g~L~~GD~Il~ing~~v~~~~~~~ea~~~l~~~~-~~v~l~v 888 (1659)
+|.+.|||+++|....+|.|+-+-..-... .++-..+|.... +.+.|.|
T Consensus 115 ~V~p~SPaalAgl~~~~DYivG~~~~~~~~---~eDl~~lIeshe~kpLklyV 164 (462)
T KOG3834|consen 115 SVEPNSPAALAGLRPYTDYIVGIWDAVMHE---EEDLFTLIESHEGKPLKLYV 164 (462)
T ss_pred ecCCCCHHHhcccccccceEecchhhhccc---hHHHHHHHHhccCCCcceeE
No 453
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=90.42 E-value=0.87 Score=50.28 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=0.0
Q ss_pred eEEEEEecCCCCceEEEEecCCCcEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy3835 1129 LRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQY 1208 (1659)
Q Consensus 1129 ~~~v~l~k~~~~lG~sl~~~~~~gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r 1208 (1659)
++..-+.++..-+|+.+..+ .+++.....||+.||..+++|+.++++-...-...-+-..-..+.|+|.|
T Consensus 195 Irltpv~r~eki~Gyr~~pg----------kd~slF~~sglq~GDIavaiNnldltdp~~m~~llq~l~~m~s~qlTv~R 264 (275)
T COG3031 195 IRLTPVIRNEKIEGYRFEPG----------KDGSLFYKSGLQRGDIAVAINNLDLTDPEDMFRLLQMLRNMPSLQLTVIR 264 (275)
T ss_pred eEeeeEeeCCceEEEEecCC----------CCcchhhhhcCCCcceEEEecCcccCCHHHHHHHHHhhhcCcceEEEEEe
Q ss_pred cCC
Q psy3835 1209 SPD 1211 (1659)
Q Consensus 1209 ~~~ 1211 (1659)
++.
T Consensus 265 ~G~ 267 (275)
T COG3031 265 RGK 267 (275)
T ss_pred cCc
No 454
>KOG0972|consensus
Probab=90.25 E-value=9.3 Score=43.38 Aligned_cols=148 Identities=11% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 388 IKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQE 467 (1659)
Q Consensus 388 l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~ 467 (1659)
++......+-.+++...-.+...+.....+-.+..+..++...-+++.+.++- |..+++.+-.++..+..++.+++.
T Consensus 218 ~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~---lNnqL~~l~q~fr~a~~~lse~~e 294 (384)
T KOG0972|consen 218 LKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKS---LNNQLASLMQKFRRATDTLSELRE 294 (384)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3835 468 ALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMEN 546 (1659)
Q Consensus 468 ~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~le~el 546 (1659)
+.+.++.-..+-...+.+...+++.+++++++.-.....- +-+.++.+.+.+|.++..+...++.-++..+
T Consensus 295 ~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDG--------aplvkIkqavsKLk~et~~mnv~igv~ehs~ 365 (384)
T KOG0972|consen 295 KYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDG--------APLVKIKQAVSKLKEETQTMNVQIGVFEHSI 365 (384)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC--------chHHHHHHHHHHHHHHHHhhhhheehhhHHH
No 455
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=90.14 E-value=0.77 Score=60.48 Aligned_cols=380 Identities=15% Similarity=0.143 Sum_probs=0.0
Q ss_pred CCCCCCCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q psy3835 272 EHSPRVHRKSVNSSTQTMPLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSD--LISDKQRLD 349 (1659)
Q Consensus 272 ~~~~~~~~~~i~~~~~Ele~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~e--l~~e~~~Le 349 (1659)
.+....|....+++..--+.|...+....+.+..+-.++..-+..+......-.-.............. +...+..|.
T Consensus 11 ~~~~~~~~~~~ee~~~~~~~l~~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~L~~~~~~L~ 90 (619)
T PF03999_consen 11 IECLNVYMIKVEEANELKARLLQSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMPLKEQLPKLR 90 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhcccccchhhHHHHH
Q ss_pred HHHHHHhhccCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHH
Q psy3835 350 RELLELRSGCCTQPESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQ--EEVARIKKQC 427 (1659)
Q Consensus 350 ~el~~lk~~~~~~e~~~~~~~~~~l~~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~le--eel~~lk~e~ 427 (1659)
..++.+. ..+.+...++..+..+...+..++......+....-.-..+- +++..++..+
T Consensus 91 ~~le~l~-------------------~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l 151 (619)
T PF03999_consen 91 PQLEELR-------------------KEKEERMQEFKELQEQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHL 151 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 428 EDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAK----------VQQQHEDAVKEINTAMAVRMKATKDL 497 (1659)
Q Consensus 428 ~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~e----------l~~eieele~el~~l~~~l~~~~~el 497 (1659)
..+..+......++..+..+|..+-..+..--. .......+.. ....++.|+..+..+........+.+
T Consensus 152 ~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~-~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~ 230 (619)
T PF03999_consen 152 QRLQEEKERRLEEVRELREEIISLMEELGIDPE-RTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKL 230 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-cccchhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--------hhhhHHhHHHHHHHHHHHHHHHH
Q psy3835 498 KRLTEERNAAMQEYSLIMSERDSVHKEMEKLS-EDLTQAVRKIKTLEME--------NKELVEDKKTLSYQIETLKREIA 568 (1659)
Q Consensus 498 eelkee~~~~~~el~~l~~e~~~l~~el~~L~-~el~ele~ki~~le~e--------l~~l~~e~~~l~~ele~Lk~ei~ 568 (1659)
..+..++..+...++.-..+.+........+. .-+..++.++.+|+.. +.....++.++-..+---..+..
T Consensus 231 ~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~ 310 (619)
T PF03999_consen 231 QELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQ 310 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhhHHHHHhhhhHhhhhhhhhhhHHHH
Q psy3835 569 SALHDRDKALKECNDLRERFGEFTAAKEECQREAFHARFEYAMRMGERDSSRKERNEVEAASMDLFGKCQKERMDNLEAN 648 (1659)
Q Consensus 569 ~l~~~~~~aieE~e~l~er~~e~~~~~~e~q~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 648 (1659)
.......+.-. +++-+.++.....+.+.-.. ++.+-++..+..++-.+...+++...+-..-. ..-..+++-+
T Consensus 311 ~F~~~~~d~~~--E~lL~~hE~Ei~~Lk~~~~~----~k~Il~~v~k~~~l~~~~~~Le~~~~D~~Rl~-~RGg~LLkEE 383 (619)
T PF03999_consen 311 AFTPFYIDSYT--EELLELHEEEIERLKEEYES----RKPILELVEKWESLWEEMEELEESSKDPSRLN-NRGGHLLKEE 383 (619)
T ss_dssp --------------------------HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-CCGG-------HHHHH
T ss_pred HHHHHhcccch--HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhc-ccccHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhh
Q psy3835 649 QEIDRLRKHTDKLQAELQDQSVNYLFILTESIQEAEVSKRR 689 (1659)
Q Consensus 649 ~Ele~lr~~l~~l~~el~~~~~~~~~~l~e~~~e~~~~~~~ 689 (1659)
++-..+..++=.+..+| ...+.+.+....+
T Consensus 384 k~rk~i~k~lPkle~~L-----------~~~l~~wE~e~g~ 413 (619)
T PF03999_consen 384 KERKRIQKKLPKLEEEL-----------KKKLEEWEEEHGK 413 (619)
T ss_dssp HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHTS
T ss_pred HHHHHHHHHhhHHHHHH-----------HHHHHHHHHHcCC
No 456
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=90.14 E-value=60 Score=40.69 Aligned_cols=320 Identities=16% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh------ccCCCCCc
Q psy3835 293 VRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQ-ESSSLRSKYSDLISDKQRLDRELLELRS------GCCTQPES 365 (1659)
Q Consensus 293 ~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~-e~~~l~~e~~el~~e~~~Le~el~~lk~------~~~~~e~~ 365 (1659)
+..+..+...+........+......-+..++.-+.. -...+...+...+.....+..++..... ..+..-..
T Consensus 22 n~~~~~ar~~l~~~~~~~~k~~fl~~~l~~Q~~~L~~~~~~~~~~~~~~~~~~f~~l~~~ld~~~~~L~~~l~~Lr~t~v 101 (412)
T PF04108_consen 22 NEILTSARQSLEESVPLSAKTGFLRRGLKQQLKLLYKKVRSSLLIVYEWGQRDFKDLVKELDPADARLEQTLDMLRNTKV 101 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Q ss_pred cc-----------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHH--------
Q psy3835 366 DD-----------------AGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAV--DKLELAQE-------- 418 (1659)
Q Consensus 366 ~~-----------------~~~~~~l~~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~--~~le~lee-------- 418 (1659)
.. ....+.+++.+....+++..++..++....++......++..- ..+.....
T Consensus 102 ~~~~~~~~~~~ktL~DFVd~~~v~~L~~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 181 (412)
T PF04108_consen 102 PPFFRPPGEEPKTLYDFVDEDSVEILRENLKISIDELQAIQEQLDNSLLQFDNDLRKLKKQLINKRLKDYELLAPFQSSL 181 (412)
T ss_pred CccccCCCCCCCcHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccc
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 419 -----------EVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAM 487 (1659)
Q Consensus 419 -----------el~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~el~~eieele~el~~l~ 487 (1659)
-+..+-..+..++.+...+-+.+..-=++|..+..-.+.....-.+...-++-+...-.++..-+.+++
T Consensus 182 ~~~~~~~~s~~~~~~i~~~l~~le~ema~lL~sLt~HfDqC~~a~~~~eg~~~~~~e~~e~l~Vl~~Da~El~~V~~el~ 261 (412)
T PF04108_consen 182 GSSPSSSSSNPLMSTILKELHSLEQEMASLLESLTNHFDQCVTAVRHTEGEPMSEEERQEMLEVLENDAQELPDVVKELQ 261 (412)
T ss_pred CCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcchhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHH
Q psy3835 488 AVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREI 567 (1659)
Q Consensus 488 ~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei 567 (1659)
+.+...+......++-+......+..+......+...+......+......+..++...............++..|..=.
T Consensus 262 ~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~~~~~~~~~~~~~~~~i~~~~~~l~~L~~~Y 341 (412)
T PF04108_consen 262 ERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGERLPSYLAAFHDFEERWEEEKESIQAYIDELEQLCEFY 341 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3835 568 ASALHDRDKALKECNDLRERFGEFTAAKEECQREAFHARFEYAMR 612 (1659)
Q Consensus 568 ~~l~~~~~~aieE~e~l~er~~e~~~~~~e~q~e~~~~~~~~~~~ 612 (1659)
.........++.|...-+.-..........+..++.++..+-...
T Consensus 342 ~~F~~aY~~LL~Ev~RRr~~~~k~~~i~~~~~eeL~~l~eeE~~~ 386 (412)
T PF04108_consen 342 EGFLSAYDSLLLEVERRRAVRDKMKKIIREANEELDKLREEEQRR 386 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 457
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=90.12 E-value=39 Score=38.45 Aligned_cols=170 Identities=15% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 420 VARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKR 499 (1659)
Q Consensus 420 l~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~elee 499 (1659)
......-+++.+.-...+.+-+.+.+.++.++......+...-..++.++.+++...+.++..-..+-..-. +.--.+
T Consensus 12 ~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~--E~LAr~ 89 (225)
T COG1842 12 KANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN--EDLARE 89 (225)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy3835 500 LTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALK 579 (1659)
Q Consensus 500 lkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aie 579 (1659)
.-.+...+......++..+..+......+...+..++.++..++.+...+ .-.....+--+.+.+.+..... ..+..
