RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3835
(1659 letters)
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 260 bits (664), Expect = 6e-77
Identities = 102/424 (24%), Positives = 176/424 (41%), Gaps = 44/424 (10%)
Query: 1236 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAA 1295
P +++ RK ++G+ L GGN VGI+V V S GL GD+IL N D
Sbjct: 7 RPSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNI 66
Query: 1296 TAEEA--AYELAKPADKVTVLAQYSVERYNEV-KDKPGDSFYMRALFSRTGDLGDALQLR 1352
EEA ++VT+LAQ + Y + + GDSFY+R F + L
Sbjct: 67 IREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKE--SPYGLS 124
Query: 1353 FHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYKVEEELLLRRSLGDLESD 1412
F+K ++ V +T++NG G W A + + + GIIP+K + E+ ++ +L
Sbjct: 125 FNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGG 184
Query: 1413 ARRATRRSFFRRKKHQRSDSKELASFSNINLGWYSDSGTLNEDSVSLASYQRVIRLNSEP 1472
R R R + NL + + +Y+RV+
Sbjct: 185 DRADFWRFRGLRSSKR-------------NLRKSREDLSAQPVQTKFPAYERVVLR-EAG 230
Query: 1473 VLRPVILVGALSDTVTDKLLQDFPDKFVRCAPEIMHCPQAAMEKGLADNLFVDYRKKGAY 1532
LRPV + G ++D +KL ++ PD + E G
Sbjct: 231 FLRPVTIFGPIADVAREKLAREEPDIYQIAKSEPRDAGTDQRSSG--------------- 275
Query: 1533 FECTSVAAVKDACDKNNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRD 1592
+ +K D++ H +LDV+ V+RL+ YPIV+ + S + +K ++
Sbjct: 276 --IIRLHTIKQIIDQDK-HALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRM--- 329
Query: 1593 GRYSSLDKVTAKAAKEMYEHGLKIECEHKHYISAVIPAGVNIAYMCTQIQTAVELEQSKT 1652
L + K+A+++YE K+ + H + I ++ A++ +Q++
Sbjct: 330 ----RLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQL 385
Query: 1653 LWVP 1656
+WV
Sbjct: 386 VWVS 389
Score = 66.0 bits (160), Expect = 4e-11
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 1128 ELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSAT 1187
++ V K + +G+++ + G+FV+ V E S A++ GL+ GDQ+L V ++ +
Sbjct: 9 SMKLVKFRKG-DSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNII 67
Query: 1188 YQLAASVLR--QCGNSITMLVQYSPDKYHELEGS 1219
+ A L G +T+L Q D Y + S
Sbjct: 68 REEAVLFLLDLPKGEEVTILAQKKKDVYRRIVES 101
Score = 41.0 bits (95), Expect = 0.003
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 202 GLTL----ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP 257
GL L + G+++ + S AAKEG L GD++L +NN + E + L D P
Sbjct: 22 GLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNI-IREEAVLFLLDLP 79
Query: 258 DVLTITTLKPTSLGEHSPRVHRKSVNSSTQTM 289
+T L + V +S
Sbjct: 80 KGEEVTILAQKKKDVYRRIVESDVGDSFYIRT 111
Score = 41.0 bits (95), Expect = 0.003
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 826 GLTL----ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP 881
GL L + G+++ + S AAKEG L GD++L +NN + E + L D P
Sbjct: 22 GLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNI-IREEAVLFLLDLP 79
Query: 882 DVLTITTLKPTSLGEHSPRVHRKSVNSSTQTM 913
+T L + V +S
Sbjct: 80 KGEEVTILAQKKKDVYRRIVESDVGDSFYIRT 111
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane
associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 255 bits (652), Expect = 8e-72
Identities = 142/622 (22%), Positives = 239/622 (38%), Gaps = 142/622 (22%)
Query: 1124 PHPGELRRVHIDKSVEPLGIQIQ-------CLDSGGVFVSTVSEHSLASQVG-LQVGDQL 1175
P ++ + + K + LG I ++V+ + E A + G LQ+GD++
Sbjct: 150 PPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKI 209
Query: 1176 LEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSG---- 1231
L V + + ++ A + L+ + + + V + Y + + S
Sbjct: 210 LAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEI 269
Query: 1232 ---------------------------------RGSGEPRFLMIETRKCSNLGISLVGG- 1257
EPR ++I R + LG ++VGG
Sbjct: 270 SHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIH-RGSTGLGFNIVGGE 328
Query: 1258 NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQ 1316
+ GI++ + +G +G LR GD+IL NG DLR A+ E+AA L VT++AQ
Sbjct: 329 DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQ 388
Query: 1317 YSVERYNEVKDKPGD-----------------------SFYMRALFSRTGDLGDAL---Q 1350
Y E Y+ + K D FY+RALF
Sbjct: 389 YKPEEYSRFEAKIHDLREQLMNSSLGSGTASLRSNPKRGFYIRALFDYDKTKDCGFLSQA 448
Query: 1351 LRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYKVEEELLLRRSLGDLE 1410
L F D+L+V + G W+A V +D G IPSK +VE
Sbjct: 449 LSFRFGDVLHVIDA---GDEEWWQARRVHSDSETDDIGFIPSKRRVE------------- 492
Query: 1411 SDARRATRRSFFRRKKHQRSDSKELASFSNINLGWYSDSGTLNEDSVSLASYQRVIRLNS 1470
RR + R K S S + SY+ V ++
Sbjct: 493 -------RREWSRLKAKDWG--------------SSSGSQGREDSV---LSYETVTQMEV 528
Query: 1471 EPVLRPVILVGALSDTVTDKLLQDFPDKFVRCAPEIMH---------------CPQAAME 1515
RP+I++G D D LL +FPDKF C P + ME
Sbjct: 529 HYA-RPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKME 587
Query: 1516 KGLADNLFVDYRKKGAYFECTSVAAVKDACDKNNAHVILDVSLAGVERLHRQHVYPIVLL 1575
K + + F++ + ++ TSV +V++ ++ H ILDVS V RL H++PI +
Sbjct: 588 KDIRAHKFIEAGQYNSHLYGTSVQSVREVAEQGK-HCILDVSANAVRRLQAAHLHPIAIF 646
Query: 1576 IKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLKIECEHKHYISAVIPAGVNIA 1635
I+ +S + + EI ++T + A++ ++ K+E E SA++ G +
Sbjct: 647 IRPRSLENVLEIN----------KRITEEQARKAFDRATKLEQEFTECFSAIVE-GDSFE 695
Query: 1636 YMCTQIQTAVELEQSKTLWVPS 1657
+ +++ +E +WVP+
Sbjct: 696 EIYHKVKRVIEDLSGPYIWVPA 717
Score = 105 bits (262), Expect = 5e-23
Identities = 67/413 (16%), Positives = 122/413 (29%), Gaps = 87/413 (21%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
+ ++I KI PG AA++G L V D +L +N V ++
Sbjct: 88 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVT--------------------- 126
Query: 890 KPTSLGEHSPRVHRKSVNSSTQTMPLYVRYGDQPPPDSYQVPKTSTK---SHDPAKPSPS 946
HS V S + + R ++ K S +
Sbjct: 127 -------HSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQH 179
Query: 947 SSGGGGKWDSLREKMQGVRRRGGGEEGKRSNRNSSPPVTFEQEQVDAIAELDSFVHTHSP 1006
G + + + + G + G D I ++S
Sbjct: 180 IPGDNSIYVTKIIEGGAAHKDGRLQIG------------------DKILAVNSVGLEDVM 221
Query: 1007 SDGSSPHYHKAPRSLASAHSHPGGPNNGAGGTSYETSSYHSYDAAGTFPRKKENQRFRIP 1066
+ + + + P + ++ +S
Sbjct: 222 HEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPT 281
Query: 1067 SNPSVAFKTSGTKMSNGSIEKTSERGSPMPTFHVEVLSPGLRQNKRNSLPDYCCSHKPHP 1126
+ + + + + P
Sbjct: 282 AMTPTSPRRYSPVAKDLL------------------------------------GEEDIP 305
Query: 1127 GELRRVHIDKSVEPLGIQIQ-CLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMR 1184
E RR+ I + LG I D G+F+S + A G L+ GDQ+L V G+++R
Sbjct: 306 REPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR 365
Query: 1185 SATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGEP 1237
+A+++ AA L+ G ++T++ QY P++Y E E S GSG
Sbjct: 366 NASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLMNSSLGSGTA 418
Score = 98.4 bits (244), Expect = 7e-21
Identities = 49/269 (18%), Positives = 86/269 (31%), Gaps = 25/269 (9%)
Query: 1075 TSGTKMSNGSIEKTSERGSPMPTFHVEVLSPGLRQNKRNSLPDYCCSHKPHPGELRRVHI 1134
+ K + + SP + P + P Y + E + +
Sbjct: 7 VTAKKYRYQDEDTPPLKHSPAHLPNQANSPPVIVNTDTLEAPGYVNGTEGEM-EYEEITL 65
Query: 1135 DKSVEPLGIQI-------QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSA 1186
++ LG I D +F++ + A+Q G L+V D +L V +++R
Sbjct: 66 ERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREV 125
Query: 1187 TYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGEPRFLMIETRK 1246
T+ A L++ G+ + + V ++ E +G F +
Sbjct: 126 THSAAVEALKEAGSIVRLYVMRRKPPAEKVM---------EIKLIKGPKGLGFSIAGGVG 176
Query: 1247 CSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELA 1305
+ IYV + G + G L+ GD+IL N L E+A L
Sbjct: 177 ------NQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALK 230
Query: 1306 KPADKVTVLAQYSVERYNEVKDKPGDSFY 1334
D V + Y P D
Sbjct: 231 NTYDVVYLKVAKPSNAYLSDSYAPPDITT 259
Score = 86.1 bits (212), Expect = 5e-17
Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 17/219 (7%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARSLVTTQLQLNNSYDH 825
+VND I+ VN +D V+ +E ++ +G+ + + RR+ A ++ +L
Sbjct: 109 RVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLI-KGPKGL 167
Query: 826 GLTL-----------ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGM 874
G ++ ++ +Y+ KI G A K+G L +GD++L++N+ ++ + + +
Sbjct: 168 GFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHE-DAV 226
Query: 875 ALLSDSPDVLTITTLKPTSLGEHSPRVHRKSVNSSTQTMPLYVRYGDQPPPDSYQVPKTS 934
A L ++ DV+ + KP++ S +Q + T+
Sbjct: 227 AALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLD----NEISHSSYLGTDYPTA 282
Query: 935 TKSHDPAKPSPSSSGGGGKWDSLREKMQGVRRRGGGEEG 973
P + SP + G+ D RE + V RG G
Sbjct: 283 MTPTSPRRYSPVAKDLLGEEDIPREPRRIVIHRGSTGLG 321
Score = 82.6 bits (203), Expect = 7e-16
Identities = 45/291 (15%), Positives = 112/291 (38%), Gaps = 29/291 (9%)
Query: 11 PSENREDQNHVVVPIHKTQVEKESRMLQLHSVSHNYSHDSAIDTDLQEWDTEVLDMNLTN 70
++ Q+ P+ + ++ + + + ++ + E + E ++ L
Sbjct: 8 TAKKYRYQDEDTPPLKHSPAHLPNQANSPPVIVNTDTLEAPGYVNGTEGEMEYEEITLER 67
Query: 71 LSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLKKKEEVARI-KKQCEDM 127
N LG + GG D+P +D SI+++ I+ G DG+L+ + + + + ++
Sbjct: 68 --GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREV 125
Query: 128 NQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVT 187
++ + +R V ++ A K + +
Sbjct: 126 THS------AAVEALKEAGSIVR----------------LYVMRRKPPAEKVMEIKLIKG 163
Query: 188 NYLDGLQLNNSYD-HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSA 246
G + + ++ +Y+ KI G A K+G L +GD++L++N+ ++ +
Sbjct: 164 PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHE 223
Query: 247 REGMALLSDSPDVLTITTLKPTSLGEHSPRVHRKSVNSSTQTMPLYVRQHN 297
+ +A L ++ DV+ + KP++ S +Q + + +
Sbjct: 224 -DAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSS 273
Score = 63.8 bits (154), Expect = 4e-10
Identities = 42/268 (15%), Positives = 79/268 (29%), Gaps = 12/268 (4%)
Query: 1219 SGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG-------NAVGIYVHSVQSGS 1271
+ + V+G + R S LG S+ GG + I++ + G
Sbjct: 41 NTDTLEAPGYVNGTEGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGG 100
Query: 1272 LGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKPG 1330
G LR D IL N D+R T A L + V + +V +
Sbjct: 101 AAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKL 160
Query: 1331 DSFYMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGII 1390
FS G +G+ + D + G H L D +
Sbjct: 161 IKGPKGLGFSIAGGVGN----QHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVG 216
Query: 1391 PSKYKVEEELLLRRSLGDLESDARRATRRSFFRRKKHQRSDSKELASFSNINLGWYSDSG 1450
E+ + ++ D+ ++ + + + + S G
Sbjct: 217 LEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLG 276
Query: 1451 TLNEDSVSLASYQRVIRLNSEPVLRPVI 1478
T +++ S +R + + + I
Sbjct: 277 TDYPTAMTPTSPRRYSPVAKDLLGEEDI 304
Score = 54.9 bits (131), Expect = 2e-07
Identities = 49/332 (14%), Positives = 99/332 (29%), Gaps = 52/332 (15%)
Query: 35 RMLQLHSVS-HNYSHDSAIDTDLQ-----------EWDTEVLDMNLTNLSPNEALGLELV 82
+L ++ V +H +A++ + M + + + LG +
Sbjct: 113 SILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIA 172
Query: 83 GGRDDPFYPNDSSIYVSNIVKGSVTDGKLKKK------------------EEVARIKKQC 124
GG + P D+SIYV+ I++G + + E+ K
Sbjct: 173 GGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT 232
Query: 125 EDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAM 184
D+ K + N A + + + + + A+ +
Sbjct: 233 YDVVYLKVA--KPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRR 290
Query: 185 AVTNYLDGLQLNNSYDH-------------GLTL-----ESGLYICKISPGSLAAKEGSL 226
D L + G + G++I I G A G L
Sbjct: 291 YSPVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGEL 350
Query: 227 AVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL-KPTSLGEHSPRVHRKSVNSS 285
GD++LS+N + S + L ++ +TI KP ++H
Sbjct: 351 RKGDQILSVNGVDLRNA-SHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLM 409
Query: 286 TQTMPLYVRQHNETVRRGDHTLKELEYYRGQH 317
++ +RG + +Y + +
Sbjct: 410 NSSLGSGTASLRSNPKRGFYIRALFDYDKTKD 441
Score = 53.0 bits (126), Expect = 7e-07
Identities = 41/286 (14%), Positives = 70/286 (24%), Gaps = 23/286 (8%)
Query: 684 EVSKRRRDWAFSERDKIEVIDSYHTKHAGRHKRGKELDKNGGTWPKARSGPVIENGTGTI 743
E +D DKI ++S + L + P + +
Sbjct: 193 EGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSY 252
Query: 744 LHPRRHKERLPLSALLNNPPSYKVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIR 803
P + SY D + S I
Sbjct: 253 APPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIV 312
Query: 804 RRRVGARSLVTTQLQLNNSYDHGLTL-----ESGLYICKISPGSLAAKEGSLAVGDRVLS 858
R G+ L G + G++I I G A G L GD++LS
Sbjct: 313 IHR-GSTGL-------------GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILS 358
Query: 859 INNRTVDGLSSAREGMALLSDSPDVLTITTLKPTSLGEHSPRVHRKSVNSSTQTMPLYVR 918
+N + S + L ++ + T+ E R K + Q M +
Sbjct: 359 VNGVDLRNA-SHEQAAIALKNAGQTV---TIIAQYKPEEYSRFEAKIHDLREQLMNSSLG 414
Query: 919 YGDQPPPDSYQVPKTSTKSHDPAKPSPSSSGGGGKWDSLREKMQGV 964
G + + D K + + +
Sbjct: 415 SGTASLRSNPKRGFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVI 460
Score = 30.3 bits (67), Expect = 7.9
Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 9/106 (8%)
Query: 4 PPEPRQQPSENREDQNHVVVPIHKTQVEKESRMLQLHSVSH-NYSHDSAIDTDLQEWDTE 62
+ P H+ I + + S YS + ++ E
Sbjct: 248 LSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPRE 307
Query: 63 VLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSVTD 108
+ + + LG +VGG D I++S I+ G D
Sbjct: 308 PRRIVIHR--GSTGLGFNIVGGEDGE------GIFISFILAGGPAD 345
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion;
2.90A {Homo sapiens}
Length = 468
Score = 245 bits (626), Expect = 6e-71
Identities = 99/420 (23%), Positives = 167/420 (39%), Gaps = 44/420 (10%)
Query: 1241 MIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEA 1300
+++ RK ++G+ L GGN VGI+V V S GL GD+IL N D EEA
Sbjct: 4 LVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEA 63
Query: 1301 AYELAKPADKVTVLAQYS---VERYNEVKDKPGDSFYMRALFSRTGDLGDALQLRFHKDD 1357
L V V+ GDSFY+R F + L F+K +
Sbjct: 64 VLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKE--SPYGLSFNKGE 121
Query: 1358 ILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYKVEEELLLRRSLGDLESDARRAT 1417
+ V +T++NG G W A + + + GIIP+K + E+ ++ +L R
Sbjct: 122 VFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGDRADF 181
Query: 1418 RRSFFRRKKHQRSDSKELASFSNINLGWYSDSGTLNEDSVSLASYQRVIRLNSEPVLRPV 1477
R R S NL + + +Y+RV+ LRPV
Sbjct: 182 WRFRGLRS-------------SKRNLRKSREDLSAQPVQTKFPAYERVVLR-EAGFLRPV 227
Query: 1478 ILVGALSDTVTDKLLQDFPDKFVRCAPEIMHCPQAAMEKGLADNLFVDYRKKGAYFECTS 1537
+ G ++D +KL ++ PD + E G
Sbjct: 228 TIFGPIADVAREKLAREEPDIYQIAKSEPRDAGTDQRSSG-----------------IIR 270
Query: 1538 VAAVKDACDKNNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSS 1597
+ +K D++ H +LDV+ V+RL+ YPIV+ + S + +K ++
Sbjct: 271 LHTIKQIIDQDK-HALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRM-------R 322
Query: 1598 LDKVTAKAAKEMYEHGLKIECEHKHYISAVIPAGVNIAYMCTQIQTAVELEQSKTLWVPS 1657
L + K+A+++YE K+ + H + I ++ A++ +Q++ +WV
Sbjct: 323 LCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVSE 382
Score = 63.0 bits (152), Expect = 5e-10
Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
Query: 1129 LRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATY 1188
++ V K + +G+++ + G+FV+ V E S A++ GL+ GDQ+L V ++ +
Sbjct: 2 MKLVKFRKG-DSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIR 60
Query: 1189 QLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGEPR 1238
+ A L + + K S ++ + E
Sbjct: 61 EEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKE 110
Score = 40.3 bits (93), Expect = 0.005
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 202 GLTL----ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP 257
GL L + G+++ + S AAKEG L GD++L +NN + E + L D P
Sbjct: 14 GLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNI-IREEAVLFLLDLP 71
Query: 258 DVLTITTLKPTSLGEHSPRVHRKSVNSSTQTM 289
+T L + V +S
Sbjct: 72 KGEEVTILAQKKKDVYRRIVESDVGDSFYIRT 103
Score = 40.3 bits (93), Expect = 0.005
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 826 GLTL----ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP 881
GL L + G+++ + S AAKEG L GD++L +NN + E + L D P
Sbjct: 14 GLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNI-IREEAVLFLLDLP 71
Query: 882 DVLTITTLKPTSLGEHSPRVHRKSVNSSTQTM 913
+T L + V +S
Sbjct: 72 KGEEVTILAQKKKDVYRRIVESDVGDSFYIRT 103
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain; 2.80A
{Homo sapiens}
Length = 308
Score = 201 bits (511), Expect = 1e-57
Identities = 69/337 (20%), Positives = 132/337 (39%), Gaps = 48/337 (14%)
Query: 1330 GDSFYMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVP------GHWRAWLVDADGF 1383
GDSFY+R F L F + D+ +V +T+ G GHW A + D
Sbjct: 2 GDSFYIRTHFELEPSPPSGLG--FTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLR 59
Query: 1384 RQQCGIIPSKYKVEEELLLRRSLGDLESDARRAT---RRSFFRRKKHQRSDSKELASFSN 1440
Q+ GIIP++ + E+ L + + + R+ F R + R +K+ S
Sbjct: 60 EQERGIIPNQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAKKTTQRSR 119
Query: 1441 INLGWYSDSGTLNEDSVSLASYQRVIRLNSEPVLRPVILVGALSDTVTDKLLQDFPDKFV 1500
+L Y+RV+ + RPV+++G ++D KL + PD+F
Sbjct: 120 EDLSAL-------TRQGRYPPYERVVLREASFK-RPVVILGPVADIAMQKLTAEMPDQFE 171
Query: 1501 RCAPEIMHCPQAAMEKGLADNLFVDYRKKGAYFECTSVAAVKDACDKNNAHVILDVSLAG 1560
+ + + + V+ +K+ H +LDV+ +
Sbjct: 172 IAETV---------------------SRTDSPSKIIKLDTVRVIAEKDK-HALLDVTPSA 209
Query: 1561 VERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLKIECEH 1620
+ERL+ YPIV+ +S +K +++ L + ++ + +Y K+
Sbjct: 210 IERLNYVQYYPIVVFFIPESRPALKALRQ-------WLAPASRRSTRRLYAQAQKLRKHS 262
Query: 1621 KHYISAVIPAGVNIAYMCTQIQTAVELEQSKTLWVPS 1657
H +A IP +++ + +Q++ +W
Sbjct: 263 SHLFTATIPLNGTSDTWYQELKAIIREQQTRPIWTAE 299
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 178 bits (454), Expect = 5e-50
Identities = 82/345 (23%), Positives = 134/345 (38%), Gaps = 75/345 (21%)
Query: 1333 FYMRALFSRTGDLGDAL---QLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGI 1389
FY+RALF L F D+L+V + G W+A V +D G
Sbjct: 2 FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDA---GDEEWWQARRVHSDSETDDIGF 58
Query: 1390 IPSKYKVEEELLLRRSLGDLESDARRATRRSFFRRKKHQRSDSKELASFSNINLGWYSDS 1449
IPSK +VE RR + R K S
Sbjct: 59 IPSKRRVE--------------------RREWSRLKAKDWGSSS---------------- 82
Query: 1450 GTLNEDSVSLASYQRVIRLNSEPVLRPVILVGALSDTVTDKLLQDFPDKFVRCAPEIMHC 1509
S+ SY+ V ++ RP+I++G D D LL +FPDKF C P
Sbjct: 83 -GSQGREDSVLSYETVTQMEVHYA-RPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRP 140
Query: 1510 P---------------QAAMEKGLADNLFVDYRKKGAYFECTSVAAVKDACDKNNAHVIL 1554
+ MEK + + F++ + ++ TSV +V++ ++ H IL
Sbjct: 141 KREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGK-HCIL 199
Query: 1555 DVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGL 1614
DVS V RL H++PI + I+ +S ++ + EI T + A++ ++
Sbjct: 200 DVSANAVRRLQAAHLHPIAIFIRPRS---LENVLEINKRI-------TEEQARKAFDRAT 249
Query: 1615 KIECEHKHYISAVIPAGVN--IAYMCTQIQTAVELEQSKTLWVPS 1657
K+E E SA++ + +++ +E +WVP+
Sbjct: 250 KLEQEFTECFSAIV---EGDSFEEIYHKVKRVIEDLSGPYIWVPA 291
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 134 bits (338), Expect = 1e-34
Identities = 90/349 (25%), Positives = 146/349 (41%), Gaps = 86/349 (24%)
Query: 1330 GDSFYMRALFSRTGDLGDAL---QLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQ 1386
S Y+RALF + D L L F DIL+V N W+A V D +Q
Sbjct: 3 KRSLYVRALFDYDPNRDDGLPSRGLPFKHGDILHVTNA---SDDEWWQARRVLGDNEDEQ 59
Query: 1387 CGIIPSKYKVEEELLLRRSLGDLESDARRATRRSFFRRKKHQRSDSKELASFSNINLGWY 1446
GI+PSK RR R+ R + +
Sbjct: 60 IGIVPSK--------------------RRWERKMRARDRSVK------------------ 81
Query: 1447 SDSGTLNEDSVSLASYQRVIRLNSEPVLRPVILVGALSDTVTDKLLQDFPDKFVRCAPEI 1506
++ SY+ V RL+ RPVI++G L D + D L+ ++PDKF C P
Sbjct: 82 --------SEENVLSYEAVQRLSINY-TRPVIILGPLKDRINDDLISEYPDKFGSCVPHT 132
Query: 1507 MHCP---------------QAAMEKGLADNLFVDYRK-KGAYFECTSVAAVKDACDKNNA 1550
+ ME+ + ++LF++ + + TSVA+V++ +K
Sbjct: 133 TRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYG-TSVASVREVAEKGK- 190
Query: 1551 HVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMY 1610
H ILDVS ++RL +YP+ + IK KS + E+ ++T + AK+ Y
Sbjct: 191 HCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEM----------NRRMTEEQAKKTY 240
Query: 1611 EHGLKIECEHKHYISAVIPAGVN--IAYMCTQIQTAVELEQSKTLWVPS 1657
E +K+E E Y + V+ I + +++++ + + T+WVPS
Sbjct: 241 ERAIKMEQEFGEYFTGVV---QGDTIEEIYSKVKSMIWSQSGPTIWVPS 286
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 124 bits (314), Expect = 1e-33
Identities = 45/103 (43%), Positives = 62/103 (60%)
Query: 1121 SHKPHPGELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCG 1180
+P+ E R V + K EPLGI I + GG++VS V+ S+A Q GL+ GDQLLE G
Sbjct: 12 KDRPYVEEPRHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNG 71
Query: 1181 INMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSS 1223
IN+RSAT Q A ++ Q ++IT+L QY+P + S S
Sbjct: 72 INLRSATEQQARLIIGQQCDTITILAQYNPHVHQLSSHSRSGP 114
Score = 100 bits (251), Expect = 4e-25
Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 1218 GSGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG 1277
GS SS EPR + ++ + LGIS+V G GIYV V GS+ + AG
Sbjct: 1 GSSGSSGGERRKDRPYVEEPRHVKVQ-KGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAG 59
Query: 1278 LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKD-KPGDS 1332
L GD++LE+NG +LR+AT ++A + + D +T+LAQY+ + + G S
Sbjct: 60 LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHVHQLSSHSRSGPS 115
Score = 49.0 bits (117), Expect = 5e-07
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
+ G+Y+ K++ GS+A + G L GD++L N + + + ++ D +TI
Sbjct: 41 KGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQ-QARLIIGQQCDTITILA- 97
Query: 266 KPTSLGEHSPRVHRKSVNSS 285
+++P VH+ S +S
Sbjct: 98 ------QYNPHVHQLSSHSR 111
Score = 49.0 bits (117), Expect = 5e-07
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
+ G+Y+ K++ GS+A + G L GD++L N + + + ++ D +TI
Sbjct: 41 KGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQ-QARLIIGQQCDTITILA- 97
Query: 890 KPTSLGEHSPRVHRKSVNSS 909
+++P VH+ S +S
Sbjct: 98 ------QYNPHVHQLSSHSR 111
Score = 30.9 bits (70), Expect = 1.3
Identities = 2/51 (3%), Positives = 19/51 (37%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARSLVTTQ 816
+ D ++ N ++ + +++ + + ++ + + ++
Sbjct: 61 EYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHVHQLSSHSR 111
Score = 28.6 bits (64), Expect = 7.0
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKGSVTD 108
+E LG+ +V G IYVS + GS+
Sbjct: 29 SEPLGISIVSGEKGG-------IYVSKVTVGSIAH 56
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 118 bits (297), Expect = 3e-31
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 1119 CCSHKPHPGELRRVHIDKSVEPLGIQIQC-LDSGGVFVSTVSEHSLASQVG-LQVGDQLL 1176
+ P E RR+ I + LG I D G+F+S + A G L+ GDQ+L
Sbjct: 5 FLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQIL 64
Query: 1177 EVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVS 1230
V G+++R+A+++ AA L+ G ++T++ QY P++Y E + + V+
Sbjct: 65 SVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDSSGRIVT 118
Score = 83.2 bits (206), Expect = 5e-19
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 1220 GSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAG- 1277
GS E EPR ++I R + LG ++VGG + GI++ + +G +G
Sbjct: 1 GSPEFLGEE---DIPREPRRIVIH-RGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGE 56
Query: 1278 LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKPGDS 1332
LR GD+IL NG DLR A+ E+AA L VT++AQY E Y+ +
Sbjct: 57 LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVD 111
Score = 51.7 bits (124), Expect = 6e-08
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
G++I I G A G L GD++LS+N + S + L ++ +TI
Sbjct: 37 GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHE-QAAIALKNAGQTVTIIAQ 95
Query: 266 KPTSLGEHSPRVHRKSVNSST 286
E R S S+
Sbjct: 96 YKP---EEYSRFEANSRVDSS 113
Score = 51.7 bits (124), Expect = 6e-08
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
G++I I G A G L GD++LS+N + S + L ++ +TI
Sbjct: 37 GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHE-QAAIALKNAGQTVTIIAQ 95
Query: 890 KPTSLGEHSPRVHRKSVNSST 910
E R S S+
Sbjct: 96 YKP---EEYSRFEANSRVDSS 113
Score = 33.2 bits (76), Expect = 0.19
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+ D I+ VN +D N S ++++G + ++ + +
Sbjct: 58 RKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 98
Score = 30.9 bits (70), Expect = 1.0
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLKK 113
+ LG +VGG D I++S I+ G G+L+K
Sbjct: 24 STGLGFNIVGGEDGE------GIFISFILAGGPADLSGELRK 59
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 115 bits (290), Expect = 2e-30
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 1124 PHPGELRRVHIDKSVEPLGIQIQC-LDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGI 1181
E R++ + K LG I D G+FVS + A G L+ GD++L V G+
Sbjct: 11 GDAREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGV 70
Query: 1182 NMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSA 1224
N+R+AT++ AA+ L++ G S+T++ QY P++Y E SG SS
Sbjct: 71 NLRNATHEQAAAALKRAGQSVTIVAQYRPEEYSRFESSGPSSG 113
Score = 82.0 bits (203), Expect = 1e-18
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 1218 GSGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSA 1276
GS SS + EPR +++ + + LG ++VGG + GI+V + +G +
Sbjct: 1 GSSGSSGRPGGDAR----EPRKIILH-KGSTGLGFNIVGGEDGEGIFVSFILAGGPADLS 55
Query: 1277 G-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKPGDS 1332
G LR GDRIL NG +LR AT E+AA L + VT++AQY E Y+ + G S
Sbjct: 56 GELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYSRFE-SSGPS 111
Score = 51.2 bits (123), Expect = 8e-08
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 263
G+++ I G A G L GDR+LS+N + + + A L + +TI
Sbjct: 38 GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHE-QAAAALKRAGQSVTIV 94
Score = 51.2 bits (123), Expect = 8e-08
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887
G+++ I G A G L GDR+LS+N + + + A L + +TI
Sbjct: 38 GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHE-QAAAALKRAGQSVTIV 94
Score = 34.3 bits (79), Expect = 0.074
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+ D I+ VN ++ N + ++ +G S +V + R
Sbjct: 59 RRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRP 99
Score = 30.8 bits (70), Expect = 1.1
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLKK 113
+ LG +VGG D I+VS I+ G G+L++
Sbjct: 25 STGLGFNIVGGEDGE------GIFVSFILAGGPADLSGELRR 60
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing,
cell junction, cell membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 111 bits (280), Expect = 4e-29
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 1121 SHKPHPGELRRVHIDKSVEPLGIQIQC-LDSGGVFVSTVSEHSLASQVG-LQVGDQLLEV 1178
+ P E RR+ I + LG I G+F+S + A G L+ GDQ+L V
Sbjct: 4 GEEDIPREPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSV 63
Query: 1179 CGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEG 1218
G+++R+A+++ AA L+ G ++T++ QY P++Y E
Sbjct: 64 NGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEA 103
Score = 85.8 bits (213), Expect = 5e-20
Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 1235 GEPRFLMIETRKCSNLGISLVGGNA-VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 1292
EPR ++I R + LG ++VGG GI++ + +G +G LR GD+IL NG DL
Sbjct: 10 REPRRIVIH-RGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 68
Query: 1293 RAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDK 1328
R A+ E+AA L VT++AQY E Y+ + K
Sbjct: 69 RNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAK 104
Score = 50.0 bits (120), Expect = 2e-07
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 263
G++I I G A G L GD++LS+N + S + L ++ +TI
Sbjct: 35 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHE-QAAIALKNAGQTVTII 90
Score = 50.0 bits (120), Expect = 2e-07
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887
G++I I G A G L GD++LS+N + S + L ++ +TI
Sbjct: 35 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHE-QAAIALKNAGQTVTII 90
Score = 34.2 bits (79), Expect = 0.059
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+ D I+ VN +D N S ++++G + ++ + +
Sbjct: 55 RKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 95
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 112 bits (282), Expect = 4e-29
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 1214 HELEGSGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLG 1273
H S EN G P +++ RK ++G+ L GGN VGI+V V S
Sbjct: 5 HHHHHHSSGGTENLYFQGHMILRPSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPA 64
Query: 1274 YSAGLRTGDRILEYNGTDLRAATAEEAAYEL--AKPADKVTVLAQYSVERYNEVKD 1327
GL GD+IL N D EEA L ++VT+LAQ + Y + +
Sbjct: 65 AKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVE 120
Score = 87.9 bits (218), Expect = 2e-20
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 1121 SHKPHPGELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCG 1180
H ++ V K + +G+++ + G+FV+ V E S A++ GL+ GDQ+L V
Sbjct: 22 GHMILRPSMKLVKFRKG-DSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNN 80
Query: 1181 INMRSATYQLAASVLRQC--GNSITMLVQYSPDKYHELEGSG 1220
++ + + A L G +T+L Q D Y + S
Sbjct: 81 VDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESD 122
Score = 48.7 bits (116), Expect = 9e-07
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Query: 792 RSSGTSALMVIRRRRVGARSLVTTQLQLNNSYDHGLTL----ESGLYICKISPGSLAAKE 847
SSG + + + + S+ + + +S GL L + G+++ + S AAKE
Sbjct: 10 HSSGGTENLYFQGHMILRPSMKLVKFRKGDSV--GLRLAGGNDVGIFVAGVLEDSPAAKE 67
Query: 848 GSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKPTSLGEHSPRVHRKSVN 907
G L GD++L +NN + E + L D P +T L + V+R+ V
Sbjct: 68 G-LEEGDQILRVNNVDFTNI-IREEAVLFLLDLPKGEEVTILA-----QKKKDVYRRIVE 120
Query: 908 S 908
S
Sbjct: 121 S 121
Score = 46.3 bits (110), Expect = 6e-06
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
+ G+++ + S AAKEG L GD++L +NN + E + L D P +T L
Sbjct: 50 DVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNI-IREEAVLFLLDLPKGEEVTIL 107
Query: 266 KPTSLGEHSPRVHRKSVNS 284
+ V+R+ V S
Sbjct: 108 A-----QKKKDVYRRIVES 121
Score = 36.3 bits (84), Expect = 0.016
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 43 SHNYSHDSAIDTDLQEWDTEVL---DMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVS 99
SH++ H S+ T+ + ++ M L +++GL L GG ND I+V+
Sbjct: 4 SHHHHHHSSGGTENLYFQGHMILRPSMKLVKFRKGDSVGLRLAGG-------NDVGIFVA 56
Query: 100 NIVKGSV 106
+++ S
Sbjct: 57 GVLEDSP 63
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 114 bits (288), Expect = 5e-29
Identities = 45/208 (21%), Positives = 76/208 (36%), Gaps = 27/208 (12%)
Query: 1124 PHPGELRRVHIDKS-VEPLGIQIQ--CLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVC 1179
V + K LG+ + G VS + + +A++ L VGD + V
Sbjct: 3 GSFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVN 62
Query: 1180 GINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGEPRF 1239
GIN+ + S+L+ G + + V+Y S R
Sbjct: 63 GINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSI---------------QGSSVMFRT 107
Query: 1240 LMIETRKCSN-LGISLVGG------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTD 1291
+ + K N G + GG + + + V+ G G ++ GDR+L +G
Sbjct: 108 VEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIR 167
Query: 1292 LRAATAEEAAYELAKPADKVTVLAQYSV 1319
L T EA L + + T+L +Y V
Sbjct: 168 LLGTTHAEAMSILKQCGQEATLLIEYDV 195
Score = 77.5 bits (191), Expect = 5e-16
Identities = 26/139 (18%), Positives = 54/139 (38%), Gaps = 18/139 (12%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARS------LVTTQLQL 819
V D I VN ++ + ++ +++ G ++ + T ++ L
Sbjct: 53 DVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTL 112
Query: 820 N-NSYDHGLTLE----------SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 868
+ G + + I + PG A +EG++ GDR+LS++ + G +
Sbjct: 113 HKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTT 172
Query: 869 SAREGMALLSDSPDVLTIT 887
A E M++L T+
Sbjct: 173 HA-EAMSILKQCGQEATLL 190
Score = 75.5 bits (186), Expect = 2e-15
Identities = 34/195 (17%), Positives = 68/195 (34%), Gaps = 23/195 (11%)
Query: 72 SPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLKKKEEVARI-KKQCEDMN 128
LGL + GG D D VSN+ +G + +L + + +
Sbjct: 16 KEGTTLGLTVSGGID-----KDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFR 70
Query: 129 QEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVTN 188
++ +L LK + + + + + + + E + +
Sbjct: 71 HDEIISL-----LKNVGERVVLE--VEYELPPVSIQGSSVMFRTVEVTLHKEGNTF---- 119
Query: 189 YLDGLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSARE 248
G + + I + PG A +EG++ GDR+LS++ + G + A E
Sbjct: 120 ---GFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHA-E 175
Query: 249 GMALLSDSPDVLTIT 263
M++L T+
Sbjct: 176 AMSILKQCGQEATLL 190
Score = 66.7 bits (163), Expect = 2e-12
Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 3/114 (2%)
Query: 1236 EPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 1292
+ + ++ + LG+++ GG V +++ G + + L GD I NG +L
Sbjct: 7 GSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINL 66
Query: 1293 RAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKPGDSFYMRALFSRTGDLG 1346
+E L ++V + +Y + + L G
Sbjct: 67 AKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGNTFG 120
Score = 57.1 bits (138), Expect = 5e-09
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 261
G+ + + + G +AA+ L VGD + ++N + E ++LL + + +
Sbjct: 28 GIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHD-EIISLLKNVGERVV 86
Query: 262 ITTLKPTSLGEHSPRVHRK 280
+
Sbjct: 87 LEVEYELPPVSIQGSSVMF 105
Score = 57.1 bits (138), Expect = 5e-09
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 885
G+ + + + G +AA+ L VGD + ++N + E ++LL + + +
Sbjct: 28 GIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHD-EIISLLKNVGERVV 86
Query: 886 ITTLKPTSLGEHSPRVHRK 904
+
Sbjct: 87 LEVEYELPPVSIQGSSVMF 105
Score = 31.6 bits (72), Expect = 1.6
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
K D ++ V+ + + + ++ G A ++I
Sbjct: 155 KPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDV 195
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB:
3zrt_A 2ka9_A
Length = 196
Score = 113 bits (285), Expect = 1e-28
Identities = 42/205 (20%), Positives = 71/205 (34%), Gaps = 38/205 (18%)
Query: 1126 PGELRRVHIDKSVEPLGIQI-------QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLE 1177
E + +++ LG I D +F++ + A+Q G L+V D +L
Sbjct: 3 SMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILF 62
Query: 1178 VCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGEP 1237
V +++R T+ A L++ G+ + + V
Sbjct: 63 VNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAE----------------------K 100
Query: 1238 RFLMIETRKCSNLGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 1289
+ + LG S+ GG IYV + G + G L+ GD+IL N
Sbjct: 101 VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 160
Query: 1290 TDLRAATAEEAAYELAKPADKVTVL 1314
L E+A L D V +
Sbjct: 161 VGLEDVMHEDAVAALKNTYDVVYLK 185
Score = 98.7 bits (246), Expect = 2e-23
Identities = 33/139 (23%), Positives = 72/139 (51%), Gaps = 13/139 (9%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARSLVTTQLQLNNSYDH 825
+VND I+ VN +D V+ +E ++ +G+ + + RR+ A ++ +L
Sbjct: 55 RVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLI-KGPKGL 113
Query: 826 GLTL-----------ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGM 874
G ++ ++ +Y+ KI G A K+G L +GD++L++N+ ++ + + +
Sbjct: 114 GFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHE-DAV 172
Query: 875 ALLSDSPDVLTITTLKPTS 893
A L ++ DV+ + KP++
Sbjct: 173 AALKNTYDVVYLKVAKPSN 191
Score = 91.0 bits (226), Expect = 9e-21
Identities = 40/214 (18%), Positives = 89/214 (41%), Gaps = 29/214 (13%)
Query: 60 DTEVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLKKKEEV 117
E ++ L N LG + GG D+P +D SI+++ I+ G DG+L+ + +
Sbjct: 3 SMEYEEITLER--GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSI 60
Query: 118 ARI-KKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDA 176
+ + ++ A+++ V ++ A
Sbjct: 61 LFVNEVDVREVTHS-------------AAVEALKE---------AGSIVRLYVMRRKPPA 98
Query: 177 VKEINTAMAVTNYLDGLQLNNSYDH-GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSI 235
K + + G + + + ++ +Y+ KI G A K+G L +GD++L++
Sbjct: 99 EKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 158
Query: 236 NNRTVDGLSSAREGMALLSDSPDVLTITTLKPTS 269
N+ ++ + + +A L ++ DV+ + KP++
Sbjct: 159 NSVGLEDVMHE-DAVAALKNTYDVVYLKVAKPSN 191
Score = 63.6 bits (155), Expect = 3e-11
Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 1122 HKPHPGELRRVHIDKSVEPLGIQI-------QCLDSGGVFVSTVSEHSLASQVG-LQVGD 1173
KP ++ + + K + LG I ++V+ + E A + G LQ+GD
Sbjct: 94 RKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGD 153
Query: 1174 QLLEVCGINMRSATYQLAASVLRQCGNSITMLVQ 1207
++L V + + ++ A + L+ + + + V
Sbjct: 154 KILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVA 187
Score = 54.8 bits (132), Expect = 3e-08
Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
+ ++I KI PG AA++G L V D +L +N V ++ + + L ++ ++ + +
Sbjct: 34 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS-AAVEALKEAGSIVRLYVM 92
Query: 266 KPTSLGEHSPRVHRKSVNSS 285
+ E +
Sbjct: 93 RRKPPAEKVMEIKLIKGPKG 112
Score = 54.8 bits (132), Expect = 3e-08
Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
+ ++I KI PG AA++G L V D +L +N V ++ + + L ++ ++ + +
Sbjct: 34 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS-AAVEALKEAGSIVRLYVM 92
Query: 890 KPTSLGEHSPRVHRKSVNSS 909
+ E +
Sbjct: 93 RRKPPAEKVMEIKLIKGPKG 112
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 109 bits (274), Expect = 4e-27
Identities = 40/202 (19%), Positives = 77/202 (38%), Gaps = 28/202 (13%)
Query: 1126 PGELRRVHIDKS-VEPLGIQIQ------CLDSGGVFVSTVSEHSLASQVG-LQVGDQLLE 1177
E V + V GIQ+Q S +S + S A + G LQ+GD+++
Sbjct: 4 HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMA 63
Query: 1178 VCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGEP 1237
+ GI +T++ A +LR + + ++ D + S + +
Sbjct: 64 INGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVI-PSSGTFHVKLPKKHSVE-- 120
Query: 1238 RFLMIETRKCSNLGISLVGG----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 1292
LGI++ + + ++ GS+ + G L GD++L + L
Sbjct: 121 ------------LGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRL 168
Query: 1293 RAATAEEAAYELAKPADKVTVL 1314
+ + E+A L + D V +
Sbjct: 169 DSCSMEDAVQILQQCEDLVKLK 190
Score = 94.5 bits (235), Expect = 6e-22
Identities = 29/140 (20%), Positives = 65/140 (46%), Gaps = 15/140 (10%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARSLV------TTQLQL 819
++ D ++ +N + + + + +R S ++ + + A S++ +L
Sbjct: 56 QIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPK 115
Query: 820 NNSYDHGLTLESG--------LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAR 871
+S + G+T+ S L I I GS+A + G+L +GD++L+I+N +D S
Sbjct: 116 KHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSME- 174
Query: 872 EGMALLSDSPDVLTITTLKP 891