T Consensus 90 al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l-~ar~~~akA~~~v~~~~~~~s~--~sa~~ 166 (225)
T COG1842 90 ALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL-KARKAAAKAQEKVNRSLGGGSS--SSAMA 166 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCc--hhhHH
Q ss_pred HHHHHHHHHHHHHHH
Q psy3835 580 ECNDLRERFGEFTAA 594 (1659)
Q Consensus 580 E~e~l~er~~e~~~~ 594 (1659)
.++..++++++....
T Consensus 167 ~fer~e~kiee~ea~ 181 (225)
T COG1842 167 AFERMEEKIEEREAR 181 (225)
T ss_pred HHHHHHHHHHHHHHH
No 458
>KOG3875|consensus
Probab=90.08 E-value=0.095 Score=59.36 Aligned_cols=58 Identities=22% Similarity=0.295 Sum_probs=0.0
Q ss_pred CcceeeeccccCCCCCccccccccCCcEEEEecCCCCCCCC--cEEEEEeccCCCcccccCcCChh
Q psy3835 1331 DSFYMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPG--HWRAWLVDADGFRQQCGIIPSKY 1394 (1659)
Q Consensus 1331 ~~~yvra~f~y~~~~~~~~~L~f~~gdil~v~~t~~~~~~~--~W~a~~v~~~~~~~~~GlIPs~~ 1394 (1659)
+..+-||.||+.+.+.. +|+|++||+|+|...-.+-... ||+-...|... .|+||..+
T Consensus 267 p~~~arA~YdF~a~np~--ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~----tG~iP~NY 326 (362)
T KOG3875|consen 267 PHEFARALYDFVARNPV--ELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGT----TGLIPINY 326 (362)
T ss_pred hHHHHHHHhhhhcCCHH--HhhhhcCchhhcccccccCCCCCcceeeeeccCCe----eeeeehhh
No 459
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=89.91 E-value=43 Score=38.64 Aligned_cols=185 Identities=14% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy3835 422 RIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRL- 500 (1659)
Q Consensus 422 ~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleel- 500 (1659)
..-.++..+-+++..++.+ +.+++..|...+..-..++-.+......+..+.+.+-..=..+...+...-..+.++
T Consensus 19 ~~~~el~~f~kERA~IE~~---YaK~L~kLskk~~~g~~E~GTl~~sw~~~~~E~e~~a~~H~~la~~L~~~~~~~~~f~ 95 (240)
T cd07672 19 KNCKEFEDFLKERASIEEK---YGKELLNLSKKKPCGQTEINTLKRSLDVFKQQIDNVGQSHIQLAQTLRDEAKKMEDFR 95 (240)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhHHhHHHHHHHHHHHHHHHHHHhh
Q psy3835 501 ---TEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMEN-----KELVEDKKTLSYQIETLKREIASALH 572 (1659)
Q Consensus 501 ---kee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~le~el-----~~l~~e~~~l~~ele~Lk~ei~~l~~ 572 (1659)
++++..+......+........+.+......++..=.+.+.+.... .....+++.++..++..+.++.....
T Consensus 96 ~~qk~~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~~~~~~~~ke~~K~~~Kl~K~~~~~~k~~~ 175 (240)
T cd07672 96 ERQKLARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNRNANLVNVKQQEKLFAKLAQSKQNAEDADR 175 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 573 DRDKALKECNDLRERFGEFTAAKEECQREAFHARFEY 609 (1659)
Q Consensus 573 ~~~~aieE~e~l~er~~e~~~~~~e~q~e~~~~~~~~ 609 (1659)
....++..++..+.++++--......-+++...|-..
T Consensus 176 ~Y~~~v~~l~~~~~~w~~~~~~~c~~fq~lEeeRi~f 212 (240)
T cd07672 176 LYMQNISVLDKIREDWQKEHVKACEFFEKQECERINF 212 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 460
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.75 E-value=5.9 Score=35.01 Aligned_cols=73 Identities=10% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 462 RNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQ 534 (1659)
Q Consensus 462 l~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~e 534 (1659)
++.++.+++..-..|.-++-++++++++...+..+...++..++.+..+..+++.+....+..+..|--++.+
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkme~ 78 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKMEE 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
No 461
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=89.47 E-value=1.1 Score=49.38 Aligned_cols=164 Identities=15% Similarity=0.048 Sum_probs=0.0
Q ss_pred EEEECCCh---HHHHHHHhhhCCCcccccccceecCChHHHHHhccCCceEEEEEeCCeee------eecHHHHHHHHHc
Q psy3835 1477 VILVGALS---DTVTDKLLQDFPDKFVRCAPEIMHCPQAAMEKGLADNLFVDYRKKGAYFE------CTSVAAVKDACDK 1547 (1659)
Q Consensus 1477 vVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttrvs~~~f~~~i~~~~flE~~~~~g~~Y------Gts~~~V~~v~~~ 1547 (1659)
|+|+||+| +|+.++|.+.+ ++....+..+=+.++...-..+..+..---.|.++ -.-...+...+..
T Consensus 6 i~i~G~~GsGKsTl~~~l~~~~----g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (188)
T TIGR01360 6 IFIVGGPGSGKGTQCEKIVEKY----GFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGT 81 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHh----CCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCc
Q ss_pred CCCeEEEEcChhHH---HHHHhcCCccEEEEEecCCHHHHHHHHhhhcccc--CCCCcccHHHHHHHHHHHHHHHHHcCC
Q psy3835 1548 NNAHVILDVSLAGV---ERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRY--SSLDKVTAKAAKEMYEHGLKIECEHKH 1622 (1659)
Q Consensus 1548 ~gk~~iLdi~~~~~---~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~--~~~~~~~~~~~~~~~~~a~~~e~~~~~ 1622 (1659)
|+.+|+|--|..+ ..+......|-+++..-.+.+.+.+|+. .|- ..+...+.+.+.+++....+.-.....
T Consensus 82 -~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~---~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~ 157 (188)
T TIGR01360 82 -SKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLL---KRAETSGRVDDNEKTIKKRLETYYKATEPVIA 157 (188)
T ss_pred -CCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHH---cccccCCCCCCCHHHHHHHHHHHHHhhHHHHH
Q ss_pred cc----eEEEeCC-CCHHHHHHHHHHHHHhh
Q psy3835 1623 YI----SAVIPAG-VNIAYMCTQIQTAVELE 1648 (1659)
Q Consensus 1623 ~f----d~vi~n~-~~~~~~~~~l~~ii~~~ 1648 (1659)
+| +++++|. .+.+..+.++...|..+
T Consensus 158 ~y~~~~~~~~id~~~~~~~v~~~i~~~l~~~ 188 (188)
T TIGR01360 158 YYETKGKLRKINAEGTVDDVFLQVCTAIDKL 188 (188)
T ss_pred HHHhCCCEEEEECCCCHHHHHHHHHHHHhcC
No 462
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=89.39 E-value=44 Score=39.92 Aligned_cols=214 Identities=11% Similarity=0.128 Sum_probs=0.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 366 DDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLK 445 (1659)
Q Consensus 366 ~~~~~~~~l~~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~ 445 (1659)
++.....-++.-+..+.+.|..+++.-......+..|+.+...+.+.++.-.++-.++..-...++.........+++.+
T Consensus 108 Di~~~l~gvnSGLvrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaE 187 (558)
T PF15358_consen 108 DITELLEGVNSGLVRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAE 187 (558)
T ss_pred cHHHHHhhhcccceecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH----------------------------------------
Q psy3835 446 QQCTAAIRQWDIALRERNEYQEALAK-----VQQQHEDAV---------------------------------------- 480 (1659)
Q Consensus 446 ~el~~l~~~~~~l~~el~~l~~~l~e-----l~~eieele---------------------------------------- 480 (1659)
-+-..+++.-+-+++++.-+..++++ ...+..+++
T Consensus 188 iKtnvLkqnS~~LEekLr~lq~qLqdE~prrqe~e~qELeqkleagls~~~l~p~~~~~g~~~p~~s~~~p~~~~~l~~~ 267 (558)
T PF15358_consen 188 IKTNVLKQNSALLEEKLRYLQQQLQDETPRRQEAEWQELEQKLEAGLSRSGLPPTADSTGCPGPPGSPEEPPRPRNLAPA 267 (558)
T ss_pred HHhcccccchHHHHHHHHHHHHHhcccCcchhhhhHHHHHHHHhhhhhhcCCCccccCCCCCCCCCCCCCCCCccccccc
Q ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 481 -----------------------KEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVR 537 (1659)
Q Consensus 481 -----------------------~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ 537 (1659)
.-+++++.....+.....+-+-..+++..-+-.+--.++.+.-+.++.+.+..+...
T Consensus 268 ~~~~~~rage~~~~seq~lqk~~s~LEelRrevssLtarw~qEega~qEaLrlLgglggRldgflgqWERaQ~eq~q~ar 347 (558)
T PF15358_consen 268 GWGGGPRAGEGPELSEQELQKVSSGLEELRREVSSLTARWHQEEGAVQEALRLLGGLGGRLDGFLGQWERAQREQAQTAR 347 (558)
T ss_pred ccccCCCCCCCccccHHhhcccCccHHHHHHHHHHHhhHHHHHHhHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy3835 538 KIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALK 579 (1659)
Q Consensus 538 ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aie 579 (1659)
-+..|+.+.+++-.-.+...--+..|+.+++.+++++.-+++
T Consensus 348 ~lqeLR~~~delct~versavs~asLrseLeglgpvKPilEe 389 (558)
T PF15358_consen 348 GLQELRGRADELCTMVERSAVSVASLRSELEGLGPVKPILEE 389 (558)
T ss_pred HHHHHHHhHHHHHHHHHHhHhHHHHHHHHhhcccCcchHHHH
No 463
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=89.36 E-value=48 Score=38.45 Aligned_cols=234 Identities=12% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHH
Q psy3835 335 RSKYSDLISDKQRLDRELLELRSGCCTQPESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRF-DDLINTHSTAVDKL 413 (1659)
Q Consensus 335 ~~e~~el~~e~~~Le~el~~lk~~~~~~e~~~~~~~~~~l~~~~~~le~~le~l~~e~~~l~~~~-~el~~~l~~~~~~l 413 (1659)
..++..+...+..+...++.-. .......+..+..+++.+..|.+.+ .+.+......+.-.
T Consensus 4 ~~KL~~i~e~~~~f~~~le~e~------------------~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq 65 (247)
T PF06705_consen 4 KSKLASINERFSGFESDLENEK------------------RQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQ 65 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy3835 414 ELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAK-VQQQHEDAVKEINTAMAVRMK 492 (1659)
Q Consensus 414 e~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~e-l~~eieele~el~~l~~~l~~ 492 (1659)
..++..+..+...+.. ........+...+..+..++..+...+.+....... .......+..++..+...+..
T Consensus 66 ~~~e~~i~~~~~~v~~------~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~ 139 (247)
T PF06705_consen 66 SKFEEQINNMQERVEN------QISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFEN 139 (247)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHH-HHHHHHHHHHHHHHHh
Q psy3835 493 ATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKT-LSYQIETLKREIASAL 571 (1659)
Q Consensus 493 ~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~le~el~~l~~e~~~-l~~ele~Lk~ei~~l~ 571 (1659)
......+....+-....+.. ..-...+..+...-...+..+...++.+..........+.. +..++..++..|....