+ + +L D++ + K
Sbjct: 175 DAVQILQQCEDLVKLKIRKD 194
Score = 88.7 bits (220), Expect = 7e-20
Identities = 41/200 (20%), Positives = 72/200 (36%), Gaps = 24/200 (12%)
Query: 72 SPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLKKKEEVARIKKQ-CEDMN 128
P G++L G + +S I S G L+ + V I ED
Sbjct: 15 DPVTGFGIQLQGSVFATETLSSP-PLISYIEADSPAERCGVLQIGDRVMAINGIPTEDST 73
Query: 129 QEK-NTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVT 187
E+ N LR+ ++I E + + + H K+ +
Sbjct: 74 FEEANQLLRD---------SSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHS------ 118
Query: 188 NYLDGLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAR 247
L + S L I I GS+A + G+L +GD++L+I+N +D S
Sbjct: 119 ---VELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSME- 174
Query: 248 EGMALLSDSPDVLTITTLKP 267
+ + +L D++ + K
Sbjct: 175 DAVQILQQCEDLVKLKIRKD 194
Score = 69.0 bits (169), Expect = 4e-13
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 1116 PDYCCSHKPHPGELRRVHIDKSVEPLGIQIQCLDSG----GVFVSTVSEHSLASQVG-LQ 1170
D S P G K LGI I S + +S + + S+A + G L+
Sbjct: 96 FDVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLE 155
Query: 1171 VGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211
+GD+LL + I + S + + A +L+QC + + + ++ D
Sbjct: 156 LGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDED 196
Score = 57.1 bits (138), Expect = 4e-09
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 822 SYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP 881
S TL S I I S A + G L +GDRV++IN + + E LL DS
Sbjct: 27 SVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFE-EANQLLRDSS 85
Query: 882 DVLTITTLKPTSLGEHSPRVHR 903
+T + E
Sbjct: 86 ITSKVTLEIEFDVAESVIPSSG 107
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding
protein signaling protein; 1.56A {Homo sapiens} SCOP:
b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A
1ybo_A
Length = 166
Score = 99.1 bits (247), Expect = 7e-24
Identities = 48/191 (25%), Positives = 74/191 (38%), Gaps = 33/191 (17%)
Query: 1126 PGELRRVHIDK-SVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMR 1184
+ R V + K +G++++ +D G+FV V +S AS VGL+ GDQ+L++ G N
Sbjct: 2 AMDPREVILCKDQDGKIGLRLKSID-NGIFVQLVQANSPASLVGLRFGDQVLQINGENCA 60
Query: 1185 SATYQLAASVLRQC-GNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGEPRFLMIE 1243
+ A VL+Q G ITM ++ P + I
Sbjct: 61 GWSSDKAHKVLKQAFGEKITMTIRDRPFERT---------------------------IT 93
Query: 1244 TRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYE 1303
K S VG + S+ S GL T I E NG ++ + A
Sbjct: 94 MHKDS---TGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADI 150
Query: 1304 LAKPADKVTVL 1314
L+ VT+
Sbjct: 151 LSTSGTVVTIT 161
Score = 78.7 bits (194), Expect = 8e-17
Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 23/174 (13%)
Query: 1233 GSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 1292
G+ +PR +++ + +G+ L + GI+V VQ+ S GLR GD++L+ NG +
Sbjct: 1 GAMDPREVILCKDQDGKIGLRLKSIDN-GIFVQLVQANSPASLVGLRFGDQVLQINGENC 59
Query: 1293 RAATAEEAAYELAKPAD---KVTVLAQYSVERYNEVKDKPGDSFYMRAL----------- 1338
++++A L + +T+ + KD G ++
Sbjct: 60 AGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSS 119
Query: 1339 FSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPS 1392
+R G L + +I ++ G+ A ++ G I+P+
Sbjct: 120 AARNGLL--------TEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA 165
Score = 57.9 bits (140), Expect = 1e-09
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVR-SSGTSALMVIRRRRVGARSLVTTQLQLNNSYD 824
+ D ++++N +C+ S + ++ + G M IR R + +++
Sbjct: 46 RFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERT----ITMHKDSTGH 101
Query: 825 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 884
G ++G I I S AA+ G L + IN + V GL + + +LS S V+
Sbjct: 102 VGFIFKNG-KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDS-QIADILSTSGTVV 158
Query: 885 TITTLKP 891
TIT +
Sbjct: 159 TITIMPA 165
Score = 51.8 bits (124), Expect = 2e-07
Identities = 12/81 (14%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 1129 LRRVHIDKSVEPLGIQIQCL--DSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSA 1186
+R ++++ + ++++ + S A++ GL + E+ G N+
Sbjct: 83 IRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGL 142
Query: 1187 TYQLAASVLRQCGNSITMLVQ 1207
A +L G +T+ +
Sbjct: 143 KDSQIADILSTSGTVVTITIM 163
Score = 46.0 bits (109), Expect = 2e-05
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 202 GLTL---ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD 258
GL L ++G+++ + S A+ G L GD+VL IN G SS + L +
Sbjct: 19 GLRLKSIDNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGE 77
Query: 259 VLTIT 263
+T+T
Sbjct: 78 KITMT 82
Score = 46.0 bits (109), Expect = 2e-05
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 826 GLTL---ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD 882
GL L ++G+++ + S A+ G L GD+VL IN G SS + L +
Sbjct: 19 GLRLKSIDNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGE 77
Query: 883 VLTIT 887
+T+T
Sbjct: 78 KITMT 82
Score = 41.4 bits (97), Expect = 6e-04
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 11/104 (10%)
Query: 173 HEDAVKEINTA------MAVTNYLDGLQLNNSYDHGLTL---ESGLYICKISPGSLAAKE 223
+ A K + A M + + + D + I I S AA+
Sbjct: 64 SDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARN 123
Query: 224 GSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 267
G L + IN + V GL + + +LS S V+TIT +
Sbjct: 124 G-LLTEHNICEINGQNVIGLKDS-QIADILSTSGTVVTITIMPA 165
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 93.2 bits (232), Expect = 2e-22
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 1124 PHPGELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGIN 1182
G + V + LG I + GV V T+ LA + G LQ GD +L++ G N
Sbjct: 11 VCWGHVEEVELINDGSGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTN 70
Query: 1183 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSS 1222
++ T + A VLR CGNS+ MLV P + SS
Sbjct: 71 VQGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSGPSS 110
Score = 75.5 bits (186), Expect = 2e-16
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 8/115 (6%)
Query: 1218 GSGSSSAENESVSGRGSGEPRFLMIETRKCSN-LGISLVGGNAVGIYVHSVQSGSLGYSA 1276
GS SS G +E + LG +VGG G+ V ++ G L
Sbjct: 1 GSSGSSGPETVCWGH------VEEVELINDGSGLGFGIVGGKTSGVVVRTIVPGGLADRD 54
Query: 1277 G-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKPG 1330
G L+TGD IL+ GT+++ T+E+ A L + V +L V P
Sbjct: 55 GRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSGPS 109
Score = 54.3 bits (131), Expect = 7e-09
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
SG+ + I PG LA ++G L GD +L I V G++S + +L + + + +
Sbjct: 37 TSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSE-QVAQVLRNCGNSVRMLVA 95
Query: 266 KP 267
+
Sbjct: 96 RD 97
Score = 54.3 bits (131), Expect = 7e-09
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
SG+ + I PG LA ++G L GD +L I V G++S + +L + + + +
Sbjct: 37 TSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSE-QVAQVLRNCGNSVRMLVA 95
Query: 890 KP 891
+
Sbjct: 96 RD 97
Score = 40.0 bits (94), Expect = 6e-04
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARSLVTT 815
+ D I+++ + ++ V + +R+ G S M++ R G S+ +
Sbjct: 58 QTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSG 107
Score = 32.3 bits (74), Expect = 0.29
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 9/38 (23%)
Query: 77 LGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
LG +VGG+ S + V IV G + DG+L+
Sbjct: 28 LGFGIVGGK-------TSGVVVRTIVPGGLADRDGRLQ 58
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 95.3 bits (237), Expect = 4e-22
Identities = 27/199 (13%), Positives = 59/199 (29%), Gaps = 33/199 (16%)
Query: 1126 PGELRRVHIDKSVEPLGIQI----QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCG 1180
P + + + +P+G+ + + G ++ V + L++ D + ++ G
Sbjct: 16 PNKKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDING 75
Query: 1181 INMRSATYQ--LAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGEPR 1238
+ + + L + D E
Sbjct: 76 TPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPP----------------------ELE 113
Query: 1239 FLMIETRKCSN--LGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAA 1295
++ K + LG+SL G + + G L+ GD I ++NG L
Sbjct: 114 KFNVDLMKKAGKELGLSLSPNEI-GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGL 172
Query: 1296 TAEEAAYELAKPADKVTVL 1314
+ KV++
Sbjct: 173 PFQVCYALFKGANGKVSME 191
Score = 89.2 bits (221), Expect = 5e-20
Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 9/139 (6%)
Query: 766 KVNDCIVRVN--NLDCSNVSKRMVLETVRSSGTSAL-MVIRRRRVGARSLVTTQLQLNNS 822
K+ D I +N + +++ V + ++ A+ + + R L
Sbjct: 65 KIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAG 124
Query: 823 YDHGLTL---ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSD 879
+ GL+L E G I + G + L GD + N ++GL AL
Sbjct: 125 KELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQ-VCYALFKG 183
Query: 880 SPDV--LTITTLKPTSLGE 896
+ + +T KPT E
Sbjct: 184 ANGKVSMEVTRPKPTLRTE 202
Score = 87.3 bits (216), Expect = 2e-19
Identities = 32/206 (15%), Positives = 63/206 (30%), Gaps = 38/206 (18%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLKKKEEVARIKKQCEDMNQEK 131
+ +G+ + GG+++ + ++++ D +LK + + I ++
Sbjct: 28 KKPMGVIVCGGKNNHV---TTGCVITHVYPEGQVAADKRLKIFDHICDING--TPIHVGS 82
Query: 132 NTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVTNYLD 191
T L+ + A + + V
Sbjct: 83 MTTLKVHQLFHT-----------TYEKAVTLTVFRADPPELEKFNVD------------- 118
Query: 192 GLQLNNSYDHGLTL---ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSARE 248
L + GL+L E G I + G + L GD + N ++GL
Sbjct: 119 -LMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQ-V 176
Query: 249 GMALLSDSPDV--LTITTLKPTSLGE 272
AL + + +T KPT E
Sbjct: 177 CYALFKGANGKVSMEVTRPKPTLRTE 202
Score = 67.6 bits (165), Expect = 1e-12
Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 3/102 (2%)
Query: 1107 LRQNKRNSLPDYCCSHKPHPGELRRVHIDK-SVEPLGIQIQCLDSGGVFVSTVSEHSLAS 1165
++ P E V + K + + LG+ + + G ++ + +
Sbjct: 92 FHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNEIG-CTIADLIQGQYPE 150
Query: 1166 QVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLV 1206
LQ GD + + G + +Q+ ++ + ++M V
Sbjct: 151 IDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEV 192
Score = 48.3 bits (115), Expect = 5e-06
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Query: 829 LESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS-SAREGMALLSDSPDVLTIT 887
+ +G I + P A + L + D + IN + S + + L + +
Sbjct: 43 VTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTL 102
Query: 888 TLKPTSLGEHSPR 900
T+ E
Sbjct: 103 TVFRADPPELEKF 115
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 89.7 bits (223), Expect = 1e-21
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 1124 PHPGELRRVHIDKSVEP--LGIQIQC-LDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCG 1180
P P EL +V + K G + L GV+V + GL+ D+LL+V
Sbjct: 2 PTPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNH 61
Query: 1181 INMRSATYQLAASVLRQCGNSITMLVQYSP 1210
+ R L ++ + GN + +++ +P
Sbjct: 62 VRTRDFDCCLVVPLIAESGNKLDLVISRNP 91
Score = 64.3 bits (157), Expect = 1e-12
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 1250 LGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPA 1308
G S+ G G+YV +++ G GL+ DR+L+ N R +A+
Sbjct: 21 FGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESG 80
Query: 1309 DKVTVLAQYS 1318
+K+ ++ +
Sbjct: 81 NKLDLVISRN 90
Score = 50.0 bits (120), Expect = 1e-07
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 201 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 260
LE G+Y+ I P G L DR+L +N+ + L+++S + L
Sbjct: 26 ADGLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCC-LVVPLIAESGNKL 83
Query: 261 TIT 263
+
Sbjct: 84 DLV 86
Score = 50.0 bits (120), Expect = 1e-07
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 825 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 884
LE G+Y+ I P G L DR+L +N+ + L+++S + L
Sbjct: 26 ADGLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCC-LVVPLIAESGNKL 83
Query: 885 TIT 887
+
Sbjct: 84 DLV 86
Score = 36.6 bits (85), Expect = 0.007
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRR 805
K D +++VN++ + +V+ + SG +VI R
Sbjct: 51 KPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN 90
Score = 30.4 bits (69), Expect = 1.0
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 7/52 (13%)
Query: 62 EVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSVTD-GKLK 112
E+ + L S E G + G + +YV NI D G LK
Sbjct: 6 ELHKVTLYKDSGMEDFGFSVADGLLEK------GVYVKNIRPAGPGDLGGLK 51
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 97.2 bits (241), Expect = 1e-21
Identities = 52/392 (13%), Positives = 108/392 (27%), Gaps = 81/392 (20%)
Query: 1282 DRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKPGDSFYMRALFSR 1341
D LE + +R +A +L K K +F +R S
Sbjct: 7 DVSLEEDREAVRREAERQAQAQLEKAKTK-------------------PVAFAVRTNVSY 47
Query: 1342 TGDLGD-----ALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYKV 1396
+ D + + F D L+V N W W+ + G IPS K+
Sbjct: 48 SAAHEDDVPVPGMAISFEAKDFLHVKEKFNN----DW--WIGRLVKEGCEIGFIPSPVKL 101
Query: 1397 EEELLLRRSLGDLESDARRATRRSFFRRKKHQRSDSKELASFSNINLGWYSDSGTLNEDS 1456
E L + R FF++ +H + + +G
Sbjct: 102 ENMRLQHEQRAKEFKLHSKEKRMPFFKKTEHTPPYDVVPSMRPVVLVG------------ 149
Query: 1457 VSLASYQRVIRLNSEPVLRPVILVGALSDTVTDKLLQDFPDKFVRCAP-----EIMHCPQ 1511
P + ++D + L +F + +
Sbjct: 150 -------------------PSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAK 190
Query: 1512 AAMEKGLADNLFVDY--RKKGAYFECTSVAAVKDACDKNNAHVILDV-SLAGVERLHRQH 1568
++ + + ++ + + + + + V+LD ++ +L +
Sbjct: 191 RSVLNNPSKHAIIERSNTRSSLAEVQSEIERIFELARTLQ-LVVLDADTINHPAQLSKTS 249
Query: 1569 VYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLKIECEHKHYISAVI 1628
+ PIV+ +K S K ++ + + R K AK K+ ++
Sbjct: 250 LAPIVVYVKISSPKVLQRLIKSR-------GKSQAKHLNVQMVAADKLAQCPPELFDVIL 302
Query: 1629 PAGVNIAYMCTQIQTAVE---LEQSKTLWVPS 1657
+ C + +E
Sbjct: 303 D-ENQLEDACEHLADYLEAYWKATHPPSSNLP 333
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 89.5 bits (222), Expect = 3e-21
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 1218 GSGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYS 1275
GS SS G + + + I LG S+ G GI++ V+ GSL
Sbjct: 1 GSSGSS----GSPGNRENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAE 56
Query: 1276 AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKPGDS 1332
GL GD+I+E NG D +EA + K + +T+ + R + D+ G S
Sbjct: 57 VGLEIGDQIVEVNGVDFSNLDHKEAV-NVLKSSRSLTISIVAAAGRELFMTDRSGPS 112
Score = 83.3 bits (206), Expect = 4e-19
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 1120 CSHKPHPGELRRVHIDKS-VEPLGIQIQC--LDSGGVFVSTVSEHSLASQVGLQVGDQLL 1176
S + ++V I LG I + G+F+S V SL+++VGL++GDQ++
Sbjct: 7 GSPGNRENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIV 66
Query: 1177 EVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSS 1223
EV G++ + ++ A +VL+ + +V + + + SG SS
Sbjct: 67 EVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGRELFMTDRSGPSS 113
Score = 43.2 bits (102), Expect = 5e-05
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 208 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 267
G++I + PGSL+A+ G L +GD+++ +N L L S ++I
Sbjct: 42 GIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAG 100
Query: 268 TSL 270
L
Sbjct: 101 REL 103
Score = 43.2 bits (102), Expect = 5e-05
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 832 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 891
G++I + PGSL+A+ G L +GD+++ +N L L S ++I
Sbjct: 42 GIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAG 100
Query: 892 TSL 894
L
Sbjct: 101 REL 103
Score = 30.9 bits (70), Expect = 1.2
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 70 NLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSVTD 108
+L + LG + G I++S++ GS++
Sbjct: 22 SLVGSRGLGCSISSGPI-----QKPGIFISHVKPGSLSA 55
Score = 29.8 bits (67), Expect = 3.0
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
++ D IV VN +D SN+ + + ++SS + + ++
Sbjct: 60 EIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAG 100
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 89.0 bits (221), Expect = 4e-21
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 1218 GSGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYS 1275
GS SS NE PR + ++ + LG ++ GG + +GI++ V S +
Sbjct: 1 GSSGSSGNNELTQF----LPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHR 56
Query: 1276 AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQY 1317
AGL+ GD++L N D + +A E+ K A ++++ ++
Sbjct: 57 AGLQEGDQVLAVNDVDFQDIEHSKAV-EILKTAREISMRVRF 97
Score = 75.1 bits (185), Expect = 3e-16
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 1121 SHKPHPGELRRVHIDK-SVEPLGIQIQCLDSGG------VFVSTVSEHSLASQVGLQVGD 1173
+++ R V + K LG I GG +F+S V S A + GLQ GD
Sbjct: 8 NNELTQFLPRIVTLKKPPGAQLGFNI----RGGKASQLGIFISKVIPDSDAHRAGLQEGD 63
Query: 1174 QLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211
Q+L V ++ + + A +L+ I+M V++
Sbjct: 64 QVLAVNDVDFQDIEHSKAVEILKTAR-EISMRVRFFSG 100
Score = 45.4 bits (108), Expect = 8e-06
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 208 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV-LTITTLK 266
G++I K+ P S A + G L GD+VL++N+ + + + +L + ++ + +
Sbjct: 42 GIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDI-EHSKAVEILKTAREISMRVRFFS 99
Query: 267 PTSLG 271
S G
Sbjct: 100 GPSSG 104
Score = 45.4 bits (108), Expect = 8e-06
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 832 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV-LTITTLK 890
G++I K+ P S A + G L GD+VL++N+ + + + +L + ++ + +
Sbjct: 42 GIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDI-EHSKAVEILKTAREISMRVRFFS 99
Query: 891 PTSLG 895
S G
Sbjct: 100 GPSSG 104
Score = 32.7 bits (75), Expect = 0.23
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 72 SPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSVTD 108
P LG + GG+ + I++S ++ S
Sbjct: 24 PPGAQLGFNIRGGKA-----SQLGIFISKVIPDSDAH 55
Score = 31.2 bits (71), Expect = 0.76
Identities = 6/41 (14%), Positives = 20/41 (48%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+ D ++ VN++D ++ +E ++++ ++ V
Sbjct: 60 QEGDQVLAVNDVDFQDIEHSKAVEILKTAREISMRVRFFSG 100
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 82.3 bits (204), Expect = 7e-19
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 1128 ELRRVHIDKSVEPLGIQI--------QCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVC 1179
E + I + LGI I D G+F+S VSE A++ G++VGD+LLEV
Sbjct: 3 EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVN 62
Query: 1180 GINMRSATYQLAASVLRQCGNSITMLVQYSPDK 1212
G+ ++ A + A LR G ++ M V +
Sbjct: 63 GVALQGAEHHEAVEALRGAGTAVQMRVWRERET 95
Score = 63.5 bits (155), Expect = 3e-12
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 1234 SGEPRFLMIETRKCSNLGISLVGG--------NAVGIYVHSVQSGSLGYSAGLRTGDRIL 1285
S E L I R+ LGIS+ GG + GI++ V AG+R GD++L
Sbjct: 1 SMEELTLTIL-RQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLL 59
Query: 1286 EYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEV 1325
E NG L+ A EA L V + V R E
Sbjct: 60 EVNGVALQGAEHHEAVEALRGAGTAVQMR----VWRERET 95
Score = 46.5 bits (111), Expect = 2e-06
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 199 YDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD 258
+ G++I ++S AA+ G + VGD++L +N + G E + L +
Sbjct: 26 STPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHH-EAVEALRGAGT 83
Query: 259 VLTITTLKP 267
+ + +
Sbjct: 84 AVQMRVWRE 92
Score = 46.5 bits (111), Expect = 2e-06
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 823 YDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD 882
+ G++I ++S AA+ G + VGD++L +N + G E + L +
Sbjct: 26 STPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHH-EAVEALRGAGT 83
Query: 883 VLTITTLKP 891
+ + +
Sbjct: 84 AVQMRVWRE 92
Score = 39.6 bits (93), Expect = 7e-04
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+V D ++ VN + +E +R +GT+ M + R R
Sbjct: 53 RVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRER 93
Score = 35.0 bits (81), Expect = 0.030
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 74 NEALGLELVGGRD-DPFYPNDSSIYVSNIVKGS 105
LG+ + GG+ P+ +D I++S + +
Sbjct: 13 TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEG 45
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 82.1 bits (203), Expect = 1e-18
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 1126 PGELRRVHIDKSVEPLGIQIQCL-DSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMR 1184
G+ R ++ K G ++ + GV+++ ++ +A + G+ D L+EV G N+
Sbjct: 6 SGQPRLCYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVE 65
Query: 1185 SATYQLAASVLRQCGNSITMLVQYSP-DKYHELEGSGSSSA 1224
A+++ +++ G+ + L+ DK H + SG SS
Sbjct: 66 DASHEEVVEKVKKSGSRVMFLLVDKETDKRHVEQKSGPSSG 106
Score = 73.6 bits (181), Expect = 8e-16
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Query: 1230 SGRGSGEPRFLMIETRKCSNLGISLVGGNA-VGIYVHSVQSGSLGYSAGLRTGDRILEYN 1288
S SG+PR + ++ + G SL G+Y+ + + AG+ D ++E N
Sbjct: 2 SSGSSGQPRLCYLV-KEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVN 60
Query: 1289 GTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKPGDS 1332
G ++ A+ EE ++ K +V L V+ K G S
Sbjct: 61 GENVEDASHEEVVEKVKKSGSRVMFLLVDKETDKRHVEQKSGPS 104
Score = 43.9 bits (104), Expect = 3e-05
Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 201 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 260
+ + G+Y+ I+P +A + G + D ++ +N V+ S E + + S +
Sbjct: 26 KTVQGKKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHE-EVVEKVKKSGSRV 83
Query: 261 TITTLKPTS 269
+ +
Sbjct: 84 MFLLVDKET 92
Score = 43.9 bits (104), Expect = 3e-05
Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 825 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 884
+ + G+Y+ I+P +A + G + D ++ +N V+ S E + + S +
Sbjct: 26 KTVQGKKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHE-EVVEKVKKSGSRV 83
Query: 885 TITTLKPTS 893
+ +
Sbjct: 84 MFLLVDKET 92
Score = 29.3 bits (66), Expect = 3.5
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRV 807
+D ++ VN + + S V+E V+ SG+ + ++ +
Sbjct: 51 LADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKET 92
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 88.9 bits (219), Expect = 1e-18
Identities = 33/211 (15%), Positives = 65/211 (30%), Gaps = 32/211 (15%)
Query: 1108 RQNKRNSLPDYCCSHKPHPGELRRVHIDKSVEPLGIQIQCLDSGG----VFVSTVSEHSL 1163
N + D E LG+ + G V ++ +
Sbjct: 185 IINTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGP 244
Query: 1164 ASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSS 1222
A++ G L +GDQ++ + G ++ +++ N + +
Sbjct: 245 AARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVT------- 297
Query: 1223 SAENESVSGRGSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGD 1282
L+ LG S+ G + S+ G + G+R G
Sbjct: 298 ---------------TVLIKRPDLKYQLGFSVQNG-----IICSLMRGGIAERGGVRVGH 337
Query: 1283 RILEYNGTDLRAATAEEAAYELAKPADKVTV 1313
RI+E NG + A E+ L+ ++ +
Sbjct: 338 RIIEINGQSVVATAHEKIVQALSNSVGEIHM 368
Score = 81.9 bits (201), Expect = 3e-16
Identities = 23/132 (17%), Positives = 53/132 (40%), Gaps = 5/132 (3%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARSLVTTQLQLNNSYDH 825
+ D I+ +N + ++ + V + + Y
Sbjct: 252 SIGDQIMSINGTSLVGLPLATCQGIIKGLK-NQTQVKLNIVSCPPVTTVLIKRPDLKYQL 310
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 885
G ++++G IC + G +A + G + VG R++ IN ++V + + + LS+S +
Sbjct: 311 GFSVQNG-IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHE-KIVQALSNSVGEIH 367
Query: 886 ITTLKPTSLGEH 897
+ T+ P ++
Sbjct: 368 MKTM-PAAMFRL 378
Score = 60.8 bits (146), Expect = 2e-09
Identities = 35/275 (12%), Positives = 84/275 (30%), Gaps = 42/275 (15%)
Query: 2 LKPPEPRQQPSENREDQNHVVVPIHKTQVEKESRMLQLHSVSHNYSHDSAIDTDLQEWDT 61
+ + + + + + + Q + + D + ++
Sbjct: 143 FESEDAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQKEYSDIINTQEMYNDDLIHFSNS 202
Query: 62 EVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSVT--DGKLKKKEEVAR 119
E E LG+ +V P + ++N++ G GKL +++
Sbjct: 203 ENCKELQLEKHKGEILGVVVVESGWGSILPT---VILANMMNGGPAARSGKLSIGDQIMS 259
Query: 120 I-KKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVK 178
I + + +K + +I
Sbjct: 260 INGTSLVGLPLATCQGI-----IKGLKNQTQVKLNIVSCPPVTTVLIKRP---------- 304
Query: 179 EINTAMAVTNYLDGLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNR 238
+ Y G ++++G IC + G +A + G + VG R++ IN +
Sbjct: 305 -----------------DLKYQLGFSVQNG-IICSLMRGGIAERGG-VRVGHRIIEINGQ 345
Query: 239 TVDGLSSAREGMALLSDSPDVLTITTLKPTSLGEH 273
+V + + + LS+S + + T+ P ++
Sbjct: 346 SVVATAHE-KIVQALSNSVGEIHMKTM-PAAMFRL 378
Score = 60.0 bits (144), Expect = 3e-09
Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 1122 HKPHPGELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGI 1181
P + LG +Q + ++ +A + G++VG +++E+ G
Sbjct: 291 VSCPPVTTVLIKRPDLKYQLGFSVQ-----NGIICSLMRGGIAERGGVRVGHRIIEINGQ 345
Query: 1182 NMRSATYQLAASVLRQCGNSITMLV 1206
++ + ++ L I M
Sbjct: 346 SVVATAHEKIVQALSNSVGEIHMKT 370
Score = 46.5 bits (109), Expect = 6e-05
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 828 TLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 868
++ + + + G AA+ G L++GD+++SIN ++ GL
Sbjct: 229 SILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLP 269
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 81.2 bits (201), Expect = 2e-18
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 1124 PHPGELRRVHIDKS-VEPLGIQIQC-LDSG-GVFVSTVSEHSLASQVG-LQVGDQLLEVC 1179
G +R+V + K E LGI I + G + +S + A + G L VGD +L V
Sbjct: 5 QGVGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVN 64
Query: 1180 GINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELE 1217
G+N+R ++ A ++L Q I V Y ++H
Sbjct: 65 GVNLRDTKHKEAVTILSQQRGEIEFEVVYVALEHHHHH 102
Score = 70.1 bits (172), Expect = 1e-14
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 1232 RGSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYN 1288
+G G R +++ LGIS+ GG + V I + + G G L GD IL N
Sbjct: 5 QGVGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVN 64
Query: 1289 GTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNE 1324
G +LR +EA L++ ++ Y ++
Sbjct: 65 GVNLRDTKHKEAVTILSQQRGEIEFEVVYVALEHHH 100
Score = 51.2 bits (123), Expect = 6e-08
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 261
G + I +I PG A + G L VGD +L++N + E + +LS +
Sbjct: 30 GKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHK-EAVTILSQQRGEIE 88
Query: 262 IT 263
Sbjct: 89 FE 90
Score = 51.2 bits (123), Expect = 6e-08
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 885
G + I +I PG A + G L VGD +L++N + E + +LS +
Sbjct: 30 GKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHK-EAVTILSQQRGEIE 88
Query: 886 IT 887
Sbjct: 89 FE 90
Score = 34.6 bits (80), Expect = 0.041
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 72 SPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSVTD--GKLK 112
+E LG+ + GG++ + I +S I G D G L
Sbjct: 18 EDHEGLGISITGGKE-----HGVPILISEIHPGQPADRCGGLH 55
Score = 31.2 bits (71), Expect = 0.61
Identities = 5/41 (12%), Positives = 13/41 (31%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
V D I+ VN ++ + + + + +
Sbjct: 55 HVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVA 95
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 80.9 bits (200), Expect = 3e-18
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 1124 PHPGELRRVHIDKSVEPLGIQI--------QCLDSGGVFVSTVSEHSLASQVGLQVGDQL 1175
E + I + LGI I D G+F+S VSE A++ G++VGD+L
Sbjct: 11 RIEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKL 70
Query: 1176 LEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYH 1214
LEV G+ ++ A + A LR G ++ M V
Sbjct: 71 LEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESGPSS 109
Score = 68.1 bits (167), Expect = 1e-13
Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 19/113 (16%)
Query: 1218 GSGSSSAENESVSGRGSGEPRFLMIETRKCSN-LGISLVGG--------NAVGIYVHSVQ 1268
GS SS E + E L + + + LGIS+ GG + GI++ V
Sbjct: 1 GSSGSSGEPARI------EEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVS 54
Query: 1269 SGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVER 1321
AG+R GD++LE NG L+ A EA L V + V R
Sbjct: 55 EEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMR----VWR 103
Score = 47.7 bits (114), Expect = 1e-06
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 199 YDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD 258
+ G++I ++S AA+ G + VGD++L +N + G E + L +
Sbjct: 38 STPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHH-EAVEALRGAGT 95
Query: 259 VLTITTLKPTS 269
+ + + +
Sbjct: 96 AVQMRVWRESG 106
Score = 47.7 bits (114), Expect = 1e-06
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 823 YDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD 882
+ G++I ++S AA+ G + VGD++L +N + G E + L +
Sbjct: 38 STPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHH-EAVEALRGAGT 95
Query: 883 VLTITTLKPTS 893
+ + + +
Sbjct: 96 AVQMRVWRESG 106
Score = 38.9 bits (91), Expect = 0.002
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+V D ++ VN + +E +R +GT+ M + R
Sbjct: 65 RVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRES 105
Score = 35.0 bits (81), Expect = 0.036
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 74 NEALGLELVGGRD-DPFYPNDSSIYVSNIVKGSVTD 108
LG+ + GG+ P+ +D I++S + +
Sbjct: 25 TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAA 60
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 79.9 bits (198), Expect = 4e-18
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 1124 PHPGELRRVHIDKSVEPLGIQI-----QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLE 1177
P PG++ V + K+ LGI + + GG++V V A G + GD++L
Sbjct: 1 PKPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLA 60
Query: 1178 VCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211
V G+++ AT++ A LR G + +L++
Sbjct: 61 VNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS 94
Score = 61.4 bits (150), Expect = 1e-11
Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 1236 EPRFLMIETRKCSN-LGISLVGG-----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYN 1288
+E K N LGIS+ GG GIYV +V S G + GDR+L N
Sbjct: 3 PGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVN 62
Query: 1289 GTDLRAATAEEAAYELAKPADKVTVL 1314
G L AT ++A L V +L
Sbjct: 63 GVSLEGATHKQAVETLRNTGQVVHLL 88
Score = 55.3 bits (134), Expect = 2e-09
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 266
G+Y+ + P A +G + GDRVL++N +++G + + + L ++ V+ + K
Sbjct: 33 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHK-QAVETLRNTGQVVHLLLEK 91
Query: 267 PTS 269
S
Sbjct: 92 GQS 94
Score = 55.3 bits (134), Expect = 2e-09
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 890
G+Y+ + P A +G + GDRVL++N +++G + + + L ++ V+ + K
Sbjct: 33 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHK-QAVETLRNTGQVVHLLLEK 91
Query: 891 PTS 893
S
Sbjct: 92 GQS 94
Score = 34.1 bits (79), Expect = 0.052
Identities = 7/41 (17%), Positives = 21/41 (51%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
D ++ VN + + + +ET+R++G +++ + +
Sbjct: 53 HKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQ 93
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 81.0 bits (200), Expect = 5e-18
Identities = 21/106 (19%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 1121 SHKPHPGELRRVHIDKSVEPLGIQI---QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLL 1176
+ PGEL + ++K LG+ + + +FV ++ A+ G +++GD+LL
Sbjct: 18 RYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELL 77
Query: 1177 EVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSS 1222
E+ + ++Q A+++++ + + ++ + D +++ SS
Sbjct: 78 EINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVNQMASGPSS 123
Score = 69.0 bits (169), Expect = 6e-14
Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 5/117 (4%)
Query: 1219 SGSSSAENESVSGRGSGEPRFLMIETRKCSN-LGISLVGG---NAVGIYVHSVQSGSLGY 1274
SG + + + +IE K N LG+SL G + + I+V +
Sbjct: 6 SGDAFTDQKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAA 65
Query: 1275 SAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKPG 1330
+ G +R GD +LE N L + + A+ + KV ++ + + N++ P
Sbjct: 66 ADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVNQMASGPS 122
Score = 54.4 bits (131), Expect = 1e-08
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 208 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 267
+++ I+P AA +G + +GD +L INN+ + G S A++ +P + + ++
Sbjct: 52 SIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQ-NASAIIKTAPSKVKLVFIRN 110
Query: 268 TS 269
Sbjct: 111 ED 112
Score = 54.4 bits (131), Expect = 1e-08
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 832 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 891
+++ I+P AA +G + +GD +L INN+ + G S A++ +P + + ++
Sbjct: 52 SIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQ-NASAIIKTAPSKVKLVFIRN 110
Query: 892 TS 893
Sbjct: 111 ED 112
Score = 35.5 bits (82), Expect = 0.032
Identities = 6/41 (14%), Positives = 18/41 (43%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
++ D ++ +NN S + ++++ + +V R
Sbjct: 71 RIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNE 111
Score = 33.2 bits (76), Expect = 0.21
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
LGL L G +D + SI+V I DG+++
Sbjct: 35 KNGLGLSLAGNKD----RSRMSIFVVGINPEGPAAADGRMR 71
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 79.3 bits (196), Expect = 1e-17
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 1126 PGELRRVHIDKSVEPLGIQI-----QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVC 1179
G + V +++ LG+ + L + G+++ T+ S A+ G L +GD++LEV
Sbjct: 6 SGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVN 65
Query: 1180 GINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSA 1224
G ++ Y A ++R G + LV S + + SG SS
Sbjct: 66 GSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHSGPSSG 110
Score = 61.2 bits (149), Expect = 3e-11
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 7/109 (6%)
Query: 1231 GRGSGEPRFLMIETRKCSN-LGISLVGG-----NAVGIYVHSVQSGSLGYSAG-LRTGDR 1283
G +E + + LG+ L+ G A G+Y+ ++ GS + G L GDR
Sbjct: 1 GSSGSSGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDR 60
Query: 1284 ILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKPGDS 1332
ILE NG+ L A + K+ L S + S
Sbjct: 61 ILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHSGPSS 109
Score = 54.3 bits (131), Expect = 6e-09
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 266
GLYI + PGS AA +G L++GDR+L +N ++ GL + L+ + K
Sbjct: 36 PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYL-RAVDLIRHGGKKMRFLVAK 94
Query: 267 PTSLGEHSPRV 277
Sbjct: 95 SDVETAKKIHS 105
Score = 54.3 bits (131), Expect = 6e-09
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 890
GLYI + PGS AA +G L++GDR+L +N ++ GL + L+ + K
Sbjct: 36 PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYL-RAVDLIRHGGKKMRFLVAK 94
Query: 891 PTSLGEHSPRV 901
Sbjct: 95 SDVETAKKIHS 105
Score = 36.2 bits (84), Expect = 0.015
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRV 807
+ D I+ VN + ++ +R G ++ + V
Sbjct: 56 SLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDV 97
Score = 35.4 bits (82), Expect = 0.029
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 77 LGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
LG+ L+ G +Y+ ++ GS DG+L
Sbjct: 21 LGMGLIDGMHTHL--GAPGLYIQTLLPGSPAAADGRLS 56
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 78.1 bits (193), Expect = 2e-17
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 1126 PGELRRVHIDKSVEPLGIQI--QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGIN 1182
G V + K+ E LG I + +++S V +A + G L+ GDQLL V G++
Sbjct: 3 SGSSGVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVS 62
Query: 1183 MRSATYQLAASVLRQCGNSITMLVQYSP 1210
+ ++ A +L+ S+ ++V+ P
Sbjct: 63 VEGEQHEKAVELLKAAQGSVKLVVRSGP 90
Score = 64.6 bits (158), Expect = 1e-12
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 1234 SGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGT 1290
SG + + + LG +++GG IY+ V G + G L+ GD++L NG
Sbjct: 3 SGSSGVVELP-KTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGV 61
Query: 1291 DLRAATAEEAAYELAKPADKVTVLAQY 1317
+ E+A L V ++ +
Sbjct: 62 SVEGEQHEKAVELLKAAQGSVKLVVRS 88
Score = 52.2 bits (126), Expect = 2e-08
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 263
S +YI ++ PG +A + G L GD++LS+N +V+G + + LL + + +
Sbjct: 30 SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHE-KAVELLKAAQGSVKLV 85
Score = 52.2 bits (126), Expect = 2e-08
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887
S +YI ++ PG +A + G L GD++LS+N +V+G + + LL + + +
Sbjct: 30 SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHE-KAVELLKAAQGSVKLV 85
Score = 33.0 bits (76), Expect = 0.11
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
K D ++ VN + +E ++++ S +V+R
Sbjct: 50 KRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRSGP 90
Score = 32.6 bits (75), Expect = 0.18
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLKK 113
+E LG ++GG++ +S IY+S ++ G V G LK+
Sbjct: 15 DEGLGFNIMGGKE-----QNSPIYISRVIPGGVADRHGGLKR 51
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 79.0 bits (195), Expect = 2e-17
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 1121 SHKPHPGELRRVHIDKSVEPLGIQI---QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLL 1176
+ PG+ + I K LG+ I + + + V E A++ G L GDQ+L
Sbjct: 10 TCPIVPGQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQIL 69
Query: 1177 EVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSS 1222
EV G+++R+++++ A + LRQ + ++V Y + E SS
Sbjct: 70 EVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYRDEESGPSS 115
Score = 67.8 bits (166), Expect = 1e-13
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 1220 GSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG---NAVGIYVHSVQSGSLGYSA 1276
GSS + + G+ + I + S LG+S+VGG I +H V
Sbjct: 1 GSSGSSGPATCPIVPGQEMIIEIS-KGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARD 59
Query: 1277 G-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKP 1329
G L GD+ILE NG DLR ++ EEA L + KV ++ Y + + P
Sbjct: 60 GRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYRDEESGP 113
Score = 51.2 bits (123), Expect = 1e-07
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 204 TLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 263
T + + I ++ AA++G L GD++L +N + S E + L +P + +
Sbjct: 40 TPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHE-EAITALRQTPQKVRLV 98
Query: 264 TLKPTS 269
+ +
Sbjct: 99 VYRDEA 104
Score = 51.2 bits (123), Expect = 1e-07
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 828 TLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887
T + + I ++ AA++G L GD++L +N + S E + L +P + +