T Consensus 140 Er~~R~erE~~i~krl~e~~--~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~ 217 (247)
T PF06705_consen 140 ERNEREEREENILKRLEEEE--NRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALES 217 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy3835 572 HDRDKALKECNDLRERFGEFTAA 594 (1659)
Q Consensus 572 ~~~~~aieE~e~l~er~~e~~~~ 594 (1659)
..+..+-.++=..-.+|-....+
T Consensus 218 ~~R~~~Dd~Iv~aln~yt~~lQ~ 240 (247)
T PF06705_consen 218 QEREQSDDDIVQALNHYTKALQD 240 (247)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHH
No 464
>PF14992 TMCO5: TMCO5 family
Probab=89.33 E-value=14 Score=42.77 Aligned_cols=175 Identities=10% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 443 GLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVH 522 (1659)
Q Consensus 443 ~L~~el~~l~~~~~~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~ 522 (1659)
.+..+...+......+-..+.+.+..+..+..++.........- ++...-..+.+..+.++..+...++.+-..+.
T Consensus 8 dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~----e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~ 83 (280)
T PF14992_consen 8 DLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRS----EEEDIISEERETDLQELELETAKLEKENEHLS 83 (280)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCch----hHHhhhhhchHHHHHHHHhhhHHHhhhhHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 523 KEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAAKEECQREA 602 (1659)
Q Consensus 523 ~el~~L~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~~~~e~q~e~ 602 (1659)
+.+..++.++.+-... ..-+...+.......+..++.+.........+.....++|..+..-.+..+....+.++.+
T Consensus 84 ~~~~elq~k~~e~~~~---~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L 160 (280)
T PF14992_consen 84 KSVQELQRKQDEQETN---VQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKL 160 (280)
T ss_pred hhhhhhhhhhccccCC---CCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhcccchhhHhhhhHHHHHhhhhHhhhhhhhhh
Q psy3835 603 FHARFEYAMRMGERDSSRKERNEVEAASMDLFGKCQKERMD 643 (1659)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 643 (1659)
++++...+ +..|+.++.++++.
T Consensus 161 ~rmE~ekE-------------------~~lLe~el~k~q~~ 182 (280)
T PF14992_consen 161 RRMEEEKE-------------------MLLLEKELSKYQMQ 182 (280)
T ss_pred HHHHHHHH-------------------HHHHHHHHHHHhch
No 465
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=89.30 E-value=8.2 Score=42.09 Aligned_cols=142 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCcEEEECCCh---HHHHHHHhhhCCCcccccccceecCChHHHHHhccCCceEEEEEeCCeeeeecHHHHHHH------
Q psy3835 1474 LRPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMHCPQAAMEKGLADNLFVDYRKKGAYFECTSVAAVKDA------ 1544 (1659)
Q Consensus 1474 ~RpvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttrvs~~~f~~~i~~~~flE~~~~~g~~YGts~~~V~~v------ 1544 (1659)
.+.|+|+||+| +||.+.|.....- .|+.-...--..+|.+...+.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~------------------------~~vd~D~~i~~~~g~~i~~~~~~~g~~~f 59 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM------------------------EFYDSDQEIEKRTGADIGWVFDVEGEEGF 59 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCC------------------------cEEECCchHHHHhCcCHhHHHHHhCHHHH
Q ss_pred ----------HHcCCCeEEEEcChhHH------HHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHH
Q psy3835 1545 ----------CDKNNAHVILDVSLAGV------ERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKE 1608 (1659)
Q Consensus 1545 ----------~~~~gk~~iLdi~~~~~------~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~ 1608 (1659)
+.. ...+++......+ ..|+... ++||+.. +.+.+-+|..-...|....+....+.+..
T Consensus 60 r~~e~~~l~~l~~-~~~~vi~~ggg~v~~~~~~~~l~~~~---~vv~L~~-~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~ 134 (172)
T PRK05057 60 RDREEKVINELTE-KQGIVLATGGGSVKSRETRNRLSARG---VVVYLET-TIEKQLARTQRDKKRPLLQVDDPREVLEA 134 (172)
T ss_pred HHHHHHHHHHHHh-CCCEEEEcCCchhCCHHHHHHHHhCC---EEEEEeC-CHHHHHHHHhCCCCCCCCCCCCHHHHHHH
Q ss_pred HHHHHHHHHHHcCCcceEEEeCC-CCHHHHHHHHHHHHHh
Q psy3835 1609 MYEHGLKIECEHKHYISAVIPAG-VNIAYMCTQIQTAVEL 1647 (1659)
Q Consensus 1609 ~~~~a~~~e~~~~~~fd~vi~n~-~~~~~~~~~l~~ii~~ 1647 (1659)
+++.- +..|..+.|++|.++ .+.++.+.+|...+.+
T Consensus 135 l~~~R---~~~Y~~~Ad~~idt~~~s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 135 LANER---NPLYEEIADVTIRTDDQSAKVVANQIIHMLES 171 (172)
T ss_pred HHHHH---HHHHHhhCCEEEECCCCCHHHHHHHHHHHHhh
No 466
>PRK04182 cytidylate kinase; Provisional
Probab=89.26 E-value=5.3 Score=43.52 Aligned_cols=152 Identities=16% Similarity=0.094 Sum_probs=0.0
Q ss_pred EEEECCCh---HHHHHHHhhhCCCccccc---ccceec---CChHHHHHhccCCceEEEEEeCCeeeeecHHHHHHHHH-
Q psy3835 1477 VILVGALS---DTVTDKLLQDFPDKFVRC---APEIMH---CPQAAMEKGLADNLFVDYRKKGAYFECTSVAAVKDACD- 1546 (1659)
Q Consensus 1477 vVl~Gp~g---~~l~~~Ll~~~p~~f~~~---v~~Ttr---vs~~~f~~~i~~~~flE~~~~~g~~YGts~~~V~~v~~- 1546 (1659)
|+|+|++| +|+.+.|.+...-.|..+ +-...+ .+..+|...-..... +..........+.
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 72 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKYAEEDPE----------IDKEIDRRQLEIAE 72 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHHhhcCch----------HHHHHHHHHHHHHh
Q ss_pred cCCCeEEEEcChhHHHHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHHcC-----
Q psy3835 1547 KNNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLKIECEHK----- 1621 (1659)
Q Consensus 1547 ~~gk~~iLdi~~~~~~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~~~e~~~~----- 1621 (1659)
. +..||++-...+. ......-++|||.+ +.+.+.+|+. .+...+..++.+.+.........+-
T Consensus 73 ~-~~~~Vi~g~~~~~---~~~~~~~~~V~l~a-~~e~~~~Rl~-------~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~ 140 (180)
T PRK04182 73 K-EDNVVLEGRLAGW---MAKDYADLKIWLKA-PLEVRAERIA-------EREGISVEEALEETIEREESEAKRYKEYYG 140 (180)
T ss_pred c-CCCEEEEEeecce---EecCCCCEEEEEEC-CHHHHHHHHH-------hccCCCHHHHHHHHHHHHHHHHHHHHHHhC
Q ss_pred ------CcceEEEeCC-CCHHHHHHHHHHHHHhhcC
Q psy3835 1622 ------HYISAVIPAG-VNIAYMCTQIQTAVELEQS 1650 (1659)
Q Consensus 1622 ------~~fd~vi~n~-~~~~~~~~~l~~ii~~~~~ 1650 (1659)
+.||.+|.++ .+++.++..|.+++.....
T Consensus 141 ~~~~~~~~~d~~idt~~~~~~~~~~~I~~~~~~~~~ 176 (180)
T PRK04182 141 IDIDDLSIYDLVINTSRWDPEGVFDIILTAIDKLLK 176 (180)
T ss_pred CCccccccccEEEECCCCCHHHHHHHHHHHHHHHhc
No 467
>KOG1962|consensus
Probab=89.24 E-value=5.9 Score=44.03 Aligned_cols=99 Identities=16% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 430 MNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQ 509 (1659)
Q Consensus 430 l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~ 509 (1659)
+....-.+..++-.++.. +.+.++...+.+..+...+ +.++.+.+..++..+++++.+...+++..+++..++..
T Consensus 112 vI~R~~~ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~K 186 (216)
T KOG1962|consen 112 VIRRLHTLLRELATLRAN-EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKK 186 (216)
T ss_pred HHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 510 EYSLIMSERDSVHKEMEKLSEDLT 533 (1659)
Q Consensus 510 el~~l~~e~~~l~~el~~L~~el~ 533 (1659)
+.+.++.+.+++.++.+.|++++.
T Consensus 187 q~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 187 QSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHh
No 468
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.23 E-value=6.8 Score=34.64 Aligned_cols=73 Identities=12% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 455 WDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEK 527 (1659)
Q Consensus 455 ~~~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~ 527 (1659)
++.++.++..+-..+.-++-++++++++-..+..+...++...+.++.+-+.++++....++.+..+.-.++.
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkme~ 78 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKMEE 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
No 469
>KOG2751|consensus
Probab=89.17 E-value=11 Score=45.73 Aligned_cols=124 Identities=20% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 420 VARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKR 499 (1659)
Q Consensus 420 l~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~elee 499 (1659)
+..+..+.+.++.+.+..+.=++.|+++-... ..+++..+++++..+-+.+-+++++++++-..+...+.+++.+-++
T Consensus 145 ~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~--~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~ 222 (447)
T KOG2751|consen 145 LNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV--SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAER 222 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 500 LTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEME 545 (1659)
Q Consensus 500 lkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~le~e 545 (1659)
+.++......++.......-..+.++..+..++.-...++..+...
T Consensus 223 ~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~kt 268 (447)
T KOG2751|consen 223 LNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKT 268 (447)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhh
No 470
>KOG4225|consensus
Probab=89.10 E-value=0.34 Score=57.64 Aligned_cols=54 Identities=24% Similarity=0.367 Sum_probs=0.0
Q ss_pred CCCcceeeeccccCCCCCccccccccCCcEEEEecCCCCCCCCcEEEEEeccCCCcccccCcC
Q psy3835 1329 PGDSFYMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIP 1391 (1659)
Q Consensus 1329 ~~~~~yvra~f~y~~~~~~~~~L~f~~gdil~v~~t~~~~~~~~W~a~~v~~~~~~~~~GlIP 1391 (1659)
+...|-+||+|.|.|...+ +|.|.-|||++|+. +.|+||. |+..-+++..|+.|
T Consensus 429 ~~~~l~yrAly~Y~pqned--eLEl~egDii~Vme---KcddgWf----vGts~rtg~fGtFP 482 (489)
T KOG4225|consen 429 SSEPLKYRALYSYRPQNED--ELELREGDIIDVME---KCDDGWF----VGTSRRTGKFGTFP 482 (489)
T ss_pred CCCcccceeccccCCCCch--hheeccCCEEeeee---cccCcce----eccceecccccccC
No 471
>KOG3091|consensus
Probab=88.91 E-value=18 Score=44.70 Aligned_cols=168 Identities=9% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 421 ARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRL 500 (1659)
Q Consensus 421 ~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleel 500 (1659)
.+|+.++..-.++.......++.+.+++.+|++...+...+|++++.++.+|..+|-.+--.++-++..=-.+..+=++|
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~L 416 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEEL 416 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy3835 501 TEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKE 580 (1659)
Q Consensus 501 kee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE 580 (1659)
+.+++.+..+++.= .++...+..|.+.+.... .-..+............+.++.+..-.+.|..+..+.....+.