Sbjct: 40 TPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHE-EAITALRQTPQKVRLV 98
Query: 888 TLKPTS 893
+ +
Sbjct: 99 VYRDEA 104
Score = 34.7 bits (80), Expect = 0.053
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARS 811
D I+ VN +D N S + +R + +V+ R R
Sbjct: 63 WAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYRD 108
Score = 34.3 bits (79), Expect = 0.072
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLKK 113
LGL +VGG+D P I + + + DG+L
Sbjct: 27 RSGLGLSIVGGKDTPLNA----IVIHEVYEEGAAARDGRLWA 64
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 77.3 bits (191), Expect = 2e-17
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 1128 ELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSAT 1187
+R V + + G + +S V S A VGL+ GDQ+L V IN++ A+
Sbjct: 2 RVRSVEVARGRAGYGFTLSG--QAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKAS 59
Query: 1188 YQLAASVLRQCGNSITMLVQYSP 1210
++ ++ +C + M++
Sbjct: 60 HEDVVKLIGKCSGVLHMVIAEGV 82
Score = 58.4 bits (142), Expect = 1e-10
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 1236 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAA 1295
R + + R + G +L G + V GS GLR GD+IL N +++ A
Sbjct: 2 RVRSVEVA-RGRAGYGFTLSGQA--PCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKA 58
Query: 1296 TAEEAAYELAKPADKVTVL 1314
+ E+ + K + + ++
Sbjct: 59 SHEDVVKLIGKCSGVLHMV 77
Score = 44.1 bits (105), Expect = 1e-05
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 202 GLTL--ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 259
G TL ++ + + GS A G L GD++L++N V S + + L+ V
Sbjct: 16 GFTLSGQAPCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHE-DVVKLIGKCSGV 73
Query: 260 LTITTLKP 267
L + +
Sbjct: 74 LHMVIAEG 81
Score = 44.1 bits (105), Expect = 1e-05
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 826 GLTL--ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 883
G TL ++ + + GS A G L GD++L++N V S + + L+ V
Sbjct: 16 GFTLSGQAPCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHE-DVVKLIGKCSGV 73
Query: 884 LTITTLKP 891
L + +
Sbjct: 74 LHMVIAEG 81
Score = 32.6 bits (75), Expect = 0.16
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRR 804
+ D I+ VN ++ S V++ + MVI
Sbjct: 42 RAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAE 80
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium, synaptosome,
tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 78.1 bits (193), Expect = 2e-17
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 1126 PGELRRVHIDKSVEPLGIQI------QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEV 1178
E V + K+V+ LGI I + L+ G+FV ++++ S G +Q+GDQ++ V
Sbjct: 2 MSETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAV 61
Query: 1179 CGINMRSATYQLAASVLRQCGNSITMLVQYSPDK 1212
G N++ T Q A VLR G ++ + + +
Sbjct: 62 DGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 95
Score = 57.7 bits (140), Expect = 3e-10
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 1242 IETRKCSN-LGISLVGG------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 1293
+E K LGI++ G GI+V S+ S G ++ GD+I+ +GT+L+
Sbjct: 8 VELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQ 67
Query: 1294 AATAEEAAYELAKPADKVTVL 1314
T ++A L V +
Sbjct: 68 GFTNQQAVEVLRHTGQTVLLT 88
Score = 54.2 bits (131), Expect = 5e-09
Identities = 10/61 (16%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 266
SG+++ I+ S +G + +GD++++++ + G ++ + + +L + + +T ++
Sbjct: 33 SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQ-QAVEVLRHTGQTVLLTLMR 91
Query: 267 P 267
Sbjct: 92 R 92
Score = 54.2 bits (131), Expect = 5e-09
Identities = 10/61 (16%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 890
SG+++ I+ S +G + +GD++++++ + G ++ + + +L + + +T ++
Sbjct: 33 SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQ-QAVEVLRHTGQTVLLTLMR 91
Query: 891 P 891
Sbjct: 92 R 92
Score = 36.5 bits (85), Expect = 0.007
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 61 TEVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
+E D+ LT + LG+ + G D S I+V +I K S DG+++
Sbjct: 3 SETFDVELTK--NVQGLGITIAGYIGDKKLE-PSGIFVKSITKSSAVEHDGRIQ 53
Score = 35.3 bits (82), Expect = 0.024
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
++ D I+ V+ + + + +E +R +G + L+ + RR
Sbjct: 53 QIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 93
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics
in europe, spine, structural genomics, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 78.2 bits (193), Expect = 2e-17
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 1124 PHPGELRRVHIDKSVEPLGIQI----------QCLDSGGVFVSTVSEHSLASQVG-LQVG 1172
P PG++ V + K+ LGI + + GG++V V A G + G
Sbjct: 5 PKPGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKG 64
Query: 1173 DQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHE 1215
D++L V G+++ AT++ A LR G + +L++ +
Sbjct: 65 DRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSPTSK 107
Score = 56.6 bits (137), Expect = 8e-10
Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 12/101 (11%)
Query: 1236 EPRFLMIETRKCSN-LGISLVGGNAV----------GIYVHSVQSGSLGYSAG-LRTGDR 1283
+E K N LGIS+ GIYV +V S G + GDR
Sbjct: 7 PGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDR 66
Query: 1284 ILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNE 1324
+L NG L AT ++A L V +L + ++
Sbjct: 67 VLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSPTSK 107
Score = 53.9 bits (130), Expect = 7e-09
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 811 SLVTTQLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSA 870
S+ + + G+Y+ + P A +G + GDRVL++N +++G +
Sbjct: 25 SVTVLFDKGGVNTSVR---HGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHK 81
Query: 871 REGMALLSDSPDVLTITTLKPTS 893
+ + L ++ V+ + K S
Sbjct: 82 -QAVETLRNTGQVVHLLLEKGQS 103
Score = 53.9 bits (130), Expect = 1e-08
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
G+Y+ + P A +G + GDRVL++N +++G + + + L ++ V+ +
Sbjct: 41 HGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHK-QAVETLRNTGQVVHLLLE 99
Query: 266 KPTS 269
K S
Sbjct: 100 KGQS 103
Score = 33.5 bits (77), Expect = 0.12
Identities = 7/41 (17%), Positives = 21/41 (51%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
D ++ VN + + + +ET+R++G +++ + +
Sbjct: 62 HKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQ 102
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 78.7 bits (194), Expect = 2e-17
Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 16/116 (13%)
Query: 1218 GSGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG-----------NAVGIYVHS 1266
GS SS N S G PR + I +LGIS+VGG GI++
Sbjct: 1 GSSGSSGPNFSHWG----PPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQ 56
Query: 1267 VQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVER 1321
V S L+TGD+ILE +G DL+ A+ EA + + V + Q
Sbjct: 57 VLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSST 112
Score = 78.3 bits (193), Expect = 3e-17
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 16/108 (14%)
Query: 1120 CSHKP---HPGELRRVHIDK-SVEPLGIQI-----------QCLDSGGVFVSTVSEHSLA 1164
S P H G R V I + LGI I + G+F+ V E S A
Sbjct: 4 GSSGPNFSHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPA 63
Query: 1165 SQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211
+ L+ GD++LEV G+++++A++ A ++ GN + +VQ
Sbjct: 64 GKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSS 111
Score = 52.1 bits (125), Expect = 4e-08
Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 263
G++I ++ S A K +L GD++L ++ + S + E + + ++ + +
Sbjct: 50 KGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHS-EAVEAIKNAGNPVVFI 105
Score = 52.1 bits (125), Expect = 4e-08
Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887
G++I ++ S A K +L GD++L ++ + S + E + + ++ + +
Sbjct: 50 KGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHS-EAVEAIKNAGNPVVFI 105
Score = 36.7 bits (85), Expect = 0.010
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 73 PNEALGLELVGGRDDPFYP----NDSSIYVSNIVKGSV--TDGKLKK 113
PN +LG+ +VGG+ I++ +++ S LK
Sbjct: 25 PNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKT 71
Score = 35.1 bits (81), Expect = 0.035
Identities = 10/47 (21%), Positives = 23/47 (48%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARSL 812
K D I+ V+ +D N S +E ++++G + +++ R +
Sbjct: 70 KTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSSTPRVI 116
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF),
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.2
Length = 119
Score = 78.3 bits (193), Expect = 3e-17
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 1123 KPHPGELRRVHIDKSVEPLGIQI---QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEV 1178
K G + + LG + L++ + V V + LASQ G +Q G+++L +
Sbjct: 11 KQLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSI 70
Query: 1179 CGINMRSATYQLAASVLRQCGNSITMLVQY---SPDKYHELEGSGSSSA 1224
G +++ T+ A ++LRQ ++ +P+ +L SG SS
Sbjct: 71 NGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPDLNSSGPSSG 119
Score = 62.9 bits (153), Expect = 8e-12
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 9/115 (7%)
Query: 1219 SGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG---NAVGIYVHSVQSGSLGYS 1275
SGSS A + + G ++ + + LG SL GG I VH V L
Sbjct: 3 SGSSGATLKQLDG-----IHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQ 57
Query: 1276 AG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKP 1329
G ++ G+ +L NG L+ T +A L + + + + D
Sbjct: 58 EGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPDLN 112
Score = 52.1 bits (125), Expect = 5e-08
Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 266
+ + ++ P LA++EG++ G+ VLSIN +++ G + + +A+L + + +
Sbjct: 42 KVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHH-DALAILRQAREPRQAVIVT 100
Query: 267 PTSLGEHSPRVHRKS 281
E P ++
Sbjct: 101 RKLTPEAMPDLNSSG 115
Score = 52.1 bits (125), Expect = 5e-08
Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 890
+ + ++ P LA++EG++ G+ VLSIN +++ G + + +A+L + + +
Sbjct: 42 KVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHH-DALAILRQAREPRQAVIVT 100
Query: 891 PTSLGEHSPRVHRKS 905
E P ++
Sbjct: 101 RKLTPEAMPDLNSSG 115
Score = 35.9 bits (83), Expect = 0.023
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 73 PNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLKK 113
LG L GG D + I V + + +G ++K
Sbjct: 25 EGAGLGFSLAGGADLE----NKVITVHRVFPNGLASQEGTIQK 63
Score = 32.8 bits (75), Expect = 0.29
Identities = 6/42 (14%), Positives = 16/42 (38%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRV 807
+ + ++ +N + L +R + VI R++
Sbjct: 62 QKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKL 103
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic
reticulum, postsynaptic membrane, membrane, MEMB protein;
1.5A {Homo sapiens}
Length = 97
Score = 77.3 bits (191), Expect = 3e-17
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 1128 ELRRVHIDKSVEPLGIQI------QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCG 1180
V + K G I S V +++V A + G ++ GD+LL V G
Sbjct: 3 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDG 62
Query: 1181 INMRSATYQLAASVLRQCGNSITMLVQYSPDKY 1213
I + T+ A S+L+QCG +L++Y +
Sbjct: 63 IRLLGTTHAEAMSILKQCGQEAALLIEYDVSET 95
Score = 64.2 bits (157), Expect = 1e-12
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 1242 IETRKCSN-LGISLVGG------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 1293
+ K N G + GG + + + SV+ G G ++ GDR+L +G L
Sbjct: 7 VTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLL 66
Query: 1294 AATAEEAAYELAKPADKVTVLAQYSVERY 1322
T EA L + + +L +Y V
Sbjct: 67 GTTHAEAMSILKQCGQEAALLIEYDVSET 95
Score = 54.2 bits (131), Expect = 5e-09
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 200 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 259
+ I + PG A +EG++ GDR+LS++ + G + A E M++L
Sbjct: 25 HDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHA-EAMSILKQCGQE 83
Query: 260 LTIT 263
+
Sbjct: 84 AALL 87
Score = 54.2 bits (131), Expect = 5e-09
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 824 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 883
+ I + PG A +EG++ GDR+LS++ + G + A E M++L
Sbjct: 25 HDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHA-EAMSILKQCGQE 83
Query: 884 LTIT 887
+
Sbjct: 84 AALL 87
Score = 35.7 bits (83), Expect = 0.018
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKGSVT--DGKLK 112
G + GG D + ++++ G +G +K
Sbjct: 13 GNTFGFVIRGGAHDD-RNKSRPVVITSVRPGGPADREGTIK 52
Score = 34.9 bits (81), Expect = 0.031
Identities = 6/40 (15%), Positives = 16/40 (40%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRR 805
K D ++ V+ + + + ++ G A ++I
Sbjct: 52 KPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLIEYD 91
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 77.4 bits (191), Expect = 3e-17
Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 1121 SHKPHPGELRRVHIDK-SVEPLGIQIQCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEV 1178
H +R + +K + EP+GI ++ + V+ + + + G L VGD++LE+
Sbjct: 5 HHHHSGHMVRLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEI 64
Query: 1179 CGINMRSATYQLAASVLRQCGNSITMLV 1206
G N+ + + +++ I++ V
Sbjct: 65 NGTNVTNHSVDQLQKAMKETKGMISLKV 92
Score = 55.4 bits (134), Expect = 2e-09
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 1241 MIETRKCSN--LGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATA 1297
+I+ K + +GI L V + G + + G L GD ILE NGT++ +
Sbjct: 15 LIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSV 74
Query: 1298 EEAAYELAKPADKVTV 1313
++ + + +++
Sbjct: 75 DQLQKAMKETKGMISL 90
Score = 51.2 bits (123), Expect = 6e-08
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 202 GLTL----ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP 257
G+ L + + +I G + ++GSL VGD +L IN V S + + ++
Sbjct: 27 GICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVD-QLQKAMKETK 85
Query: 258 DVLTITTL 265
++++ +
Sbjct: 86 GMISLKVI 93
Score = 51.2 bits (123), Expect = 6e-08
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 826 GLTL----ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP 881
G+ L + + +I G + ++GSL VGD +L IN V S + + ++
Sbjct: 27 GICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVD-QLQKAMKETK 85
Query: 882 DVLTITTL 889
++++ +
Sbjct: 86 GMISLKVI 93
Score = 29.3 bits (66), Expect = 2.6
Identities = 6/37 (16%), Positives = 11/37 (29%), Gaps = 7/37 (18%)
Query: 72 SPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSVTD 108
E +G+ L V+ I+ G +
Sbjct: 21 VTEEPMGICLKLNEKQS-------CTVARILHGGMIH 50
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 77.4 bits (191), Expect = 4e-17
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 1123 KPHPGELRRVHIDKS-VEPLGIQIQ-CLDSG-GVFVSTVSEHSLASQVGLQVGDQLLEVC 1179
+ V ++KS LG ++ + G G+FVS V E S A + GL VGD++ EV
Sbjct: 5 SSGSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVN 64
Query: 1180 GINMRSATYQLAASVLRQCGNSITMLVQYSP 1210
G+++ S T A VL + + M+V+
Sbjct: 65 GLSLESTTMGSAVKVLTS-SSRLHMMVRRMG 94
Score = 77.0 bits (190), Expect = 5e-17
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 1228 SVSGRGSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRIL 1285
S GS + +E LG S+ GG + +GI+V V+ GS AGL GD+I
Sbjct: 2 SSGSSGSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKIT 61
Query: 1286 EYNGTDLRAATAEEAAYELAKPADKVTVLAQY 1317
E NG L + T A ++ + ++ ++ +
Sbjct: 62 EVNGLSLESTTMGSAV-KVLTSSSRLHMMVRR 92
Score = 44.6 bits (106), Expect = 1e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 192 GLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 244
G + +HGL G+++ K+ GS A + G L VGD++ +N +++ +
Sbjct: 25 GFSVRGGSEHGL----GIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTT 72
Score = 44.3 bits (105), Expect = 1e-05
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 824 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 868
+HGL G+++ K+ GS A + G L VGD++ +N +++ +
Sbjct: 33 EHGL----GIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTT 72
Score = 34.2 bits (79), Expect = 0.048
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRV 807
V D I VN L + + ++ + SS +MV R
Sbjct: 55 CVGDKITEVNGLSLESTTMGSAVKVLTSSSRLHMMVRRMGSG 96
Score = 31.2 bits (71), Expect = 0.60
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 72 SPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSVTD 108
SP LG + GG + + I+VS + +GS +
Sbjct: 19 SPAGRLGFSVRGGSE-----HGLGIFVSKVEEGSSAE 50
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 76.6 bits (189), Expect = 6e-17
Identities = 18/88 (20%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 1127 GELRRVHIDKSVEPLGIQIQCLD--SGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINM 1183
+ V + + PLGI I + + +S++++ LA + G + +GD++L + ++
Sbjct: 4 AIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSL 63
Query: 1184 RSATYQLAASVLRQCGNSITMLVQYSPD 1211
+ A +L+ G ++T+ ++ D
Sbjct: 64 KGKPLSEAIHLLQMAGETVTLKIKKQTD 91
Score = 60.4 bits (147), Expect = 4e-11
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 1234 SGEPRFLMIETRKCSN-LGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 1289
S +E ++ LGI++ G I + S+ G L G + GDRIL N
Sbjct: 1 SSGAIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINS 60
Query: 1290 TDLRAATAEEAAYELAKPADKVTVLAQYSVERYNE 1324
+ L+ EA + L + VT+ + +
Sbjct: 61 SSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQPA 95
Score = 51.6 bits (124), Expect = 4e-08
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 266
+ I ++ G LA + G++ +GDR+L+IN+ ++ G + E + LL + + +T+ K
Sbjct: 30 DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLS-EAIHLLQMAGETVTLKIKK 88
Query: 267 PTSLGEHS 274
T S
Sbjct: 89 QTDAQPAS 96
Score = 51.6 bits (124), Expect = 4e-08
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 890
+ I ++ G LA + G++ +GDR+L+IN+ ++ G + E + LL + + +T+ K
Sbjct: 30 DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLS-EAIHLLQMAGETVTLKIKK 88
Query: 891 PTSLGEHS 898
T S
Sbjct: 89 QTDAQPAS 96
Score = 31.5 bits (72), Expect = 0.41
Identities = 5/41 (12%), Positives = 18/41 (43%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+ D I+ +N+ + ++ +G + + I+++
Sbjct: 50 HIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQT 90
Score = 30.7 bits (70), Expect = 0.87
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
LG+ + G + I +S++ KG + G +
Sbjct: 15 GGPLGITISGTEE-----PFDPIIISSLTKGGLAERTGAIH 50
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 75.8 bits (187), Expect = 1e-16
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 196 NNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSD 255
+ ++GL L S +++ +++ LA K+G+L GD +L IN + +S + L+
Sbjct: 10 RANEEYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLT-DARKLIEK 68
Query: 256 SPDVLTITTLKPTSLGEH 273
S L + L+ H
Sbjct: 69 SRGKLQLVVLRDLEHHHH 86
Score = 75.8 bits (187), Expect = 1e-16
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 820 NNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSD 879
+ ++GL L S +++ +++ LA K+G+L GD +L IN + +S + L+
Sbjct: 10 RANEEYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLT-DARKLIEK 68
Query: 880 SPDVLTITTLKPTSLGEH 897
S L + L+ H
Sbjct: 69 SRGKLQLVVLRDLEHHHH 86
Score = 62.7 bits (153), Expect = 3e-12
Identities = 14/74 (18%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 1135 DKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAAS 1193
++ E G+++ +FV ++ LA++ G L GD +L++ G + + A
Sbjct: 9 SRANEEYGLRLGS----QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARK 64
Query: 1194 VLRQCGNSITMLVQ 1207
++ + + ++V
Sbjct: 65 LIEKSRGKLQLVVL 78
Score = 55.4 bits (134), Expect = 1e-09
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 1244 TRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAY 1302
+ +N L G+ I+V + L G L GD IL+ NGT + +A
Sbjct: 7 MKSRANEEYGLRLGS--QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARK 64
Query: 1303 ELAKPADKVT 1312
+ K K+
Sbjct: 65 LIEKSRGKLQ 74
Score = 31.5 bits (72), Expect = 0.35
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRR 805
D I+++N N+S + + S +V+ R
Sbjct: 41 HEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRD 80
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 75.4 bits (186), Expect = 1e-16
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 1126 PGELRRVHIDKS-VEPLGIQIQCLDSGG------VFVSTVSEHSLASQVG-LQVGDQLLE 1177
+ RRV + K+ LGI I GG + +S + + A Q L VGD +L
Sbjct: 2 SLQRRRVTVRKADAGGLGISI----KGGRENKMPILISKIFKGLAADQTEALFVGDAILS 57
Query: 1178 VCGINMRSATYQLAASVLRQCGNSITMLVQY 1208
V G ++ SAT+ A L++ G + + V+Y
Sbjct: 58 VNGEDLSSATHDEAVQALKKTGKEVVLEVKY 88
Score = 67.3 bits (165), Expect = 1e-13
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 1233 GSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 1289
GS + R + + LGIS+ GG N + I + + G L GD IL NG
Sbjct: 1 GSLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNG 60
Query: 1290 TDLRAATAEEAAYELAKPADKVTVLAQY 1317
DL +AT +EA L K +V + +Y
Sbjct: 61 EDLSSATHDEAVQALKKTGKEVVLEVKY 88
Score = 50.4 bits (121), Expect = 9e-08
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 208 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 263
+ I KI G A + +L VGD +LS+N + + E + L + + +
Sbjct: 31 PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHD-EAVQALKKTGKEVVLE 85
Score = 50.4 bits (121), Expect = 9e-08
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 832 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887
+ I KI G A + +L VGD +LS+N + + E + L + + +
Sbjct: 31 PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHD-EAVQALKKTGKEVVLE 85
Score = 36.1 bits (84), Expect = 0.009
Identities = 8/41 (19%), Positives = 21/41 (51%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
V D I+ VN D S+ + ++ ++ +G ++ ++ +
Sbjct: 50 FVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMK 90
Score = 35.3 bits (82), Expect = 0.016
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 72 SPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
+ LG+ + GGR+ N I +S I KG L
Sbjct: 13 ADAGGLGISIKGGRE-----NKMPILISKIFKGLAADQTEALF 50
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 76.4 bits (188), Expect = 2e-16
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 1130 RRVHIDKSVEPLGIQIQC-LDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATY 1188
R + K G + G F+ +V S A GL+ D+++EV G+ M +
Sbjct: 11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQH 70
Query: 1189 QLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENES 1228
S +R G+ +LV + S E+ +
Sbjct: 71 GDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLN 110
Score = 63.0 bits (153), Expect = 9e-12
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 1237 PRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAA 1295
PR ++ + S G +L + G ++ SV S ++GLR DRI+E NG +
Sbjct: 10 PRLCTMK-KGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGK 68
Query: 1296 TAEEAAYELAKPADKVTVLAQY--SVERYNEVKDKPGDS 1332
+ + D+ +L + E + + + P
Sbjct: 69 QHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQE 107
Score = 46.8 bits (111), Expect = 5e-06
Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 10/112 (8%)
Query: 825 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 884
H + G +I + P S A G L DR++ +N ++G + ++ + D
Sbjct: 27 HSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQH-GDVVSAIRAGGDET 84
Query: 885 TITTLKPTSLGEHSPRVHRKSVNSSTQTMPLYVRYGDQPPPDSYQVPKTSTK 936
+ + + + + R + PL P + ++ K +++
Sbjct: 85 KLLVVDRET--DEFFKKCRVIPSQEHLNGPL------PVPFTNGEIQKENSR 128
Score = 45.6 bits (108), Expect = 1e-05
Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 201 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 260
H + G +I + P S A G L DR++ +N ++G + ++ + D
Sbjct: 27 HSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQH-GDVVSAIRAGGDET 84
Query: 261 TITTLKPTSLGEHSPRVHRKSVNSSTQTMPL 291
+ + + + + R + PL
Sbjct: 85 KLLVVDRET--DEFFKKCRVIPSQEHLNGPL 113
Score = 28.3 bits (63), Expect = 10.0
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSA-LMVIRRR 805
+ D IV VN + V+ +R+ G L+V+ R
Sbjct: 52 RAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRE 92
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics,
structural genomics consortium, SGC; 1.50A {Homo sapiens}
Length = 98
Score = 75.0 bits (185), Expect = 2e-16
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 1127 GELRRVHIDKSVEPLGIQI---QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGIN 1182
G + I K LG+ I G + + V E A + G L GDQ+LEV GI+
Sbjct: 3 GCETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGID 62
Query: 1183 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELE 1217
+R AT+ A +VLRQ + + + Y
Sbjct: 63 LRKATHDEAINVLRQTPQRVRLTLYRDEAPYKSTR 97
Score = 60.4 bits (147), Expect = 4e-11
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 1242 IETRKCSN-LGISLVGG---NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAAT 1296
IE K LG+S+VGG I +H V G L GD+ILE NG DLR AT
Sbjct: 8 IEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKAT 67
Query: 1297 AEEAAYELAKPADKVTVLAQYSVERYNE 1324
+EA L + +V + Y
Sbjct: 68 HDEAINVLRQTPQRVRLTLYRDEAPYKS 95
Score = 50.8 bits (122), Expect = 8e-08
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 204 TLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 263
TL + I ++ A K+G L GD++L +N + + E + +L +P + +T
Sbjct: 27 TLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHD-EAINVLRQTPQRVRLT 85
Query: 264 TLKPTSLGEHSPRV 277
+ + S R+
Sbjct: 86 LYRDEA-PYKSTRL 98
Score = 50.8 bits (122), Expect = 8e-08
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 828 TLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887
TL + I ++ A K+G L GD++L +N + + E + +L +P + +T
Sbjct: 27 TLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHD-EAINVLRQTPQRVRLT 85
Query: 888 TLKPTSLGEHSPRV 901
+ + S R+
Sbjct: 86 LYRDEA-PYKSTRL 98
Score = 35.7 bits (83), Expect = 0.018
Identities = 8/46 (17%), Positives = 17/46 (36%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARS 811
D I+ VN +D + + +R + + + R +S
Sbjct: 50 WAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDEAPYKS 95
Score = 33.8 bits (78), Expect = 0.079
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
LGL +VGG D I + + + DG+L
Sbjct: 14 RTGLGLSIVGGSDTLLGA----IIIHEVYEEGAACKDGRLW 50
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens}
SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 74.6 bits (184), Expect = 3e-16
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 1130 RRVHIDKSVEPLGIQIQC-LDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATY 1188
R ++K G + G ++ V S A + GL GD+L+EV G N+ T+
Sbjct: 5 RLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETH 64
Query: 1189 QLAASVLRQCGNSITMLVQYSPDKYHEL 1216
Q S +R N++ +LV P+ +L
Sbjct: 65 QQVVSRIRAALNAVRLLVV-DPETDEQL 91
Score = 61.5 bits (150), Expect = 1e-11
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 1237 PRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAA 1295
PR +E + + G L G +G Y+ V+ GS AGL GDR++E NG ++
Sbjct: 4 PRLCCLE-KGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKE 62
Query: 1296 TAEEAAYELAKPADKVTVL 1314
T ++ + + V +L
Sbjct: 63 THQQVVSRIRAALNAVRLL 81
Score = 43.8 bits (104), Expect = 2e-05
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 201 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 260
HG + G YI + PGS A K G L GDR++ +N V+ + + ++ + + + +
Sbjct: 21 HGEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQ-QVVSRIRAALNAV 78
Query: 261 TITTLKP 267
+ + P
Sbjct: 79 RLLVVDP 85
Score = 43.8 bits (104), Expect = 2e-05
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 825 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 884
HG + G YI + PGS A K G L GDR++ +N V+ + + ++ + + + +
Sbjct: 21 HGEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQ-QVVSRIRAALNAV 78
Query: 885 TITTLKP 891
+ + P
Sbjct: 79 RLLVVDP 85
Score = 29.9 bits (68), Expect = 1.3
Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 737 ENGTGTILHPRRHKERLPLSALLNNPPSY----KVNDCIVRVNNLDCSNVSKRMVLETVR 792
NG G LH + K + + P+ D +V VN + + + V+ +R
Sbjct: 13 PNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIR 72
Query: 793 SSGTSALMVIRRRRV 807
++ + +++
Sbjct: 73 AALNAVRLLVVDPET 87
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural
protein-hydrolase complex, peptide binding protei; NMR
{Homo sapiens}
Length = 112
Score = 75.2 bits (185), Expect = 3e-16
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
Query: 1105 PGLRQNKRNSLPDYCCSHKPHPGELRRVHIDK-SVEPLGIQIQ--CLDSGGVFVSTVSEH 1161
+ + + + +R+V + K E LGI I + +S +
Sbjct: 4 HHHHHHHSSGHIEGRHMENLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPG 63
Query: 1162 SLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQY 1208
A + G L VGD +L V G+N+R ++ A ++L Q I V Y
Sbjct: 64 QPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVY 111
Score = 63.2 bits (154), Expect = 5e-12
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Query: 1221 SSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAG- 1277
S E + R +++ LGIS+ GG + V I + + G G
Sbjct: 12 SGHIEGRHMENLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGG 71
Query: 1278 LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQY 1317
L GD IL NG +LR +EA L++ ++ Y
Sbjct: 72 LHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVY 111
Score = 50.9 bits (122), Expect = 9e-08
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 261
G + I +I PG A + G L VGD +L++N + E + +LS +
Sbjct: 48 GKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHK-EAVTILSQQRGEIE 106
Query: 262 IT 263
Sbjct: 107 FE 108
Score = 50.9 bits (122), Expect = 9e-08
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 885
G + I +I PG A + G L VGD +L++N + E + +LS +
Sbjct: 48 GKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHK-EAVTILSQQRGEIE 106
Query: 886 IT 887
Sbjct: 107 FE 108
Score = 35.5 bits (82), Expect = 0.027
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 9/78 (11%)
Query: 37 LQLHSVSHNYSHDSAIDTDLQEWDTEVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSI 96
H H+ H + + + + L +E LG+ + GG++ + I
Sbjct: 3 HHHHHHHHSSGHIEGRHMENLYFQ-GIRKVLLLK-EDHEGLGISITGGKE-----HGVPI 55
Query: 97 YVSNIVKGSV--TDGKLK 112
+S I G G L
Sbjct: 56 LISEIHPGQPADRCGGLH 73
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 75.6 bits (186), Expect = 3e-16
Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 21/138 (15%)
Query: 1104 SPGLRQNKRNSLPDYCCSHKPHPGELRRVHIDKS-VEPLGIQIQCLDSGG------VFVS 1156
S G ++R++L H G+ ++V++ LG+ I+ GG ++++
Sbjct: 2 SSGSSGDRRSTL------HLLQGGDEKKVNLVLGDGRSLGLTIR----GGAEYGLGIYIT 51
Query: 1157 TVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQY---SPDKY 1213
V S A GL+VGDQ+LEV G + + + A +L+ + + + V+ P
Sbjct: 52 GVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRH-LILTVKDVGRLPHAR 110
Query: 1214 HELEGSGSSSAENESVSG 1231
++ + ++ + SG
Sbjct: 111 TTVDETKWIASSSGPSSG 128
Score = 73.3 bits (180), Expect = 3e-15
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 1218 GSGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYS 1275
SGSS ++ G+ + + + +LG+++ GG +GIY+ V GS
Sbjct: 2 SSGSSGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEG 61
Query: 1276 AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQY 1317
+GL+ GD+ILE NG +EA L K + + + +
Sbjct: 62 SGLKVGDQILEVNGRSFLNILHDEAV-RLLKSSRHLILTVKD 102
Score = 44.8 bits (106), Expect = 2e-05
Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 39/118 (33%)
Query: 832 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 891
G+YI + PGS A G L VGD++L +N R+ +
Sbjct: 47 GIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNIL----------------------- 82
Query: 892 TSLGEHSPRVHRKSVN--SSTQTMPLYVRYGDQPPPDSYQVPKTSTKSHDPAKPSPSS 947
H ++V S++ + L V+ + P V +T + PSS
Sbjct: 83 ----------HDEAVRLLKSSRHLILTVKDVGRLPHARTTVDETKW---IASSSGPSS 127
Score = 42.9 bits (101), Expect = 9e-05
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 208 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 244
G+YI + PGS A G L VGD++L +N R+ +
Sbjct: 47 GIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNIL 82
Score = 34.0 bits (78), Expect = 0.11
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRV 807
KV D I+ VN N+ + ++SS L V R+
Sbjct: 65 KVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILTVKDVGRL 106
Score = 30.2 bits (68), Expect = 2.5
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 71 LSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSVTD 108
L +LGL + GG + IY++ + GS +
Sbjct: 28 LGDGRSLGLTIRGGAE-----YGLGIYITGVDPGSEAE 60
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 74.4 bits (183), Expect = 4e-16
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Query: 1124 PHPGELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINM 1183
P GE ++ I + + G I C V V V A + GLQ D +L++ +
Sbjct: 11 PENGEKLQITIRRGKDGFGFTICC--DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV 68
Query: 1184 RSATYQLAASVLRQCGNSITMLVQYSP 1210
A +R C + I +LV
Sbjct: 69 EHWKCVELAHEIRSCPSEIILLVWRVS 95
Score = 57.4 bits (139), Expect = 4e-10
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 1218 GSGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG 1277
GS SS E + +GE + I R G ++ + + V +V SG AG
Sbjct: 1 GSSGSSGEGD----PENGEKLQITIR-RGKDGFGFTICCDS--PVRVQAVDSGGPAERAG 53
Query: 1278 LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 1314
L+ D +L+ N + E A+E+ ++ +L
Sbjct: 54 LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILL 90
Score = 43.6 bits (103), Expect = 3e-05
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 202 GLTL--ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 259
G T+ +S + + + G A + G L D VL +N R V+ E + P
Sbjct: 29 GFTICCDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHW-KCVELAHEIRSCPSE 86
Query: 260 LTITTLKP 267
+ + +
Sbjct: 87 IILLVWRV 94
Score = 43.6 bits (103), Expect = 3e-05
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 826 GLTL--ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 883
G T+ +S + + + G A + G L D VL +N R V+ E + P
Sbjct: 29 GFTICCDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHW-KCVELAHEIRSCPSE 86
Query: 884 LTITTLKP 891
+ + +
Sbjct: 87 IILLVWRV 94
Score = 37.0 bits (86), Expect = 0.005
Identities = 5/40 (12%), Positives = 18/40 (45%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRR 805
+ D ++++N + + +RS + ++++ R
Sbjct: 55 QQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRV 94
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 75.2 bits (185), Expect = 4e-16
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 1130 RRVHIDKS-VEPLGIQI---QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMR 1184
V I K+ LGI + + + + + S+ + G L GD +L + G +M
Sbjct: 17 LMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSME 76
Query: 1185 SATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSA 1224
+ A +L + + + P L S S+
Sbjct: 77 HCSLLEATKLLASISEKVRLEILPVPQSQRPLRPSSGPSS 116
Score = 68.2 bits (167), Expect = 1e-13
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 8/119 (6%)
Query: 1218 GSGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG---NAVGIYVHSVQSGSLGY 1274
GS SS + + + P + I S LGISL N I + ++ S+
Sbjct: 1 GSSGSSGD----TVANASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVD 56
Query: 1275 SAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKPGDS 1332
+G L GD IL +GT + + EA LA ++KV + + ++ G S
Sbjct: 57 RSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQRPLRPSSGPS 115
Score = 55.5 bits (134), Expect = 3e-09
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 192 GLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMA 251
G+ L + +S + I +I P S+ + G+L GD +LSI+ +++ S E
Sbjct: 30 GISLTTTSLRN---KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLL-EATK 85
Query: 252 LLSDSPDVLTIT 263
LL+ + + +
Sbjct: 86 LLASISEKVRLE 97
Score = 54.8 bits (132), Expect = 5e-09
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887
+S + I +I P S+ + G+L GD +LSI+ +++ S E LL+ + + +
Sbjct: 41 KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLL-EATKLLASISEKVRLE 97
Score = 36.3 bits (84), Expect = 0.016
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 72 SPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSVTD--GKLK 112
+P ALG+ L N S I + I SV D G L
Sbjct: 24 TPGSALGISLTTTSLR----NKSVITIDRIKPASVVDRSGALH 62
Score = 29.7 bits (67), Expect = 2.8
Identities = 7/50 (14%), Positives = 15/50 (30%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARSLVTT 815
D I+ ++ + S + + S + I R L +
Sbjct: 62 HPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQRPLRPS 111
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 74.2 bits (183), Expect = 5e-16
Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 13/106 (12%)
Query: 1124 PHPGELRRVHIDKSVEPLGIQIQ----CLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEV 1178
V + + G+ + + V + + A + G L+VGD +L +
Sbjct: 7 GQASGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHI 66
Query: 1179 CGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSA 1224
G + + T+ A +R G + ++++ SG SS
Sbjct: 67 NGESTQGLTHAQAVERIRAGGPQLHLVIRRPL--------SGPSSG 104
Score = 57.3 bits (139), Expect = 5e-10
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 6/98 (6%)
Query: 1230 SGRGSGEPRFLMIETRKCSN-LGISLVGG----NAVGIYVHSVQSGSLGYSAG-LRTGDR 1283
SG +E + G++L GG + V + G L GD
Sbjct: 3 SGSSGQASGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDL 62
Query: 1284 ILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVER 1321
+L NG + T +A + ++ ++ + +
Sbjct: 63 VLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLSG 100
Score = 56.5 bits (137), Expect = 9e-10
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
++ L + + A + G L VGD VL IN + GL+ A + + + L +
Sbjct: 37 DTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHA-QAVERIRAGGPQLHLVIR 95
Query: 266 KPTS 269
+P S
Sbjct: 96 RPLS 99
Score = 56.5 bits (137), Expect = 9e-10
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
++ L + + A + G L VGD VL IN + GL+ A + + + L +
Sbjct: 37 DTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHA-QAVERIRAGGPQLHLVIR 95
Query: 890 KPTS 893
+P S
Sbjct: 96 RPLS 99
Score = 39.2 bits (92), Expect = 0.001
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARS 811
+V D ++ +N ++ +E +R+ G +VIRR G S
Sbjct: 58 EVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLSGPSS 103
Score = 37.7 bits (88), Expect = 0.003
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 77 LGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
GL L GGRD D+ + V ++K G+L+
Sbjct: 24 FGLTLGGGRD---VAGDTPLAVRGLLKDGPAQRCGRLE 58
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3
chimera; PDZ domain, PDZ binding, GIRK3 regulation, early
endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A 3qgl_A
Length = 107
Score = 74.3 bits (183), Expect = 6e-16
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 15/106 (14%)
Query: 1125 HPGELRRVHIDKSVEPLGIQIQ--------------CLDSGGVFVSTVSEHSLASQVGLQ 1170
H G R V I KS G ++ L + VS V A + G++
Sbjct: 3 HGGSPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVR 62
Query: 1171 VGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHEL 1216
GD++LEV G+N+ AT++ ++R + + V S + ++
Sbjct: 63 KGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVL-SVESESKV 107
Score = 64.3 bits (157), Expect = 2e-12
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 16/109 (14%)
Query: 1231 GRGSGEPRFLMIETRKCSNLGISLVGG--------------NAVGIYVHSVQSGSLGYSA 1276
G G PR + I + S G ++ G A +V +V G A
Sbjct: 1 GSHGGSPRVVRIV-KSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRA 59
Query: 1277 GLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEV 1325
G+R GDRILE NG ++ AT ++ + ++ + SVE ++V
Sbjct: 60 GVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVL-SVESESKV 107
Score = 46.6 bits (111), Expect = 3e-06
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 201 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 260
+G ++ + PG A + G + GDR+L +N V+G + + + L+ L
Sbjct: 37 NGELYAPLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHK-QVVDLIRAGEKEL 94
Query: 261 TITTLKPTS 269
+T L S
Sbjct: 95 ILTVLSVES 103
Score = 46.6 bits (111), Expect = 3e-06
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 825 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 884
+G ++ + PG A + G + GDR+L +N V+G + + + L+ L
Sbjct: 37 NGELYAPLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHK-QVVDLIRAGEKEL 94
Query: 885 TITTLKPTS 893
+T L S
Sbjct: 95 ILTVLSVES 103
Score = 31.6 bits (72), Expect = 0.47
Identities = 6/40 (15%), Positives = 19/40 (47%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRR 805
+ D I+ VN ++ + + V++ +R+ ++ +
Sbjct: 62 RKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSV 101
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 74.4 bits (183), Expect = 7e-16
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 1221 SSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG-----------NAVGIYVHSVQS 1269
S S +PR + + +LGIS+VGG GI++ V
Sbjct: 9 SGVDLGTENLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLE 68
Query: 1270 GSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSV 1319
S G L+ GDRI+E +G DLR A+ E+A + K + V + Q +
Sbjct: 69 DSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSII 119
Score = 72.5 bits (178), Expect = 3e-15
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 1124 PHPGELRRVHIDK-SVEPLGIQI-----------QCLDSGGVFVSTVSEHSLASQVG-LQ 1170
+ RRV + + + LGI I G+F+ V E S A + G L+
Sbjct: 20 FQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLK 79
Query: 1171 VGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQY 1208
GD+++EV G+++R A+++ A +R+ GN + +VQ
Sbjct: 80 PGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 117
Score = 50.1 bits (120), Expect = 2e-07
Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 263
G++I + S A K G+L GDR++ ++ + S + + + + + +
Sbjct: 58 MRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHE-QAVEAIRKAGNPVVFM 114
Score = 50.1 bits (120), Expect = 2e-07
Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887
G++I + S A K G+L GDR++ ++ + S + + + + + +
Sbjct: 58 MRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHE-QAVEAIRKAGNPVVFM 114
Score = 38.6 bits (90), Expect = 0.002
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 39 LHSVSHNYSHDSAIDTDLQEWDTEVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSS--- 95
+H H+ S +L + + L P+++LG+ +VGGR ++
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMQPRRVELWR-EPSKSLGISIVGGRGMGSRLSNGEVMR 59
Query: 96 -IYVSNIVKGSV--TDGKLK 112
I++ ++++ S +G LK
Sbjct: 60 GIFIKHVLEDSPAGKNGTLK 79
Score = 33.2 bits (76), Expect = 0.20
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRR 805
K D IV V+ +D + S +E +R +G + +++
Sbjct: 79 KPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI 118
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein
25, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 74.4 bits (183), Expect = 8e-16
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 1121 SHKPHPGELRRVHIDKSVEPLGIQI-------QCLDSGGVFVSTVSEHSLASQVG-LQVG 1172
+ +++ + LG I + G++VS + E+ A+ G LQ G
Sbjct: 10 GRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEG 69
Query: 1173 DQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSA 1224
D++L V G ++++ +Q A + R G ++++ VQ+ + SG SS
Sbjct: 70 DKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNG-PISGPSSG 120
Score = 64.4 bits (157), Expect = 2e-12
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 13/121 (10%)
Query: 1218 GSGSSSAENESVSGRGSGEPRFLMIETRKCSN-LGISLVGG-------NAVGIYVHSVQS 1269
GS SS ++GR I + + LG ++VGG N GIYV ++
Sbjct: 1 GSSGSS----GMNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKE 56
Query: 1270 GSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDK 1328
G L+ GD+IL NG DL+ ++A V++ Q+ ++ N
Sbjct: 57 NGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPISG 116
Query: 1329 P 1329
P
Sbjct: 117 P 117
Score = 49.0 bits (117), Expect = 6e-07
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 263
+SG+Y+ +I AA +G L GD++LS+N + + L + + L ++ +++
Sbjct: 46 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQ-DAVDLFRNAGYAVSLR 102
Score = 49.0 bits (117), Expect = 6e-07
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887
+SG+Y+ +I AA +G L GD++LS+N + + L + + L ++ +++
Sbjct: 46 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQ-DAVDLFRNAGYAVSLR 102
Score = 44.0 bits (104), Expect = 4e-05
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 47 SHDSAIDTDLQEWDTEVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV 106
S S+ ++ ++NLT LG +VGG D + NDS IYVS I +
Sbjct: 2 SSGSSGMNGRVDYLVTEEEINLTR--GPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGA 59
Query: 107 --TDGKLK 112
DG+L+
Sbjct: 60 AALDGRLQ 67
Score = 36.6 bits (85), Expect = 0.011
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+ D I+ VN D N+ + ++ R++G + + ++ R
Sbjct: 67 QEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRL 107
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain,
PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 73.1 bits (180), Expect = 1e-15
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 1130 RRVHIDKSVEPLGIQIQC-LDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATY 1188
R + K G + G F+ +V S A GL+ D+++EV G+ M +
Sbjct: 11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQH 70
Query: 1189 QLAASVLRQCGNSITMLVQYS-PDKYHE 1215
S +R G+ +LV D++ +
Sbjct: 71 GDVVSAIRAGGDETKLLVVDRETDEFFK 98
Score = 61.6 bits (150), Expect = 1e-11
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 12/100 (12%)
Query: 1236 EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRA 1294
PR ++ + S G +L + G ++ SV S ++GLR DRI+E NG +
Sbjct: 9 RPRLCTMK-KGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEG 67
Query: 1295 ATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKPGDSFY 1334
+ + D+ +L V D+ D F+
Sbjct: 68 KQHGDVVSAIRAGGDETKLL----------VVDRETDEFF 97
Score = 45.0 bits (107), Expect = 8e-06
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 201 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 260
H + G +I + P S A G L DR++ +N ++G + ++ + D
Sbjct: 27 HSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHG-DVVSAIRAGGDET 84
Query: 261 TITTLKP 267
+ +
Sbjct: 85 KLLVVDR 91
Score = 45.0 bits (107), Expect = 8e-06
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 825 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 884
H + G +I + P S A G L DR++ +N ++G + ++ + D
Sbjct: 27 HSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHG-DVVSAIRAGGDET 84
Query: 885 TITTLKP 891
+ +
Sbjct: 85 KLLVVDR 91
Score = 30.4 bits (69), Expect = 1.3
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTS-ALMVIRRR 805
+ D IV VN + V+ +R+ G L+V+ R
Sbjct: 52 RAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRE 92
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 74.0 bits (182), Expect = 1e-15
Identities = 18/105 (17%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 1124 PHPGELRRVHIDK-SVEPLGIQIQ--CLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVC 1179
P +V + K + +GI I +++ V +++ A+ G + GD++ V
Sbjct: 15 GIPTVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVN 74
Query: 1180 GINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSA 1224
G +++ T A ++++ +T+ +LE +
Sbjct: 75 GRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPKQLEVLFNGPG 119
Score = 62.9 bits (153), Expect = 9e-12
Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 1234 SGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGT 1290
P + ++ + +GIS+ GG +Y+ V + G + GD I NG
Sbjct: 17 PTVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGR 76
Query: 1291 DLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVK 1326
++ T E A + + +VT+ +++
Sbjct: 77 SIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPKQLE 112
Score = 53.2 bits (128), Expect = 2e-08
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 261
G LYI ++ + AA +G++A GD + +N R++ G + E ++ + +T
Sbjct: 40 GAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKV-EVAKMIQEVKGEVT 98
Query: 262 IT 263
I
Sbjct: 99 IH 100
Score = 53.2 bits (128), Expect = 2e-08
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 885
G LYI ++ + AA +G++A GD + +N R++ G + E ++ + +T
Sbjct: 40 GAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKV-EVAKMIQEVKGEVT 98
Query: 886 IT 887
I
Sbjct: 99 IH 100
Score = 32.4 bits (74), Expect = 0.41
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 7/43 (16%)
Query: 72 SPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
+G+ + GG +Y+ + + DG +
Sbjct: 28 DAQNLIGISIGGGAQ-----YCPCLYIVQVFDNTPAALDGTVA 65
Score = 31.7 bits (72), Expect = 0.78
Identities = 7/49 (14%), Positives = 15/49 (30%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARSLVT 814
D I VN +K V + ++ + + + + L
Sbjct: 65 AAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPKQLEV 113
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 73.2 bits (180), Expect = 1e-15
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 13/97 (13%)
Query: 1125 HPGELRRVHIDK-SVEPLGIQI-----------QCLDSGGVFVSTVSEHSLASQVG-LQV 1171
+ RRV + + + LGI I G+F+ V E S A + G L+
Sbjct: 1 QSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKP 60
Query: 1172 GDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQY 1208
GD+++EV G+++R A+++ A +R+ GN + +VQ
Sbjct: 61 GDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 97
Score = 72.4 bits (178), Expect = 2e-15
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 1234 SGEPRFLMIETRKCSNLGISLVGG-----------NAVGIYVHSVQSGSLGYSAG-LRTG 1281
S +PR + + +LGIS+VGG GI++ V S G L+ G
Sbjct: 2 SMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPG 61
Query: 1282 DRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVER 1321
DRI+E +G DLR A+ E+A + K + V + Q +
Sbjct: 62 DRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIST 101
Score = 50.4 bits (121), Expect = 1e-07
Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
G++I + S A K G+L GDR++ ++ + S + + + + + +
Sbjct: 38 MRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHE-QAVEAIRKAGNPVVFMVQ 96
Query: 266 KPTS 269
S
Sbjct: 97 SIIS 100
Score = 50.4 bits (121), Expect = 1e-07
Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
G++I + S A K G+L GDR++ ++ + S + + + + + +
Sbjct: 38 MRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHE-QAVEAIRKAGNPVVFMVQ 96
Query: 890 KPTS 893
S
Sbjct: 97 SIIS 100
Score = 35.4 bits (82), Expect = 0.021
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 73 PNEALGLELVGGRDDPFYPNDSS----IYVSNIVKGSV--TDGKLK 112
P+++LG+ +VGGR ++ I++ ++++ S +G LK
Sbjct: 14 PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLK 59
Score = 33.5 bits (77), Expect = 0.11
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRR 805
K D IV V+ +D + S +E +R +G + +++
Sbjct: 59 KPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI 98
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 76.4 bits (187), Expect = 2e-15
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 1130 RRVHIDKSVEPLGIQIQC-LDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATY 1188
R + K G + G F+ +V S A GL+ D+++EV G+ M +
Sbjct: 11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQH 70
Query: 1189 QLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENES 1228
S +R G+ +LV + S E+ +
Sbjct: 71 GDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLN 110
Score = 59.4 bits (143), Expect = 1e-09
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Query: 1236 EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRA 1294
PR ++ + S G +L + G ++ SV S ++GLR DRI+E NG +
Sbjct: 9 RPRLCTMK-KGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEG 67
Query: 1295 ATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKPGDS 1332
+ + D+ +L K + S
Sbjct: 68 KQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPS 105
Score = 52.5 bits (125), Expect = 2e-07
Identities = 24/168 (14%), Positives = 57/168 (33%), Gaps = 3/168 (1%)
Query: 825 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 884
H + G +I + P S A G L DR++ +N ++G + ++ + D
Sbjct: 27 HSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHG-DVVSAIRAGGDET 84
Query: 885 TITTLKPTSLGEHSPRVHRKSVNSSTQTMPLYVRYGDQPPPDSYQ-VPKTSTKSHDPAKP 943
+ + + S +P+ G+ +S + + + + +S PA
Sbjct: 85 KLLVVDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSREALAEAALESPRPALV 144
Query: 944 SPSSSGGGGKWDSLREKMQGVRRRGGGEEGKRSNRNSSPPVTFEQEQV 991
+SS + +S + + + + +E+
Sbjct: 145 RSASSDTSEELNSQDSPPKQDSTAPSSTSSSDPILDFNISLAMAKERA 192
Score = 42.1 bits (98), Expect = 7e-04
Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 201 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 260
H + G +I + P S A G L DR++ +N ++G + ++ + D
Sbjct: 27 HSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHG-DVVSAIRAGGDET 84
Query: 261 TITTLKPTSLGEHSPRVHRKSVNSSTQTMPLYVRQHNETVRR 302
+ + + + + R + PL V N +++
Sbjct: 85 KLLVVDRET--DEFFKKCRVIPSQEHLNGPLPVPFTNGEIQK 124
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 72.7 bits (179), Expect = 2e-15
Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 1128 ELRRVHIDKSVEPLGIQI-------QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVC 1179
+ + +++ LG I D G+F++ + A+ G L V D +L V
Sbjct: 4 KYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVN 63
Query: 1180 GINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHE 1215
+++ + A L++ G + ++V+ E
Sbjct: 64 EVDVSEVVHSRAVEALKEAGPVVRLVVRRRQPPPEE 99
Score = 57.3 bits (139), Expect = 4e-10
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 9/93 (9%)
Query: 1242 IETRKCSN-LGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 1292
I + ++ LG S+ GG + GI++ + G G L D +L N D+
Sbjct: 8 IVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDV 67
Query: 1293 RAATAEEAAYELAKPADKVTVLAQYSVERYNEV 1325
A L + V ++ + E
Sbjct: 68 SEVVHSRAVEALKEAGPVVRLVVRRRQPPPEET 100
Score = 49.2 bits (118), Expect = 3e-07
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 263
+ G++I KI PG AA +G L V D VL +N V + + + L ++ V+ +
Sbjct: 33 DPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHS-RAVEALKEAGPVVRLV 89
Score = 49.2 bits (118), Expect = 3e-07
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887
+ G++I KI PG AA +G L V D VL +N V + + + L ++ V+ +
Sbjct: 33 DPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHS-RAVEALKEAGPVVRLV 89
Score = 45.0 bits (107), Expect = 1e-05
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
N LG + GG D+P P+D I+++ I+ G DG+L
Sbjct: 14 NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLG 54
Score = 40.8 bits (96), Expect = 3e-04
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
VNDC++RVN +D S V +E ++ +G +V+RRR+
Sbjct: 54 GVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRRQ 94
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein,
transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Length = 91
Score = 71.9 bits (177), Expect = 2e-15
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 1130 RRVHIDKSVEPLGIQIQCL-DSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATY 1188
+ + K G + + G F+ V + A GL+ D ++EV G+N+ Y
Sbjct: 5 KLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPY 64
Query: 1189 QLAASVLRQCGNSITMLV 1206
+ ++ G ++T+LV
Sbjct: 65 EKVVDRIQSSGKNVTLLV 82
Score = 60.0 bits (146), Expect = 3e-11
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 1234 SGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 1292
S +P+ + + + G L G ++ VQ G AGL D I+E NG ++
Sbjct: 1 SMKPKLCRLA-KGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNV 59
Query: 1293 RAATAEEAAYELAKPADKVTVL 1314
E+ + VT+L
Sbjct: 60 LDEPYEKVVDRIQSSGKNVTLL 81
Score = 42.3 bits (100), Expect = 6e-05
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 201 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 260
+ + G +I ++ G A G L D ++ +N V + + + S +
Sbjct: 21 NAIRGLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYE-KVVDRIQSSGKNV 78
Query: 261 TITTLKPTS 269
T+ +
Sbjct: 79 TLLVCGKKA 87
Score = 42.3 bits (100), Expect = 6e-05
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 825 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 884
+ + G +I ++ G A G L D ++ +N V + + + S +
Sbjct: 21 NAIRGLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYE-KVVDRIQSSGKNV 78
Query: 885 TITTLKPTS 893
T+ +
Sbjct: 79 TLLVCGKKA 87
Score = 29.2 bits (66), Expect = 3.2
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTS-ALMVIRR 804
+ D I+ VN ++ + V++ ++SSG + L+V +
Sbjct: 46 EDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGK 85
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 107
Score = 72.4 bits (178), Expect = 2e-15
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Query: 1124 PHPGELRRVHIDKSVEPLGIQI----------QCLDSGGVFVSTVSEHSLASQVG-LQVG 1172
G+ + + + LG I S G+FVS + + A++ G LQ+
Sbjct: 4 GSSGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIH 63
Query: 1173 DQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211
D+++EV G ++ AT+ A + I + V
Sbjct: 64 DRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTS 102
Score = 59.7 bits (145), Expect = 7e-11
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 1234 SGEPRFLMIETRKCSNLGISLVGG----------NAVGIYVHSVQSGSLGYSAG-LRTGD 1282
SG+ L++ R +LG +++GG ++ GI+V + G L+ D
Sbjct: 6 SGKSLTLVLH-RDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHD 64
Query: 1283 RILEYNGTDLRAATAEEAAYELAKPADKVTVLAQY 1317
RI+E NG DL AT ++A + + V
Sbjct: 65 RIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLR 99
Score = 50.1 bits (120), Expect = 2e-07
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 196 NNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSD 255
+ +H + G+++ KI AAKEG L + DR++ +N R + + + +
Sbjct: 30 PSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHD-QAVEAFKT 88
Query: 256 SPDVLTITTLKPTS 269
+ + + + L+ TS
Sbjct: 89 AKEPIVVQVLRRTS 102
Score = 50.1 bits (120), Expect = 2e-07
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 820 NNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSD 879
+ +H + G+++ KI AAKEG L + DR++ +N R + + + +
Sbjct: 30 PSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHD-QAVEAFKT 88
Query: 880 SPDVLTITTLKPTS 893
+ + + + L+ TS
Sbjct: 89 AKEPIVVQVLRRTS 102
Score = 37.4 bits (87), Expect = 0.004
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARS 811
+++D I+ VN D S + +E +++ ++ + RR G S
Sbjct: 61 QIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSGPSS 106
Score = 37.0 bits (86), Expect = 0.008
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 74 NEALGLELVGGRD---DPFYPNDSSIYVSNIVKGSV--TDGKLK 112
+ +LG ++GGR + + I+VS IV +G L+
Sbjct: 18 SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQ 61
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 72.0 bits (177), Expect = 2e-15
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 1128 ELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSAT 1187
R++ I + + G I C V V V A + GLQ D +L++ +
Sbjct: 3 RYRQITIPRGKDGFGFTICC--DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWK 60
Query: 1188 YQLAASVLRQCGNSITMLVQYSP 1210
A +R C + I +LV
Sbjct: 61 CVELAHEIRSCPSEIILLVWRMV 83
Score = 56.6 bits (137), Expect = 6e-10
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 1234 SGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLR 1293
S R + I R G ++ + + V +V SG AGL+ D +L+ N +
Sbjct: 1 SMRYRQITIP-RGKDGFGFTICCDS--PVRVQAVDSGGPAERAGLQQLDTVLQLNERPVE 57
Query: 1294 AATAEEAAYELAKPADKVTVL 1314
E A+E+ ++ +L
Sbjct: 58 HWKCVELAHEIRSCPSEIILL 78
Score = 47.0 bits (112), Expect = 2e-06
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 202 GLTL--ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 259
G T+ +S + + + G A + G L D VL +N R V+ E + P
Sbjct: 17 GFTICCDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHW-KCVELAHEIRSCPSE 74
Query: 260 LTITTLKPTSLGEHSP 275
+ + + + P
Sbjct: 75 IILLVWRMVPQVKPGP 90
Score = 47.0 bits (112), Expect = 2e-06
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 826 GLTL--ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 883
G T+ +S + + + G A + G L D VL +N R V+ E + P
Sbjct: 17 GFTICCDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHW-KCVELAHEIRSCPSE 74
Query: 884 LTITTLKPTSLGEHSP 899
+ + + + P
Sbjct: 75 IILLVWRMVPQVKPGP 90
Score = 37.0 bits (86), Expect = 0.006
Identities = 5/40 (12%), Positives = 18/40 (45%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRR 805
+ D ++++N + + +RS + ++++ R
Sbjct: 43 QQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRM 82
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 72.5 bits (178), Expect = 3e-15
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 1125 HPGELRRVHIDKS-VEPLGIQIQCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGIN 1182
++ V I+K+ PLG ++ + V +S + + A + G L GD++LE+ GI
Sbjct: 22 GGETVKIVRIEKARDIPLGATVRN-EMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIE 80
Query: 1183 MRSATYQLAASVLRQCGNSITMLVQYSPD 1211
+R +L ++T ++ S
Sbjct: 81 IRGKDVNEVFDLLSDMHGTLTFVLIPSSG 109
Score = 57.1 bits (138), Expect = 8e-10
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 5/101 (4%)
Query: 1218 GSGSSSAENESVSGRGSGEPRFL-MIETRKCSN--LGISLVGGNAVGIYVHSVQSGSLGY 1274
GS + G + ++ K + LG ++ + + + G
Sbjct: 4 GSSGPITDERVYESIGHYGGETVKIVRIEKARDIPLGATVRNEM-DSVIISRIVKGGAAE 62
Query: 1275 SAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 1314
+G L GD +LE NG ++R E L+ +T +
Sbjct: 63 KSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFV 103
Score = 53.6 bits (129), Expect = 1e-08
Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 202 GLTL---ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD 258
G T+ + I +I G A K G L GD VL IN + G E LLSD
Sbjct: 40 GATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVN-EVFDLLSDMHG 98
Query: 259 VLTITTLKPTS 269
LT L P+S
Sbjct: 99 TLTF-VLIPSS 108
Score = 53.6 bits (129), Expect = 1e-08
Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 826 GLTL---ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD 882
G T+ + I +I G A K G L GD VL IN + G E LLSD
Sbjct: 40 GATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVN-EVFDLLSDMHG 98
Query: 883 VLTITTLKPTS 893
LT L P+S
Sbjct: 99 TLTF-VLIPSS 108
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor
protein, SR-BI, signaling protein; 1.30A {Mus musculus}
PDB: 3r69_A*
Length = 95
Score = 71.5 bits (176), Expect = 3e-15
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 1126 PGELRRVHIDKSVEPLGIQIQC-LDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMR 1184
P + R V I K G ++ + G + + S A GL+ D ++ V G ++
Sbjct: 3 PHQPRVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVE 62
Query: 1185 SATYQLAASVLRQCGNSITMLVQYSP-DKYH 1214
+ + ++R+ G+ T+LV ++ H
Sbjct: 63 ALDHDGVVEMIRKGGDQTTLLVLDKELERPH 93
Score = 56.5 bits (137), Expect = 6e-10
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 12/100 (12%)
Query: 1236 EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRA 1294
+PR ++I+ + + G L G G + ++ GS +AGL+ D ++ NG + A
Sbjct: 5 QPRVVVIK-KGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEA 63
Query: 1295 ATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKPGDSFY 1334
+ + K D+ T+L V DK + +
Sbjct: 64 LDHDGVVEMIRKGGDQTTLL----------VLDKELERPH 93
Score = 48.0 bits (115), Expect = 6e-07
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 201 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 260
+ G I I PGS A G L D V+++N ++V+ L + ++ D
Sbjct: 23 RAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDH-DGVVEMIRKGGDQT 80
Query: 261 TITTLKP 267
T+ L
Sbjct: 81 TLLVLDK 87
Score = 48.0 bits (115), Expect = 6e-07
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 825 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 884
+ G I I PGS A G L D V+++N ++V+ L + ++ D
Sbjct: 23 RAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDH-DGVVEMIRKGGDQT 80
Query: 885 TITTLKP 891
T+ L
Sbjct: 81 TLLVLDK 87
Score = 29.6 bits (67), Expect = 2.4
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRR 805
K ND +V VN + V+E +R G +++ +
Sbjct: 48 KNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDK 87
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 71.6 bits (176), Expect = 4e-15
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 1128 ELRRVHIDK--SVEPLGIQI-QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINM 1183
E+ +V + K S E LGI++ + D GVF+ + E LA+Q G L D++L + G ++
Sbjct: 3 EILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDL 62
Query: 1184 RSATYQLAASVLRQCGNSITMLVQYSPDKYHEL 1216
+ T +LAA +++ G + + + EL
Sbjct: 63 KYGTPELAAQIIQASGERVNLTIARPGKPEIEL 95
Score = 61.9 bits (151), Expect = 1e-11
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 1250 LGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP 1307
LGI LV + G+++ + G L G L + DR+L NG DL+ T E AA +
Sbjct: 18 LGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQAS 77
Query: 1308 ADKVTVL 1314
++V +
Sbjct: 78 GERVNLT 84
Score = 54.2 bits (131), Expect = 5e-09
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
E G++I + G LAA++G L+ DRVL+IN + + ++ S + + +T
Sbjct: 28 EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPE-LAAQIIQASGERVNLTIA 86
Query: 266 KPTS 269
+P
Sbjct: 87 RPGK 90
Score = 54.2 bits (131), Expect = 5e-09
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
E G++I + G LAA++G L+ DRVL+IN + + ++ S + + +T
Sbjct: 28 EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPE-LAAQIIQASGERVNLTIA 86
Query: 890 KPTS 893
+P
Sbjct: 87 RPGK 90
Score = 41.1 bits (97), Expect = 2e-04
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 62 EVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLKK 113
E+L + L E LG++LV D+P +++ ++++G + DG+L
Sbjct: 3 EILQVALHKRDSGEQLGIKLVRRTDEP------GVFILDLLEGGLAAQDGRLSS 50
Score = 35.3 bits (82), Expect = 0.018
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
ND ++ +N D + + + +++SG + I R
Sbjct: 49 SSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPG 89
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 72.0 bits (177), Expect = 5e-15
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 1125 HPGELRRVHIDKSVEPLGIQI-----QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEV 1178
G+ + + K E LG I S ++V + A Q G L+ GD+L+EV
Sbjct: 8 KVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 67
Query: 1179 CGINMRSATYQLAASVLRQCGNS--ITMLVQYSPDKYHELEGSG 1220
G+++ + + S+LR +++LV + +H E +
Sbjct: 68 NGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAFHPREMNA 111
Score = 57.3 bits (139), Expect = 5e-10
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 1240 LMIETRKCSN-LGISLVGGN-----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 1292
L I+ +K + LG S+ + + IYV ++ G L+ GDR++E NG DL
Sbjct: 13 LNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDL 72
Query: 1293 RAATAEEAAYEL--AKPADKVTVLAQYSVERYNE 1324
+ EE L K V++L E ++
Sbjct: 73 AGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAFHP 106
Score = 50.8 bits (122), Expect = 1e-07
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 263
+ +Y+ I P A ++G L GDR++ +N + G S E ++LL + T++
Sbjct: 38 SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQE-EVVSLLRSTKMEGTVS 94
Score = 50.8 bits (122), Expect = 1e-07
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887
+ +Y+ I P A ++G L GDR++ +N + G S E ++LL + T++
Sbjct: 38 SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQE-EVVSLLRSTKMEGTVS 94
Score = 29.6 bits (67), Expect = 3.1
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSAL--MVIRRRR 806
K D ++ VN +D + S+ V+ +RS+ +++ R+
Sbjct: 59 KAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQE 101
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 71.2 bits (175), Expect = 6e-15
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 1128 ELRRVHIDKS-VEPLGIQI--------QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLE 1177
+ V +DK+ + GI I + G+F+ + S A G L+VGD++L
Sbjct: 5 LIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILS 64
Query: 1178 VCGINMRSATYQLAASVLRQCGNSITMLVQYSPDK 1212
+ G ++R++T Q ++++ I + +Q + DK
Sbjct: 65 LNGKDVRNSTEQAVIDLIKEADFKIELEIQ-TFDK 98
Score = 60.8 bits (148), Expect = 2e-11
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Query: 1250 LGISLVGG--------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEA 1300
GI +V G GI++ + S + G L+ GDRIL NG D+R +T +
Sbjct: 19 FGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAV 78
Query: 1301 AYELAKPADKVTVLAQYSVERYNE 1324
+ + K+ + ++ +++
Sbjct: 79 IDLIKEADFKIELE----IQTFDK 98
Score = 55.8 bits (135), Expect = 1e-09
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 200 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 259
D T +G++I I P S A G L VGDR+LS+N + V + + L+ ++
Sbjct: 30 DSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQ-AVIDLIKEADFK 88
Query: 260 LTITTLKP 267
+ +
Sbjct: 89 IELEIQTF 96
Score = 55.8 bits (135), Expect = 1e-09
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 824 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 883
D T +G++I I P S A G L VGDR+LS+N + V + + L+ ++
Sbjct: 30 DSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQ-AVIDLIKEADFK 88
Query: 884 LTITTLKP 891
+ +
Sbjct: 89 IELEIQTF 96
Score = 38.8 bits (91), Expect = 0.001
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 72 SPNEALGLELVGGRDDPFY-PNDSSIYVSNIVKGSV--TDGKLK 112
+ ++ G+ +V G + I++ IV S G+LK
Sbjct: 14 TGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLK 57
Score = 33.1 bits (76), Expect = 0.13
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRR 804
KV D I+ +N D N +++ V++ ++ + + I+
Sbjct: 57 KVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 71.2 bits (175), Expect = 6e-15
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 1128 ELRRVHIDKSVEPLGIQI-------QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVC 1179
+++ + LG I + G++VS + E+ A+ G LQ GD++L V
Sbjct: 7 TEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVN 66
Query: 1180 GINMRSATYQLAASVLRQCGNSITMLVQYSPDK 1212
G ++++ +Q A + R G ++++ VQ+ +
Sbjct: 67 GQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLES 99
Score = 58.1 bits (141), Expect = 2e-10
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 1242 IETRKCSN-LGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 1292
I + + LG ++VGG N GIYV ++ G L+ GD+IL NG DL
Sbjct: 11 INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDL 70
Query: 1293 RAATAEEAAYELAKPADKVTVLAQYSVE 1320
+ ++A V++ Q+ +E
Sbjct: 71 KNLLHQDAVDLFRNAGYAVSLRVQHRLE 98
Score = 50.8 bits (122), Expect = 7e-08
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV-LTITT 264
+SG+Y+ +I AA +G L GD++LS+N + + L + V L +
Sbjct: 36 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQH 95
Query: 265 LKPTSL 270
+S+
Sbjct: 96 RLESSI 101
Score = 50.8 bits (122), Expect = 7e-08
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV-LTITT 888
+SG+Y+ +I AA +G L GD++LS+N + + L + V L +
Sbjct: 36 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQH 95
Query: 889 LKPTSL 894
+S+
Sbjct: 96 RLESSI 101
Score = 43.5 bits (103), Expect = 3e-05
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
LG +VGG D + NDS IYVS I + DG+L+
Sbjct: 17 PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQ 57
Score = 37.3 bits (87), Expect = 0.005
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+ D I+ VN D N+ + ++ R++G + + ++ R
Sbjct: 57 QEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRL 97
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 71.2 bits (175), Expect = 6e-15
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 1130 RRVHIDKSVEPLGIQIQC-LDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATY 1188
R V I K G ++ + G + + S A GL+ D ++ V G ++ + +
Sbjct: 8 RVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDH 67
Query: 1189 QLAASVLRQCGNSITMLVQYSP-DKYHELEGSGSSSA 1224
++R+ G+ T+LV + + L SG SS
Sbjct: 68 DGVVEMIRKGGDQTTLLVLDKEAESIYSL--SGPSSG 102
Score = 58.2 bits (141), Expect = 3e-10
Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 12/112 (10%)
Query: 1231 GRGSGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNG 1289
G R ++I+ + + G L G G + ++ GS +AGL+ D ++ NG
Sbjct: 1 GSSGSSGRVVVIK-KGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNG 59
Query: 1290 TDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKPGDSFYMRALFSR 1341
+ A + + K D+ T+L V DK +S Y + S
Sbjct: 60 KSVEALDHDGVVEMIRKGGDQTTLL----------VLDKEAESIYSLSGPSS 101
Score = 47.4 bits (113), Expect = 1e-06
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 201 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 260
+ G I I PGS A G L D V+++N ++V+ L + ++ D
Sbjct: 24 RAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHD-GVVEMIRKGGDQT 81
Query: 261 TITTLKPTS 269
T+ L +
Sbjct: 82 TLLVLDKEA 90
Score = 47.4 bits (113), Expect = 1e-06
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 825 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 884
+ G I I PGS A G L D V+++N ++V+ L + ++ D
Sbjct: 24 RAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHD-GVVEMIRKGGDQT 81
Query: 885 TITTLKPTS 893
T+ L +
Sbjct: 82 TLLVLDKEA 90
Score = 28.9 bits (65), Expect = 4.7
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 724 GGTWPKARSGPVI----ENGTGTILHPRRHKERLPLSALLNNPPSY----KVNDCIVRVN 775
G + R V+ NG G L ++ + + P+ K ND +V VN
Sbjct: 1 GSSGSSGR--VVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVN 58
Query: 776 NLDCSNVSKRMVLETVRSSGTSALMVI 802
+ V+E +R G +++
Sbjct: 59 GKSVEALDHDGVVEMIRKGGDQTTLLV 85
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium, synaptosome,
tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Length = 120
Score = 71.6 bits (176), Expect = 7e-15
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 10/117 (8%)
Query: 1102 VLSPGLRQNKRNSLPDYCCSHKPHPGELRRVHIDK-SVEPLGIQI-----QCLDSGGVFV 1155
+ + + + R V + K + LGI I L +F+
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMGL---RTVEMKKGPTDSLGISIAGGVGSPLGDVPIFI 57
Query: 1156 STVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211
+ + +A+Q L+VGD+++ +CG + T+ A ++L+ SI M V D
Sbjct: 58 AMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGD 114
Score = 58.5 bits (142), Expect = 3e-10
Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 8/108 (7%)
Query: 1221 SSSAENESVSGRGSGEPRFLMIETRKCSN--LGISLVGG-----NAVGIYVHSVQSGSLG 1273
SS + +E +K LGIS+ GG V I++ + +
Sbjct: 7 HSSGVDLGTENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVA 66
Query: 1274 YSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVE 1320
LR GDRI+ GT T +A L + + + +
Sbjct: 67 AQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGD 114
Score = 53.9 bits (130), Expect = 1e-08
Identities = 15/69 (21%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
+ ++I + P +AA+ L VGDR+++I + +G++ + + LL ++ + + +
Sbjct: 52 DVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHT-QAVNLLKNASGSIEMQVV 110
Query: 266 KPTSLGEHS 274
+ E S
Sbjct: 111 AGGDVSETS 119
Score = 53.9 bits (130), Expect = 1e-08
Identities = 15/69 (21%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
+ ++I + P +AA+ L VGDR+++I + +G++ + + LL ++ + + +
Sbjct: 52 DVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHT-QAVNLLKNASGSIEMQVV 110
Query: 890 KPTSLGEHS 898
+ E S
Sbjct: 111 AGGDVSETS 119
Score = 43.9 bits (104), Expect = 3e-05
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 39 LHSVSHNYSHDSAIDTDLQEWDTEVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYV 98
+H H+ S +L + + + P ++LG+ + GG P D I++
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMGLRTVEMKK-GPTDSLGISIAGGVGSPL--GDVPIFI 57
Query: 99 SNIVKGSV--TDGKLK 112
+ + V KL+
Sbjct: 58 AMMHPTGVAAQTQKLR 73
Score = 34.6 bits (80), Expect = 0.067
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+V D IV + ++ + ++++ S M +
Sbjct: 73 RVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGG 113
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 70.5 bits (173), Expect = 8e-15
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 1128 ELRRVHIDKSVEPLGIQIQC-LDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRS 1185
++ + + K+ EPLG I+ +G + V+ + A + G + VGD+L EV GI +
Sbjct: 4 SVKIIRLVKNREPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVED 63
Query: 1186 ATYQLAASVLRQCGNSITMLV 1206
+ +L Q +IT +
Sbjct: 64 KRPEEIIQILAQSQGAITFKI 84
Score = 53.9 bits (130), Expect = 5e-09
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Query: 1233 GSGEPRFLMIETRKCSN-LGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 1289
GS + +I K LG ++ I V + G +G + GD + E NG
Sbjct: 1 GSDSVK--IIRLVKNREPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNG 58
Query: 1290 TDLRAATAEEAAYELAKPADKVT 1312
+ EE LA+ +T
Sbjct: 59 IPVEDKRPEEIIQILAQSQGAIT 81
Score = 52.3 bits (126), Expect = 2e-08
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 263
+ + +I G A + G + VGD + +N V+ E + +L+ S +T
Sbjct: 28 GAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDK-RPEEIIQILAQSQGAITFK 83
Score = 52.3 bits (126), Expect = 2e-08
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887
+ + +I G A + G + VGD + +N V+ E + +L+ S +T
Sbjct: 28 GAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDK-RPEEIIQILAQSQGAITFK 83
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 71.2 bits (175), Expect = 8e-15