T Consensus 417 r~Kldtll~~ln~P----nq~k~Rl~~L~e~~r~q~-~~~~~~~~~~iD~~~~~e~~e~lt~~~e~l~~Lv~Ilk~d~ed 491 (508)
T KOG3091|consen 417 RAKLDTLLAQLNAP----NQLKARLDELYEILRMQN-SQLKLQESYWIDFDKLIEMKEHLTQEQEALTKLVNILKGDQED 491 (508)
T ss_pred HHHHHHHHHHhcCh----HHHHHHHHHHHHHHHhhc-chhccccceeechhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q ss_pred H-HHHHHHHHHHHH
Q psy3835 581 C-NDLRERFGEFTA 593 (1659)
Q Consensus 581 ~-e~l~er~~e~~~ 593 (1659)
+ ..+.+-......
T Consensus 492 i~~~l~E~~~~~~~ 505 (508)
T KOG3091|consen 492 IKHQLIEDLEICRK 505 (508)
T ss_pred HHHHHHhhHHHHhh
No 472
>KOG1103|consensus
Probab=88.83 E-value=53 Score=38.25 Aligned_cols=265 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCCCCCcccccchHHHHHHHHHHHHHHHHHHH------H
Q psy3835 319 AAMAQLEAAAQESSSLRSKYSDLI-SDKQRLDRELLELRSGCCTQPESDDAGSADSLNQHYMSALNKYETIKD------E 391 (1659)
Q Consensus 319 el~~~l~~lk~e~~~l~~e~~el~-~e~~~Le~el~~lk~~~~~~e~~~~~~~~~~l~~~~~~le~~le~l~~------e 391 (1659)
++..-+.-++.+++.-..-+..|+ .+...+-.+-.--+ ..++.-+..++....-+-+++...+. .
T Consensus 16 ELl~LfS~lEGEleARd~VIdaLKraqhkd~fiE~kYGK--------~NinDP~~ALqRDf~~l~Ek~D~EK~p~ct~sp 87 (561)
T KOG1103|consen 16 ELLKLFSFLEGELEARDDVIDALKRAQHKDLFIEAKYGK--------LNINDPFAALQRDFAILGEKIDEEKIPQCTESP 87 (561)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc--------cccCChHHHHHHHHHHHhccccccccceeccCh
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 392 YDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRE----RNGLKQQCTAAIRQWDIALRERNEYQE 467 (1659)
Q Consensus 392 ~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~e----i~~L~~el~~l~~~~~~l~~el~~l~~ 467 (1659)
++.|.+-+..+.+..+.....+-.++....++-..++.-.+.......+ ...|+++.+.|+++++....+.+.++.
T Consensus 88 l~iL~~mM~qcKnmQe~~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~ 167 (561)
T KOG1103|consen 88 LDILDKMMAQCKNMQENAASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEI 167 (561)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3835 468 ALAKVQQQHEDAVKEINTAMAVR-MKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMEN 546 (1659)
Q Consensus 468 ~l~el~~eieele~el~~l~~~l-~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~le~el 546 (1659)
..+.+...+++-++.-+.+..-+ .++++.+.+.-++...+.+-.-+++.+..+...--+.+..+...--..-...+..+
T Consensus 168 ~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~i 247 (561)
T KOG1103|consen 168 AKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLI 247 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHHH
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy3835 547 KELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGEF 591 (1659)
Q Consensus 547 ~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~ 591 (1659)
.++..+.+.+..+++...+.-+-+..++..+.+-...+...+..+
T Consensus 248 ~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~ 292 (561)
T KOG1103|consen 248 EEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHL 292 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
No 473
>PRK00131 aroK shikimate kinase; Reviewed
Probab=88.83 E-value=7.7 Score=41.91 Aligned_cols=145 Identities=12% Similarity=0.073 Sum_probs=0.0
Q ss_pred CCCCcEEEECCCh---HHHHHHHhhhCCCcccccccceecCChHHHHHhccCCceEEEEEeCCeeeeecH----------
Q psy3835 1472 PVLRPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMHCPQAAMEKGLADNLFVDYRKKGAYFECTSV---------- 1538 (1659)
Q Consensus 1472 ~~~RpvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttrvs~~~f~~~i~~~~flE~~~~~g~~YGts~---------- 1538 (1659)
+.+..|+|+||+| +|+.+.|-+...- .|+....+....+|.+.
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~------------------------~~~d~d~~~~~~~g~~~~~~~~~~g~~ 57 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGY------------------------DFIDTDHLIEARAGKSIPEIFEEEGEA 57 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCC------------------------CEEEChHHHHHHcCCCHHHHHHHHCHH
Q ss_pred -------HHHHHHHHcCCCeEEE-----EcChhHHHHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHH
Q psy3835 1539 -------AAVKDACDKNNAHVIL-----DVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAA 1606 (1659)
Q Consensus 1539 -------~~V~~v~~~~gk~~iL-----di~~~~~~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~ 1606 (1659)
..+..++.. ...+|. .++......|+ ...++|||.. +.+.+.+|+..+..|-........+.+
T Consensus 58 ~~~~~~~~~~~~l~~~-~~~vi~~g~~~~~~~~~r~~l~---~~~~~v~l~~-~~~~~~~R~~~~~~r~~~~~~~~~~~~ 132 (175)
T PRK00131 58 AFRELEEEVLAELLAR-HNLVISTGGGAVLREENRALLR---ERGTVVYLDA-SFEELLRRLRRDRNRPLLQTNDPKEKL 132 (175)
T ss_pred HHHHHHHHHHHHHHhc-CCCEEEeCCCEeecHHHHHHHH---hCCEEEEEEC-CHHHHHHHhcCCCCCCcCCCCChHHHH
Q ss_pred HHHHHHHHHHHHHcCCcceEEEeCC-CCHHHHHHHHHHHHHhh
Q psy3835 1607 KEMYEHGLKIECEHKHYISAVIPAG-VNIAYMCTQIQTAVELE 1648 (1659)
Q Consensus 1607 ~~~~~~a~~~e~~~~~~fd~vi~n~-~~~~~~~~~l~~ii~~~ 1648 (1659)
..++... ...|..+||.+|..+ .+++++.+.|.+.|...
T Consensus 133 ~~~~~~~---~~~~~~~~dl~idt~~~~~~e~~~~I~~~v~~~ 172 (175)
T PRK00131 133 RDLYEER---DPLYEEVADITVETDGRSPEEVVNEILEKLEAA 172 (175)
T ss_pred HHHHHHH---HHHHHhhcCeEEeCCCCCHHHHHHHHHHHHHhh
No 474
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=88.82 E-value=7.6 Score=35.62 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 376 QHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNG 443 (1659)
Q Consensus 376 ~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~ 443 (1659)
+.++.++.++..+-+.+..|+.++++++.+-..+.+....+..+...++.+...+...+..+-..++.
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 475
>KOG2751|consensus
Probab=88.80 E-value=15 Score=44.57 Aligned_cols=130 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 386 ETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEY 465 (1659)
Q Consensus 386 e~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l 465 (1659)
+-...-.+.+.++++..+.+....+.-++.++++.... +...+..+.+.+..+-.+|-++++.++++-+++...+.+.
T Consensus 139 eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~--~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~ 216 (447)
T KOG2751|consen 139 ECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV--SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKEL 216 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 466 QEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSE 517 (1659)
Q Consensus 466 ~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e 517 (1659)
+.+-.++.++...+.+++....-+.-..+.++..++.++.-...+++.+...
T Consensus 217 ~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~kt 268 (447)
T KOG2751|consen 217 EFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKT 268 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhh
No 476
>KOG2685|consensus
Probab=88.54 E-value=67 Score=39.08 Aligned_cols=279 Identities=13% Similarity=0.026 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccCCCCCc
Q psy3835 290 PLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRS----GCCTQPES 365 (1659)
Q Consensus 290 e~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk~----~~~~~e~~ 365 (1659)
+.-..-...-..-.+.+...++.+..--.++..+++.+..++..+...+..++..+..+..-+.-..+ +....-..
T Consensus 59 e~~~~t~~~q~dtt~~L~~R~~di~~Wk~el~~ele~l~~E~~~L~~~k~rle~~L~~~~~P~~ia~eCL~~RekR~~~d 138 (421)
T KOG2685|consen 59 ETNALTDKMQRDTTEKLGQRLDDVNFWKGELDRELEDLAAEIDDLLHEKRRLERALNALALPLSIAEECLAHREKRQGID 138 (421)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhcccch
Q ss_pred ccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH------------------------
Q psy3835 366 DDAGSA-DSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEV------------------------ 420 (1659)
Q Consensus 366 ~~~~~~-~~l~~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel------------------------ 420 (1659)
-..... .++..+.+-+..-.+.+++..+....++....+-...+...++...+.+
T Consensus 139 lv~D~Ve~EL~kE~eli~~~q~ll~~~~~~a~~Ql~~nr~ar~~Le~Dl~dK~eA~~ID~~c~~L~~~S~~I~~~p~~~R 218 (421)
T KOG2685|consen 139 LVHDEVETELHKEVELIENIQELLKKTLERAEEQLRLNREARQNLERDLSDKQEAYEIDEKCLALNNNSPNISYKPDPTR 218 (421)
T ss_pred hhccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhheechhhhhhcCCCCCeeccCCCcc
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 421 -----ARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAK-VQQQHEDAVKEINTAMAVRMKAT 494 (1659)
Q Consensus 421 -----~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~e-l~~eieele~el~~l~~~l~~~~ 494 (1659)
...+.-..-....+...+.++..--.--..+..-+.....++.......+- +...+.+.+.-..++...+.+..
T Consensus 219 ~~~~~~s~e~W~~fs~~nl~~ae~er~~S~~LR~~l~~~l~~tan~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~l 298 (421)
T KOG2685|consen 219 VPPNSSSPESWAKFSGDNLDRAERERAASAALREALDQTLRETANDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTL 298 (421)
T ss_pred CCCCCCCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHhhhhHHhHHHHH
Q psy3835 495 KDLKRLTEERNAAMQEYSLIMSERDSVHKEMEK-----------------LSEDLTQAVRKIKTLEMENKELVEDKKTLS 557 (1659)
Q Consensus 495 ~eleelkee~~~~~~el~~l~~e~~~l~~el~~-----------------L~~el~ele~ki~~le~el~~l~~e~~~l~ 557 (1659)
+++.+.+..+..++..+.....-+.-.+..+.. |-.++.++...+..|+.++.+.+..++.|.
T Consensus 299 eEi~~~e~~I~~le~airdK~~pLKVAqTRle~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~ 378 (421)
T KOG2685|consen 299 EEIADAENNIEALERAIRDKEGPLKVAQTRLENRTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLV 378 (421)
T ss_pred HHHHHHHhHHHHHHHHHhcccccHHHHHHHHHHcccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q psy3835 558 YQIETLKREIA 568 (1659)
Q Consensus 558 ~ele~Lk~ei~ 568 (1659)
.....|+.+|.
T Consensus 379 ~~~~rLe~di~ 389 (421)
T KOG2685|consen 379 NHRARLERDIA 389 (421)
T ss_pred HHHHHHHHHHH
No 477
>PRK01184 hypothetical protein; Provisional
Probab=88.54 E-value=4.6 Score=44.38 Aligned_cols=157 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred CCcEEEECCCh---HHHHHHHhhhCCCcccccccceecCChHHHHHhccCCceEEEEEeCCe-------eee------ec
Q psy3835 1474 LRPVILVGALS---DTVTDKLLQDFPDKFVRCAPEIMHCPQAAMEKGLADNLFVDYRKKGAY-------FEC------TS 1537 (1659)
Q Consensus 1474 ~RpvVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttrvs~~~f~~~i~~~~flE~~~~~g~-------~YG------ts 1537 (1659)
...|+|+||+| +|+.+ +++.+.-.+.. +-+.+.+.+....+-......|. .|| ..