Identities = 15/107 (14%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 1108 RQNKRNSLPDYCCSHKPHPGELRRVHIDKSVEPLGIQIQCLDSGG------VFVSTVSEH 1161
+ + + + + V +++ + G + GG ++V ++E
Sbjct: 4 HHHHSSGVDLGTENLYFQSMDFYTVELERGAKGFGFSL----RGGREYNMDLYVLRLAED 59
Query: 1162 SLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQ 1207
A + G +++GD++LE+ G ++ + A +++ G + + ++
Sbjct: 60 GPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLK 106
Score = 58.5 bits (142), Expect = 2e-10
Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 1219 SGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSA 1276
S S + + +E R G SL GG + +YV + +
Sbjct: 7 HSSGVDLGTENLYFQSMDFYTVELE-RGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERS 65
Query: 1277 G-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT 1312
G +R GD ILE NG + A + +V
Sbjct: 66 GKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVR 102
Score = 53.5 bits (129), Expect = 1e-08
Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 266
LY+ +++ A + G + +GD +L IN T + + + L+ + + + +
Sbjct: 49 MDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHS-RAIELIKNGGRRVRLFLKR 107
Query: 267 PTS 269
+
Sbjct: 108 GET 110
Score = 53.5 bits (129), Expect = 1e-08
Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 890
LY+ +++ A + G + +GD +L IN T + + + L+ + + + +
Sbjct: 49 MDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHS-RAIELIKNGGRRVRLFLKR 107
Query: 891 PTS 893
+
Sbjct: 108 GET 110
Score = 37.0 bits (86), Expect = 0.008
Identities = 7/41 (17%), Positives = 19/41 (46%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
++ D I+ +N N+ +E +++ G + ++R
Sbjct: 69 RIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGE 109
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 79.1 bits (195), Expect = 9e-15
Identities = 41/256 (16%), Positives = 98/256 (38%), Gaps = 21/256 (8%)
Query: 411 DKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALA 470
++L+ +E + + + +++ Q+ E+N L+++ A E E + LA
Sbjct: 864 EELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETEL----YAEAEEMRVRLA 919
Query: 471 KVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSE 530
+Q+ E+ + E+ + + + ++L E+ Q+ + + + +KL
Sbjct: 920 AKKQELEEILHEMEARIE---EEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQL 976
Query: 531 DLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGE 590
+ A KIK +E + + + L+ + + L+ ++ + + ++ +L + +
Sbjct: 977 EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036
Query: 591 FTAAKEECQREAFHARFEYAMRMGERDSSRKERNEVEAASMDLFGKCQKERMDNLEANQE 650
+ E + K R E+E L G+ E +
Sbjct: 1037 HESMISELEVRL--------------KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ 1082
Query: 651 IDRLRKHTDKLQAELQ 666
I L+ K + ELQ
Sbjct: 1083 IAELKAQLAKKEEELQ 1098
Score = 79.1 bits (195), Expect = 1e-14
Identities = 44/313 (14%), Positives = 113/313 (36%), Gaps = 16/313 (5%)
Query: 293 VRQHNETVRRGDHTLKELEY-YRGQHQAA---MAQLEAAAQESSSLRSKYSDLISDKQRL 348
+++ E ++ + LKELE + + +L+A + + L + KQ L
Sbjct: 866 LQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQEL 925
Query: 349 DRELLELRSGCCTQPESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHST 408
+ L E+ + +Q + K + + L ++ ++
Sbjct: 926 EEILHEME---------ARIEEEEERSQQLQAEKKKMQ---QQMLDLEEQLEEEEAARQK 973
Query: 409 AVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEA 468
+ A ++ +++ M + N +ER L+++ + + +
Sbjct: 974 LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL 1033
Query: 469 LAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKL 528
K + + + R + K ++L E + ++ + + ++ + ++ K
Sbjct: 1034 KNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093
Query: 529 SEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERF 588
E+L A+ +++ + ++ + L I L+ ++ S R+KA K+ DL E
Sbjct: 1094 EEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEEL 1153
Query: 589 GEFTAAKEECQRE 601
E+
Sbjct: 1154 EALKTELEDTLDT 1166
Score = 71.8 bits (176), Expect = 2e-12
Identities = 46/288 (15%), Positives = 112/288 (38%), Gaps = 23/288 (7%)
Query: 307 LKELEYYRGQHQAAMAQLEAAAQESSS----LRSKYSDLISDKQRLDRELLELRSGCCTQ 362
E E R + A +LE E + + L ++K+++ +++L+L +
Sbjct: 908 YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDL-----EE 962
Query: 363 PESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVAR 422
++ + L ++A K + ++D+ + + + L + +L +E V+
Sbjct: 963 QLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK-------ERKLLEERVSD 1015
Query: 423 IKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKE 482
+ + ++ + +N + + + + R E ++ K++ + D ++
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075
Query: 483 INTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEM-------EKLSEDLTQA 535
I A + L + EE AA+ S++++ K++ L EDL
Sbjct: 1076 IAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESE 1135
Query: 536 VRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECND 583
E + ++L E+ + L ++E A+ R K+ +D
Sbjct: 1136 KAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 47.1 bits (112), Expect = 5e-05
Identities = 33/192 (17%), Positives = 72/192 (37%), Gaps = 29/192 (15%)
Query: 507 AMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQI------ 560
+ + + E + +E+++ E +A ++K LE ++ +L E+K L ++
Sbjct: 848 PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETEL 907
Query: 561 -----ETLKREIASALHDRDKALKECNDLR---ERFGEFTAAKEECQREAFHARFEYAMR 612
E R A + + + ER + A K++ Q++
Sbjct: 908 YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLE------ 961
Query: 613 MGERDSSRKERNEVEAASMDLFGKCQKERMDNLEANQEIDRLRKHTDKLQAELQDQSVNY 672
+ + R +++ + GK +K D L + ++L K L+ + D
Sbjct: 962 -EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD----- 1015
Query: 673 LFILTESIQEAE 684
LT ++ E E
Sbjct: 1016 ---LTTNLAEEE 1024
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 70.8 bits (174), Expect = 9e-15
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 18/108 (16%)
Query: 1124 PHPGELRRVHIDKSVEPLGIQIQCLDSGG------VFVSTVSEHSLASQVG-LQVGDQLL 1176
+ V ++K + G I GG ++V ++E A + G ++VGDQ++
Sbjct: 7 GQDFDYFTVDMEKGAKGFGFSI----RGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQII 62
Query: 1177 EVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSA 1224
E+ G + R T+ A +++ G + +L++ GSG SS
Sbjct: 63 EINGESTRDMTHARAIELIKSGGRRVRLLLKRGT-------GSGPSSG 103
Score = 62.0 bits (151), Expect = 9e-12
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 1230 SGRGSGEPRFLMIETRKCSN-LGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRIL 1285
SG + + ++ K + G S+ GG + +YV + G +R GD+I+
Sbjct: 3 SGSSGQDFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQII 62
Query: 1286 EYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVER 1321
E NG R T A + +V +L +
Sbjct: 63 EINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGS 98
Score = 57.7 bits (140), Expect = 3e-10
Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 266
LY+ +++ A + G + VGD+++ IN + ++ A + L+ + + +
Sbjct: 36 MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHA-RAIELIKSGGRRVRLLLKR 94
Query: 267 PTSLGEHS 274
T G S
Sbjct: 95 GTGSGPSS 102
Score = 57.7 bits (140), Expect = 3e-10
Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 890
LY+ +++ A + G + VGD+++ IN + ++ A + L+ + + +
Sbjct: 36 MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHA-RAIELIKSGGRRVRLLLKR 94
Query: 891 PTSLGEHS 898
T G S
Sbjct: 95 GTGSGPSS 102
Score = 36.5 bits (85), Expect = 0.008
Identities = 8/41 (19%), Positives = 21/41 (51%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+V D I+ +N +++ +E ++S G ++++R
Sbjct: 56 RVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGT 96
Score = 33.8 bits (78), Expect = 0.069
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
+ G + GGR+ +YV + + +G+++
Sbjct: 21 AKGFGFSIRGGRE-----YKMDLYVLRLAEDGPAIRNGRMR 56
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 105
Score = 70.4 bits (173), Expect = 1e-14
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 16/108 (14%)
Query: 1126 PGELRRVHIDKSVEPLGIQI--------QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLL 1176
+ +S LG I G+FVS ++E A + G LQVGD++L
Sbjct: 5 SSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVL 64
Query: 1177 EVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSA 1224
+ G+++ A + A S+L +I +L++ GSG SS
Sbjct: 65 SINGVDVTEARHDHAVSLLTAASPTIALLLEREA-------GSGPSSG 105
Score = 59.3 bits (144), Expect = 9e-11
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 14/98 (14%)
Query: 1234 SGEPRFLMIETRKCSN-LGISLVGG--------NAVGIYVHSVQSGSLGYSAG-LRTGDR 1283
SG + + LG S+ GG GI+V + G + AG L+ GDR
Sbjct: 3 SGSSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDR 62
Query: 1284 ILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVER 1321
+L NG D+ A + A L + + +L +ER
Sbjct: 63 VLSINGVDVTEARHDHAVSLLTAASPTIALL----LER 96
Score = 51.6 bits (124), Expect = 6e-08
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
++G+++ +I+ G A + G+L VGDRVLSIN V ++LL+ + + +
Sbjct: 37 DAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHD-HAVSLLTAASPTIALLLE 95
Query: 266 KPTSLGEHS 274
+ G S
Sbjct: 96 REAGSGPSS 104
Score = 51.6 bits (124), Expect = 6e-08
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
++G+++ +I+ G A + G+L VGDRVLSIN V ++LL+ + + +
Sbjct: 37 DAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHD-HAVSLLTAASPTIALLLE 95
Query: 890 KPTSLGEHS 898
+ G S
Sbjct: 96 REAGSGPSS 104
Score = 40.0 bits (94), Expect = 5e-04
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 73 PNEALGLELVGGRDD-PFYPNDSSIYVSNIVKGSV--TDGKLK 112
LG + GG+ P+ D+ I+VS I +G G L+
Sbjct: 16 SERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQ 58
Score = 34.6 bits (80), Expect = 0.048
Identities = 5/41 (12%), Positives = 19/41 (46%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+V D ++ +N +D + + + ++ + +++ R
Sbjct: 58 QVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREA 98
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 70.0 bits (172), Expect = 1e-14
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 1128 ELRRVHIDKS-VEPLGIQIQC-LDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMR 1184
+ + + K + LG+ I + GVFVS + + +A G L GDQ+L V G ++R
Sbjct: 4 DTLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVR 63
Query: 1185 SATYQLAASVLRQCGNSITMLVQY 1208
+AT + A++L+ ++T+ V
Sbjct: 64 NATQEAVAALLKCSLGTVTLEVGR 87
Score = 62.6 bits (153), Expect = 5e-12
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 1250 LGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP 1307
LG+S+VG N G++V + G + + G L GD+IL NG D+R AT E A L
Sbjct: 18 LGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCS 77
Query: 1308 ADKVTVLAQY 1317
VT+
Sbjct: 78 LGTVTLEVGR 87
Score = 54.2 bits (131), Expect = 5e-09
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
++G+++ I G +A +G L GD++L +N V + ALL S +T+
Sbjct: 28 DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQE-AVAALLKCSLGTVTLEVG 86
Query: 266 KPTS 269
+ ++
Sbjct: 87 RIST 90
Score = 54.2 bits (131), Expect = 5e-09
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
++G+++ I G +A +G L GD++L +N V + ALL S +T+
Sbjct: 28 DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQE-AVAALLKCSLGTVTLEVG 86
Query: 890 KPTS 893
+ ++
Sbjct: 87 RIST 90
Score = 38.4 bits (90), Expect = 0.001
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Query: 61 TEVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLKK 113
++ L + L P + LGL +VG R+D ++VS+IVKG + DG+L +
Sbjct: 3 SDTLTIGLQK-KPGKGLGLSIVGKRNDT------GVFVSDIVKGGIADADGRLMQ 50
Score = 31.4 bits (72), Expect = 0.48
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
D I+ VN D N ++ V ++ S + + + R
Sbjct: 49 MQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRIS 89
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 70.1 bits (172), Expect = 1e-14
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 1127 GELRRVHIDKS--VEPLGIQIQCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINM 1183
+ +V + KS E G+++ + +FV +S+ SLA++ G +Q GD +L++ G
Sbjct: 1 AKPTKVTLVKSAKNEEYGLRL----ASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVT 56
Query: 1184 RSATYQLAASVLRQCGNSITMLVQYSP 1210
+ + A +++ + + M+VQ
Sbjct: 57 ENMSLTDAKTLIERSKGKLKMVVQRDE 83
Score = 68.2 bits (167), Expect = 5e-14
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 200 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 259
++GL L S +++ +IS SLAA++G++ GD VL IN + +S + L+ S
Sbjct: 16 EYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLT-DAKTLIERSKGK 74
Query: 260 LTITTLKPTS 269
L + +
Sbjct: 75 LKMVVQRDER 84
Score = 68.2 bits (167), Expect = 5e-14
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 824 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 883
++GL L S +++ +IS SLAA++G++ GD VL IN + +S + L+ S
Sbjct: 16 EYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLT-DAKTLIERSKGK 74
Query: 884 LTITTLKPTS 893
L + +
Sbjct: 75 LKMVVQRDER 84
Score = 59.3 bits (144), Expect = 6e-11
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 1235 GEPRFLMIE-TRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 1292
+P + + + K G+ L I+V + SL G ++ GD +L+ NGT
Sbjct: 1 AKPTKVTLVKSAKNEEYGLRLASH----IFVKEISQDSLAARDGNIQEGDVVLKINGTVT 56
Query: 1293 RAATAEEAAYELAKPADKVTVL 1314
+ +A + + K+ ++
Sbjct: 57 ENMSLTDAKTLIERSKGKLKMV 78
Score = 32.0 bits (73), Expect = 0.31
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+ D ++++N N+S + S MV++R
Sbjct: 43 QEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDE 83
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil,
deafness, hearing, non-syndromic deafness, polymorphism;
2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 73.1 bits (179), Expect = 1e-14
Identities = 23/115 (20%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 1099 HVEVLSPGLRQNKRNSLPDYCCSHKPHPGELRRVHIDKS-VEPLGIQIQ--CLDSGGVFV 1155
+ + +Y +L+ V +D+ E LG+ ++ G+F+
Sbjct: 55 RLPLFDAIRPLIPLKHQVEYDQLTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFI 114
Query: 1156 STVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSP 1210
S + + A VGLQVGD+++ + G ++ S T++ +++R ++++ V++
Sbjct: 115 SHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT-EKTVSIKVRHIG 168
Score = 69.2 bits (169), Expect = 3e-13
Identities = 31/156 (19%), Positives = 61/156 (39%), Gaps = 16/156 (10%)
Query: 1177 EVCGINMRSATYQLAASVLRQCGNSITM--------LVQYSPDKYHELEG-----SGSSS 1223
+V + A VLR ++ + LV P + +
Sbjct: 12 KVDFLIENDAEKDYLYDVLRMYHQTMDVAVLVGDLKLVINEPSRLPLFDAIRPLIPLKHQ 71
Query: 1224 AENESVSGRGSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTG 1281
E + ++ R S + + + ++ LG+S+ GG G+++ + G S GL+ G
Sbjct: 72 VEYDQLTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVG 131
Query: 1282 DRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQY 1317
D I+ NG + + T EE L + V++ ++
Sbjct: 132 DEIVRINGYSISSCTHEEVI-NLIRTEKTVSIKVRH 166
Score = 44.6 bits (105), Expect = 7e-05
Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 15/126 (11%)
Query: 745 HPRRHKERL--PLSALLNNPPSYKVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVI 802
H L L ++N P + D I + ++ + + + L +
Sbjct: 34 HQTMDVAVLVGDLKLVINEPSRLPLFDAI-----RPLIPLKHQVEYDQLTPRRSRKLKEV 88
Query: 803 RRRRVGARSLVTTQLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNR 862
R R+ L L + + G GL+I + G A G L VGD ++ IN
Sbjct: 89 RLDRLHPEGL---GLSVRGGLEFGC----GLFISHLIKGGQADSVG-LQVGDEIVRINGY 140
Query: 863 TVDGLS 868
++ +
Sbjct: 141 SISSCT 146
Score = 43.4 bits (102), Expect = 2e-04
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 192 GLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 244
GL + + G GL+I + G A G L VGD ++ IN ++ +
Sbjct: 99 GLSVRGGLEFGC----GLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCT 146
Score = 31.8 bits (72), Expect = 1.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRV 807
+V D IVR+N S+ + V+ +R+ T ++ V +
Sbjct: 129 QVGDEIVRINGYSISSCTHEEVINLIRTEKTVSIKVRHIGLI 170
Score = 29.5 bits (66), Expect = 7.1
Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 12/107 (11%)
Query: 2 LKPPEPRQQPSENREDQNHVVVPIHKTQVEKESRMLQLHSVSHNYSHDSAIDTDLQEWDT 61
L+ + D V+ + + R L + H +D ++
Sbjct: 30 LRMYHQTMDVAVLVGDLKLVINEPSRLPLFDAIR--PLIPLKHQVEYDQLTPRRSRKLKE 87
Query: 62 EVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSVTD 108
L + E LGL + GG + +++S+++KG D
Sbjct: 88 VRL-----DRLHPEGLGLSVRGGLE-----FGCGLFISHLIKGGQAD 124
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 70.1 bits (172), Expect = 1e-14
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 1126 PGELRRVHIDK--SVEPLGIQIQ-CLDSG-GVFVSTVSEHSLASQVGLQVGDQLLEVCGI 1181
GE+R V + + + E LG I+ + G G++VS V SLA + GL+VGDQ+L V
Sbjct: 6 SGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDK 65
Query: 1182 NMRSATYQLAASVLRQCGNSITMLV 1206
++ T+ A L+ + +
Sbjct: 66 SLARVTHAEAVKALKGSKKLVLSVY 90
Score = 69.7 bits (171), Expect = 2e-14
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 1230 SGRGSGEPRFLMIE-TRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILE 1286
S SGE R + + + LG S+ GG + VGIYV V+ GSL GLR GD+IL
Sbjct: 2 SSGSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILR 61
Query: 1287 YNGTDLRAATAEEAAYELAKPADKVTVL 1314
N L T EA + K + K+ +
Sbjct: 62 VNDKSLARVTHAEAV-KALKGSKKLVLS 88
Score = 46.2 bits (110), Expect = 4e-06
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 200 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 259
+HG+ G+Y+ + PGSLA KEG L VGD++L +N++++ ++ A AL V
Sbjct: 32 EHGV----GIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGSKKLV 86
Query: 260 LTITTLKPTS 269
L++ + S
Sbjct: 87 LSVYSAGRIS 96
Score = 46.2 bits (110), Expect = 4e-06
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 824 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 883
+HG+ G+Y+ + PGSLA KEG L VGD++L +N++++ ++ A AL V
Sbjct: 32 EHGV----GIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGSKKLV 86
Query: 884 LTITTLKPTS 893
L++ + S
Sbjct: 87 LSVYSAGRIS 96
Score = 38.5 bits (90), Expect = 0.002
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRV 807
+V D I+RVN+ + V+ ++ ++ S L V R+
Sbjct: 54 RVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRI 95
Score = 30.0 bits (68), Expect = 1.6
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 72 SPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSVTD 108
+E LG + GG + + IYVS + GS+ +
Sbjct: 18 KAHEGLGFSIRGGSE-----HGVGIYVSLVEPGSLAE 49
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 69.6 bits (171), Expect = 2e-14
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 1127 GELRRVHIDKSVEPLGIQIQCLDSGG------VFVSTVSEHSLASQVGLQVGDQLLEVCG 1180
G V + P G ++ GG + +S V S A+ L GD + + G
Sbjct: 7 GMPHSVTLRGP-SPWGFRLV----GGRDFSAPLTISRVHAGSKAALAALCPGDLIQAING 61
Query: 1181 INMRSATYQLAASVLRQCGNSITMLVQYSP 1210
+ T+ A + ++ C + +T+ V P
Sbjct: 62 ESTELMTHLEAQNRIKGCHDHLTLSVSSGP 91
Score = 55.7 bits (135), Expect = 1e-09
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 1234 SGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTD 1291
SG P + R S G LVGG + + + V +GS A L GD I NG
Sbjct: 6 SGMPHS--VTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGES 63
Query: 1292 LRAATAEEAAYELAKPADKVT 1312
T EA + D +T
Sbjct: 64 TELMTHLEAQNRIKGCHDHLT 84
Score = 54.2 bits (131), Expect = 5e-09
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 261
G + L I ++ GS AA L GD + +IN + + ++ E + D LT
Sbjct: 27 GRDFSAPLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHL-EAQNRIKGCHDHLT 84
Query: 262 ITTLKPTSLG 271
++ S G
Sbjct: 85 LSVSSGPSSG 94
Score = 54.2 bits (131), Expect = 5e-09
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 885
G + L I ++ GS AA L GD + +IN + + ++ E + D LT
Sbjct: 27 GRDFSAPLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHL-EAQNRIKGCHDHLT 84
Query: 886 ITTLKPTSLG 895
++ S G
Sbjct: 85 LSVSSGPSSG 94
Score = 33.8 bits (78), Expect = 0.073
Identities = 3/39 (7%), Positives = 10/39 (25%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRR 804
D I +N ++ ++ + +
Sbjct: 51 CPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSS 89
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 69.8 bits (171), Expect = 2e-14
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 1121 SHKPHPGELRRVHIDKSVEP-LGIQI----------QCLDSGGVFVSTVSEHSLASQVGL 1169
SH H + + + +P LG I D G+FV+ V AS++ L
Sbjct: 2 SHMGHELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-L 60
Query: 1170 QVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQ 1207
Q GD++++ G + + + A S+L+ N++ +++
Sbjct: 61 QPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 98
Score = 53.2 bits (128), Expect = 1e-08
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 1235 GEPRFLMIETRKCSNLGISLVGG----------NAVGIYVHSVQSGSLGYSAGLRTGDRI 1284
+ + + K LG S+ GG + GI+V VQ L+ GD+I
Sbjct: 8 LAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKI 66
Query: 1285 LEYNGTDLRAATAEEAAYELAKPADKVTVL 1314
++ NG +A L + V ++
Sbjct: 67 IQANGYSFINIEHGQAVSLLKTFQNTVELI 96
Score = 44.7 bits (106), Expect = 1e-05
Identities = 10/64 (15%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
+ G+++ ++ P A L GD+++ N + + + ++LL + + + +
Sbjct: 42 DDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHG-QAVSLLKTFQNTVELIIV 98
Query: 266 KPTS 269
+ S
Sbjct: 99 REVS 102
Score = 44.7 bits (106), Expect = 1e-05
Identities = 10/64 (15%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
+ G+++ ++ P A L GD+++ N + + + ++LL + + + +
Sbjct: 42 DDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHG-QAVSLLKTFQNTVELIIV 98
Query: 890 KPTS 893
+ S
Sbjct: 99 REVS 102
Score = 42.8 bits (101), Expect = 6e-05
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 70 NLSPNEALGLELVGGRD---DPFYPNDSSIYVSNIVKGSVTDGKLK 112
+ + LG + GG +PF P+D I+V+ + L+
Sbjct: 16 RVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQ 61
Score = 36.6 bits (85), Expect = 0.010
Identities = 6/40 (15%), Positives = 17/40 (42%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRR 805
+ D I++ N N+ + +++ + ++I R
Sbjct: 61 QPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 100
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 68.8 bits (169), Expect = 2e-14
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 196 NNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSD 255
+ ++GL L S +++ +IS SLAA++G++ GD VL IN + +S + L+
Sbjct: 10 RKNEEYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLT-DAKTLIER 68
Query: 256 SPDVLTITTLKP 267
S L + +
Sbjct: 69 SKGKLKMVVQRD 80
Score = 68.8 bits (169), Expect = 2e-14
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 820 NNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSD 879
+ ++GL L S +++ +IS SLAA++G++ GD VL IN + +S + L+
Sbjct: 10 RKNEEYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLT-DAKTLIER 68
Query: 880 SPDVLTITTLKP 891
S L + +
Sbjct: 69 SKGKLKMVVQRD 80
Score = 66.5 bits (163), Expect = 2e-13
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 1131 RVHIDKS--VEPLGIQIQCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSAT 1187
+V + KS E G+++ +FV +S+ SLA++ G +Q GD +L++ G + +
Sbjct: 3 KVTLVKSRKNEEYGLRLAS----HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMS 58
Query: 1188 YQLAASVLRQCGNSITMLVQ 1207
A +++ + + M+VQ
Sbjct: 59 LTDAKTLIERSKGKLKMVVQ 78
Score = 54.6 bits (132), Expect = 3e-09
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 1244 TRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAY 1302
+RK G+ L I+V + SL G ++ GD +L+ NGT + +A
Sbjct: 9 SRKNEEYGLRLASH----IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKT 64
Query: 1303 ELAKPADKVTVL 1314
+ + K+ ++
Sbjct: 65 LIERSKGKLKMV 76
Score = 31.1 bits (71), Expect = 0.49
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRR 804
+ D ++++N N+S + S MV++R
Sbjct: 41 QEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQR 79
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 107
Score = 69.7 bits (171), Expect = 2e-14
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 1121 SHKPHPGELRRVHIDKSVEPLGIQI--------QCLDSGGVFVSTVSEHSLASQVG-LQV 1171
S EL V ++K + LGI I L+ G+FV TV+E A + G +QV
Sbjct: 2 SSGSSGLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQV 61
Query: 1172 GDQLLEVCGINMRSATYQLAASVLRQCGNSITMLV 1206
DQ++EV GI++ T AA+VLR ++ ++
Sbjct: 62 NDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVI 96
Score = 58.5 bits (142), Expect = 2e-10
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 1233 GSGEPRFLMIETRKCSN-LGISLVGG--------NAVGIYVHSVQSGSLGYSAG-LRTGD 1282
GS +E K + LGIS++G +GI+V +V G G ++ D
Sbjct: 4 GSSGLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVND 63
Query: 1283 RILEYNGTDLRAATAEEAAYELAKPADKVTVL 1314
+I+E +G L T AA L V +
Sbjct: 64 QIVEVDGISLVGVTQNFAATVLRNTKGNVRFV 95
Score = 52.7 bits (127), Expect = 2e-08
Identities = 10/68 (14%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 266
G+++ ++ G A ++G + V D+++ ++ ++ G++ +L ++ + +
Sbjct: 40 LGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQN-FAATVLRNTKGNVRFVIGR 98
Query: 267 PTSLGEHS 274
G S
Sbjct: 99 EKPSGPSS 106
Score = 52.7 bits (127), Expect = 2e-08
Identities = 10/68 (14%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 890
G+++ ++ G A ++G + V D+++ ++ ++ G++ +L ++ + +
Sbjct: 40 LGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQN-FAATVLRNTKGNVRFVIGR 98
Query: 891 PTSLGEHS 898
G S
Sbjct: 99 EKPSGPSS 106
Score = 35.8 bits (83), Expect = 0.021
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+VND IV V+ + V++ +R++ + VI R +
Sbjct: 60 QVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREK 100
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium, SGC,
unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 68.9 bits (169), Expect = 3e-14
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 1130 RRVHIDKSVEPLGIQIQC-LDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATY 1188
R H+ K + G + G ++ +V S A++ GL+ D+L+EV G N+ +
Sbjct: 6 RLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRH 65
Query: 1189 QLAASVLRQCGNSITMLV 1206
+ ++ + +LV
Sbjct: 66 AEVVASIKAREDEARLLV 83
Score = 57.3 bits (139), Expect = 3e-10
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 1236 EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRA 1294
PR + + G +L + G Y+ SV GS +GLR DR++E NG ++
Sbjct: 4 RPRLCHLR-KGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 62
Query: 1295 ATAEEAAYELAKPADKVTVL 1314
E + D+ +L
Sbjct: 63 LRHAEVVASIKAREDEARLL 82
Score = 46.1 bits (110), Expect = 3e-06
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 201 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 260
H G YI + PGS AA+ G L DR++ +N + V+GL A E +A + D
Sbjct: 22 HSDKSRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHA-EVVASIKAREDEA 79
Query: 261 TITTLKPTS 269
+ + P++
Sbjct: 80 RLLVVGPST 88
Score = 46.1 bits (110), Expect = 3e-06
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 825 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 884
H G YI + PGS AA+ G L DR++ +N + V+GL A E +A + D
Sbjct: 22 HSDKSRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHA-EVVASIKAREDEA 79
Query: 885 TITTLKPTS 893
+ + P++
Sbjct: 80 RLLVVGPST 88
Score = 30.3 bits (69), Expect = 0.91
Identities = 6/40 (15%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTS-ALMVIRR 804
+ D ++ VN + + V+ ++++ L+V+
Sbjct: 47 RAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 86
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 69.7 bits (171), Expect = 3e-14
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 1125 HPGELRRVHIDKS-VEPLGIQI-----QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLE 1177
+ V+I K E LG+ + ++V +V + S+ G ++ GD LL
Sbjct: 21 QSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLN 80
Query: 1178 VCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211
V G+ + + A ++L++ +SI + +
Sbjct: 81 VDGVELTEVSRSEAVALLKRTSSSIVLKALEVKE 114
Score = 61.6 bits (150), Expect = 2e-11
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 1213 YHELEGSGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG-----NAVGIYVHSV 1267
+H SG S + + I+ +LG+++ GG + IYV SV
Sbjct: 3 HHHHHSSGVDLGTENLYFQ--SMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISV 60
Query: 1268 QSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVE 1320
+ G + G ++TGD +L +G +L + EA L + + + + A E
Sbjct: 61 EPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKE 114
Score = 53.9 bits (130), Expect = 1e-08
Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD--VLTIT 263
+ +Y+ + PG + +++G + GD +L+++ + +S + E +ALL + VL
Sbjct: 52 DLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRS-EAVALLKRTSSSIVLKAL 110
Query: 264 TLKPTSL 270
+K S+
Sbjct: 111 EVKEGSI 117
Score = 53.9 bits (130), Expect = 1e-08
Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD--VLTIT 887
+ +Y+ + PG + +++G + GD +L+++ + +S + E +ALL + VL
Sbjct: 52 DLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRS-EAVALLKRTSSSIVLKAL 110
Query: 888 TLKPTSL 894
+K S+
Sbjct: 111 EVKEGSI 117
Score = 41.6 bits (98), Expect = 2e-04
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 39 LHSVSHNYSHDSAIDTDLQEWDTEVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYV 98
+H H+ S +L +N+ P E+LG+ + GG D IYV
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMHEKVVNI-QKDPGESLGMTVAGGASHR--EWDLPIYV 57
Query: 99 SNIVKGSV--TDGKLK 112
++ G V DG++K
Sbjct: 58 ISVEPGGVISRDGRIK 73
Score = 32.4 bits (74), Expect = 0.31
Identities = 7/44 (15%), Positives = 23/44 (52%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGA 809
K D ++ V+ ++ + VS+ + ++ + +S ++ + G+
Sbjct: 73 KTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKEGS 116
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics,
SGC, structural genomics consortium, unknown function;
1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 69.3 bits (170), Expect = 5e-14
Identities = 21/97 (21%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 1121 SHKPHPGELRRVHIDKSVEPLGIQI-----QCLDSGGVFVSTVSEHSLASQVG-LQVGDQ 1174
+ + + + +++ + LG I ++V TV AS+ G L+ GDQ
Sbjct: 18 LYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQ 77
Query: 1175 LLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211
++ V G ++ T++ A ++L++ ++T++V S +
Sbjct: 78 IIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE 114
Score = 62.4 bits (152), Expect = 1e-11
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 1219 SGSSSAENESVSGRGSGEPRFLMIETRKCSN-LGISLVGG-----NAVGIYVHSVQSGSL 1272
SS + + + P+ I + + LG S+VGG + IYV +V +
Sbjct: 6 HHSSGVDLGTENLYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGA 65
Query: 1273 GYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVE 1320
G L+ GD+I+ NG L T EEA L + VT++ S E
Sbjct: 66 ASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE 114
Score = 52.4 bits (126), Expect = 4e-08
Identities = 14/67 (20%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD--VLTIT 263
+ +Y+ + A+++G L GD+++++N ++++G++ E +A+L + L +
Sbjct: 52 DLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHE-EAVAILKRTKGTVTLMVL 110
Query: 264 TLKPTSL 270
+ TS+
Sbjct: 111 SSDETSV 117
Score = 52.4 bits (126), Expect = 4e-08
Identities = 14/67 (20%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD--VLTIT 887
+ +Y+ + A+++G L GD+++++N ++++G++ E +A+L + L +
Sbjct: 52 DLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHE-EAVAILKRTKGTVTLMVL 110
Query: 888 TLKPTSL 894
+ TS+
Sbjct: 111 SSDETSV 117
Score = 36.9 bits (86), Expect = 0.008
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 39 LHSVSHNYSHDSAIDTDLQEWDT-EVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIY 97
+H H+ S +L + + L + LG +VGG P D IY
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMPQCKSITLER--GPDGLGFSIVGGYGSPHG--DLPIY 56
Query: 98 VSNIVKGSV--TDGKLK 112
V + DG+LK
Sbjct: 57 VKTVFAKGAASEDGRLK 73
Score = 32.3 bits (74), Expect = 0.35
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
K D I+ VN V+ + ++ + + +++
Sbjct: 73 KRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSD 113
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 76.8 bits (188), Expect = 5e-14
Identities = 90/606 (14%), Positives = 180/606 (29%), Gaps = 157/606 (25%)
Query: 15 REDQNHVVVPIHKTQVEKESRMLQLHSVSHNYSHDSAIDTDLQ---EWDTEVLDMNLTNL 71
+E+ +H++ + K V R+ ++ L+ ++ +
Sbjct: 48 KEEIDHII--MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 72 SPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSVTDGKLKKKEEVARIKKQCEDMNQEK 131
S + +E D Y ND+ ++ K +V+ + + ++++ ++ K
Sbjct: 106 SMMTRMYIEQR----DRLY-NDNQVFA----KYNVS-----RLQPYLKLRQALLELRPAK 151
Query: 132 NTALRERNGLK---QQCTAA--IRQ------------WDIALRERNEYQEALAKVQ---- 170
N + +G+ + A W + L+ N + L +Q
Sbjct: 152 NVLI---DGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLY 207
Query: 171 -------QQHEDAVKEINTAMAVTNYLDGLQLNNSYDHGL----------TLESGLYICK 213
+ + + ++ L L + Y++ L + CK
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 214 ISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKPTSLGEH 273
I L + + + D LS+A L LT
Sbjct: 268 I-----------L-----LTTRFKQVTDFLSAATTTHISLDHHSMTLT----PDEVKS-- 305
Query: 274 SPRVHRKSVNSSTQTMPLYVRQHN--------ETVRRGDHTLKELEYYRGQHQAAMAQLE 325
+ K ++ Q +P V N E++R G T ++ + +
Sbjct: 306 ---LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 326 AAAQESSSLRSKYSDL--------ISDKQRLDRELLELRSGCCTQPESDDAGSADSLNQH 377
E + R + L I LL L +SD + L H
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTI------LLSLI--WFDVIKSDVMVVVNKL--H 412
Query: 378 YMSALNKYE-----TIKDEYDALRKRFDDLINTHSTAVDKLELAQE-EVARIKKQCEDM- 430
S + K +I Y L+ + ++ H + VD + + + + D
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 431 -------------NQEKNTALRE--------RNGLKQQCTAAIRQWDIA--LRERNEYQE 467
+ E+ T R ++ TA I L++ Y+
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 468 ALAKVQQQHEDAVKEINT------AMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSV 521
+ ++E V I + K T DL R+ A M E I E
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSKYT-DLLRI-----ALMAEDEAIFEE---A 583
Query: 522 HKEMEK 527
HK++++
Sbjct: 584 HKQVQR 589
Score = 74.9 bits (183), Expect = 2e-13
Identities = 84/596 (14%), Positives = 198/596 (33%), Gaps = 186/596 (31%)
Query: 330 ESSSLRSKYSDLISD-----KQRLD-RELLELRSGCCTQPESDD-AGSADSLNQHYM--- 379
E+ + +Y D++S D +++ ++ ++ E D S D+++
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 380 SALNKYETIKDEY--DALRKRFDDLIN--------------THSTAVDKL-----ELAQE 418
+ L+K E + ++ + LR + L++ + D+L A+
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 419 EVAR------IKKQCEDMNQEKNTALRERNGLK---QQCTAA--IRQ------------W 455
V+R +++ ++ KN + +G+ + A W
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLI---DGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 456 DIALRERNEYQEALAKVQQ------QHEDAVKEINTAMAVRMKATKD-LKRLTEERNAAM 508
+ L+ N + L +Q+ + + + ++ + +R+ + + L+RL + +
Sbjct: 187 -LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---- 241
Query: 509 QEYS---LIMSERDSV-HKEM----------------EKLSEDLTQAVRKIKTLEMENKE 548
Y L++ +V + + +++++ L+ A +L+ +
Sbjct: 242 -PYENCLLVL---LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 549 LVEDK------KTLSYQIETLKRE-----------IASALHDR---------------DK 576
L D+ K L + + L RE IA ++ D
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 577 ALKEC------NDLRERFGEFTAAKEECQREAFHARFEYAMRMGERDSSRKERNEVEAAS 630
++ + R+ F + F + + S + +++
Sbjct: 358 IIESSLNVLEPAEYRKMFDRL-------------SVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 631 MDLFGKCQKERMDNLEANQEIDRLRKHTDKLQAELQDQSVNYLFILTESIQEAEVSKRRR 690
M + K K + +E + + + + EL+ + N + L SI + +
Sbjct: 405 MVVVNKLHKYSL--VEKQPKESTISIPS--IYLELKVKLEN-EYALHRSIVDHYNIPKTF 459
Query: 691 D-WAFSERDKIEVIDSYHTKHAGRHKRGKELDKNGGTWP-----------KARSGPVIEN 738
D +D Y H G H + E + + K R N
Sbjct: 460 DSDDLI----PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 739 GTGTILHP-------RRH-------KERLPLSALLNNPPSYKVN------DCIVRV 774
+G+IL+ + + ERL ++A+L+ P + N ++R+
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERL-VNAILDFLPKIEENLICSKYTDLLRI 570
Score = 68.3 bits (166), Expect = 2e-11
Identities = 88/735 (11%), Positives = 199/735 (27%), Gaps = 248/735 (33%)
Query: 44 HNYSHDSAIDTDLQEWDTEVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVK 103
H++ H +D + E + D+ D F N V ++ K
Sbjct: 2 HHHHH---MDFETGEHQYQYKDILSVFE---------------DAFVDNFDCKDVQDMPK 43
Query: 104 GSVTDGKLKKKEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNE-Y 162
++ K++ + + K+ R + L ++ E
Sbjct: 44 SILS-------------KEEIDHIIMSKDAVSGTL-----------RLFWTLLSKQEEMV 79
Query: 163 QEALAKVQQQHED------AVKEINTAMAVTNYLDGLQLNNSYDHGLTLESGLYICKISP 216
Q+ + +V + + ++ +M Y++ Q + Y+ + + ++ P
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE--QRDRLYNDNQVF-AKYNVSRLQP 136
Query: 217 GSLAAKEGSLAVGDRVLSINNRTVDGLSSAR-------EGMALLSDSPDVLTITTLKPTS 269
L + L R +G+ + + +
Sbjct: 137 ---------------YLKLRQ----ALLELRPAKNVLIDGVLGSGKT--WVALDVCL--- 172
Query: 270 LGEHSPRVHRKSVNSSTQTMP-----LYVRQHNETVRRGDHTLKELE--YYR--GQHQAA 320
S +V K M L ++ N + L+ L+ Y+ +
Sbjct: 173 ----SYKVQCK--------MDFKIFWLNLKNCNSP----ETVLEMLQKLLYQIDPNWTSR 216
Query: 321 MAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRS------------GCCTQPESDDA 368
S++++ L+ K + LL L + C +
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKP-YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 369 GSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCE 428
D L+ +A + ++ L T + L + + Q
Sbjct: 276 QVTDFLS----AATTTHISLDHHSMTL------------TPDEVKSL-LLKYLDCRPQD- 317
Query: 429 DMNQEKNTALRERNGLKQQCT----------AAIRQWDIALRERNEYQEALAKVQQQHED 478
L + T +IR + + + D
Sbjct: 318 ---------LPR-----EVLTTNPRRLSIIAESIRDG----LATWDN------WKHVNCD 353
Query: 479 AVKEINTAMAVRMKATKDLKRLTEERNAAMQEY--SL-IMSERDSVH---KEMEKL-SED 531
+ I ++++ L L ++ L + S H + + +
Sbjct: 354 KLTTI-------IESS--LNVLEPAE---YRKMFDRLSVF--PPSAHIPTILLSLIWFDV 399
Query: 532 LTQAVRKIKTLEMENKELVE-DKKTLSYQIETL------KREIASALHDRDKALKECNDL 584
+ V + ++ LVE K + I ++ K E ALH + + ++
Sbjct: 400 IKSDVMVVVN-KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS---IVDHYNI 455
Query: 585 RERF--GEFTAAKEE---CQREAFHARFEYAMRMGERDS------------SRKERNE-- 625
+ F + + H + + ER + +K R++
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLK---NIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 626 ---VEAASMDLFGKCQK------------ERM-----DNLEANQEIDRLRKHTDKLQAEL 665
+ ++ + + ER+ D L +E K+TD L+ L
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
Query: 666 QDQSVNYLFILTESI 680
+ +F
Sbjct: 573 MAED-EAIFEEAHKQ 586
Score = 63.3 bits (153), Expect = 6e-10
Identities = 81/581 (13%), Positives = 164/581 (28%), Gaps = 193/581 (33%)
Query: 604 HARFEYAMRMGERDSSRKERNEV--EAASMDLFGKCQ-----------KERMDN-LEANQ 649
H FE GE K+ V +A + C+ KE +D+ + +
Sbjct: 6 HMDFE----TGEHQYQYKDILSVFEDAFVDNF--DCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 650 EIDRLRKHTDKL---QAELQDQSV------NYLFILTESIQEAEVSKRRRDWAF-SERDK 699
+ + L Q E+ + V NY F L I+ + + +RD+
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-LMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 700 I----EVIDSYHTKHAGRHKRGKELDKN---------------GG---TW---PKARSGP 734
+ +V Y+ R + +L + G TW S
Sbjct: 119 LYNDNQVFAKYNVS---RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 735 VIENGTGTIL-----HPRRHKERL-PLSALLNN-------------PPSYKVNDCIVRVN 775
V I + + L L LL +++ +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 776 NLDCSNVSKR--MVLETVRSSGTSALMVIRRRRVGARSLVTTQ-----LQLNNSY----- 823
L S + +VL V+++ + + L+TT+ L+ +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAK-----AWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 824 -DH---GLTLESGLYIC----KISPGSL--AAKEGS-LAVG------------------- 853
DH LT + + P L + +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 854 --DRVLSINNRTVDGLSSA--R---EGMALLSDS----PDVLTI--TTLKPTSLGEHSPR 900
D++ +I +++ L A R + +++ S +L++ + + + +
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 901 VHRKSV-----NSSTQTMP-LYVRYGDQPPP---------DSYQVPKTSTKSHDPAKPSP 945
+H+ S+ ST ++P +Y+ + D Y +PKT S D P
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF-DSDDLIPPYL 469
Query: 946 ------------SSSGGGGKWDSLREK------MQG-VRRRGGGEEGKRSNRN------- 979
+ + R ++ +R S N
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 980 -------SSPPVTFEQEQVDAIAELDSFVHTHSPSDGSSPH 1013
+ P +E+ + + F+ + S +
Sbjct: 530 YKPYICDNDP--KYER----LVNAILDFLPKIEENLICSKY 564
Score = 63.3 bits (153), Expect = 6e-10
Identities = 64/455 (14%), Positives = 136/455 (29%), Gaps = 115/455 (25%)
Query: 461 ERNEYQEALAKVQQQHEDA------VKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLI 514
E E+Q + EDA K++ + +++ + ++A L
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS-KEEIDHIIMSKDAVSGTLRLF 68
Query: 515 MSERDSVHKEMEKLSEDLTQA-----VRKIKTLEMENKELVEDKKTLSYQIETL------ 563
+ + ++K E++ + + IKT E ++ + Q + L
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT---EQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 564 --KREI--ASALHDRDKALKECNDLRER----------FGEFTAAKEECQREAFHARFEY 609
K + +AL E LR G+ A + C + ++
Sbjct: 126 FAKYNVSRLQPYLKLRQALLE---LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 610 A---MRMGERDSSRKERNEVEA--ASMDLFGKCQKERMDN--LEANQEIDRLRKHTDKLQ 662
+ + +S ++ +D + + N L + LR+
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL----- 237
Query: 663 AELQDQS-VNYLFILTESIQEAEVSKRRRDWAFS--------ERDK--IEVIDSYHTKHA 711
L+ + N L +L +Q A+ AF+ R K + + + T H
Sbjct: 238 --LKSKPYENCLLVLLN-VQNAKAWN-----AFNLSCKILLTTRFKQVTDFLSAATTTH- 288
Query: 712 GRHKRGKELDKNGGTWPKARSGPVIENGTGTILH--PRRHKERLPL-----SALLNNPPS 764
LD + T ++ PR P + + + +
Sbjct: 289 ------ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 765 ----YKVNDC-----IVR--VNNLDCSNVSKR---------------MVLETV---RSSG 795
+K +C I+ +N L+ + K ++L +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 796 TSALMVIRRRRVGARSLVTTQLQLNNSYDHGLTLE 830
++V + + SLV Q + + + LE
Sbjct: 403 DVMVVVNKLHK---YSLVEKQPKESTISIPSIYLE 434
Score = 47.9 bits (113), Expect = 4e-05
Identities = 59/424 (13%), Positives = 117/424 (27%), Gaps = 143/424 (33%)
Query: 1292 LRAATAEEAAYELAKPADKVTVLAQYS---VERYNEVKDKPGDSFYMRALFSRTGDLGDA 1348
+ + A L L V+++ E + F M + +
Sbjct: 55 IMSKDAVSGTLRL------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 1349 LQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYKV---EEELLLRRS 1405
++ + D LY DN +F +KY V + L LR++
Sbjct: 109 TRMYIEQRDRLYNDNQVF-------------------------AKYNVSRLQPYLKLRQA 143
Query: 1406 LGDLES-----------------------DARRATRRSF------FRRKKHQRSDSKELA 1436
L +L + + F + + + L
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 1437 SF-SNINLGW-----YSDSGTLNEDSVSLASYQRVIRLNSEP----VLRPV--------- 1477
I+ W +S + L S+ A +R+++ VL V
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 1478 -----ILVGALSDTVTDKLLQDFPDKFVRCAPEIMHCPQAAMEKGLADNLFVDYRKKGAY 1532
IL+ T K + DF + H + +L + Y
Sbjct: 263 NLSCKILL-----TTRFKQVTDFLSAATTTHISLDH-HSMTLTPDEVKSLLLK------Y 310
Query: 1533 FECTSVAAVKDACDKNNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQI--KEIKEI 1590
+C ++ N +S+ E + R L + + K + ++ I
Sbjct: 311 LDCRPQDLPREVLTTNP----RRLSIIA-ESI-RDG------LATWDNWKHVNCDKLTTI 358
Query: 1591 RDGRYSSLDKVTAKAAKEMYEHGLKIECEHKHYISAVIPAGVNIAYMCTQIQTAVELEQS 1650
+ SSL+ + ++M++ +V P +I + L
Sbjct: 359 IE---SSLNVLEPAEYRKMFD-----RL-------SVFPPSAHI--------PTILLS-- 393
Query: 1651 KTLW 1654
+W
Sbjct: 394 -LIW 396
Score = 46.8 bits (110), Expect = 8e-05
Identities = 82/604 (13%), Positives = 141/604 (23%), Gaps = 204/604 (33%)
Query: 986 FEQEQVDAIAELDSFVHTHSPSDGSSPHYHK--APR---------SLASAHSHPG----G 1030
+ EQ ++ + + K R +L G
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 1031 PNNGAGGTSYETSSYHSYDAAGTFPRKKENQRFRIPSNPSVAFKTSGTKMSNGSI----- 1085
G+G T SY K + + S ++
Sbjct: 158 VL-GSGKTWVALDVCLSYKVQCKMDFK-------------IFWLNLKNCNSPETVLEMLQ 203
Query: 1086 -------EKTSERGSPMPTFHVEVLSPGLRQNKRNSLPDYCCSHKPHPGEL---RRVHID 1135
+ R + + S ++ R L KP+ L V
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHS--IQAELRRLL-----KSKPYENCLLVLLNVQNA 256
Query: 1136 KSVEPLGIQIQC--------------LDSGGVFVSTVSEHS-----------LASQVGLQ 1170
K+ + C L + ++ HS L + +
Sbjct: 257 KAWNAFNLS--CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 1171 VGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVS 1230
D EV N R + + A +R + + DK + SS
Sbjct: 315 PQDLPREVLTTNPRRLS--IIAESIRDGLATWDNWKHVNCDKLTTII---ESSLNVL--- 366
Query: 1231 GRGSGEPRFLMIETRKC-SNLGI------------SLVGGNAVGIYVHSVQSGSLGYSAG 1277
EP E RK L + SL+ + + V V + YS
Sbjct: 367 -----EPA----EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 1278 LRTGDR-ILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKPGDSFYMR 1336
+ + L EL + L + V+ YN K D
Sbjct: 418 EKQPKESTISIPSIYL----------ELKVKLENEYALHRSIVDHYNIPKTFDSDDLI-- 465
Query: 1337 ALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYKV 1396
Y+D ++ + H L + +
Sbjct: 466 ---------------------PPYLDQYFYSHIGHH----LKNIE-------------HP 487
Query: 1397 EEELLLRRSLGDLESDARRATRRSFFRRK-KHQRSDSKELASFSNINLGWYSDSGTLNED 1455
E L R D F +K +H + S N TL +
Sbjct: 488 ERMTLFRMVFLDF----------RFLEQKIRHDSTAWNASGSILN----------TLQQ- 526
Query: 1456 SVSLASYQRVIRLNSEPVLRPVILVGALSDTVTDKLLQDFPDKFVRCAPEIMHCP----- 1510
L Y+ I N D ++L+ D + ++
Sbjct: 527 ---LKFYKPYICDN---------------DPKYERLVNAILDFLPKIEENLICSKYTDLL 568
Query: 1511 QAAM 1514
+ A+
Sbjct: 569 RIAL 572
Score = 46.4 bits (109), Expect = 8e-05
Identities = 83/627 (13%), Positives = 149/627 (23%), Gaps = 226/627 (36%)
Query: 1062 RFRIPSNPSVAFKTSGTKMSNGSIEKTSERGSPMPTFHVEVLSPGLRQNKRNSLPDYCCS 1121
R PS + + ++ N ++V R L
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYND--------NQVFAKYNVS------RLQPYLKLRQALLE 146
Query: 1122 HKPHPGELRRVH----IDKSVEPLGIQ------IQCLDSGGVF---VSTVSEH------- 1161
+P L + K+ + + +QC +F + +
Sbjct: 147 LRPAKNVL--IDGVLGSGKTW--VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 1162 -SLASQVGLQVGDQLLEVCGIN-------------MRSATYQLAASVLR----------- 1196
L Q+ + I ++S Y+ VL
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 1197 --QC-------GNSITMLVQYSPDKYHELEGSGSSSAENES-------VSGRGSGEPRFL 1240
C +T + + + L+ + +E + R PR
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-- 320
Query: 1241 MIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTG----DRILEYNGTDLRAAT 1296
E + +S++ +R G D N L T
Sbjct: 321 --EVLTTNPRRLSIIA-------------------ESIRDGLATWDNWKHVNCDKLT--T 357
Query: 1297 AEEAAYELAKPADKVTVLAQYSVERYNEVKDKPGDSFYMRALFSRTGDLGDALQLRFHKD 1356
E++ + +PA+ R +F D L + F
Sbjct: 358 IIESSLNVLEPAE-------------------------YRKMF-------DRLSV-FPPS 384
Query: 1357 DILYVDNTMFNGVPGH-----WRAWLVDADGFRQQCGIIPSKYKVEEEL--LLRRSLGDL 1409
+P W K V + L + SL +
Sbjct: 385 ----AH------IPTILLSLIWFD---------------VIKSDVMVVVNKLHKYSL--V 417
Query: 1410 ESDARRATRR--SFFRRKKHQRSDSKEL-----ASFSNINLGWYSDSGTLNEDSVSLASY 1462
E + +T S + K + + L + NI + SD S+
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTFDSDDLIPPYLDQYFYSH 476
Query: 1463 ----QRVIRLNSEPVLRPVILVGALSDTVTDKLLQDFPDKFVRCAPEIMHCPQAAMEKGL 1518
+ I L + DF +F+ +I H A G
Sbjct: 477 IGHHLKNIEHPERMTLFR-------------MVFLDF--RFLE--QKIRHDSTAWNASGS 519
Query: 1519 ADNLFVDYRKKGAYFECTSVAAVKDACDKNNAHV--ILDVSLAGVERLHRQHVYPIVLLI 1576
N + Y + D K V ILD E L
Sbjct: 520 ILNTLQQLKFYKPY--------ICDNDPKYERLVNAILDFLPKIEENLICS--------- 562
Query: 1577 KFKSTKQI---KEIKEIRDGRYSSLDK 1600
K+ +I E + I + + + +
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 41.0 bits (95), Expect = 0.005
Identities = 45/283 (15%), Positives = 73/283 (25%), Gaps = 102/283 (36%)
Query: 1350 QLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYKVEEEL---LLRRSL 1406
+ ++ DIL V F + + D C V++ L + +
Sbjct: 13 EHQYQYKDILSVFEDAF----------VDNFD-----C------KDVQDMPKSILSKEEI 51
Query: 1407 GDL--ESDARRATRRSFFRRKKHQRSDSKE-LASFSNINLGW------------------ 1445
+ DA T R F+ Q ++ + IN +
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 1446 YSDS-GTLNEDSVSLASYQRVIRLNSEPV---------LRP---VILVG----------- 1481
Y + L D+ A Y V RL +P LRP V++ G
Sbjct: 112 YIEQRDRLYNDNQVFAKYN-VSRL--QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 1482 -ALSDTVTDKLLQDFPDK-----FVRCAPEIMHCPQAAMEKGLADNLFVDYRKKGAYFEC 1535
K+ K C + P+ +E L
Sbjct: 169 DVCLS---YKVQCKMDFKIFWLNLKNC-----NSPETVLEM--LQKLLYQIDPNW----- 213
Query: 1536 TSVAAVKDACD--KNNAHVILDVSLAGVERLHRQHVYPIVLLI 1576
D N I + + RL + Y LL+
Sbjct: 214 ------TSRSDHSSNIKLRIHSIQAE-LRRLLKSKPYENCLLV 249
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 68.0 bits (167), Expect = 5e-14
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 1140 PLGIQIQCLDSGG------VFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAAS 1193
P G ++Q GG + +S ++ S A+Q L GD ++ + G+N + T+ A +
Sbjct: 12 PWGFRLQ----GGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQN 67
Query: 1194 VLRQCGNSITMLVQYSP 1210
++ ++++ +Q S
Sbjct: 68 KIKSASYNLSLTLQKSK 84
Score = 51.5 bits (124), Expect = 3e-08
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 1250 LGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKP 1307
G L GG + + + + GS + L GD ++ +G + T EA ++
Sbjct: 13 WGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA 72
Query: 1308 ADKVTVLAQYS 1318
+ +++ Q S
Sbjct: 73 SYNLSLTLQKS 83
Score = 50.3 bits (121), Expect = 9e-08
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 208 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 263
L I +I+PGS AA+ L+ GD V++I+ D ++ E + + L++T
Sbjct: 26 PLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHL-EAQNKIKSASYNLSLT 79
Score = 50.3 bits (121), Expect = 9e-08
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 832 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887
L I +I+PGS AA+ L+ GD V++I+ D ++ E + + L++T
Sbjct: 26 PLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHL-EAQNKIKSASYNLSLT 79
Score = 34.9 bits (81), Expect = 0.024
Identities = 3/41 (7%), Positives = 19/41 (46%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
D +V ++ ++ ++ ++S+ + + +++ +
Sbjct: 44 SQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSK 84
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling,
trafficking protein; HET: HIS; 1.80A {Rattus norvegicus}
PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 68.5 bits (168), Expect = 5e-14
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 1128 ELRRVHIDKSVEPLGIQI-------QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVC 1179
++ + + K + LG I ++V+ + E A + G LQ+GD+LL V
Sbjct: 3 KIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN 62
Query: 1180 GINMRSATYQLAASVLRQCGNSITMLVQYSPDKY 1213
+++ T++ A + L+ + + + V Y
Sbjct: 63 SVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMY 96
Score = 57.0 bits (138), Expect = 7e-10
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 1237 PRFLMIETRKCSN-LGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEY 1287
+ + I+ K LG S+ GG IYV + G + G L+ GD++L
Sbjct: 2 EKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 1288 NGTDLRAATAEEAAYELAKPADKVTVL 1314
N L T EEA L +D V +
Sbjct: 62 NSVSLEEVTHEEAVTALKNTSDFVYLK 88
Score = 53.1 bits (128), Expect = 1e-08
Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
++ +Y+ KI G A K+G L +GD++L++N+ +++ ++ E + L ++ D + +
Sbjct: 32 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHE-EAVTALKNTSDFVYLKVA 90
Query: 266 KPTSLGEHSPRVHRKS 281
KPTS+ + R H
Sbjct: 91 KPTSM--YISRHHHHH 104
Score = 53.1 bits (128), Expect = 1e-08
Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
++ +Y+ KI G A K+G L +GD++L++N+ +++ ++ E + L ++ D + +
Sbjct: 32 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHE-EAVTALKNTSDFVYLKVA 90
Query: 890 KPTSLGEHSPRVHRKS 905
KPTS+ + R H
Sbjct: 91 KPTSM--YISRHHHHH 104
Score = 43.5 bits (103), Expect = 3e-05
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
+ LG + GG + P D+SIYV+ I++G DGKL+
Sbjct: 13 PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQ 53
Score = 33.5 bits (77), Expect = 0.13
Identities = 4/41 (9%), Positives = 19/41 (46%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
++ D ++ VN++ V+ + ++++ + + +
Sbjct: 53 QIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPT 93
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 68.1 bits (167), Expect = 6e-14
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 1128 ELRRVHIDKSVEPLGIQI-------QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVC 1179
+ V++ K + LG I ++++ + E A + G LQ+GD+LL V
Sbjct: 3 TIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVN 62
Query: 1180 GINMRSATYQLAASVLRQCGNSITMLVQ 1207
N++ ++ A + L+ + + + V
Sbjct: 63 NTNLQDVRHEEAVASLKNTSDMVYLKVA 90
Score = 55.4 bits (134), Expect = 2e-09
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 1250 LGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAA 1301
LG S+ GG IY+ + G G L+ GDR+L N T+L+ EEA
Sbjct: 16 LGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAV 75
Query: 1302 YELAKPADKVTVL 1314
L +D V +
Sbjct: 76 ASLKNTSDMVYLK 88
Score = 55.0 bits (133), Expect = 2e-09
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
++ +YI KI G A K+G L +GDR+L++NN + + E +A L ++ D++ +
Sbjct: 32 DNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHE-EAVASLKNTSDMVYLKVA 90
Query: 266 KPTS 269
KP S
Sbjct: 91 KPGS 94
Score = 55.0 bits (133), Expect = 2e-09
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
++ +YI KI G A K+G L +GDR+L++NN + + E +A L ++ D++ +
Sbjct: 32 DNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHE-EAVASLKNTSDMVYLKVA 90
Query: 890 KPTS 893
KP S
Sbjct: 91 KPGS 94
Score = 43.4 bits (103), Expect = 3e-05
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
+ LG + GG + P D+SIY++ I++G DG+L+
Sbjct: 13 PKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQ 53
Score = 32.6 bits (75), Expect = 0.17
Identities = 5/40 (12%), Positives = 20/40 (50%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRR 805
++ D ++ VNN + +V + +++++ + + +
Sbjct: 53 QIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP 92
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 68.1 bits (167), Expect = 6e-14
Identities = 14/88 (15%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 1125 HPGELRRVHIDK-SVEPLGIQIQCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGIN 1182
+ E V + K + + LG+ + + G ++ + + LQ GD + + G
Sbjct: 5 NSLEKFNVDLMKKAGKELGLSL-SPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDA 63
Query: 1183 MRSATYQLAASVLRQCGNSITMLVQYSP 1210
+ +Q++ ++ + ++M V
Sbjct: 64 LEGLPFQVSYALFKGANGKVSMEVTRPK 91
Score = 57.7 bits (140), Expect = 3e-10
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 1250 LGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPA 1308
LG+SL G + + G L+ GD I ++NG L + +
Sbjct: 22 LGLSLSPNEI-GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGAN 80
Query: 1309 DKVTVLAQYSVERY 1322
KV++ V R
Sbjct: 81 GKVSME----VTRP 90
Score = 57.3 bits (139), Expect = 4e-10
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 202 GLTL---ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD 258
GL+L E G I + G + L GD + N ++GL AL +
Sbjct: 23 GLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQ-VSYALFKGANG 81
Query: 259 --VLTITTLKPTS 269
+ +T KP +
Sbjct: 82 KVSMEVTRPKPAA 94
Score = 57.3 bits (139), Expect = 4e-10
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 826 GLTL---ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD 882
GL+L E G I + G + L GD + N ++GL AL +
Sbjct: 23 GLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQ-VSYALFKGANG 81
Query: 883 --VLTITTLKPTS 893
+ +T KP +
Sbjct: 82 KVSMEVTRPKPAA 94
Score = 35.0 bits (81), Expect = 0.024
Identities = 7/46 (15%), Positives = 16/46 (34%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARS 811
+ D I + N + ++ + + M + R + A S
Sbjct: 51 QRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVTRPKPAAAS 96
Score = 32.7 bits (75), Expect = 0.20
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 56 LQEWDTEVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLKK 113
+ E +++L + LGL L N+ ++++++G D KL++
Sbjct: 2 IPRNSLEKFNVDLMK-KAGKELGLSLSP--------NEIGCTIADLIQGQYPEIDSKLQR 52
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 67.8 bits (166), Expect = 6e-14
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 1129 LRRVHIDKS-VEPLGIQIQCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSA 1186
R V K+ EP+GI ++ + V+ + + + G L VGD++ E+ GI++ +
Sbjct: 2 SRLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQ 61
Query: 1187 TYQLAASVLRQCGNSITMLVQYSPDKY 1213
T + +LR+ SIT + S ++
Sbjct: 62 TVEQLQKMLREMRGSITFKIVPSYREF 88
Score = 53.9 bits (130), Expect = 5e-09
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 1241 MIETRKCSN--LGISLVGGNAVGIYVHSVQSGSLGY-SAGLRTGDRILEYNGTDLRAATA 1297
+++ +K ++ +GI+L V + G + + L GD I E NG + T
Sbjct: 4 LVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTV 63
Query: 1298 EEAAYELAKPADKVTV 1313
E+ L + +T
Sbjct: 64 EQLQKMLREMRGSITF 79
Score = 47.3 bits (113), Expect = 9e-07
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 202 GLTL----ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP 257
G+TL + + +I G + ++G+L VGD + IN +V + + +L +
Sbjct: 16 GITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVE-QLQKMLREMR 74
Query: 258 DVLTIT 263
+T
Sbjct: 75 GSITFK 80
Score = 47.3 bits (113), Expect = 9e-07
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 826 GLTL----ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP 881
G+TL + + +I G + ++G+L VGD + IN +V + + +L +
Sbjct: 16 GITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVE-QLQKMLREMR 74
Query: 882 DVLTIT 887
+T
Sbjct: 75 GSITFK 80
Score = 29.2 bits (66), Expect = 2.2
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 7/37 (18%)
Query: 72 SPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSVTD 108
+ +E +G+ L + V+ I+ G +
Sbjct: 10 NTDEPMGITLKMNELNH-------CIVARIMHGGMIH 39
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 68.9 bits (169), Expect = 6e-14
Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 1126 PGELRRVHIDKSVEPLGIQI-------QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLE 1177
+ + + K + LG I ++V+ + + A + G LQVGD+LL
Sbjct: 22 SMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLM 81
Query: 1178 VCGINMRSATYQLAASVLRQCGNSITMLVQ 1207
V ++ T++ A ++L+ + + V
Sbjct: 82 VNNYSLEEVTHEEAVAILKNTSEVVYLKVG 111
Score = 60.8 bits (148), Expect = 4e-11
Identities = 27/105 (25%), Positives = 37/105 (35%), Gaps = 9/105 (8%)
Query: 1219 SGSSSAENESVSGRGSGEPRFLMIETRKCSN-LGISLVGG-------NAVGIYVHSVQSG 1270
SS + + I+ K LG S+ GG IYV + G
Sbjct: 5 HHHSSGVDLGTENLYFQSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDG 64
Query: 1271 SLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 1314
G L+ GDR+L N L T EEA L ++ V +
Sbjct: 65 GAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLK 109
Score = 52.0 bits (125), Expect = 5e-08
Identities = 22/65 (33%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
++ +Y+ KI G A K+G L VGDR+L +NN +++ ++ E +A+L ++ +V+ +
Sbjct: 53 DNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHE-EAVAILKNTSEVVYLKVG 111
Query: 266 KPTSL 270
KPT++
Sbjct: 112 KPTTI 116
Score = 52.0 bits (125), Expect = 5e-08
Identities = 22/65 (33%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
++ +Y+ KI G A K+G L VGDR+L +NN +++ ++ E +A+L ++ +V+ +
Sbjct: 53 DNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHE-EAVAILKNTSEVVYLKVG 111
Query: 890 KPTSL 894
KPT++
Sbjct: 112 KPTTI 116
Score = 50.1 bits (120), Expect = 2e-07
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 39 LHSVSHNYSHDSAIDTDLQEWDTEVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYV 98
+H H+ S +L V+++ L + LG + GG + P D+SIYV
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMTVVEIKLFK--GPKGLGFSIAGGVGNQHIPGDNSIYV 58
Query: 99 SNIVKGSV--TDGKLK 112
+ I+ G DG+L+
Sbjct: 59 TKIIDGGAAQKDGRLQ 74
Score = 33.5 bits (77), Expect = 0.16
Identities = 6/41 (14%), Positives = 18/41 (43%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+V D ++ VNN V+ + ++++ + + +
Sbjct: 74 QVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPT 114
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 69.0 bits (169), Expect = 8e-14
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 11/121 (9%)
Query: 1124 PHPGELRRVHIDKS-VEPLGIQI-------QCLDSGGVFVSTVSEHSLASQVG-LQVGDQ 1174
E V + + + LGI+I ++ G++V +V S A G +QV D+
Sbjct: 11 SSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDK 70
Query: 1175 LLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGS 1234
++ V G+N++ VLR G + + + K ++ +VSG S
Sbjct: 71 IVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLV--RRKTSSSTSPLEPPSDRGTVSGPSS 128
Query: 1235 G 1235
G
Sbjct: 129 G 129
Score = 57.4 bits (139), Expect = 9e-10
Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 14/105 (13%)
Query: 1220 GSSSAENESVSGRGSGEPRFLMIETRKCSN--LGISLVGG-------NAVGIYVHSVQSG 1270
GSS S G S +E + LGI +VG A GIYV SV G
Sbjct: 1 GSSG----SSGGSDSSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPG 56
Query: 1271 SLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 1314
S Y G ++ D+I+ +G +++ + L V +
Sbjct: 57 SAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLT 101
Score = 54.0 bits (130), Expect = 1e-08
Identities = 16/82 (19%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
SG+Y+ + PGS A G + V D++++++ + G ++ + + +L ++ V+ +T +
Sbjct: 45 ASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANH-DVVEVLRNAGQVVHLTLV 103
Query: 266 KPTSLGEHSPRVHRKSVNSSTQ 287
+ + SP + +
Sbjct: 104 RRKTSSSTSPLEPPSDRGTVSG 125
Score = 54.0 bits (130), Expect = 1e-08
Identities = 16/82 (19%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
SG+Y+ + PGS A G + V D++++++ + G ++ + + +L ++ V+ +T +
Sbjct: 45 ASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANH-DVVEVLRNAGQVVHLTLV 103
Query: 890 KPTSLGEHSPRVHRKSVNSSTQ 911
+ + SP + +
Sbjct: 104 RRKTSSSTSPLEPPSDRGTVSG 125
Score = 46.3 bits (110), Expect = 6e-06
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 47 SHDSAIDTDLQEWDTEVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV 106
S S+ +D ++T +++ ++LG+ +VG S IYV +++ GS
Sbjct: 2 SSGSSGGSDSSLFETYNVELVR---KDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSA 58
Query: 107 --TDGKLK 112
+G ++
Sbjct: 59 AYHNGHIQ 66
Score = 37.0 bits (86), Expect = 0.009
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+VND IV V+ ++ + V+E +R++G + + RR+
Sbjct: 66 QVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRK 106
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 69.0 bits (169), Expect = 8e-14
Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 1121 SHKPHPGELRRVHIDK-SVEPLGIQI-----QCLDSGGVFVSTVSEHSLASQVG-LQVGD 1173
++ + I++ S LG + Q L +FV V S+A + L+ D
Sbjct: 18 QQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKEND 77
Query: 1174 QLLEVCGINM-RSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSS 1222
Q+L + + ++ ++Q A ++L+Q S+ ++V P SS
Sbjct: 78 QILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKSSTSGPSS 127
Score = 60.5 bits (147), Expect = 6e-11
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 9/120 (7%)
Query: 1219 SGSSSAENESVSGRGSGEPRFLMIETRKCSN--LGISLVGG-----NAVGIYVHSVQSGS 1271
SG + + SV + + + I+ + S LG S+V V I+V VQ GS
Sbjct: 6 SGLGNEDFNSVIQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGS 65
Query: 1272 LGYSAG-LRTGDRILEYNGTDL-RAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKP 1329
+ L+ D+IL N T L + + ++A L + + ++ P
Sbjct: 66 VADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKSSTSGP 125
Score = 52.1 bits (125), Expect = 6e-08
Identities = 22/115 (19%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 793 SSGTSAL-----MVIRRRRVGARSLVTTQLQLNNSYDHGLTL---------ESGLYICKI 838
SSG+S L + ++ R + ++ ++ G ++ + +++ +
Sbjct: 2 SSGSSGLGNEDFNSVIQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDV 61
Query: 839 SPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKPTS 893
PGS+A ++ L D++L+IN+ +D S ++ +ALL + L + +
Sbjct: 62 QPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPV 116
Score = 52.1 bits (125), Expect = 7e-08
Identities = 15/64 (23%), Positives = 34/64 (53%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
+ +++ + PGS+A ++ L D++L+IN+ +D S ++ +ALL + L +
Sbjct: 53 KVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVA 112
Query: 266 KPTS 269
+
Sbjct: 113 REPV 116
Score = 39.4 bits (92), Expect = 0.002
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 73 PNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
LG +V R I+V ++ GSV D +LK
Sbjct: 35 STGGLGFSVVALRSQN--LGKVDIFVKDVQPGSVADRDQRLK 74
Score = 32.8 bits (75), Expect = 0.28
Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 766 KVNDCIVRVNNLD-CSNVSKRMVLETVRSSGTSALMVIRRRRVGARSLVTT 815
K ND I+ +N+ N+S + + ++ + S +++ R V +S +
Sbjct: 74 KENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKSSTSG 124
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 68.6 bits (168), Expect = 8e-14
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 1128 ELRRVHIDKSVEPLGIQI--------QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEV 1178
EL V ++K E LGI I L+ G+FV TV+E A + G +QV D L+EV
Sbjct: 4 ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 63
Query: 1179 CGINMRSATYQLAASVLRQCGNSITMLV-QYSPDKYHELEGSGSSSAENE 1227
G ++ T AASVLR + ++ + P + E+ + E E
Sbjct: 64 DGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSEVAQLIQQTLEQE 113
Score = 60.5 bits (147), Expect = 5e-11
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 1235 GEPRFLMIETRKCSN-LGISLVGG--------NAVGIYVHSVQSGSLGYSAG-LRTGDRI 1284
G +E K S LGIS++G +GI+V +V G + G ++ D +
Sbjct: 1 GHMELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLL 60
Query: 1285 LEYNGTDLRAATAEEAAYELAKPADKVT-VLAQYSVERYNEVKDKPGDS 1332
+E +GT L T AA L +V ++ + +EV +
Sbjct: 61 VEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSEVAQLIQQT 109
Score = 51.2 bits (123), Expect = 8e-08
Identities = 11/76 (14%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV--LTITT 264
G+++ ++ G A ++G + V D ++ ++ ++ G++ + ++L ++ I
Sbjct: 35 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQS-FAASVLRNTKGRVRFMIGR 93
Query: 265 LKPTSLGEHSPRVHRK 280
+P E + + +
Sbjct: 94 ERPGEQSEVAQLIQQT 109
Score = 51.2 bits (123), Expect = 8e-08
Identities = 11/76 (14%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV--LTITT 888
G+++ ++ G A ++G + V D ++ ++ ++ G++ + ++L ++ I
Sbjct: 35 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQS-FAASVLRNTKGRVRFMIGR 93
Query: 889 LKPTSLGEHSPRVHRK 904
+P E + + +
Sbjct: 94 ERPGEQSEVAQLIQQT 109
Score = 37.7 bits (88), Expect = 0.004
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARSLVTTQLQ 818
+VND +V V+ V++ +R++ +I R R G +S V +Q
Sbjct: 55 QVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSEVAQLIQ 107
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 68.7 bits (168), Expect = 9e-14
Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 3/116 (2%)
Query: 1126 PGELRRVHIDK-SVEPLGIQI-QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGIN 1182
+ V + K V LG + + + V +S + A Q G +Q GD +L V
Sbjct: 6 EPNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRP 65
Query: 1183 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGEPR 1238
+ +Y A VLR + +++ + + + + + R +
Sbjct: 66 LVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQPLG 121
Score = 59.5 bits (144), Expect = 1e-10
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Query: 1231 GRGSGEPRFLMIETRKCSN--LGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILE 1286
G EP + + K LG + + + + + G +G ++ GD IL
Sbjct: 1 GSHMIEPNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILA 60
Query: 1287 YNGTDLRAATAEEAAYELAKPADKVTVL 1314
N L + + A L A + V+
Sbjct: 61 VNDRPLVDLSYDSALEVLRGIASETHVV 88
Score = 54.5 bits (131), Expect = 9e-09
Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 890
+ I + G A + G + GD +L++N+R + LS + +L + +
Sbjct: 33 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYD-SALEVLRGIASETHVVLIL 91
Query: 891 PTSLGEHSPRVHRKSVNSSTQTMPLYVRYGDQPPPDS 927
G + + + + +T+ + G PP +
Sbjct: 92 RGPEGFTTHLETTFTGDGTPKTIRVTQPLG--PPTKA 126
Score = 52.6 bits (126), Expect = 4e-08
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS----------SAREGMALLSDS 256
+ I + G A + G + GD +L++N+R + LS A E +L
Sbjct: 33 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR 92
Query: 257 PDVLTITTLKPTSLGEHSPRVHRKS 281
T L+ T G+ +P+ R +
Sbjct: 93 GPEGFTTHLETTFTGDGTPKTIRVT 117
Score = 34.8 bits (80), Expect = 0.050
Identities = 8/59 (13%), Positives = 20/59 (33%), Gaps = 9/59 (15%)
Query: 57 QEWDTEVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLKK 113
+ V+ + L LG + P + +S++++G G ++
Sbjct: 3 HMIEPNVISVRLFK-RKVGGLGFLVKERVSKP------PVIISDLIRGGAAEQSGLIQA 54
Score = 31.4 bits (71), Expect = 0.99
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+ D I+ VN+ ++S LE +R + +V+ R
Sbjct: 53 QAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRG 93
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural genomics;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 67.8 bits (166), Expect = 9e-14
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 11/104 (10%)
Query: 1127 GELRRVHIDKSVEPLGIQIQCLDSGG------VFVSTVSEHSLASQVGLQVGDQLLEVCG 1180
G V + P G ++ GG + ++ ++ S A+ L GD +L + G
Sbjct: 4 GSSGNVVLPGP-APWGFRLS----GGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDG 58
Query: 1181 INMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSA 1224
S T+ A ++ + + + + + + S S+
Sbjct: 59 FGTESMTHADAQDRIKAASYQLCLKIDRAETRLWSPQVSSGPSS 102
Score = 53.9 bits (130), Expect = 7e-09
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 261
G+ L I +I+PGS AA L GD +L+I+ + ++ A + + + L
Sbjct: 24 GIDFNQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHA-DAQDRIKAASYQLC 81
Query: 262 ITTLKPTSLGEHSPRVHRKS 281
+ + + SP+V
Sbjct: 82 LKIDRAET-RLWSPQVSSGP 100
Score = 53.9 bits (130), Expect = 7e-09
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 885
G+ L I +I+PGS AA L GD +L+I+ + ++ A + + + L
Sbjct: 24 GIDFNQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHA-DAQDRIKAASYQLC 81
Query: 886 ITTLKPTSLGEHSPRVHRKS 905
+ + + SP+V
Sbjct: 82 LKIDRAET-RLWSPQVSSGP 100
Score = 53.5 bits (129), Expect = 9e-09
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 1250 LGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKP 1307
G L GG + + + GS +A L GD IL +G + T +A +
Sbjct: 17 WGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA 76
Query: 1308 ADKVTVLAQYSVERYNEVKDKPGDS 1332
+ ++ + ++R P S
Sbjct: 77 SYQLCLK----IDRAETRLWSPQVS 97
Score = 34.6 bits (80), Expect = 0.039
Identities = 5/46 (10%), Positives = 17/46 (36%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARS 811
D I+ ++ +++ + ++++ + I R S
Sbjct: 48 CPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLWS 93
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density,
glutametergic receptors, carbohydrate metabolism, cycle,
cell division; HET: MES; 1.85A {Rattus norvegicus} PDB:
3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 70.0 bits (171), Expect = 9e-14
Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 15/138 (10%)
Query: 1078 TKMSNGSIEKTSERGSPMPTFHVEVLSPGLRQNKRNSLPDYCCSHKPHPGELRRVHIDKS 1137
S I+ S + E + P + +Y + EL V ++K
Sbjct: 36 IHFSTAPIQVFSTYSNEDYDRRNEDVDP------MAASAEYELEKRVERLELFPVELEKD 89
Query: 1138 VEPLGIQI--------QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATY 1188
E LGI I L+ G+FV TV+E A + G +QV D L+EV G ++ T
Sbjct: 90 SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQ 149
Query: 1189 QLAASVLRQCGNSITMLV 1206
AASVLR + ++
Sbjct: 150 SFAASVLRNTKGRVRFMI 167
Score = 58.8 bits (142), Expect = 7e-10
Identities = 30/130 (23%), Positives = 47/130 (36%), Gaps = 11/130 (8%)
Query: 1196 RQCGNSITMLVQYSPDKYHELEGSGSSSAE-NESVSGRGSGEPRFLMIETRKCSN-LGIS 1253
I + YS + Y A E + +E K S LGIS
Sbjct: 37 HFSTAPIQVFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGIS 96
Query: 1254 LVGG--------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYEL 1304
++G +GI+V +V G + G ++ D ++E +GT L T AA L
Sbjct: 97 IIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVL 156
Query: 1305 AKPADKVTVL 1314
+V +
Sbjct: 157 RNTKGRVRFM 166
Score = 48.8 bits (116), Expect = 2e-06
Identities = 8/57 (14%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 263
G+++ ++ G A ++G + V D ++ ++ ++ G++ + ++L ++ +
Sbjct: 111 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQS-FAASVLRNTKGRVRFM 166
Score = 48.8 bits (116), Expect = 2e-06
Identities = 8/57 (14%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887
G+++ ++ G A ++G + V D ++ ++ ++ G++ + ++L ++ +
Sbjct: 111 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQS-FAASVLRNTKGRVRFM 166
Score = 31.1 bits (70), Expect = 1.6
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRR 804
+VND +V V+ V++ +R++ +I R
Sbjct: 131 QVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGR 169
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 67.8 bits (166), Expect = 9e-14
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 1140 PLGIQIQCLDSGG------VFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAAS 1193
P G ++Q GG + +S++ + ASQ +++GD +L + GI+ + T+ A +
Sbjct: 16 PWGFRLQ----GGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQN 71
Query: 1194 VLRQCGNSITMLVQYSPDK-YHELEGSGSSS 1223
++ C S+ M +Q + E SG SS
Sbjct: 72 KIKACTGSLNMTLQRASAAAKSEPVSSGPSS 102
Score = 55.4 bits (134), Expect = 2e-09
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Query: 1248 SNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA 1305
+ G L GG + + + S++ G A +R GD +L +G + T EA ++
Sbjct: 15 APWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIK 74
Query: 1306 KPADKVTVLAQYSVERYNEVKDKPGDS 1332
+ + Q + G S
Sbjct: 75 ACTGSLNMTLQRASAAAKSEPVSSGPS 101
Score = 53.5 bits (129), Expect = 9e-09
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 261
G L I + G A++ + +GD VLSI+ + G++ E + L
Sbjct: 24 GKDFNMPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHL-EAQNKIKACTGSLN 81
Query: 262 ITTLKPTSLGEHSP 275
+T + ++ + P
Sbjct: 82 MTLQRASAAAKSEP 95
Score = 53.5 bits (129), Expect = 9e-09
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 885
G L I + G A++ + +GD VLSI+ + G++ E + L
Sbjct: 24 GKDFNMPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHL-EAQNKIKACTGSLN 81
Query: 886 ITTLKPTSLGEHSP 899
+T + ++ + P
Sbjct: 82 MTLQRASAAAKSEP 95
Score = 35.8 bits (83), Expect = 0.016
Identities = 6/46 (13%), Positives = 21/46 (45%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARS 811
++ D ++ ++ + ++ +++ S M ++R A+S
Sbjct: 48 RIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAKS 93
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 67.3 bits (165), Expect = 9e-14
Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 1124 PHPGELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINM 1183
G R V I K G + V V +V A + G++ GD++++V G +
Sbjct: 4 GSSGVQRCVIIQKDQHGFGFTVSG--DRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMV 61
Query: 1184 RSATYQLAASVLRQCGNSITMLVQYSP 1210
++++ +++ + + + S
Sbjct: 62 TNSSHLEVVKLIKSGAY-VALTLLGSS 87
Score = 59.6 bits (145), Expect = 5e-11
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 1230 SGRGSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNG 1289
S SG R ++I+ + G ++ G + V SV+ G AG++ GDRI++ NG
Sbjct: 2 SSGSSGVQRCVIIQ-KDQHGFGFTVSGDR--IVLVQSVRPGGAAMKAGVKEGDRIIKVNG 58
Query: 1290 TDLRAATAEEAAYELAKPADKVTVLAQYS 1318
T + ++ E +L K V + S
Sbjct: 59 TMVTNSSHLEVV-KLIKSGAYVALTLLGS 86
Score = 42.3 bits (100), Expect = 7e-05
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 202 GLTL--ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 244
G T+ + + + + PG A K G + GDR++ +N V S
Sbjct: 22 GFTVSGDRIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSS 65
Score = 42.3 bits (100), Expect = 7e-05
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 826 GLTL--ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 868
G T+ + + + + PG A K G + GDR++ +N V S
Sbjct: 22 GFTVSGDRIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSS 65
Score = 35.0 bits (81), Expect = 0.024
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRR 804
K D I++VN +N S V++ ++S AL ++
Sbjct: 48 KEGDRIIKVNGTMVTNSSHLEVVKLIKSGAYVALTLLGS 86
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural
genomics consort protein binding; 2.60A {Homo sapiens}
Length = 95
Score = 67.5 bits (165), Expect = 9e-14
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 1126 PGELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMR 1184
G + V++ KS + LG+ I G F+ + + + V + VGD + + G N+
Sbjct: 3 KGIEKEVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIV 62
Query: 1185 SATYQLAASVLRQCGNSIT 1203
+ A L++
Sbjct: 63 GWRHYDVAKKLKELKKEEL 81
Score = 51.3 bits (123), Expect = 6e-08
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 202 GLTLESG----LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP 257
GLT+ +I +I G + ++ VGD + SIN + G + L +
Sbjct: 19 GLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHY-DVAKKLKELK 77
Query: 258 --DVLTITTLKPTSLGE 272
++ T+ ++P E
Sbjct: 78 KEELFTMKLIEPKKSSE 94
Score = 51.3 bits (123), Expect = 6e-08
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 826 GLTLESG----LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP 881
GLT+ +I +I G + ++ VGD + SIN + G + L +
Sbjct: 19 GLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHY-DVAKKLKELK 77
Query: 882 --DVLTITTLKPTSLGE 896
++ T+ ++P E
Sbjct: 78 KEELFTMKLIEPKKSSE 94
Score = 47.0 bits (112), Expect = 2e-06
Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 1235 GEPRFLMIETRKCSN-LGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 1292
G + + K + LG+++ ++ ++ G + S + GD I NG ++
Sbjct: 4 GIEK--EVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENI 61
Query: 1293 RAATAEEAAYELAKPADKVTV 1313
+ A +L + +
Sbjct: 62 VGWRHYDVAKKLKELKKEELF 82
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A
2ain_A
Length = 106
Score = 67.7 bits (166), Expect = 1e-13
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 7/101 (6%)
Query: 1121 SHKPHPGELRRVHIDKSVEPLGIQI-----QCLDSGGVFVSTVSEHSLASQVG-LQVGDQ 1174
E+ V + K +G+ I D G++V +V + A G L GDQ
Sbjct: 4 GSDHKEPEIITVTLKKQ-NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQ 62
Query: 1175 LLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHE 1215
LL V G ++ + + AA ++ + + +T+ V E
Sbjct: 63 LLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAIRRE 103
Score = 67.0 bits (164), Expect = 2e-13
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 1234 SGEPRFLMIETRKCSNLGISLVGG-----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEY 1287
EP + + +K + +G+S+V + +GIYV SV G G L GD++L
Sbjct: 7 HKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSV 66
Query: 1288 NGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNE 1324
+G L + E AA + + + VT+ E
Sbjct: 67 DGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAIRRE 103
Score = 52.0 bits (125), Expect = 4e-08
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
+ G+Y+ + G A +G LA GD++LS++ R++ GLS L++ + V+T+
Sbjct: 37 KLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQE-RAAELMTRTSSVVTLEVA 95
Query: 266 KPTSL 270
K ++
Sbjct: 96 KQGAI 100
Score = 52.0 bits (125), Expect = 4e-08
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
+ G+Y+ + G A +G LA GD++LS++ R++ GLS L++ + V+T+
Sbjct: 37 KLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQE-RAAELMTRTSSVVTLEVA 95
Query: 890 KPTSL 894
K ++
Sbjct: 96 KQGAI 100
Score = 31.5 bits (72), Expect = 0.52
Identities = 4/41 (9%), Positives = 16/41 (39%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
D ++ V+ +S+ E + + + + + ++
Sbjct: 58 AAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQG 98
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 67.9 bits (166), Expect = 1e-13
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 1128 ELRRVHIDKSV--EPLGIQI-------QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLE 1177
++ R D +V LGI+I G +++ + A Q G L G Q+LE
Sbjct: 17 KITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLE 76
Query: 1178 VCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211
GI + S TY+ S++ Q + V+ +
Sbjct: 77 WNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLN 110
Score = 66.7 bits (163), Expect = 4e-13
Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 9/111 (8%)
Query: 1220 GSSSAENESVSGRGSGEPRFLMIETRKCSN-LGISLVGG-------NAVGIYVHSVQSGS 1271
GSS + + + + N LGI +VGG +G Y+ + G
Sbjct: 1 GSSGSSGHYIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGG 60
Query: 1272 LGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVER 1321
G L G ++LE+NG L + T EE +++ + + + + +
Sbjct: 61 SAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNM 111
Score = 52.8 bits (127), Expect = 3e-08
Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 10/116 (8%)
Query: 793 SSGTSALMVIRRRRVGARSLVTTQLQLNNSY---------DHGLTLESGLYICKISPGSL 843
SSG+S + R+ N G + E G YI KI PG
Sbjct: 2 SSGSSGHYIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGS 61
Query: 844 AAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKPTSLGEHSP 899
A + G L G +VL N + + E +++S I ++ S
Sbjct: 62 AEQTGKLMEGMQVLEWNGIPLTSKTYE-EVQSIISQQSGEAEICVRLDLNMSGPSS 116
Score = 52.1 bits (125), Expect = 4e-08
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
E G YI KI PG A + G L G +VL N + + E +++S I
Sbjct: 48 EIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYE-EVQSIISQQSGEAEICVR 106
Query: 266 KPTSLGEHSP 275
++ S
Sbjct: 107 LDLNMSGPSS 116
Score = 44.0 bits (104), Expect = 3e-05
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 72 SPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
LG+ +VGG++ P + + Y++ I+ G GKL
Sbjct: 27 VSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLM 69
Score = 33.2 bits (76), Expect = 0.18
Identities = 4/41 (9%), Positives = 13/41 (31%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
++ N + ++ + V + A + +R
Sbjct: 69 MEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDL 109
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 67.4 bits (165), Expect = 2e-13
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 1128 ELRRVHIDKS-VEPLGIQI-----------QCLDSGGVFVSTVSEHSLASQVG-LQVGDQ 1174
LR + I K+ E LGI I + G+F+S VS A + G L+VG +
Sbjct: 9 GLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLR 68
Query: 1175 LLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211
LLEV ++ T+ A +LR G+++T+LV +
Sbjct: 69 LLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFE 105
Score = 58.2 bits (141), Expect = 3e-10
Identities = 31/103 (30%), Positives = 38/103 (36%), Gaps = 14/103 (13%)
Query: 1233 GSGEPRFLMIETRKCSN--LGISLVGG-----------NAVGIYVHSVQSGSLGYSAG-L 1278
GS P + +K LGIS+ GG GI++ V G L
Sbjct: 4 GSSGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRL 63
Query: 1279 RTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVER 1321
R G R+LE N L T EA L D +TVL E
Sbjct: 64 RVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFES 106
Score = 51.2 bits (123), Expect = 8e-08
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
+ G++I K+SP A ++G L VG R+L +N +++ GL+ E + LL D LT+
Sbjct: 43 DEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHG-EAVQLLRSVGDTLTVLVC 101
Query: 266 KPTSLGEHS 274
G S
Sbjct: 102 DGFESGPSS 110
Score = 51.2 bits (123), Expect = 8e-08
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
+ G++I K+SP A ++G L VG R+L +N +++ GL+ E + LL D LT+
Sbjct: 43 DEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHG-EAVQLLRSVGDTLTVLVC 101
Query: 890 KPTSLGEHS 898
G S
Sbjct: 102 DGFESGPSS 110
Score = 40.0 bits (94), Expect = 6e-04
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 72 SPNEALGLELVGGRD----DPFYPNDSSIYVSNIVKGSVT--DGKLK 112
+P E LG+ + GG +P P D I++S + DG+L+
Sbjct: 18 APGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLR 64
Score = 34.3 bits (79), Expect = 0.064
Identities = 6/41 (14%), Positives = 18/41 (43%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+V ++ VN ++ ++ +RS G + +++
Sbjct: 64 RVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGF 104
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 71.6 bits (175), Expect = 2e-13
Identities = 44/264 (16%), Positives = 91/264 (34%), Gaps = 14/264 (5%)
Query: 423 IKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKE 482
IKK+ + + +K AL + + AA + E Q+ L + + + +
Sbjct: 4 IKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEA 63
Query: 483 INTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTL 542
+ A A K + + + L E D + + + L +A +
Sbjct: 64 LKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADES 123
Query: 543 EMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAAKEECQREA 602
E K + + ++E + ++ A H + A ++ ++ + + E + A
Sbjct: 124 ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERA 183
Query: 603 FHARFEYAMRMGERDSSRKERNEVEAASMDLFGKCQK--ERMDNL------------EAN 648
+ + A E + +EA + K K E + L A
Sbjct: 184 ELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAE 243
Query: 649 QEIDRLRKHTDKLQAELQDQSVNY 672
+ + +L K D L+ EL Q + Y
Sbjct: 244 RSVTKLEKSIDDLEDELYAQKLKY 267
Score = 63.9 bits (155), Expect = 8e-11
Identities = 35/280 (12%), Positives = 98/280 (35%), Gaps = 12/280 (4%)
Query: 308 KELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRSGCCTQPESDD 367
K+++ + + A+ + + A + + + L + L ++L
Sbjct: 6 KKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATED---------- 55
Query: 368 AGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQC 427
D ++ A K E + + L ++L+ AQE +A ++
Sbjct: 56 --ELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKL 113
Query: 428 EDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAM 487
E+ + + + R ++ + + +I + E + +++E+ +++
Sbjct: 114 EEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIE 173
Query: 488 AVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENK 547
+ +A + + + +E + + S+ + EK S+ + +IK L + K
Sbjct: 174 SDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLK 233
Query: 548 ELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRER 587
E + + L++ I + + + E
Sbjct: 234 EAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEE 273
Score = 62.4 bits (151), Expect = 2e-10
Identities = 32/275 (11%), Positives = 98/275 (35%), Gaps = 6/275 (2%)
Query: 384 KYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNG 443
K + +K + + R D+ A D+ + ++E+ ++K+ + E +
Sbjct: 7 KMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKD 66
Query: 444 LKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEE 503
+++ A ++ A + + +++ + A + + TA+ +A K
Sbjct: 67 AQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERG 126
Query: 504 RNAAMQEYSLIMSERDSV---HKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQI 560
+ + KE + ++ED RK + + + + D + +
Sbjct: 127 MKVIESRAQKDEEKMEIQEIQLKEAKHIAEDAD---RKYEEVARKLVIIESDLERAEERA 183
Query: 561 ETLKREIASALHDRDKALKECNDLRERFGEFTAAKEECQREAFHARFEYAMRMGERDSSR 620
E + + A + L + +++ +++ + E + + +
Sbjct: 184 ELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAE 243
Query: 621 KERNEVEAASMDLFGKCQKERMDNLEANQEIDRLR 655
+ ++E + DL + +++ ++E+D
Sbjct: 244 RSVTKLEKSIDDLEDELYAQKLKYKAISEELDHAL 278
Score = 62.0 bits (150), Expect = 4e-10
Identities = 35/263 (13%), Positives = 88/263 (33%), Gaps = 5/263 (1%)
Query: 294 RQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELL 353
R EL + + +A +L+ ++ + K + ++
Sbjct: 27 ADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVA 86
Query: 354 ELRSGCCTQPESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKL 413
L E D + +AL K E + D + + + +K+
Sbjct: 87 SLNRRIQLFEE-----ELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKM 141
Query: 414 ELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQ 473
E+ + ++ K ED +++ R+ ++ A + +++ + E +E + V
Sbjct: 142 EIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVT 201
Query: 474 QQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLT 533
+ + K +++K L+++ A + K ++ L ++L
Sbjct: 202 NNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY 261
Query: 534 QAVRKIKTLEMENKELVEDKKTL 556
K K + E + D ++
Sbjct: 262 AQKLKYKAISEELDHALNDMTSI 284
Score = 51.2 bits (122), Expect = 1e-06
Identities = 18/150 (12%), Positives = 54/150 (36%)
Query: 519 DSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKAL 578
D++ K+M+ L D A+ + E + K + K L ++ +L++++ + + DK
Sbjct: 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYS 61
Query: 579 KECNDLRERFGEFTAAKEECQREAFHARFEYAMRMGERDSSRKERNEVEAASMDLFGKCQ 638
+ D +E+ + + + + E D +++ +
Sbjct: 62 EALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAAD 121
Query: 639 KERMDNLEANQEIDRLRKHTDKLQAELQDQ 668
+ + + + + +L++
Sbjct: 122 ESERGMKVIESRAQKDEEKMEIQEIQLKEA 151
Score = 32.3 bits (73), Expect = 1.2
Identities = 36/311 (11%), Positives = 86/311 (27%), Gaps = 30/311 (9%)
Query: 120 IKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKE 179
IKK+ + + +K AL + + AA + E Q+ L + + + +
Sbjct: 4 IKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEA 63
Query: 180 INTAMAVTNYLDGLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRT 239
+ A +L + E+ + + E L L+ +
Sbjct: 64 LKDAQE--------KLELAEKKATDAEADVASLN---RRIQLFEEELDRAQERLATALQK 112
Query: 240 VDGLSSAREGMALLSDSPDVLTITTLKPTSLGEHSPRVHRKSVNSSTQTMPLYVRQHNET 299
++ A + + + + E + + + + R+
Sbjct: 113 LEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVII 172
Query: 300 VRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRSGC 359
+ + E G+ +++ SL ++ + + + E+
Sbjct: 173 ESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEI------- 225
Query: 360 CTQPESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEE 419
L+ A + E + L K DDL + K + EE
Sbjct: 226 ------------KVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEE 273
Query: 420 VARIKKQCEDM 430
+ +
Sbjct: 274 LDHALNDMTSI 284
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 66.6 bits (163), Expect = 2e-13
Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 1130 RRVHIDKSVEPLGIQIQCLDSG----GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRS 1185
R +H++K + G ++ G F+ V A + G+Q GD+L+ V G ++
Sbjct: 5 RCLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEG 64
Query: 1186 ATYQLAASVLRQCGNSITMLVQYSP--DKYHEL 1216
++ S ++ G+ +++ V P D+ +
Sbjct: 65 LGHEETVSRIQGQGSCVSLTVV-DPEADRETSV 96
Score = 56.2 bits (136), Expect = 9e-10
Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 15/105 (14%)
Query: 1234 SGEPRFLMIETRKCSNLGISLVGGNAV----GIYVHSVQSGSLGYSAGLRTGDRILEYNG 1289
S +PR L +E + G L + G ++ V G AG++ GDR++ G
Sbjct: 1 SMKPRCLHLE-KGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAG 59
Query: 1290 TDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKPGDSFY 1334
+ EE + V++ V D D
Sbjct: 60 ESVEGLGHEETVSRIQGQGSCVSLT----------VVDPEADRET 94
Score = 43.5 bits (103), Expect = 3e-05
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 200 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 259
+ GL G ++ ++ PG A K G + GDR++++ +V+GL E ++ +
Sbjct: 23 EKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHE-ETVSRIQGQGSC 80
Query: 260 LTITTLKP 267
+++T + P
Sbjct: 81 VSLTVVDP 88
Score = 43.5 bits (103), Expect = 3e-05
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 824 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 883
+ GL G ++ ++ PG A K G + GDR++++ +V+GL E ++ +
Sbjct: 23 EKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHE-ETVSRIQGQGSC 80
Query: 884 LTITTLKP 891
+++T + P
Sbjct: 81 VSLTVVDP 88
Score = 29.2 bits (66), Expect = 2.7
Identities = 6/40 (15%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTS-ALMVIRR 804
+ D +V V + + ++ G+ +L V+
Sbjct: 49 QAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDP 88
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 67.1 bits (164), Expect = 2e-13
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 1126 PGELRRVHIDKSVEPLGIQIQC-LDS--GGVFVSTVSEHSLASQVG-LQVGDQLLEVCGI 1181
G+ R+ K L + ++ +DS G V VS V E A + G + GD+++ + G
Sbjct: 15 AGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGK 74
Query: 1182 NMRSATYQLAASVLRQ----CGNSITMLVQYSPDKYHELEGS 1219
+ T A + L++ G+ I ++V P K ++ E +
Sbjct: 75 IVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDELT 116
Score = 59.8 bits (145), Expect = 1e-10
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 5/106 (4%)
Query: 1220 GSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG---NAVGIYVHSVQSGSLGYSA 1276
GS A + +G+ L + +K +L ++L GG + V +V G
Sbjct: 1 GSEGAATMFSPEQIAGKDVRL-LRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERH 59
Query: 1277 G-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVER 1321
G + GD I+ NG + T EA L K ++ V
Sbjct: 60 GGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAV 105
Score = 47.8 bits (114), Expect = 2e-06
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 202 GLTLESG-------LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 244
L LE G + + + G A + G + GD +++IN + V +
Sbjct: 31 DLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYT 80
Score = 47.8 bits (114), Expect = 2e-06
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 826 GLTLESG-------LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 868
L LE G + + + G A + G + GD +++IN + V +
Sbjct: 31 DLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYT 80
Score = 34.3 bits (79), Expect = 0.067
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 65 DMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLKK 113
D+ L + +L L L GG D P + VS + +G G + K
Sbjct: 18 DVRLLRIKKEGSLDLALEGGVDSPVGK----VVVSAVYEGGAAERHGGVVK 64
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 66.2 bits (162), Expect = 2e-13
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 1140 PLGIQIQCLDSGG------VFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAAS 1193
P G ++Q GG + +S ++ A+Q G+ VGD +L + G N S T+ A +
Sbjct: 14 PWGFRLQ----GGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQN 69
Query: 1194 VLRQCGNSITMLVQYSPDK 1212
+R CG +++ + +
Sbjct: 70 KIRACGERLSLGLSRAITS 88
Score = 53.5 bits (129), Expect = 7e-09
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 261
G L I +++PG AA+ G +AVGD VLSI+ L+ E + + L+
Sbjct: 22 GKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHI-EAQNKIRACGERLS 79
Query: 262 ITTLKPTS 269
+ + +
Sbjct: 80 LGLSRAIT 87
Score = 53.5 bits (129), Expect = 7e-09
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 885
G L I +++PG AA+ G +AVGD VLSI+ L+ E + + L+
Sbjct: 22 GKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHI-EAQNKIRACGERLS 79
Query: 886 ITTLKPTS 893
+ + +
Sbjct: 80 LGLSRAIT 87
Score = 51.9 bits (125), Expect = 2e-08
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 1250 LGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEA 1300
G L GG V + + + G AG+ GD +L +G + + T EA
Sbjct: 15 WGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEA 67
Score = 35.0 bits (81), Expect = 0.026
Identities = 5/40 (12%), Positives = 17/40 (42%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRR 805
V D ++ ++ + +++ +R+ G + + R
Sbjct: 46 AVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSRA 85
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 67.0 bits (164), Expect = 2e-13
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 1132 VHIDKSVEPLGIQI-------QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINM 1183
+ +K LGI I ++ G++V ++ S A+ G ++ D++L V +N+
Sbjct: 18 LFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNV 77
Query: 1184 RSATYQLAASVLRQCGNSITMLVQ 1207
+ VLR GN + +L+
Sbjct: 78 QGMAQSDVVEVLRNAGNPVRLLLI 101
Score = 58.5 bits (142), Expect = 2e-10
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Query: 1250 LGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAA 1301
LGIS+ G A GIYV S+ GS G + D+IL + +++ +
Sbjct: 27 LGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVV 86
Query: 1302 YELAKPADKVTVLAQYSVERYNEVKD 1327
L + V +L + R + +
Sbjct: 87 EVLRNAGNPVRLL----LIRRLPLLE 108
Score = 53.9 bits (130), Expect = 7e-09
Identities = 15/67 (22%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
+G+Y+ + PGS AA +G + D++L +++ V G++ + + + +L ++ + + + +
Sbjct: 43 ATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQS-DVVEVLRNAGNPVRLLLI 101
Query: 266 KPTSLGE 272
+ L E
Sbjct: 102 RRLPLLE 108
Score = 53.9 bits (130), Expect = 7e-09
Identities = 15/67 (22%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
+G+Y+ + PGS AA +G + D++L +++ V G++ + + + +L ++ + + + +
Sbjct: 43 ATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQS-DVVEVLRNAGNPVRLLLI 101
Query: 890 KPTSLGE 896
+ L E
Sbjct: 102 RRLPLLE 108
Score = 47.7 bits (114), Expect = 1e-06
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 43 SHNYSHDSAIDTDLQEWDTEVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIV 102
SH YS S + + L +LG+ + G RD + IYV +++
Sbjct: 2 SHGYSDAS---------GFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLI 52
Query: 103 KGSV--TDGKLK 112
GS DG+++
Sbjct: 53 PGSAAALDGRIE 64
Score = 38.5 bits (90), Expect = 0.002
Identities = 11/41 (26%), Positives = 27/41 (65%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+ ND I+RV++++ +++ V+E +R++G +++ RR
Sbjct: 64 EPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRL 104
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 67.2 bits (164), Expect = 3e-13
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
Query: 1126 PGELRRVHIDKS-VEPLGIQIQ------CLDSGGVFVSTVSEHSLASQVG-LQVGDQLLE 1177
E V + V GIQ+Q S +S + S A + G LQ+GD+++
Sbjct: 13 HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMA 72
Query: 1178 VCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELE---GSGSSSA 1224
+ GI +T++ A +LR + + ++ D + GSG SS
Sbjct: 73 INGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGSGPSSG 122
Score = 59.5 bits (144), Expect = 1e-10
Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 11/122 (9%)
Query: 1218 GSGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG------NAVGIYVHSVQSGS 1271
GS SS + V E +++ + GI L G + + +++ S
Sbjct: 1 GSSGSSGAGQVVHT----ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADS 56
Query: 1272 LGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKPG 1330
G L+ GDR++ NG +T EEA L + V + + V G
Sbjct: 57 PAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSG 116
Query: 1331 DS 1332
Sbjct: 117 SG 118
Score = 58.7 bits (142), Expect = 3e-10
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 192 GLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMA 251
G+QL S TL S I I S A + G L +GDRV++IN + + E
Sbjct: 30 GIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFE-EANQ 88
Query: 252 LLSDSPDVLTIT 263
LL DS +T
Sbjct: 89 LLRDSSITSKVT 100
Score = 55.6 bits (134), Expect = 3e-09
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 824 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 883
TL S I I S A + G L +GDRV++IN + + E LL DS
Sbjct: 38 FATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFE-EANQLLRDSSIT 96
Query: 884 LTIT 887
+T
Sbjct: 97 SKVT 100
Score = 34.8 bits (80), Expect = 0.056
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 73 PNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSVTD--GKLK 112
P G++L G S +S I S + G L+
Sbjct: 25 PVTGFGIQLQGSVFAT-ETLSSPPLISYIEADSPAERCGVLQ 65
Score = 34.1 bits (78), Expect = 0.11
Identities = 6/48 (12%), Positives = 22/48 (45%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARSLV 813
++ D ++ +N + + + + +R S ++ + + A S++
Sbjct: 65 QIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVI 112
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 66.2 bits (162), Expect = 3e-13
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 1126 PGELRRVHIDKSVEPLGIQIQCLDSGG------VFVSTVSEHSLASQVGLQVGDQLLEVC 1179
V + P G +I GG + V+ V+E A L+ GD ++ +
Sbjct: 4 GSSGLTVDVAGP-APWGFRIS----GGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAIN 58
Query: 1180 GINMRSATYQLAASVLRQCGNSITMLVQ 1207
G + + + A S +RQ + + + +
Sbjct: 59 GQSAENMLHAEAQSKIRQSASPLRLQLD 86
Score = 56.2 bits (136), Expect = 8e-10
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 1233 GSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT 1290
GS L ++ + G + GG I V V +A LR GD I+ NG
Sbjct: 1 GSSGSSGLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQ 60
Query: 1291 DLRAATAEEA 1300
EA
Sbjct: 61 SAENMLHAEA 70
Score = 51.9 bits (125), Expect = 3e-08
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 261
G + + + K++ A L GD +++IN ++ + + A E + + S L
Sbjct: 25 GRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHA-EAQSKIRQSASPLR 82
Query: 262 IT 263
+
Sbjct: 83 LQ 84
Score = 51.9 bits (125), Expect = 3e-08
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 885
G + + + K++ A L GD +++IN ++ + + A E + + S L
Sbjct: 25 GRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHA-EAQSKIRQSASPLR 82
Query: 886 IT 887
+
Sbjct: 83 LQ 84
Score = 35.7 bits (83), Expect = 0.013
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+ D IV +N N+ +R S + + + R
Sbjct: 49 RPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSS 89
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 66.4 bits (162), Expect = 3e-13
Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 3/106 (2%)
Query: 1108 RQNKRNSLPDYCCSHKPHPGELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQV 1167
+ +S D + R + LG ++ + V V + + AS
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMPRSIRFTAEEGDLGFTLRG--NAPVQVHFLDPYCSASVA 60
Query: 1168 GLQVGDQLLEVCGINMRSATYQLAASVLRQCG-NSITMLVQYSPDK 1212
G + GD ++ + ++ + T +L+ G + I M V D+
Sbjct: 61 GAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLLDE 106
Score = 56.0 bits (135), Expect = 2e-09
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Query: 1221 SSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRT 1280
SS + + + PR + T + +LG +L G + VH + AG R
Sbjct: 8 SSGVDLGTENLYFQSMPRSIRF-TAEEGDLGFTLRGNA--PVQVHFLDPYCSASVAGARE 64
Query: 1281 GDRILEYNGTDLRAATAEEAAYELAKPADKVTV 1313
GD I+ D + T E +L K + +
Sbjct: 65 GDYIVSIQLVDCKWLTLSEVM-KLLKSFGEDEI 96
Score = 42.5 bits (100), Expect = 8e-05
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 202 GLTL--ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALL-SDSPD 258
G TL + + + + P A+ G GD ++SI L+ + E M LL S D
Sbjct: 37 GFTLRGNAPVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLS-EVMKLLKSFGED 94
Query: 259 VLTITTLKP 267
+ + +
Sbjct: 95 EIEMKVVSL 103
Score = 42.5 bits (100), Expect = 8e-05
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 826 GLTL--ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALL-SDSPD 882
G TL + + + + P A+ G GD ++SI L+ + E M LL S D
Sbjct: 37 GFTLRGNAPVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLS-EVMKLLKSFGED 94
Query: 883 VLTITTLKP 891
+ + +
Sbjct: 95 EIEMKVVSL 103
Score = 30.2 bits (68), Expect = 1.8
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSAL 799
+ D IV + +DC ++ V++ ++S G +
Sbjct: 63 REGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEI 96
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 66.7 bits (163), Expect = 3e-13
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Query: 1136 KSVEPLGIQI-QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAAS 1193
+ V LG + + + V +S + A Q G +Q GD +L V + +Y A
Sbjct: 10 RKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALE 69
Query: 1194 VLRQCGNSITMLVQY--SPDKYHELEGSGSSSAENESVS 1230
VLR + +++ LE + + +++
Sbjct: 70 VLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIR 108
Score = 55.9 bits (135), Expect = 2e-09
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 1250 LGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP 1307
LG + + + + + G +G ++ GD IL N L + + A L
Sbjct: 15 LGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI 74
Query: 1308 ADKVTVL 1314
A + V+
Sbjct: 75 ASETHVV 81
Score = 53.6 bits (129), Expect = 1e-08
Identities = 14/86 (16%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
+ + I + G A + G + GD +L++N+R + LS + +L + +
Sbjct: 25 KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYD-SALEVLRGIASETHVVLI 83
Query: 266 KPTSLGEHSPRVHRKSVNSSTQTMPL 291
G + + + + +T+ +
Sbjct: 84 LRGPEGFTTHLETTFTGDGTPKTIRV 109
Score = 53.6 bits (129), Expect = 1e-08
Identities = 14/86 (16%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
+ + I + G A + G + GD +L++N+R + LS + +L + +
Sbjct: 25 KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYD-SALEVLRGIASETHVVLI 83
Query: 890 KPTSLGEHSPRVHRKSVNSSTQTMPL 915
G + + + + +T+ +
Sbjct: 84 LRGPEGFTTHLETTFTGDGTPKTIRV 109
Score = 32.5 bits (74), Expect = 0.33
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 73 PNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
LG + P + +S++++G G ++
Sbjct: 11 KVGGLGFLVKERVSKP------PVIISDLIRGGAAEQSGLIQ 46
Score = 32.1 bits (73), Expect = 0.46
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+ D I+ VN+ ++S LE +R + +V+ R
Sbjct: 46 QAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRG 86
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding
domain, signaling protein; HET: GNP; 2.10A {Mus musculus}
SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Length = 128
Score = 67.2 bits (164), Expect = 3e-13
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 1126 PGELRRVHIDK--SVEPLGIQI-----------QCLDSGGVFVSTVSEHSLASQVG-LQV 1171
P RRV + K + +PLG I G+F+S + LA G L V
Sbjct: 27 PETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAV 86
Query: 1172 GDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDK 1212
D++LEV GI + + ++ ++ + V+ + +
Sbjct: 87 NDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR 127
Score = 54.5 bits (131), Expect = 8e-09
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 196 NNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSD 255
HGL G++I ++ PG LA G LAV D VL +N V G S + ++
Sbjct: 54 VRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLD-QVTDMMIA 112
Query: 256 SPDVLTITTLKPTS 269
+ L I T++P +
Sbjct: 113 NSRNLII-TVRPAN 125
Score = 54.5 bits (131), Expect = 8e-09
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 820 NNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSD 879
HGL G++I ++ PG LA G LAV D VL +N V G S + ++
Sbjct: 54 VRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLD-QVTDMMIA 112
Query: 880 SPDVLTITTLKPTS 893
+ L I T++P +
Sbjct: 113 NSRNLII-TVRPAN 125
Score = 54.5 bits (131), Expect = 1e-08
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
Query: 1250 LGISLVGGNAV-----------GIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATA 1297
LG + G++V GI++ + G L S G L D +LE NG ++ +
Sbjct: 44 LGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSL 103
Query: 1298 EEAAYELAKPADKVTVLAQYSVER 1321
++ + + + + + + +R
Sbjct: 104 DQVTDMMIANSRNLIITVRPANQR 127
Score = 38.7 bits (90), Expect = 0.003
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 8/73 (10%)
Query: 46 YSHDSAIDTDLQEWDTEVLDMNLTNLSPNEALGLELVGGRDDPFYPN----DSSIYVSNI 101
S ID D+ + L + LG + G P+ I++S +
Sbjct: 15 RPVSSIIDVDILPETHRR--VRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRL 72
Query: 102 VKGSV--TDGKLK 112
V G + + G L
Sbjct: 73 VPGGLAQSTGLLA 85
Score = 30.2 bits (68), Expect = 2.2
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRR 804
VND ++ VN ++ S S V + + ++ + ++ +R
Sbjct: 85 AVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRP 123
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 66.3 bits (162), Expect = 4e-13
Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 8/98 (8%)
Query: 1136 KSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASV 1194
K+ + LG+ + + G ++ + + LQ GD + + G + +Q+ ++
Sbjct: 11 KAGKELGLSLSPNEIG-CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYAL 69
Query: 1195 LRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGR 1232
+ ++M V GSG S + + R
Sbjct: 70 FKGANGKVSMEVTRPK------PGSGGSGSLVPRLLRR 101
Score = 58.2 bits (141), Expect = 3e-10
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 6/82 (7%)
Query: 1250 LGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPA 1308
LG+SL G + + G L+ GD I ++NG L +
Sbjct: 16 LGLSLSPNEI-GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGAN 74
Query: 1309 DKVTVLAQYSVERYNEVKDKPG 1330
KV++ V R G
Sbjct: 75 GKVSME----VTRPKPGSGGSG 92
Score = 55.1 bits (133), Expect = 3e-09
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 202 GLTL---ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD 258
GL+L E G I + G + L GD + N ++GL AL +
Sbjct: 17 GLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQ-VCYALFKGANG 75
Query: 259 VLTITTLKPTSLGEHSPR 276
+++ +P S
Sbjct: 76 KVSMEVTRPKPGSGGSGS 93
Score = 55.1 bits (133), Expect = 3e-09
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 826 GLTL---ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD 882
GL+L E G I + G + L GD + N ++GL AL +
Sbjct: 17 GLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQ-VCYALFKGANG 75
Query: 883 VLTITTLKPTSLGEHSPR 900
+++ +P S
Sbjct: 76 KVSMEVTRPKPGSGGSGS 93
Score = 32.7 bits (75), Expect = 0.20
Identities = 6/46 (13%), Positives = 16/46 (34%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARS 811
+ D I + N + ++ + + M + R + G+
Sbjct: 45 QRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKPGSGG 90
Score = 31.2 bits (71), Expect = 0.75
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 10/43 (23%)
Query: 73 PNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLKK 113
+ LGL L N+ ++++++G D KL++
Sbjct: 12 AGKELGLSLSP--------NEIGCTIADLIQGQYPEIDSKLQR 46
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 66.7 bits (163), Expect = 4e-13
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 1120 CSHKPHPGELRRVHIDK-SVEPLGIQIQC-LDSGGVFVSTVSEHSLASQVGLQVGDQLLE 1177
S R + K + G ++ D+ G + + E S A + GL GD++L
Sbjct: 5 SSGMASTFNPRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLR 64
Query: 1178 VCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSG 1220
+ G+ + + ++R+ GNS+T+LV D Y + +
Sbjct: 65 INGVFVDKEEHAQVVELVRKSGNSVTLLVL-DGDSYEKAVKNQ 106
Score = 61.3 bits (149), Expect = 3e-11
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 9/109 (8%)
Query: 1220 GSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGL 1278
GSS + + + PR + ++ N G L + G + ++ GS AGL
Sbjct: 1 GSSGSSGMASTFN----PRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGL 56
Query: 1279 RTGDRILEYNGTDLRAATAEEAAYELAKPA-DKVT--VLAQYSVERYNE 1324
GDR+L NG + + EL + + + VT VL S E+ +
Sbjct: 57 LDGDRVLRINGVFVDKEEHAQVV-ELVRKSGNSVTLLVLDGDSYEKAVK 104
Score = 50.9 bits (122), Expect = 1e-07
Identities = 32/106 (30%), Positives = 41/106 (38%), Gaps = 14/106 (13%)
Query: 793 SSGTSALMVIRRRRVGARSLVTTQLQLNNSYDHGLTL-----ESGLYICKISPGSLAAKE 847
SSG+S + R Q +Y G L G I I GS A K
Sbjct: 2 SSGSSGMASTFNPR-----ECKLSKQEGQNY--GFFLRIEKDTDGHLIRVIEEGSPAEKA 54
Query: 848 GSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKPTS 893
G L GDRVL IN VD + + L+ S + +T+ L S
Sbjct: 55 G-LLDGDRVLRINGVFVDKEEH-AQVVELVRKSGNSVTLLVLDGDS 98
Score = 46.7 bits (111), Expect = 3e-06
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 201 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 260
G I I GS A K G L GDRVL IN VD + + L+ S + +
Sbjct: 32 RIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEH-AQVVELVRKSGNSV 89
Query: 261 TITTLKPTS 269
T+ L S
Sbjct: 90 TLLVLDGDS 98
Score = 29.4 bits (66), Expect = 3.1
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTS-ALMVIRR 804
D ++R+N + V+E VR SG S L+V+
Sbjct: 57 LDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 96
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 65.9 bits (161), Expect = 4e-13
Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 1121 SHKPHPGELRRVHIDKS-VEPLGIQIQCLDSG----GVFVSTVSEHSLASQVG-LQVGDQ 1174
S R VH++K E LG+ + G ++ + A + G L +GD+
Sbjct: 2 SSGSSGDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDR 61
Query: 1175 LLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211
L + G ++ + +R+ + ++ +
Sbjct: 62 LTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHC 98
Score = 55.9 bits (135), Expect = 2e-09
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 205 LESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 263
L I + G A + G+L++GDR+ +IN ++ GL A A + ++ ++T
Sbjct: 35 LLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLA-ACQAAVRETKSQTSVT 92
Score = 55.9 bits (135), Expect = 2e-09
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 829 LESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887
L I + G A + G+L++GDR+ +IN ++ GL A A + ++ ++T
Sbjct: 35 LLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLA-ACQAAVRETKSQTSVT 92
Score = 54.4 bits (131), Expect = 5e-09
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 1230 SGRGSGEPRFLMIETRKCSNLGISLVGG----NAVGIYVHSVQSGSLGYSAG-LRTGDRI 1284
SG R + +E R+ LG++LV + ++ G +G L GDR+
Sbjct: 3 SGSSGDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRL 62
Query: 1285 LEYNGTDLRAATAEEAAYELAKPADKVTV 1313
NGT L + + + +V
Sbjct: 63 TAINGTSLVGLPLAACQAAVRETKSQTSV 91
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 65.4 bits (160), Expect = 4e-13
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 1140 PLGIQIQCLDSGG------VFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAAS 1193
P G +I GG + V+ V+E A L+ GD ++ + G + + A S
Sbjct: 13 PWGFRIT----GGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQS 68
Query: 1194 VLRQCGNSITMLVQ 1207
+RQ + + + +
Sbjct: 69 KIRQSPSPLRLQLD 82
Score = 56.1 bits (136), Expect = 8e-10
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 261
G + + + K++ A L GD +++IN + +G+ A E + + SP L
Sbjct: 21 GRDFHTPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHA-EAQSKIRQSPSPLR 78
Query: 262 ITTLKPTSL 270
+ + TSL
Sbjct: 79 LQLDRITSL 87
Score = 56.1 bits (136), Expect = 8e-10
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 885
G + + + K++ A L GD +++IN + +G+ A E + + SP L
Sbjct: 21 GRDFHTPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHA-EAQSKIRQSPSPLR 78
Query: 886 ITTLKPTSL 894
+ + TSL
Sbjct: 79 LQLDRITSL 87
Score = 55.0 bits (133), Expect = 2e-09
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 1250 LGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKP 1307
G + GG I V V A LR GD I+ NG EA ++ +
Sbjct: 14 WGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQS 73
Query: 1308 ADKVTVLAQYSVERYNEV 1325
+ + ++R +
Sbjct: 74 PSPLRLQ----LDRITSL 87
Score = 34.6 bits (80), Expect = 0.029
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRR 804
+ D IV +N + +R S + + + R
Sbjct: 45 RPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDR 83
Score = 29.2 bits (66), Expect = 2.9
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 66 MNLT-NLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSVTD-GKLKKKEEVARI 120
M LT +++ G + GGRD + I V+ + + L+ + + I
Sbjct: 2 MALTVDVAGPAPWGFRITGGRD-----FHTPIMVTKVAERGKAKDADLRPGDIIVAI 53
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 64.6 bits (158), Expect = 7e-13
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 1130 RRVHIDK-SVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATY 1188
R + + K S +G + G ++++ + S A++ GL + E+ G N+
Sbjct: 6 RTITMHKDSTGHVGFIFK----NGK-ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKD 60
Query: 1189 QLAASVLRQCGNSITMLV 1206
A +L G +T+ +
Sbjct: 61 SQIADILSTSGTVVTITI 78
Score = 56.9 bits (138), Expect = 4e-10
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 1233 GSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 1292
G+ +PR + + ++G G + S+ S GL T I E NG ++
Sbjct: 1 GAMDPRTITMHKDSTGHVGFIFKNGK-----ITSIVKDSSAARNGLLTEHNICEINGQNV 55
Query: 1293 RAATAEEAAYELAKPADKVTVL 1314
+ A L+ VT+
Sbjct: 56 IGLKDSQIADILSTSGTVVTIT 77
Score = 50.4 bits (121), Expect = 7e-08
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 808 GARSLVTTQLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGL 867
GA T + +++ G ++G I I S AA+ G L + IN + V GL
Sbjct: 1 GAMDPRTITMHKDSTGHVGFIFKNG-KITSIVKDSSAARNG-LLTEHNICEINGQNVIGL 58
Query: 868 SSAREGMALLSDSPDVLTITTL 889
+ + +LS S V+TIT +
Sbjct: 59 KDS-QIADILSTSGTVVTITIM 79
Score = 50.4 bits (121), Expect = 8e-08
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 193 LQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMAL 252
+ +++ G ++G I I S AA+ G L + IN + V GL + + +
Sbjct: 10 MHKDSTGHVGFIFKNG-KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDS-QIADI 66