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~--------~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 71 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREMGIPVVV--------MGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRT 71 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHcCCcEEE--------hhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHH
Q ss_pred HHHHHHHHHcCCCeEEEEc--ChhHHHHHHhcCC-ccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHH
Q psy3835 1538 VAAVKDACDKNNAHVILDV--SLAGVERLHRQHV-YPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGL 1614 (1659)
Q Consensus 1538 ~~~V~~v~~~~gk~~iLdi--~~~~~~~l~~~~~-~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~ 1614 (1659)
...|.. .. |..+|+|. .+.-+..++.... ..++|||..|....++++.. |-...+..+.+++.++.+...
T Consensus 72 ~~~i~~--~~-~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~----R~~~~d~~~~~~~~~r~~~q~ 144 (184)
T PRK01184 72 VPKIRE--KG-DEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKK----RGRSDDPKSWEELEERDEREL 144 (184)
T ss_pred HHHHHh--cC-CCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHH----cCCCCChhhHHHHHHHHHHHh
Q ss_pred H--HHHHcCCcceEEEeCCCCHHHHHHHHHHHHHh
Q psy3835 1615 K--IECEHKHYISAVIPAGVNIAYMCTQIQTAVEL 1647 (1659)
Q Consensus 1615 ~--~e~~~~~~fd~vi~n~~~~~~~~~~l~~ii~~ 1647 (1659)
. ++..+ ..-|++|.|+++++.++.+++.++..
T Consensus 145 ~~~~~~~~-~~ad~vI~N~~~~~~l~~~v~~~~~~ 178 (184)
T PRK01184 145 SWGIGEVI-ALADYMIVNDSTLEEFRARVRKLLER 178 (184)
T ss_pred ccCHHHHH-HhcCEEEeCCCCHHHHHHHHHHHHHH
No 478
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=88.31 E-value=56 Score=37.90 Aligned_cols=232 Identities=15% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-H
Q psy3835 410 VDKLELAQEEVARIKKQC-EDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAK-VQQQHEDAVKEINT-A 486 (1659)
Q Consensus 410 ~~~le~leeel~~lk~e~-~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~e-l~~eieele~el~~-l 486 (1659)
+.++..+.+.+..+...+ .+...+...-...+..+...+..++..+....+...+....+.. +...+..+...+.. +
T Consensus 4 ~~KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~ 83 (247)
T PF06705_consen 4 KSKLASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQI 83 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhH-HHHHHHHHHHH
Q psy3835 487 MAVRMKATKDLKRLTEERNAAMQEYSLIMSERDS-VHKEMEKLSEDLTQAVRKIKTLEMENKELVEDK-KTLSYQIETLK 564 (1659)
Q Consensus 487 ~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~-l~~el~~L~~el~ele~ki~~le~el~~l~~e~-~~l~~ele~Lk 564 (1659)
......+...++.+...+..+...+.....++.. +......+..++.++...++.-.....+....+ +.+......+.
T Consensus 84 ~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~ 163 (247)
T PF06705_consen 84 SEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQ 163 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhhHHHHHhhhhHhhhhhhhhhh
Q psy3835 565 REIASALHDRDKALKECNDLRERFGEFTAAKEECQREAFHARFEYAMRMGERDSSRKERNEVEAASMDLFGKCQKERMDN 644 (1659)
Q Consensus 565 ~ei~~l~~~~~~aieE~e~l~er~~e~~~~~~e~q~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 644 (1659)
..+..-...+.....++...-+.+........+.=+- -...++..++..+....++|..+..++
T Consensus 164 ~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~----------------~v~~Ei~~lk~~l~~e~~~R~~~Dd~I 227 (247)
T PF06705_consen 164 EKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQN----------------FVLEEIAALKNALALESQEREQSDDDI 227 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH----------------HHHHHHHHHHHHHHHHHHHHHhhhhHH
Q ss_pred HHHHHHHHHHHHH
Q psy3835 645 LEANQEIDRLRKH 657 (1659)
Q Consensus 645 ~~~~~Ele~lr~~ 657 (1659)
..+...+-..-+.
T Consensus 228 v~aln~yt~~lQ~ 240 (247)
T PF06705_consen 228 VQALNHYTKALQD 240 (247)
T ss_pred HHHHHHHHHHHHH
No 479
>KOG0163|consensus
Probab=88.29 E-value=23 Score=45.25 Aligned_cols=178 Identities=12% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HH
Q psy3835 520 SVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAAKE-EC 598 (1659)
Q Consensus 520 ~l~~el~~L~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~~~~-e~ 598 (1659)
........|.....+...-+..+..-..+.......+..+++.|-..|+.-.--..++..+|..+..-|+++..+.. ..
T Consensus 837 ~~~~K~~~l~kns~k~~ei~s~lke~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~ 916 (1259)
T KOG0163|consen 837 AGIRKINALLKNSLKTIEILSRLKEGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKE 916 (1259)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhH
Q ss_pred HHHHHHHHHHHHhhcccchhhHhhhhHHHHHhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy3835 599 QREAFHARFEYAMRMGERDSSRKERNEVEAASMDLFGKCQKERMDNLEANQEIDRLRKHTDKLQAELQDQSVNYLFILTE 678 (1659)
Q Consensus 599 q~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Ele~lr~~l~~l~~el~~~~~~~~~~l~e 678 (1659)
++++..++...+-.+.+-.|+.+...+-++...+-.+.+.+++++..+..+|-++..++-.+.+-.++.+---....-++
T Consensus 917 ~q~~~e~er~rk~qE~~E~ER~rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~eee 996 (1259)
T KOG0163|consen 917 QQQIEELERLRKIQELAEAERKRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAKEAEEE 996 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhcccccccc
Q psy3835 679 SIQEAEVSKRRRDWAFSER 697 (1659)
Q Consensus 679 ~~~e~~~~~~~~~~~~~~~ 697 (1659)
.+.+....+.|+|.+.+-|
T Consensus 997 ~k~q~~~Eqer~D~~la~R 1015 (1259)
T KOG0163|consen 997 AKRQNQLEQERRDHELALR 1015 (1259)
T ss_pred HHHHhHHHHHHHHHHHHHH
No 480
>KOG3601|consensus
Probab=88.22 E-value=0.32 Score=52.77 Aligned_cols=60 Identities=20% Similarity=0.301 Sum_probs=0.0
Q ss_pred CCCCcceeeeccccCCCCCccccccccCCcEEEEecCCCCCCCCcEEEEEeccCCCcccccCcCC
Q psy3835 1328 KPGDSFYMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPS 1392 (1659)
Q Consensus 1328 ~~~~~~yvra~f~y~~~~~~~~~L~f~~gdil~v~~t~~~~~~~~W~a~~v~~~~~~~~~GlIPs 1392 (1659)
+++...|+++.|+..|..+. +|.|++||+.+|++ +.++.||..+..+..|--..--.||+
T Consensus 159 ~~~~~~yqQa~~df~~~pp~--ql~f~~gq~~~v~~---~ss~~ww~Gs~lg~agiFpagyv~p~ 218 (222)
T KOG3601|consen 159 PAPTNYYQQALYDFQPQPPG--QLAFRRGQQIQVLD---SSSPFWWFGSKLGRAGIFPAGYVAPS 218 (222)
T ss_pred CCccchhhhhcCCCCCCCch--hhccccCCcceeec---CCCcchhhccccCceeeecCcccccc
No 481
>PRK13808 adenylate kinase; Provisional
Probab=88.19 E-value=6 Score=47.56 Aligned_cols=159 Identities=14% Similarity=0.091 Sum_probs=0.0
Q ss_pred EEEECCCh---HHHHHHHhhhCCCcccccccceec-------CChHHHHHhccCCceEEEEEeCCeeeeecHHHHHHHHH
Q psy3835 1477 VILVGALS---DTVTDKLLQDFPDKFVRCAPEIMH-------CPQAAMEKGLADNLFVDYRKKGAYFECTSVAAVKDACD 1546 (1659)
Q Consensus 1477 vVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttr-------vs~~~f~~~i~~~~flE~~~~~g~~YGts~~~V~~v~~ 1546 (1659)
|||+||+| +|+..+|...| +....++-+..| -.-..+...+.+|.++-- -+...-|.+.+.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~y-gl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPd--------eiv~~li~e~l~ 73 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQY-GIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPD--------EVVVGIISDRIE 73 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-CCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCH--------HHHHHHHHHHHh
Q ss_pred cCC---CeEEEEcChhHHHHHH-------hcCCccEEEEEecCCHHHHHHHHhhhccc--------cCCCCcccHHHHHH
Q psy3835 1547 KNN---AHVILDVSLAGVERLH-------RQHVYPIVLLIKFKSTKQIKEIKEIRDGR--------YSSLDKVTAKAAKE 1608 (1659)
Q Consensus 1547 ~~g---k~~iLdi~~~~~~~l~-------~~~~~pivIfI~pps~~~l~~~~~~~~~r--------~~~~~~~~~~~~~~ 1608 (1659)
+ . .-.|||=-|..+.+.. ...+.|-+||+.--+.+.+.+|+. .| ...|..++.+.+.+
T Consensus 74 ~-~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~---~R~~~~~~rg~~~R~DD~~E~i~k 149 (333)
T PRK13808 74 Q-PDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVE---TRVAEMRARGEEVRADDTPEVLAK 149 (333)
T ss_pred c-ccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHH---cCcccccccCCccCCCCCHHHHHH
Q ss_pred HHHHHHHHHHHcCCcce----EEEeCC-CCHHHHHHHHHHHHHhh
Q psy3835 1609 MYEHGLKIECEHKHYIS----AVIPAG-VNIAYMCTQIQTAVELE 1648 (1659)
Q Consensus 1609 ~~~~a~~~e~~~~~~fd----~vi~n~-~~~~~~~~~l~~ii~~~ 1648 (1659)
++..-.........+|. ++.+|. .++++.+.+|..+|...
T Consensus 150 RL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~ 194 (333)
T PRK13808 150 RLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAV 194 (333)
T ss_pred HHHHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHH
No 482
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=88.08 E-value=9.8 Score=34.93 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 453 RQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSV 521 (1659)
Q Consensus 453 ~~~~~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l 521 (1659)
..++.++..+..+-+.+.-++.++++++.+...+......+..+..+++.++......++.+-..++..
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~v 72 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEEV 72 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
No 483
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=88.07 E-value=1.5 Score=47.46 Aligned_cols=152 Identities=14% Similarity=0.069 Sum_probs=0.0
Q ss_pred EEEECCCh---HHHHHHHhhhCCCcccccccceecCChHHHHHh-ccCCceEEEEEeCCeeeeecHHHHHHHHHcCCCeE
Q psy3835 1477 VILVGALS---DTVTDKLLQDFPDKFVRCAPEIMHCPQAAMEKG-LADNLFVDYRKKGAYFECTSVAAVKDACDKNNAHV 1552 (1659)
Q Consensus 1477 vVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttrvs~~~f~~~-i~~~~flE~~~~~g~~YGts~~~V~~v~~~~gk~~ 1552 (1659)
|+|+|++| +|+.+.|. ..|++.+-++-.+-++..... +.-..|..+...+..+..--...+...+.. +..|
T Consensus 3 I~i~G~~GSGKstia~~la----~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 77 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILA----EKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALK-EKNV 77 (171)
T ss_pred EEEECCCCCCHHHHHHHHH----HHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhc-CCCE
Q ss_pred EEEcChhHHHHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHHcCC----------
Q psy3835 1553 ILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLKIECEHKH---------- 1622 (1659)
Q Consensus 1553 iLdi~~~~~~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~~~e~~~~~---------- 1622 (1659)
|++-...+... .....++|||.+| .+...+|+. .|+..+.+++.+.+....+.+..+..
T Consensus 78 Vi~g~~~~~~~---~~~~d~~v~v~a~-~~~r~~R~~-------~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~ 146 (171)
T TIGR02173 78 VLESRLAGWIV---REYADVKIWLKAP-LEVRARRIA-------KREGKSLTVARSETIEREESEKRRYLKFYGIDIDDL 146 (171)
T ss_pred EEEecccceee---cCCcCEEEEEECC-HHHHHHHHH-------HccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Q ss_pred -cceEEEeCC-CCHHHHHHHHHHHH
Q psy3835 1623 -YISAVIPAG-VNIAYMCTQIQTAV 1645 (1659)
Q Consensus 1623 -~fd~vi~n~-~~~~~~~~~l~~ii 1645 (1659)
.||.+|..+ -+++. ++.+..++
T Consensus 147 ~~ydl~i~t~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 147 SIYDLVINTSNWDPNN-VDIILDAL 170 (171)
T ss_pred ccccEEEECCCCCHHH-HHHHHHHh
No 484
>PTZ00464 SNF-7-like protein; Provisional
Probab=87.98 E-value=52 Score=37.09 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 416 AQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAA--------IRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAM 487 (1659)
Q Consensus 416 leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l--------~~~~~~l~~el~~l~~~l~el~~eieele~el~~l~ 487 (1659)
+...+..+..+...+.+++..+..++...++.+... ..+--.+.+..+.++.++..+...+..++..+..+.
T Consensus 16 ~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie 95 (211)
T PTZ00464 16 LEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTE 95 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hHHhHHHHHHHH
Q psy3835 488 AVRMKAT--KDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKE-----LVEDKKTLSYQI 560 (1659)
Q Consensus 488 ~~l~~~~--~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~le~el~~-----l~~e~~~l~~el 560 (1659)
....... ..+..-...+..+..+++ ...++.+..++.+.......+..-+.. ...+-.++..|+
T Consensus 96 ~a~~~~~vv~amk~g~kaLK~~~k~i~---------id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~EL 166 (211)
T PTZ00464 96 SVKDTKVQVDAMKQAAKTLKKQFKKLN---------VDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGEL 166 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Q ss_pred HHHHHHH
Q psy3835 561 ETLKREI 567 (1659)
Q Consensus 561 e~Lk~ei 567 (1659)
+.|..++
T Consensus 167 e~Le~e~ 173 (211)
T PTZ00464 167 DALDFDM 173 (211)
T ss_pred HHHHHHH
No 485
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=87.96 E-value=3.2 Score=46.76 Aligned_cols=171 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred cCCCCCCCcEEEECCCh---HHHHHHHhhhCC---------Ccccccccceec-------------CChHHHHHh---cc
Q psy3835 1468 LNSEPVLRPVILVGALS---DTVTDKLLQDFP---------DKFVRCAPEIMH-------------CPQAAMEKG---LA 1519 (1659)
Q Consensus 1468 ~~~~~~~RpvVl~Gp~g---~~l~~~Ll~~~p---------~~f~~~v~~Ttr-------------vs~~~f~~~---i~ 1519 (1659)
+.+ +....|.|+||+| +|+.+.|....+ +.|....+.... ...+.|... +.
T Consensus 1 ~~~-~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 79 (207)
T TIGR00235 1 MDK-PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLK 79 (207)
T ss_pred CCC-CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHH
Q ss_pred CCceEEEEEeCCeeeeecHHHHHHHHHcCCCeEEEE-cChhHHHHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCC
Q psy3835 1520 DNLFVDYRKKGAYFECTSVAAVKDACDKNNAHVILD-VSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSL 1598 (1659)
Q Consensus 1520 ~~~flE~~~~~g~~YGts~~~V~~v~~~~gk~~iLd-i~~~~~~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~ 1598 (1659)
.|.-+.+-.|.-.........+. +.. ...+|+| +-.---..+.. ..-++|||.+|....+.+++. |-...
T Consensus 80 ~g~~v~~p~yd~~~~~~~~~~~~--~~~-~~~vIieG~~~~~~~~~~~--~~d~~I~v~~~~~~~l~R~~~----R~~~~ 150 (207)
T TIGR00235 80 NGSPIDVPVYDYVNHTRPKETVH--IEP-KDVVILEGIMPLFDERLRD--LMDLKIFVDTPLDIRLIRRIE----RDINE 150 (207)
T ss_pred CCCCEecccceeecCCCCCceEE--eCC-CCEEEEEehhhhchHhHHH--hCCEEEEEECChhHHHHHHHH----HHHHh
Q ss_pred CcccHHHHHHHHH-----HHHHHHHHcCCcceEEEeCCCCHHHHHHHHHHHHHhh
Q psy3835 1599 DKVTAKAAKEMYE-----HGLKIECEHKHYISAVIPAGVNIAYMCTQIQTAVELE 1648 (1659)
Q Consensus 1599 ~~~~~~~~~~~~~-----~a~~~e~~~~~~fd~vi~n~~~~~~~~~~l~~ii~~~ 1648 (1659)
...+.+.+...+. ............+|.||.|+.+.+.++.-|-.-|...
T Consensus 151 rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~~~~~~~~~~~~~~~~ 205 (207)
T TIGR00235 151 RGRSLDSVIDQYRKTVRPMYEQFVEPTKQYADLIIPEGGRNEVAINVLDTKIKHL 205 (207)
T ss_pred hCCCHHHHHHHHHHhhhhhHHHhCcccccccEEEEcCCCCchHHHHHHHHHHHHh
No 486
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=87.91 E-value=8.7 Score=41.27 Aligned_cols=140 Identities=15% Similarity=0.089 Sum_probs=0.0
Q ss_pred EEEECCCh---HHHHHHHhhhCCCcccccccceecCChHHHHHhccCCceEEEEEeCCeeeeecHHHHHHHHH---cCCC
Q psy3835 1477 VILVGALS---DTVTDKLLQDFPDKFVRCAPEIMHCPQAAMEKGLADNLFVDYRKKGAYFECTSVAAVKDACD---KNNA 1550 (1659)
Q Consensus 1477 vVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttrvs~~~f~~~i~~~~flE~~~~~g~~YGts~~~V~~v~~---~~gk 1550 (1659)
|+|+|++| +|+..+|- ...-... .+.+.++.+.++..-.-.-..|-.-.+.++..+. . ..
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i------------~l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~~-~~ 68 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVI------------ELNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELLR-EG 68 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCcee------------eHHHHHHhcCCeeccCCccceEEeeHHHHHHHHHHHhc-cC
Q ss_pred eEEEEcChhHHHHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHH--HHHHHHHHHcCCcceEEE
Q psy3835 1551 HVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMY--EHGLKIECEHKHYISAVI 1628 (1659)
Q Consensus 1551 ~~iLdi~~~~~~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~--~~a~~~e~~~~~~fd~vi 1628 (1659)
.+|+|-++..+-. .|=+|||.-...+.|.+|++ .| ..+++.+.+-+ +...-+-.+.-..|+.++
T Consensus 69 ~~Ivd~H~~hl~~------~~dlVvVLR~~p~~L~~RLk---~R-----Gy~~eKI~ENveAEi~~vi~~EA~E~~~~v~ 134 (180)
T COG1936 69 SGIVDSHLSHLLP------DCDLVVVLRADPEVLYERLK---GR-----GYSEEKILENVEAEILDVILIEAVERFEAVI 134 (180)
T ss_pred CeEeechhhhcCC------CCCEEEEEcCCHHHHHHHHH---Hc-----CCCHHHHHHHHHHHHHHHHHHHHHHhcCceE
Q ss_pred e----CCCCHHHHHHHHHHHH
Q psy3835 1629 P----AGVNIAYMCTQIQTAV 1645 (1659)
Q Consensus 1629 ~----n~~~~~~~~~~l~~ii 1645 (1659)
. |. +.+.++..+..+|
T Consensus 135 evdtt~~-s~ee~~~~i~~ii 154 (180)
T COG1936 135 EVDTTNR-SPEEVAEEIIDII 154 (180)
T ss_pred EEECCCC-CHHHHHHHHHHHH
No 487
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=87.89 E-value=22 Score=35.82 Aligned_cols=104 Identities=19% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 316 QHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRSGCCTQPESDDAGSADSLNQHYMSALNKYETIKDEYDAL 395 (1659)
Q Consensus 316 ~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk~~~~~~e~~~~~~~~~~l~~~~~~le~~le~l~~e~~~l 395 (1659)
.+.+...++..+++++..+-.+...++.++.+.+.-++++. .+.+...-|...-..+-..... +-.++|
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele------~l~eD~~vYk~VG~llvk~~k~-----~~~~eL 75 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELE------KLDEDAPVYKKVGNLLVKVSKE-----EAVDEL 75 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCcccHHHHHhhhHHhhhhHH-----HHHHHH
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 396 RKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDM 430 (1659)
Q Consensus 396 ~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l 430 (1659)
..+.+.++..++.+.++.+.+++++.+++..+...
T Consensus 76 ~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 76 EERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=87.83 E-value=0.94 Score=53.16 Aligned_cols=146 Identities=10% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 391 EYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALA 470 (1659)
Q Consensus 391 e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~ 470 (1659)
+..+.-.-|-.+..........+..+.+.+..++...+.+...+..+...+..|..++..+...+.+...++..+...+.
T Consensus 8 QRREVV~LILslTss~s~s~GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~ 87 (326)
T PF04582_consen 8 QRREVVGLILSLTSSISTSPGDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVT 87 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 471 KVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAV 536 (1659)
Q Consensus 471 el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele 536 (1659)
.++..+..+...+..+...+......+..++..+..+..++..++.......-.+..|+..+..++
T Consensus 88 ~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 88 SLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
No 489
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=87.73 E-value=13 Score=36.36 Aligned_cols=96 Identities=11% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 381 ALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALR 460 (1659)
Q Consensus 381 le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~ 460 (1659)
+..++..+...+..+......+..++..+.+++..+..++.....++-.+.+..+.+..++..|...+.....-...+..
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3835 461 ERNEYQEALAKVQQQH 476 (1659)
Q Consensus 461 el~~l~~~l~el~~ei 476 (1659)
--..+...+..++.++
T Consensus 81 ~E~~~~~~l~~~Eke~ 96 (96)
T PF08647_consen 81 TEKEFVRKLKNLEKEL 96 (96)
T ss_pred HHHHHHHHHHHhhccC
No 490
>KOG1320|consensus
Probab=87.72 E-value=0.98 Score=55.91 Aligned_cols=63 Identities=22% Similarity=0.236 Sum_probs=0.0
Q ss_pred cEEEEEeCCCChhhhcCCCCCCEEEeeCCeecCCCCHHHHHHHHHhCCCeEEEEEEecCCccc
Q psy3835 1152 GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYH 1214 (1659)
Q Consensus 1152 gv~I~~V~~gs~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~~ 1214 (1659)
+++|+.|.||+++...|+.+||+|+.|||.+|.++.|..-..-.-..++.|.++.++..+..+
T Consensus 399 ~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~~~l~~~i~~~~~~~~v~vl~~~~~e~~t 461 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNLKHLYELIEECSTEDKVAVLDRRSAEDAT 461 (473)
T ss_pred EEEEEEeccCCCcccccccCCCEEEEECCEEeechHHHHHHHHhcCcCceEEEEEecCcccee
No 491
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=87.66 E-value=13 Score=50.24 Aligned_cols=140 Identities=9% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 379 MSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEV--ARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWD 456 (1659)
Q Consensus 379 ~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel--~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~ 456 (1659)
..++.+.+......+-+.+++.+++.++...+.+++.+..+. -....+......++..++.++..++.+..++...+.
T Consensus 256 ~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~ 335 (726)
T PRK09841 256 QNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYK 335 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 457 IALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVH 522 (1659)
Q Consensus 457 ~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~ 522 (1659)
.-.=.+..++.++..++.++..++.++..+- ..+.++.+++.+.+..+.-+..+.+...++.
T Consensus 336 ~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p----~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~ 397 (726)
T PRK09841 336 KDHPTYRALLEKRQTLEQERKRLNKRVSAMP----STQQEVLRLSRDVEAGRAVYLQLLNRQQELS 397 (726)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=87.64 E-value=87 Score=39.31 Aligned_cols=384 Identities=7% Similarity=0.049 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q psy3835 290 PLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQL-EAAAQESSSLRSKYSDLISDKQRLDRELLELRSGCCTQPESDDA 368 (1659)
Q Consensus 290 e~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~l-~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk~~~~~~e~~~~~ 368 (1659)
.++...+..+...+..-+...+..-..+......- ..+..+...+..++..+-++....-.+.+..-
T Consensus 127 qe~~~rl~~L~~~Lrqee~~re~a~~aL~k~qe~~~~k~d~E~arm~aqi~~l~eEmS~r~l~reakl------------ 194 (531)
T PF15450_consen 127 QEAGLRLSKLQDMLRQEEQGREDACSALQKSQEEDSQKVDNEVARMQAQITKLGEEMSLRFLKREAKL------------ 194 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcchhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q psy3835 369 GSADSLNQHYMSALNKYETIKDEYDALRKRF-DDLINTHSTAVDKLELAQEEVARIKK--------QCEDMNQEKNTALR 439 (1659)
Q Consensus 369 ~~~~~l~~~~~~le~~le~l~~e~~~l~~~~-~el~~~l~~~~~~le~leeel~~lk~--------e~~~l~~~~~~l~~ 439 (1659)
-..++..+..+++.+..-+.......+.+ ++++.....+....+..-..+..-.+ +...+..+...+.+
T Consensus 195 --~~~lqk~f~alEk~mka~e~~rl~~E~~lreElE~rW~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~ 272 (531)
T PF15450_consen 195 --CSFLQKSFLALEKRMKAQESSRLRTERSLREELESRWQKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDE 272 (531)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 440 ERNGLKQQCTAAIRQWDIALR-ERNEYQEALAKVQQQHEDAVKEINT-AMAVRMKATKDLKRLTEERNAAMQEYSLIMSE 517 (1659)
Q Consensus 440 ei~~L~~el~~l~~~~~~l~~-el~~l~~~l~el~~eieele~el~~-l~~~l~~~~~eleelkee~~~~~~el~~l~~e 517 (1659)
-+..|+.-+......+..+-. ++..-..+..-....+++++..+.. +..-.....-........++.+++....+...
T Consensus 273 AV~~Ltk~v~~~q~sL~kvl~aE~kaR~~k~~~e~sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~s 352 (531)
T PF15450_consen 273 AVAQLTKFVQQNQKSLNKVLNAEQKARDAKEKLEESKAEELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDS 352 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 518 RDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAAKEE 597 (1659)
Q Consensus 518 ~~~l~~el~~L~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~~~~e 597 (1659)
...+...+..|...+..+..++.--+..+..-..+... .-....+..++.+..-..++...+.+++++++.+-.++.+
T Consensus 353 v~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~--e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~ 430 (531)
T PF15450_consen 353 VAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKN--EWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEE 430 (531)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q ss_pred HHHHHHHHHHHHHhhcccchhhHhhhhHHHHHhhhhHhhhhhhhhhhH-----HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy3835 598 CQREAFHARFEYAMRMGERDSSRKERNEVEAASMDLFGKCQKERMDNL-----EANQEIDRLRKHTDKLQAELQDQSVNY 672 (1659)
Q Consensus 598 ~q~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~Ele~lr~~l~~l~~el~~~~~~~ 672 (1659)
+...|.-.+.+..-+. ..+-..+...+..+++++...-+... ..-..+.+++.++. ...+
T Consensus 431 vs~Kc~~~Ksd~d~kI------dtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~rkiaeiqg~l~--~~qi------- 495 (531)
T PF15450_consen 431 VSDKCDLHKSDSDTKI------DTEGKAREREVGAVRQELATLLSSVQLLKEDNPGRKIAEIQGKLA--TNQI------- 495 (531)
T ss_pred HHHHHHHHHhhhhhhc------cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHH--HHHH-------
Q ss_pred HHHHHHHHHHHHHhhhhccccccccchhHH--hhhhhh
Q psy3835 673 LFILTESIQEAEVSKRRRDWAFSERDKIEV--IDSYHT 708 (1659)
Q Consensus 673 ~~~l~e~~~e~~~~~~~~~~~~~~~~k~~~--~~~lr~ 708 (1659)
...-+.....|.=.+..|..-.|... ...||.
T Consensus 496 ----~kle~siq~nKtiqn~kfntEtk~R~ee~a~Lre 529 (531)
T PF15450_consen 496 ----MKLENSIQTNKTIQNLKFNTETKLRTEEVAALRE 529 (531)
T ss_pred ----HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh
No 493
>KOG1962|consensus
Probab=87.49 E-value=7.6 Score=43.16 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 397 KRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQH 476 (1659)
Q Consensus 397 ~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~el~~ei 476 (1659)
.++-.+..++-..+.. +++.++...++...+.... +..+...+..++..++.+++....+++.++++...++++.
T Consensus 114 ~R~~~ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~ 188 (216)
T KOG1962|consen 114 RRLHTLLRELATLRAN-EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQS 188 (216)
T ss_pred HHHHHHHHHHHHHHhh-HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3835 477 EDAVKEINTAMAVRMKATKDLK 498 (1659)
Q Consensus 477 eele~el~~l~~~l~~~~~ele 498 (1659)
+++..+++.+.++.++++++++
T Consensus 189 e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 189 EGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHcccHHHHHHHHHHHHHHHHh
No 494
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=87.37 E-value=1 Score=52.81 Aligned_cols=124 Identities=7% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 420 VARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKR 499 (1659)
Q Consensus 420 l~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~elee 499 (1659)
+..+.+++..++.....+...+..+...+..++..+.++...+.+....+..+...+..++..+..+...+..+...+..
T Consensus 30 Ls~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~ 109 (326)
T PF04582_consen 30 LSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSD 109 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 500 LTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLE 543 (1659)
Q Consensus 500 lkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~le 543 (1659)
....+..++..+..+..++..++..+..+.-.+..++.+++.+|
T Consensus 110 h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 110 HSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
No 495
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.36 E-value=1e+02 Score=39.85 Aligned_cols=266 Identities=11% Similarity=0.069 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q psy3835 288 TMPLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQ--ESSSLRSKYSDLISDKQRLDRELLELRSGCCTQPES 365 (1659)
Q Consensus 288 Ele~L~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~--e~~~l~~e~~el~~e~~~Le~el~~lk~~~~~~e~~ 365 (1659)
.++.|+++++.++.+.+-+...+...+..+.+++.+++.+.. +++=....+..+..++.++...++++.
T Consensus 617 Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i~~~~fa~ID~~Sa~rqIael~~~lE~L~--------- 687 (1104)
T COG4913 617 KVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHIQALNFASIDLPSAQRQIAELQARLERLT--------- 687 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcchhhcchhhHHHHHHHHHHHHHHhc---------
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 366 DDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLK 445 (1659)
Q Consensus 366 ~~~~~~~~l~~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~ 445 (1659)
...+.+.-+...+...+.....+...+..--.+.-..++.++..+....++..--..--...-+..-..-=.+
T Consensus 688 -------~t~~~~~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k~~lkrA~~~~~k~~si~~~~~t~~~q~~~~a~f~q 760 (1104)
T COG4913 688 -------HTQSDIAIAKAALDAAQTRQKVLERQYQQEVTECAGLKKDLKRAAMLSRKVHSIAKQGMTGALQALGAAHFPQ 760 (1104)
T ss_pred -------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhh
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 446 QQCTAAIRQWDIAL-RERNEYQEALAKVQQQHEDAVKEINT-AMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHK 523 (1659)
Q Consensus 446 ~el~~l~~~~~~l~-~el~~l~~~l~el~~eieele~el~~-l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~ 523 (1659)
.-........+... +-...+.+++.....++..++.++.. +..-+.....++.++..+++.+-+-+..+..=.....-
T Consensus 761 ~a~~~h~~~vd~~~~~~r~~LqkrIDa~na~Lrrl~~~Iig~m~~~k~~~~a~~~e~~ael~~ipey~~rL~~L~~D~Lp 840 (1104)
T COG4913 761 VAPEQHDDIVDIERIEHRRQLQKRIDAVNARLRRLREEIIGRMSDAKKEDTAALSEVGAELDDIPEYLARLQTLTEDALP 840 (1104)
T ss_pred hChHhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhhccCHhHHHHHHHHHHhhhhhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHH
Q psy3835 524 EMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASA 570 (1659)
Q Consensus 524 el~~L~~el~ele~ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l 570 (1659)
+...--.++-. ......+-+-..-+..+...++++|+.+...+...
T Consensus 841 ef~arF~~llN-~~S~~~v~q~~~~L~~er~~IeERIe~IN~SL~~v 886 (1104)
T COG4913 841 EFLARFQELLN-RSSDDGVTQLLSHLDHERALIEERIEAINDSLRRV 886 (1104)
T ss_pred HHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 496
>KOG4403|consensus
Probab=87.26 E-value=77 Score=38.31 Aligned_cols=161 Identities=12% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 396 RKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCT---AAIRQWDIALRERNEYQEALAKV 472 (1659)
Q Consensus 396 ~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~---~l~~~~~~l~~el~~l~~~l~el 472 (1659)
.+...+-..++......+..++..+.++++.++....+.....-+.-.|+..+. .|....+.++.+... ++++.+
T Consensus 237 nk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~r--kelE~l 314 (575)
T KOG4403|consen 237 NKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSR--KELEQL 314 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHH--HHHHHH
Q ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHH
Q psy3835 473 QQQHEDAVKEINTA----------MAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKE---------------MEK 527 (1659)
Q Consensus 473 ~~eieele~el~~l----------~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~e---------------l~~ 527 (1659)
+.++++.+++++.- .=-....+-|+.-+..++..+..++....+..+++++. +..
T Consensus 315 R~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgsslDd 394 (575)
T KOG4403|consen 315 RVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSSLDD 394 (575)
T ss_pred HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccchhh
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhHHHHHH
Q psy3835 528 LSEDLTQAVRKIKTLEMENKELVEDKKTLSY 558 (1659)
Q Consensus 528 L~~el~ele~ki~~le~el~~l~~e~~~l~~ 558 (1659)
...++.+++..+..+.+.+.+-..+-.+++.
T Consensus 395 VD~kIleak~al~evtt~lrErl~RWqQIE~ 425 (575)
T KOG4403|consen 395 VDHKILEAKSALSEVTTLLRERLHRWQQIES 425 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>KOG2077|consensus
Probab=87.26 E-value=90 Score=39.07 Aligned_cols=254 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchH
Q psy3835 293 VRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRSGCCTQPESDDAGSAD 372 (1659)
Q Consensus 293 ~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk~~~~~~e~~~~~~~~~ 372 (1659)
.+-.+++.--+=.+-+.|+.+-..-++-..+|+-|++.-+++..+|...+.....++++..+.. +
T Consensus 25 Ee~VKeLMPLVVNVLEnLD~v~~EnqEhevELElLrEDNEQl~tqYErEkalR~q~eqKfie~e---------------D 89 (832)
T KOG2077|consen 25 EEVVKELMPLVVNVLENLDSVLSENQEHEVELELLREDNEQLITQYEREKALRTQLEQKFIEGE---------------D 89 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhcchH---------------H
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Q psy3835 373 SLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEK------------------ 434 (1659)
Q Consensus 373 ~l~~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~------------------ 434 (1659)
.+.....++..+.+-+.-.+.-|.-+...+......+.+.--..+-+.++|.....++-+..
T Consensus 90 ~Le~~~kel~~k~e~~e~~~r~Lelkakn~td~asrleEre~e~k~ef~~LhqR~tem~rthv~h~ersk~~qgg~k~~t 169 (832)
T KOG2077|consen 90 QLESTAKELIRKEEPIELGIRPLELKAKNLTDDASRLEEREGEEKWEFQELHQRHTEMPRTHVSHKERSKVSQGGSKATT 169 (832)
T ss_pred HHHhhHHHHHhhhcchhheeeeeccccccccchhhhhcccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcCccccc
Q ss_pred --------------------------------------------------------------------------------
Q psy3835 435 -------------------------------------------------------------------------------- 434 (1659)
Q Consensus 435 -------------------------------------------------------------------------------- 434 (1659)
T Consensus 170 ~~s~p~~~~~~rpt~~~~~~~~~g~vr~~~~~~~~~~~~h~~~~~~~~~~~~s~~sp~~~~~ss~~a~~~~tPeldm~p~ 249 (832)
T KOG2077|consen 170 PASTPNSDVATRPTDTPLKEENEGFVRVTDAPNKSEISKHIEVQVAQETRNVSTGSPENEEKSSVQAIIESTPELDMDPD 249 (832)
T ss_pred cccCCCCchhcCcCCCcccccccCeeEeeccccccccccceehhhhhhhhccCCCCCccCccccccccccCCcccccCCC
Q ss_pred -----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 435 -----------------------------------------------NTALRERNGLKQQCTAAIRQWDIALRERNEYQE 467 (1659)
Q Consensus 435 -----------------------------------------------~~l~~ei~~L~~el~~l~~~~~~l~~el~~l~~ 467 (1659)
-..-++++.|-.+-.+|-.-...+.--.+.+..
T Consensus 250 ~~~~r~~ssPtqgienkAf~~nt~sl~eels~aGs~liGdvdegAdllGMGrEVeNLilENsqLLetKNALNiVKNDLIa 329 (832)
T KOG2077|consen 250 LSGYRGSSSPTQGIENKAFDRNTESLFEELSSAGSGLIGDVDEGADLLGMGREVENLILENSQLLETKNALNIVKNDLIA 329 (832)
T ss_pred cccccCCCCCcccchhhcccccccchhhhhhhccccccccccchhhhhcchHHHHHHHHhhHHHHhhhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3835 468 ALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENK 547 (1659)
Q Consensus 468 ~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el~ele~ki~~le~el~ 547 (1659)
+..+|..+.+-|+.++...++...++++++.+++++++.++++......+...-...--.......-...++++.-.+..
T Consensus 330 kVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRN 409 (832)
T KOG2077|consen 330 KVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERN 409 (832)
T ss_pred HHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHHh
Q ss_pred hhHHhHHHHHHHHH
Q psy3835 548 ELVEDKKTLSYQIE 561 (1659)
Q Consensus 548 ~l~~e~~~l~~ele 561 (1659)
.-++.+-+|++-+.
T Consensus 410 qYKErLMELqEavr 423 (832)
T KOG2077|consen 410 QYKERLMELQEAVR 423 (832)
T ss_pred HHHHHHHHHHHHHh
No 498
>PTZ00121 MAEBL; Provisional
Probab=87.20 E-value=1.5e+02 Score=41.57 Aligned_cols=347 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchH
Q psy3835 293 VRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRSGCCTQPESDDAGSAD 372 (1659)
Q Consensus 293 ~~q~~E~~~rl~~le~El~~l~~~l~el~~~l~~lk~e~~~l~~e~~el~~e~~~Le~el~~lk~~~~~~e~~~~~~~~~ 372 (1659)
..+..+...+-..-.+....++....+...+.++++...+..+..-..-+.+-.....++...+
T Consensus 1468 e~kka~~~kk~~ee~kka~~~kkk~ee~~kk~~~~kk~~e~~kk~~~~kkae~~~k~~e~kkae---------------- 1531 (2084)
T PTZ00121 1468 EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE---------------- 1531 (2084)
T ss_pred HHHhHHHHHhhHHHHHhHHHHhhhhHHHHHHHHHHhhhhHHHhhHHHhhHHHHHHHHHHHHHHH----------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 373 SLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAI 452 (1659)
Q Consensus 373 ~l~~~~~~le~~le~l~~e~~~l~~~~~el~~~l~~~~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~ 452 (1659)
+....-+.+...-.....+..+.-..-..+-.....+....++...-....-.++.+....+..++-.|-.+-....
T Consensus 1532 ---eaKKaeEaKKaEE~kKAee~kKaee~kK~Ee~kk~eekr~aeE~k~~a~rkaee~~~~~~~~~~~~~~~~~~~~~~k 1608 (2084)
T PTZ00121 1532 ---EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK 1608 (2084)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHhhhhhhhhhhhhhhhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 453 RQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDL 532 (1659)
Q Consensus 453 ~~~~~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee~~~~~~el~~l~~e~~~l~~el~~L~~el 532 (1659)
.....-..+-..-.++++..+++...+++......+...++++.-..-++......+.-....++..+..+....-+++.
T Consensus 1609 ae~~kk~ee~~kk~E~~kk~eeekKk~Eelkk~eeE~kkk~Ea~kK~EEE~kkraeEeaKk~EEekKKaEe~kk~~ee~~ 1688 (2084)
T PTZ00121 1609 AEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEK 1688 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q ss_pred HHHHH--HHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 533 TQAVR--KIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAAKEECQREAFHARFEYA 610 (1659)
Q Consensus 533 ~ele~--ki~~le~el~~l~~e~~~l~~ele~Lk~ei~~l~~~~~~aieE~e~l~er~~e~~~~~~e~q~e~~~~~~~~~ 610 (1659)
...+. +.+.-...+..+...-.+-...++.+++.-++-.-...++..+-++-+.+.++...+.++-.+-.+..+.+-+
T Consensus 1689 k~~e~~kk~~ee~k~~~~~~k~~~e~~~~~e~~kk~eee~k~k~ee~kkk~ee~kkk~e~~~k~eeek~ki~~~kkeeek 1768 (2084)
T PTZ00121 1689 KAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEK 1768 (2084)
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q ss_pred hhcccchhhHhhhhHHHHHhhhhHhhhhhhhhhhH-HHHHHHHHHHHHHHHHHHH
Q psy3835 611 MRMGERDSSRKERNEVEAASMDLFGKCQKERMDNL-EANQEIDRLRKHTDKLQAE 664 (1659)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~Ele~lr~~l~~l~~e 664 (1659)
..+..+.+.+..+++ .|..+-....+... ....+++....-+.+..++
T Consensus 1769 kae~~RKQQEAaLed------gLeaE~e~rs~aR~QqV~dEVdkY~AIIeqrIQq 1817 (2084)
T PTZ00121 1769 KAEEIRKEKEAVIEE------ELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEG 1817 (2084)
T ss_pred hHHHHHHHHHHHHHH------HhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
No 499
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=86.99 E-value=17 Score=38.22 Aligned_cols=94 Identities=12% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
Q psy3835 410 VDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWD--------------------------------- 456 (1659)
Q Consensus 410 ~~~le~leeel~~lk~e~~~l~~~~~~l~~ei~~L~~el~~l~~~~~--------------------------------- 456 (1659)
...++.+...+..++.++..+..++..+...+.++..-++.++.-..
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~ 84 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGA 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCC
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3835 457 ------IALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEE 503 (1659)
Q Consensus 457 ------~l~~el~~l~~~l~el~~eieele~el~~l~~~l~~~~~eleelkee 503 (1659)
...+-++.++.+++.+...+..++.++..++..+..+...+.++..+
T Consensus 85 g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 85 GYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=86.96 E-value=5.6 Score=42.73 Aligned_cols=155 Identities=14% Similarity=0.047 Sum_probs=0.0
Q ss_pred EEEECCCh---HHHHHHHhhhCCCcccccccceecCChHHHHHhccCCceEEEEEeCCeeeeecHHHHHHHHHcCCCeEE
Q psy3835 1477 VILVGALS---DTVTDKLLQDFPDKFVRCAPEIMHCPQAAMEKGLADNLFVDYRKKGAYFECTSVAAVKDACDKNNAHVI 1553 (1659)
Q Consensus 1477 vVl~Gp~g---~~l~~~Ll~~~p~~f~~~v~~Ttrvs~~~f~~~i~~~~flE~~~~~g~~YGts~~~V~~v~~~~gk~~i 1553 (1659)
|+|+||+| +|+.+.|....+..|...-....+.....+...+.-.. .....+|-.-.+.+...+.. |+.+|
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~-~~~~V 74 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLND-----DDRWPWLQNLNDASTAAAAK-NKVGI 74 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCCh-----hhHHHHHHHHHHHHHHHHhc-CCCEE
Q ss_pred EEcC---hhHHHHHHhcCCccEEEEEecCCHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHHcCCcceEEEeC
Q psy3835 1554 LDVS---LAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLKIECEHKHYISAVIPA 1630 (1659)
Q Consensus 1554 Ldi~---~~~~~~l~~~~~~pivIfI~pps~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~a~~~e~~~~~~fd~vi~n 1630 (1659)
++.. ......++.......+||+..| .+.+.+|.. .| .......+.+..++.....-...-.+. .+|.+
T Consensus 75 i~~t~~~~~~r~~~~~~~~~~~~i~l~~~-~e~~~~R~~---~R--~~~~~~~~~i~~~~~~~~~~~~~e~~~--~~id~ 146 (163)
T TIGR01313 75 ITCSALKRHYRDILREAEPNLHFIYLSGD-KDVILERMK---AR--KGHFMKADMLESQFAALEEPLADETDV--LRVDI 146 (163)
T ss_pred EEecccHHHHHHHHHhcCCCEEEEEEeCC-HHHHHHHHH---hc--cCCCCCHHHHHHHHHHhCCCCCCCCce--EEEEC
Q ss_pred CCCHHHHHHHHHHHH
Q psy3835 1631 GVNIAYMCTQIQTAV 1645 (1659)
Q Consensus 1631 ~~~~~~~~~~l~~ii 1645 (1659)
+...+....++..+|
T Consensus 147 ~~~~~~~~~~~~~~~ 161 (163)
T TIGR01313 147 DQPLEGVEEDCIAVV 161 (163)
T ss_pred CCCHHHHHHHHHHHH
Done!