Query: 253 LSDSPDVLTITTL 265
LS S V+TIT +
Sbjct: 67 LSTSGTVVTITIM 79
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB:
3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 66.6 bits (162), Expect = 8e-13
Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 1108 RQNKRNSLPDYCCSHKPHPGELRRVHIDKSV----EPLGIQI--------------QCLD 1149
+ +S D + ++RV I K LG I +
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKT 62
Query: 1150 SGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYS 1209
G++V+ VSE A GLQ+GD++++V G +M T+ A L + + L+
Sbjct: 63 DKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR 122
Query: 1210 PDKYHELEGSGSSSAE 1225
++ S S E
Sbjct: 123 QSLQKAVQQSMLSETE 138
Score = 62.7 bits (152), Expect = 2e-11
Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 14/115 (12%)
Query: 1214 HELEGSGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG--------------NA 1259
H SG + + LG S+ GG
Sbjct: 4 HHHHSSGVDLGTENLYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTD 63
Query: 1260 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 1314
GIYV V G AGL+ GD+I++ NG D+ T ++A L K +++V L
Sbjct: 64 KGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRL 118
Score = 46.2 bits (109), Expect = 8e-06
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 208 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 267
G+Y+ ++S G A G L +GD+++ +N + ++ + L S +V+ + +
Sbjct: 65 GIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 123
Query: 268 TSLGEHSPRVHRKSVNSSTQ 287
+ + ++S+ S T+
Sbjct: 124 S-----LQKAVQQSMLSETE 138
Score = 46.2 bits (109), Expect = 8e-06
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 832 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 891
G+Y+ ++S G A G L +GD+++ +N + ++ + L S +V+ + +
Sbjct: 65 GIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 123
Query: 892 TSLGEHSPRVHRKSVNSSTQ 911
+ + ++S+ S T+
Sbjct: 124 S-----LQKAVQQSMLSETE 138
Score = 33.9 bits (77), Expect = 0.13
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 42 VSHNYSHDSAID--TDLQEWDTEVLDMNLTNLS--PNEALGLELVGGRDDPFYPN----- 92
+ H++ H S +D T+ + + V + + L N LG + GG D N
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSED 60
Query: 93 --DSSIYVSNIVKGSVTD 108
D IYV+ + +G +
Sbjct: 61 KTDKGIYVTRVSEGGPAE 78
Score = 33.5 bits (76), Expect = 0.23
Identities = 8/41 (19%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETV-RSSGTSALMVIRRR 805
++ D I++VN D + V+ + + + S +++ R+
Sbjct: 83 QIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 123
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1
interacting protein 1, PDZ domain, structural genomics,
KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 96
Score = 64.7 bits (158), Expect = 9e-13
Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 14/106 (13%)
Query: 1121 SHKPHPGELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCG 1180
S EL + I K + G I G V + + GL GD ++E+
Sbjct: 3 SGSSGQAELMTLTIVKGAQGFGFTI-ADSPTGQRVKQILDIQGCP--GLCEGDLIVEINQ 59
Query: 1181 INMRSATYQLAASVLRQC--GNSITMLVQYSPDKYHELEGSGSSSA 1224
N+++ ++ +L+ C G+ ++++ GSG SS
Sbjct: 60 QNVQNLSHTEVVDILKDCPIGSETSLIIH---------RGSGPSSG 96
Score = 54.7 bits (132), Expect = 4e-09
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 1230 SGRGSGEPRFLMIETRKCSN-LGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYN 1288
S SG+ + + K + G ++ G V + GL GD I+E N
Sbjct: 2 SSGSSGQAELMTLTIVKGAQGFGFTIADS-PTGQRVKQILDI--QGCPGLCEGDLIVEIN 58
Query: 1289 GTDLRAATAEEAA 1301
+++ + E
Sbjct: 59 QQNVQNLSHTEVV 71
Score = 32.0 bits (73), Expect = 0.35
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 244
G T+ ++ L GD ++ IN + V LS
Sbjct: 24 GFTIADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQNLS 66
Score = 32.0 bits (73), Expect = 0.35
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 868
G T+ ++ L GD ++ IN + V LS
Sbjct: 24 GFTIADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQNLS 66
Score = 30.4 bits (69), Expect = 1.2
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRS--SGTSALMVIRRRR 806
D IV +N + N+S V++ ++ G+ ++I R
Sbjct: 49 CEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGS 91
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 64.7 bits (158), Expect = 1e-12
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 1121 SHKPHPGELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCG 1180
S H ++ + D ++ G I +S + V V+ A L GDQ+L++
Sbjct: 6 SGVRHTVKIDK---DTLLQDYGFHIS--ESLPLTVVAVTAGGSA-HGKLFPGDQILQMNN 59
Query: 1181 INMRSATYQLAASVLRQCGNSITMLVQ 1207
+++ A +LR+ +S+++ V
Sbjct: 60 EPAEDLSWERAVDILREAEDSLSITVV 86
Score = 52.7 bits (127), Expect = 2e-08
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
L + ++ G A G L GD++L +NN + LS + +L ++ D L+IT +
Sbjct: 30 SLPLTVVAVTAGGSA--HGKLFPGDQILQMNNEPAEDLSWE-RAVDILREAEDSLSITVV 86
Query: 266 KPTSLGEHS 274
+ TS G S
Sbjct: 87 RCTSSGPSS 95
Score = 52.7 bits (127), Expect = 2e-08
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
L + ++ G A G L GD++L +NN + LS + +L ++ D L+IT +
Sbjct: 30 SLPLTVVAVTAGGSA--HGKLFPGDQILQMNNEPAEDLSWE-RAVDILREAEDSLSITVV 86
Query: 890 KPTSLGEHS 898
+ TS G S
Sbjct: 87 RCTSSGPSS 95
Score = 50.8 bits (122), Expect = 8e-08
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 1/84 (1%)
Query: 1231 GRGSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT 1290
GS R + + ++ + V +V +G L GD+IL+ N
Sbjct: 2 SSGSSGVRHTVKIDKDTLLQDYGFHISESLPLTVVAVTAGGSA-HGKLFPGDQILQMNNE 60
Query: 1291 DLRAATAEEAAYELAKPADKVTVL 1314
+ E A L + D +++
Sbjct: 61 PAEDLSWERAVDILREAEDSLSIT 84
Score = 37.0 bits (86), Expect = 0.006
Identities = 9/46 (19%), Positives = 20/46 (43%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARS 811
D I+++NN ++S ++ +R + S + + R S
Sbjct: 49 FPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVRCTSSGPS 94
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural
genomics, alternative splicing, cell cycle, cell
division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 65.5 bits (160), Expect = 1e-12
Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 6/107 (5%)
Query: 1104 SPGLRQNKRNSLPDYCCSHKPHPGELRRVHIDKSVEPLGIQI-----QCLDSGGVFVSTV 1158
+ +L + G+ + + K E LG I S ++V +
Sbjct: 6 HHHHHHHGSENLYFQGSYNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNI 65
Query: 1159 SEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITM 1204
A Q G L+ GD+L+EV G+++ + + S+LR T+
Sbjct: 66 LPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTV 112
Score = 58.9 bits (143), Expect = 2e-10
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 15/125 (12%)
Query: 1209 SPDKYHELEGSGSSSAENESVSGRGSGEPRFLMIETRKCSN-LGISLVGGN-----AVGI 1262
+H + S + + G+ L I+ +K + LG S+ + + I
Sbjct: 3 GSHHHHHHHHGSENLYFQGSYNTKKIGKR--LNIQLKKGTEGLGFSITSRDVTIGGSAPI 60
Query: 1263 YVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYEL--AKPADKVTVLAQYSV 1319
YV ++ G L+ GDR++E NG DL + EE L K V++L V
Sbjct: 61 YVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLL----V 116
Query: 1320 ERYNE 1324
R +
Sbjct: 117 FRQED 121
Score = 49.7 bits (119), Expect = 4e-07
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 263
+ +Y+ I P A ++G L GDR++ +N + G S E ++LL + T++
Sbjct: 57 SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQE-EVVSLLRSTKMEGTVS 113
Score = 49.7 bits (119), Expect = 4e-07
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887
+ +Y+ I P A ++G L GDR++ +N + G S E ++LL + T++
Sbjct: 57 SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQE-EVVSLLRSTKMEGTVS 113
Score = 29.3 bits (66), Expect = 4.2
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALM--VIRRRR 806
K D ++ VN +D S+ V+ +RS+ + ++ R+
Sbjct: 78 KAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQE 120
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 64.8 bits (158), Expect = 1e-12
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 1130 RRVHIDK-SVEPLGIQIQC-LDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSAT 1187
R + K + G ++ D+ G + + E S A + GL GD++L + G+ +
Sbjct: 3 RESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEE 62
Query: 1188 YQLAASVLRQCGNSITMLVQYSPDKYHELEGSG 1220
+ ++R+ GNS+T+LV D Y + +
Sbjct: 63 HAQVVELVRKSGNSVTLLVL-DGDSYEKAVKNQ 94
Score = 56.3 bits (136), Expect = 1e-09
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 1237 PRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAA 1295
PR + ++ N G L + G + ++ GS AGL GDR+L NG +
Sbjct: 2 PRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKE 61
Query: 1296 TAEEAAYELAKPA-DKVT--VLAQYSVERYNEVKDK 1328
+ EL + + + VT VL S E+ + +
Sbjct: 62 EHAQVV-ELVRKSGNSVTLLVLDGDSYEKAVKNQVD 96
Score = 46.3 bits (110), Expect = 4e-06
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 201 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 260
G I I GS A K G L GDRVL IN VD + + L+ S + +
Sbjct: 20 RIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEH-AQVVELVRKSGNSV 77
Query: 261 TITTLKPTSLGEHSPRVHRKSVNSSTQTMPL 291
T+ L S ++ + Q L
Sbjct: 78 TLLVLDGDS--YEKAVKNQVDLKELDQEAKL 106
Score = 46.3 bits (110), Expect = 4e-06
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 825 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 884
G I I GS A K G L GDRVL IN VD + + L+ S + +
Sbjct: 20 RIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEH-AQVVELVRKSGNSV 77
Query: 885 TITTLKPTSLGEHSPRVHRKSVNSSTQTMPL 915
T+ L S ++ + Q L
Sbjct: 78 TLLVLDGDS--YEKAVKNQVDLKELDQEAKL 106
Score = 30.1 bits (68), Expect = 2.0
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRR 805
D ++R+N + V+E VR SG S +++
Sbjct: 45 LDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 84
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 64.2 bits (157), Expect = 1e-12
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 1140 PLGIQIQCLDSGG------VFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAAS 1193
P G ++Q GG + +S++ + A+Q +++GD +L + GIN + T+ A +
Sbjct: 14 PWGFRLQ----GGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQN 69
Query: 1194 VLRQCGNSITMLVQ 1207
++ C S+ M +Q
Sbjct: 70 KIKGCTGSLNMTLQ 83
Score = 54.2 bits (131), Expect = 4e-09
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 261
G L I + G AA+ + +GD VLSI+ G++ E + L
Sbjct: 22 GKDFNMPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHL-EAQNKIKGCTGSLN 79
Query: 262 ITTLKPTSL 270
+T + + L
Sbjct: 80 MTLQRESDL 88
Score = 54.2 bits (131), Expect = 4e-09
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 885
G L I + G AA+ + +GD VLSI+ G++ E + L
Sbjct: 22 GKDFNMPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHL-EAQNKIKGCTGSLN 79
Query: 886 ITTLKPTSL 894
+T + + L
Sbjct: 80 MTLQRESDL 88
Score = 53.8 bits (130), Expect = 5e-09
Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 1248 SNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA 1305
+ G L GG + + + S++ G A +R GD +L +G + + T EA ++
Sbjct: 13 APWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIK 72
Query: 1306 KPADKVTVLAQYSVERYNEV 1325
+ + ++R +++
Sbjct: 73 GCTGSLNMT----LQRESDL 88
Score = 35.7 bits (83), Expect = 0.013
Identities = 4/40 (10%), Positives = 18/40 (45%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRR 805
++ D ++ ++ ++ ++ ++ S M ++R
Sbjct: 46 RIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRE 85
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity
ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A
2h3m_A 2rrm_A
Length = 107
Score = 63.9 bits (156), Expect = 3e-12
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
Query: 1128 ELRRVHIDK-SVEPLGIQI--------QCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEV 1178
E V + + GI I + +S V + A LQ D++ V
Sbjct: 7 EQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEG-QLQENDRVAMV 65
Query: 1179 CGINMRSATYQLAASVLRQCGNSITMLVQY 1208
G++M + + A LR+ G + + ++
Sbjct: 66 NGVSMDNVEHAFAVQQLRKSGKNAKITIRR 95
Score = 51.2 bits (123), Expect = 6e-08
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 13/80 (16%)
Query: 1250 LGISLVGG--------NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAA 1301
GI++ GG I + V G L+ DR+ NG + A
Sbjct: 21 FGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAV 79
Query: 1302 YELAKPADKVTVLAQYSVER 1321
+L K + + R
Sbjct: 80 QQLRKSGKNAKIT----IRR 95
Score = 48.5 bits (116), Expect = 7e-07
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 73 PNEALGLELVGGRDDP-FYPNDSSIYVSNIVKGSVTDGKLK 112
P G+ + GGRD+P F ++SI +S+++KG +G+L+
Sbjct: 17 PGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEGQLQ 57
Score = 47.8 bits (114), Expect = 1e-06
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARSLVTTQL 817
+ ND + VN + NV ++ +R SG +A + IRR++ G TT L
Sbjct: 57 QENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKK-GGGWRRTTYL 107
Score = 47.0 bits (112), Expect = 2e-06
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 199 YDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD 258
H + E+ + I + G A EG L DRV +N ++D + A + L S
Sbjct: 31 NPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMVNGVSMDNVEHA-FAVQQLRKSGK 87
Query: 259 VLTITTLKP 267
IT +
Sbjct: 88 NAKITIRRK 96
Score = 47.0 bits (112), Expect = 2e-06
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 823 YDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD 882
H + E+ + I + G A EG L DRV +N ++D + A + L S
Sbjct: 31 NPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMVNGVSMDNVEHA-FAVQQLRKSGK 87
Query: 883 VLTITTLKP 891
IT +
Sbjct: 88 NAKITIRRK 96
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 63.1 bits (154), Expect = 3e-12
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 1139 EPLGIQIQCLDSGG------VFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAA 1192
P G ++ GG + +S V+ S A+ L +GD + + G N + T+ A
Sbjct: 13 GPWGFRLV----GGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQ 68
Query: 1193 SVLRQCGNSITMLVQYSPDKYH 1214
+ ++ C +++T+ V S +
Sbjct: 69 NRIKGCTDNLTLTVARSEHESD 90
Score = 51.6 bits (124), Expect = 4e-08
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 811 SLVTTQLQLNNSYDHGLTLESG------LYICKISPGSLAAKEGSLAVGDRVLSINNRTV 864
S+ T Q+ L G L G L I +++PGS AA L +GD + +I+
Sbjct: 1 SMTTQQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALAN-LCIGDVITAIDGENT 59
Query: 865 DGLSSAREGMALLSDSPDVLTIT 887
++ E + D LT+T
Sbjct: 60 SNMTHL-EAQNRIKGCTDNLTLT 81
Score = 50.8 bits (122), Expect = 6e-08
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 1250 LGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEA 1300
G LVGG + + V GS A L GD I +G + T EA
Sbjct: 15 WGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEA 67
Score = 49.7 bits (119), Expect = 2e-07
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 261
G E L I +++PGS AA L +GD + +I+ ++ E + D LT
Sbjct: 22 GKDFEQPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHL-EAQNRIKGCTDNLT 79
Query: 262 IT 263
+T
Sbjct: 80 LT 81
Score = 33.9 bits (78), Expect = 0.070
Identities = 5/40 (12%), Positives = 16/40 (40%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRR 805
+ D I ++ + SN++ ++ + + + R
Sbjct: 46 CIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARS 85
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 63.2 bits (154), Expect = 3e-12
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 12/90 (13%)
Query: 1129 LRRVHIDKSVEP-LGIQI----------QCLDSGGVFVSTVSEHSLASQVGLQVGDQLLE 1177
+ + +P LG I D G+FV+ V AS++ LQ GD++++
Sbjct: 2 SMEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQ 60
Query: 1178 VCGINMRSATYQLAASVLRQCGNSITMLVQ 1207
G + + + A S+L+ N++ +++
Sbjct: 61 ANGYSFINIEHGQAVSLLKTFQNTVELIIV 90
Score = 51.6 bits (124), Expect = 3e-08
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 1242 IETRKCSNLGISLVGG----------NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTD 1291
+ K LG S+ GG + GI+V VQ L+ GD+I++ NG
Sbjct: 7 VRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYS 65
Query: 1292 LRAATAEEAAYELAKPADKVTVL 1314
+A L + V ++
Sbjct: 66 FINIEHGQAVSLLKTFQNTVELI 88
Score = 45.9 bits (109), Expect = 5e-06
Identities = 10/64 (15%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
+ G+++ ++ P A L GD+++ N + + + ++LL + + + +
Sbjct: 34 DDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHG-QAVSLLKTFQNTVELIIV 90
Query: 266 KPTS 269
+ S
Sbjct: 91 REVS 94
Score = 45.9 bits (109), Expect = 5e-06
Identities = 10/64 (15%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
+ G+++ ++ P A L GD+++ N + + + ++LL + + + +
Sbjct: 34 DDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHG-QAVSLLKTFQNTVELIIV 90
Query: 890 KPTS 893
+ S
Sbjct: 91 REVS 94
Score = 42.8 bits (101), Expect = 4e-05
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 70 NLSPNEALGLELVGGRD---DPFYPNDSSIYVSNIVKGSVTDGKLK 112
+ + LG + GG +PF P+D I+V+ + L+
Sbjct: 8 RVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQ 53
Score = 35.1 bits (81), Expect = 0.023
Identities = 6/40 (15%), Positives = 17/40 (42%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRR 805
+ D I++ N N+ + +++ + ++I R
Sbjct: 53 QPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 92
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 63.7 bits (155), Expect = 3e-12
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 3/105 (2%)
Query: 1121 SHKPHPGELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCG 1180
S R +H LG ++ + V V + H AS G + GD ++ + G
Sbjct: 8 SASKRWSPPRGIHFTVEEGDLGFTLRG--NTPVQVHFLDPHCSASLAGAKEGDYIVSIQG 65
Query: 1181 INMRSATYQLAASVLRQCG-NSITMLVQYSPDKYHELEGSGSSSA 1224
++ + T +L+ G + M V D + S+
Sbjct: 66 VDCKWLTVSEVMKLLKSFGGEEVEMKVVSLLDSTSSMHNKSGPSS 110
Score = 52.5 bits (126), Expect = 3e-08
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 1218 GSGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG 1277
GS SS PR + T + +LG +L G + VH + AG
Sbjct: 1 GSSGSSGSASKRWS----PPRGIHF-TVEEGDLGFTLRGNT--PVQVHFLDPHCSASLAG 53
Query: 1278 LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 1314
+ GD I+ G D + T E L + +
Sbjct: 54 AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEM 90
Score = 45.9 bits (109), Expect = 5e-06
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 202 GLTL--ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 259
G TL + + + + P A+ G GD ++SI L+ + E M LL
Sbjct: 29 GFTLRGNTPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVS-EVMKLLKSFGGE 86
Query: 260 LTITTLKPTSLGEHSPRVHRKSVNSS 285
+K SL + + +H KS SS
Sbjct: 87 --EVEMKVVSLLDSTSSMHNKSGPSS 110
Score = 45.9 bits (109), Expect = 5e-06
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 826 GLTL--ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 883
G TL + + + + P A+ G GD ++SI L+ + E M LL
Sbjct: 29 GFTLRGNTPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVS-EVMKLLKSFGGE 86
Query: 884 LTITTLKPTSLGEHSPRVHRKSVNSS 909
+K SL + + +H KS SS
Sbjct: 87 --EVEMKVVSLLDSTSSMHNKSGPSS 110
Score = 30.9 bits (70), Expect = 1.1
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSAL 799
K D IV + +DC ++ V++ ++S G +
Sbjct: 55 KEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEV 88
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 67.8 bits (165), Expect = 3e-12
Identities = 39/168 (23%), Positives = 61/168 (36%), Gaps = 8/168 (4%)
Query: 1173 DQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPD-----KYHELEGSGSSSAENE 1227
LLE+ A + VL + + + +L G+ A
Sbjct: 9 TGLLELRCGAGSGAGGERWQRVLLSLAEDALTVSPADGEPGPEPEPAQLNGAAEPGAAPP 68
Query: 1228 SVSGRGSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRI 1284
+ + R + + LGIS+ GG N + I + + G L GD I
Sbjct: 69 QLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAI 128
Query: 1285 LEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKPGDS 1332
L NG DL +AT +EA L K +V + +Y E K+ G +
Sbjct: 129 LSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGT 176
Score = 65.9 bits (160), Expect = 1e-11
Identities = 37/184 (20%), Positives = 67/184 (36%), Gaps = 20/184 (10%)
Query: 1088 TSERGSPMPTFHVEVLSPGLRQNKRNSLPDYCCSHKPH--PGELRRVHIDKS-VEPLGIQ 1144
+ G P P P Q + P P + RRV + K+ LGI
Sbjct: 42 SPADGEPGP-------EPEPAQLNGAAEPGAAPPQLPEALLLQRRRVTVRKADAGGLGIS 94
Query: 1145 IQ--CLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSATYQLAASVLRQCGNS 1201
I+ + + +S + + A Q L VGD +L V G ++ SAT+ A L++ G
Sbjct: 95 IKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKE 154
Query: 1202 ITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGEPRFLM-------IETRKCSNLGISL 1254
+ + V+Y + + S ++ + + + K +L ++
Sbjct: 155 VVLEVKYMKEVSPYFKNSAGGTSVGWDSPPASPLQRQPSSPGPQPRNLSEAKHVSLKMAY 214
Query: 1255 VGGN 1258
V
Sbjct: 215 VSRR 218
Score = 50.9 bits (121), Expect = 1e-06
Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 5/125 (4%)
Query: 832 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 891
+ I KI G A + +L VGD +LS+N + + E + L + + +
Sbjct: 104 PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHD-EAVQALKKTGKEVVLEVKYM 162
Query: 892 TSLGEHSPRVHRKSVNSSTQTMPLYVRYGDQPPPDSYQVPKTSTK-SHDPAKPSPSSSGG 950
E SP + +S + P P+ ++ H K + S
Sbjct: 163 K---EVSPYFKNSAGGTSVGWDSPPASPLQRQPSSPGPQPRNLSEAKHVSLKMAYVSRRC 219
Query: 951 GGKWD 955
Sbjct: 220 TPTDP 224
Score = 45.5 bits (107), Expect = 6e-05
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 208 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKP 267
+ I KI G A + +L VGD +LS+N + + E + L + + +
Sbjct: 104 PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHD-EAVQALKKTGKEVVLEVKYM 162
Query: 268 TSLGEHSPRVHRKSVNSSTQTMPLYVRQH 296
+ + + +++
Sbjct: 163 KEVSPYFKNSAGGTSVGWDSPPASPLQRQ 191
Score = 30.1 bits (67), Expect = 5.3
Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 12/111 (10%)
Query: 4 PPEPRQQPSENREDQNHVVVPIHKTQVEKESRMLQLHSVSHNYSHDSAIDTDLQEWDTEV 63
E Q+ + + V P + + + + L +
Sbjct: 23 GGERWQRVLLSLAEDALTVSPADGEPGPEPEPAQLNGAAEPGAAPPQLPEALLLQRRRVT 82
Query: 64 LDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
+ + LG+ + GGR+ N I +S I KG L
Sbjct: 83 V-----RKADAGGLGISIKGGRE-----NKMPILISKIFKGLAADQTEALF 123
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1
interacting protein 1, PDZ domain, structural genomics;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 63.6 bits (155), Expect = 3e-12
Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 14/110 (12%)
Query: 1126 PGELRRVHIDK-SVEPLGIQIQ---------CLDSGGVFVSTVSEHSLASQVG-LQVGDQ 1174
+ V I + E G I + + + + S A + L+VGD+
Sbjct: 8 SLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDR 67
Query: 1175 LLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSA 1224
+L V G ++ + + +++ G S+T+ + + SG SS
Sbjct: 68 ILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEELN---SPSGPSSG 114
Score = 58.6 bits (142), Expect = 2e-10
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 197 NSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDS 256
N + G T+ I +I GS A + L VGDR+L++N +++ + A + + L+ D+
Sbjct: 33 NRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHA-DIVKLIKDA 91
Query: 257 PDVLTITTLKPTSLGEHSP 275
+T+ + L S
Sbjct: 92 GLSVTLRIIPQEELNSPSG 110
Score = 58.6 bits (142), Expect = 2e-10
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 821 NSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDS 880
N + G T+ I +I GS A + L VGDR+L++N +++ + A + + L+ D+
Sbjct: 33 NRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHA-DIVKLIKDA 91
Query: 881 PDVLTITTLKPTSLGEHSP 899
+T+ + L S
Sbjct: 92 GLSVTLRIIPQEELNSPSG 110
Score = 57.4 bits (139), Expect = 5e-10
Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 16/115 (13%)
Query: 1230 SGRGSGEPRFLMIETRKCSN--LGISLVGG---------NAVGIYVHSVQSGSLGYSAG- 1277
S SG + + + N G ++ V + + GS
Sbjct: 2 SSGSSGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAK 61
Query: 1278 LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKPGDS 1332
L+ GDRIL NG + + + VT+ + E+ G S
Sbjct: 62 LKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLR----IIPQEELNSPSGPS 112
Score = 37.0 bits (86), Expect = 0.007
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 72 SPNEALGLELVGGRDDPFYPNDSS--IYVSNIVKGSV--TDGKLK 112
NE G ++ + P + + + I+ GS KLK
Sbjct: 19 KENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLK 63
Score = 34.0 bits (78), Expect = 0.081
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
KV D I+ VN N+ +++ ++ +G S + I +
Sbjct: 63 KVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQE 103
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 63.2 bits (154), Expect = 4e-12
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 13/97 (13%)
Query: 1121 SHKPHPGELRRVHIDKSVEPLGIQIQ---------CLDSGGVFVSTVSEHSLASQVGLQV 1171
S + L + + G +IQ FV+ V E S A GL
Sbjct: 2 SQQRKVLTLEK----GDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTP 57
Query: 1172 GDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQY 1208
GD + V G+N+ ++ +++ GN + + Y
Sbjct: 58 GDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94
Score = 55.9 bits (135), Expect = 1e-09
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 9/91 (9%)
Query: 1233 GSGEPRFLMIETRKCSNLGISLVGG---------NAVGIYVHSVQSGSLGYSAGLRTGDR 1283
GS + + L +E G + + +V V S AGL GD
Sbjct: 1 GSQQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDT 60
Query: 1284 ILEYNGTDLRAATAEEAAYELAKPADKVTVL 1314
I NG ++ E + + + +
Sbjct: 61 IASVNGLNVEGIRHREIVDIIKASGNVLRLE 91
Score = 47.8 bits (114), Expect = 8e-07
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
E ++ ++ S A G L GD + S+N V+G+ RE + ++ S +VL + TL
Sbjct: 36 EMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGI-RHREIVDIIKASGNVLRLETL 93
Query: 266 KPT 268
T
Sbjct: 94 YGT 96
Score = 47.8 bits (114), Expect = 8e-07
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
E ++ ++ S A G L GD + S+N V+G+ RE + ++ S +VL + TL
Sbjct: 36 EMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGI-RHREIVDIIKASGNVLRLETL 93
Query: 890 KPT 892
T
Sbjct: 94 YGT 96
Score = 30.4 bits (69), Expect = 1.1
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRR 804
D I VN L+ + R +++ +++SG +
Sbjct: 56 TPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1
interacting protein 1, PDZ domain, structural genomics;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 64.0 bits (156), Expect = 4e-12
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 9/125 (7%)
Query: 1112 RNSLPDYCCSHKPHPGELRRVHIDKSVEPLGIQIQCLD--SGGVFVSTVSEHSLASQVG- 1168
S + G + KS G I D + V +V A+Q G
Sbjct: 3 SGSSGLFTRDASQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGK 62
Query: 1169 LQVGDQLLEVCGINMRSATYQLAASVLRQC--GNSITMLVQYSPDKYHELEGSGSSSAEN 1226
++ GD ++ + + + T+ + + G S+ +++ + + L A +
Sbjct: 63 METGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLC----RGYPLPFDPEDPANS 118
Query: 1227 ESVSG 1231
SG
Sbjct: 119 GPSSG 123
Score = 61.3 bits (149), Expect = 3e-11
Identities = 25/121 (20%), Positives = 41/121 (33%), Gaps = 12/121 (9%)
Query: 1218 GSGSSSAENESVSGRGSGEPRFLMIETRKCSN-LGISLVGG--NAVGIYVHSVQSGSLGY 1274
GS SS + + G FL +K + G +++GG + V SV
Sbjct: 1 GSSGSSGLFTRDASQLKGT--FLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAA 58
Query: 1275 SAG-LRTGDRILEYNGTDLRAATAEEAAYEL--AKPADKVTVLAQYSVERYNEVKDKPGD 1331
G + TGD I+ N + T + V ++ + R + P D
Sbjct: 59 QDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLV----LCRGYPLPFDPED 114
Query: 1332 S 1332
Sbjct: 115 P 115
Score = 49.3 bits (118), Expect = 5e-07
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 244
+ L + + P AA++G + GD ++ IN V G +
Sbjct: 43 DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHT 81
Score = 49.3 bits (118), Expect = 5e-07
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 868
+ L + + P AA++G + GD ++ IN V G +
Sbjct: 43 DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHT 81
Score = 33.2 bits (76), Expect = 0.19
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
N G ++GG + D + V +++ DGK++
Sbjct: 29 NMGFGFTIIGGDE-----PDEFLQVKSVIPDGPAAQDGKME 64
Score = 31.2 bits (71), Expect = 0.79
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRS--SGTSALMVIRRRR 806
+ D IV +N + + V++ +S G S +V+ R
Sbjct: 64 ETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGY 106
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 63.6 bits (155), Expect = 4e-12
Identities = 22/106 (20%), Positives = 34/106 (32%), Gaps = 10/106 (9%)
Query: 1126 PGELRRVHIDK-SVEPLGIQI--------QCLDSGGVFVSTVSEHSLASQVGLQVGDQLL 1176
E V + K S GI + + +S V A LQ D+++
Sbjct: 12 IWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPADG-LLQENDRVV 70
Query: 1177 EVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSS 1222
V G M + A LR+ G ++V+ SS
Sbjct: 71 MVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKVQVAPLSGPSS 116
Score = 56.7 bits (137), Expect = 1e-09
Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 14/121 (11%)
Query: 1218 GSGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG--------NAVGIYVHSVQS 1269
GS SS E + E + ++ GI++ GG I + V
Sbjct: 1 GSSGSSGMEEVI-----WEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLP 55
Query: 1270 GSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKP 1329
G L+ DR++ NGT + A +L K ++ + + P
Sbjct: 56 GGPA-DGLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKVQVAPLSGP 114
Query: 1330 G 1330
Sbjct: 115 S 115
Score = 47.8 bits (114), Expect = 1e-06
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 73 PNEALGLELVGGRDDP-FYPNDSSIYVSNIVKGSVTDGKLK 112
G+ + GGRD+P F ++SI +S+++ G DG L+
Sbjct: 24 SKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQ 64
Score = 47.0 bits (112), Expect = 3e-06
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 200 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 259
H E+ + I + PG A +G L DRV+ +N ++ + + + L S +
Sbjct: 39 PHFENGETSIVISDVLPGGPA--DGLLQENDRVVMVNGTPMEDVLHS-FAVQQLRKSGKI 95
Query: 260 LTITTLKPTSL 270
I +P +
Sbjct: 96 AAIVVKRPRKV 106
Score = 47.0 bits (112), Expect = 3e-06
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 824 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 883
H E+ + I + PG A +G L DRV+ +N ++ + + + L S +
Sbjct: 39 PHFENGETSIVISDVLPGGPA--DGLLQENDRVVMVNGTPMEDVLHS-FAVQQLRKSGKI 95
Query: 884 LTITTLKPTSL 894
I +P +
Sbjct: 96 AAIVVKRPRKV 106
Score = 44.0 bits (104), Expect = 3e-05
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+ ND +V VN +V ++ +R SG A +V++R R
Sbjct: 64 QENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPR 104
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1
interacting protein 1, PDZ domain, structural genomics;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 63.1 bits (154), Expect = 4e-12
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 13/96 (13%)
Query: 1121 SHKPHPGELRRVHIDKSVEPLGIQIQCLDSGG------VFVSTVSEHSLASQVG-LQVGD 1173
S + VH+ + G +I GG + + V A + G L GD
Sbjct: 2 SSGSSGYKELDVHLRRMESGFGFRI----LGGDEPGQPILIGAVIAMGSADRDGRLHPGD 57
Query: 1174 QLLEVCGINMRSATYQLAASVLRQCGNS--ITMLVQ 1207
+L+ V GI + T++ ++ + + + V+
Sbjct: 58 ELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVR 93
Score = 56.9 bits (138), Expect = 7e-10
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 1231 GRGSGEPRFLMIETRKCSN-LGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILE 1286
GS + L + R+ + G ++GG I + +V + G L GD ++
Sbjct: 2 SSGSSGYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVY 61
Query: 1287 YNGTDLRAATAEEAAYELAKPADKVTV 1313
+G + T + A V
Sbjct: 62 VDGIPVAGKTHRYVIDLMHHAARNGQV 88
Score = 50.0 bits (120), Expect = 2e-07
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 263
+ I + A ++G L GD ++ ++ V G + + L+ + +
Sbjct: 34 QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHR-YVIDLMHHAARNGQVN 89
Score = 50.0 bits (120), Expect = 2e-07
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887
+ I + A ++G L GD ++ ++ V G + + L+ + +
Sbjct: 34 QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHR-YVIDLMHHAARNGQVN 89
Score = 31.9 bits (73), Expect = 0.43
Identities = 8/48 (16%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSAL--MVIRRRRVGARS 811
D +V V+ + + + R V++ + + + + +RR+ + S
Sbjct: 54 HPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVLSGPS 101
Score = 31.5 bits (72), Expect = 0.60
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 7/41 (17%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
G ++GG + I + ++ DG+L
Sbjct: 19 ESGFGFRILGGDEP-----GQPILIGAVIAMGSADRDGRLH 54
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 62.4 bits (152), Expect = 7e-12
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Query: 1128 ELRRVHIDKSVEPLGIQI---QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINM 1183
V + KS LGI I + T+ A G L+VG +LEV G+ +
Sbjct: 6 SGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTL 65
Query: 1184 RSATYQLAASVLRQCGNSITM-LVQYSPDKYHELEGSG 1220
R ++ AA ++ + + + + +++ SG
Sbjct: 66 RGKEHREAARIIAEAFKTKDRDYIDFLVTEFNSGPSSG 103
Score = 59.4 bits (144), Expect = 8e-11
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 1233 GSGEPRFLMIETRKCSN-LGISLVGG---NAVGIYVHSVQSGSLGYSAG-LRTGDRILEY 1287
GS ++ +K + LGI++ GG + ++Q G ++ G L+ G ILE
Sbjct: 1 GSSGSSGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEV 60
Query: 1288 NGTDLRAATAEEAAYELAKPADKVT 1312
NG LR EAA +A+
Sbjct: 61 NGLTLRGKEHREAARIIAEAFKTKD 85
Score = 46.6 bits (111), Expect = 3e-06
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 208 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 244
I I G A G L VG +L +N T+ G
Sbjct: 33 LPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKE 69
Score = 46.6 bits (111), Expect = 3e-06
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 832 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 868
I I G A G L VG +L +N T+ G
Sbjct: 33 LPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKE 69
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 62.1 bits (151), Expect = 1e-11
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 1126 PGELRRVHIDKS-VEPLGIQIQ---------CLDSGGVFVSTVSEHSLASQVGLQVGDQL 1175
+ + V ++K E G +IQ C + + E S A GLQ GD L
Sbjct: 13 WSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVL 72
Query: 1176 LEVCGINMRSATYQLAASVLRQCGNSITMLV 1206
+ G++ TY+ ++R GN +T+
Sbjct: 73 ANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103
Score = 56.7 bits (137), Expect = 9e-10
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 14/105 (13%)
Query: 1219 SGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG---------NAVGIYVHSVQS 1269
SGSS + S S + + +E + G + + + + +Q
Sbjct: 3 SGSSGLSDFSWSQ-----RKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQE 57
Query: 1270 GSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 1314
S + AGL+ GD + NG T ++ + + +T+
Sbjct: 58 DSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIE 102
Score = 47.1 bits (112), Expect = 2e-06
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
E ICKI S A G L GD + +IN + +G + + + L+ S ++LTI TL
Sbjct: 47 EMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYK-QVVDLIRSSGNLLTIETL 104
Score = 47.1 bits (112), Expect = 2e-06
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
E ICKI S A G L GD + +IN + +G + + + L+ S ++LTI TL
Sbjct: 47 EMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYK-QVVDLIRSSGNLLTIETL 104
Score = 30.1 bits (68), Expect = 1.9
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVI 802
+ D + +N + + + V++ +RSSG +
Sbjct: 67 QAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 61.1 bits (149), Expect = 1e-11
Identities = 14/86 (16%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 1130 RRVHIDKSVEPLGIQIQ--CLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSA 1186
+ + + + G +I +++ + A G L+ GD+L+ V G +
Sbjct: 4 QDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGK 63
Query: 1187 TYQLAASVLRQCGN--SITMLVQYSP 1210
++QL +++Q + + V+ +
Sbjct: 64 SHQLVVQLMQQAAKQGHVNLTVRQTR 89
Score = 54.2 bits (131), Expect = 4e-09
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 1242 IETRKCSN-LGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATA 1297
I + G ++GG IY+ + + G LR+GD ++ +GT + +
Sbjct: 6 IFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSH 65
Query: 1298 EEAAYELAKPADKVTV 1313
+ + + A + V
Sbjct: 66 QLVVQLMQQAAKQGHV 81
Score = 51.9 bits (125), Expect = 3e-08
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 263
+YI I P A +G L GD ++S++ V G S + L+ + +
Sbjct: 27 EPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQ-LVVQLMQQAAKQGHVN 82
Score = 51.9 bits (125), Expect = 3e-08
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887
+YI I P A +G L GD ++S++ V G S + L+ + +
Sbjct: 27 EPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQ-LVVQLMQQAAKQGHVN 82
Score = 33.0 bits (76), Expect = 0.14
Identities = 6/44 (13%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSAL--MVIRRRRV 807
+ D ++ V+ S ++V++ ++ + + +R+ R+
Sbjct: 47 RSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQTRL 90
Score = 32.6 bits (75), Expect = 0.18
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 74 NEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
G ++GG + IY+ +IV TDG+L+
Sbjct: 12 ETGFGFRILGGNE-----PGEPIYIGHIVPLGAADTDGRLR 47
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 61.3 bits (149), Expect = 2e-11
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 1129 LRRVHIDKS-VEPLGIQIQCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSA 1186
R V I K+ E LG+ + ++ G + ++ + + +Q G L VGD + EV G + S
Sbjct: 7 GRMVGIRKTAGEHLGVTFR-VEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSD 65
Query: 1187 TYQLAASVLRQCGNSITMLVQYSP 1210
+LR S+ + + P
Sbjct: 66 PRA-LQELLRNASGSVILKILSGP 88
Score = 47.4 bits (113), Expect = 1e-06
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 5/85 (5%)
Query: 1233 GSGEPRFLMIETRKCSN--LGISLVGGNAVGIYVHSVQSGSLGY-SAGLRTGDRILEYNG 1289
GS M+ RK + LG++ + + + G + L GD I E NG
Sbjct: 1 GSSGSSGRMVGIRKTAGEHLGVTFRVEGG-ELVIARILHGGMVAQQGLLHVGDIIKEVNG 59
Query: 1290 TDLRAATAEEAAYELAKPADKVTVL 1314
+ + L + V +
Sbjct: 60 QPVG-SDPRALQELLRNASGSVILK 83
Score = 42.8 bits (101), Expect = 5e-05
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 202 GLTL---ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD 258
G+T L I +I G + A++G L VGD + +N + V S R LL ++
Sbjct: 21 GVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVG--SDPRALQELLRNASG 78
Query: 259 VLTITTLKPTSLG 271
+ + L S G
Sbjct: 79 SVILKILSGPSSG 91
Score = 42.8 bits (101), Expect = 5e-05
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 826 GLTL---ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD 882
G+T L I +I G + A++G L VGD + +N + V S R LL ++
Sbjct: 21 GVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVG--SDPRALQELLRNASG 78
Query: 883 VLTITTLKPTSLG 895
+ + L S G
Sbjct: 79 SVILKILSGPSSG 91
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics,
structural genomics consortium, SGC; 2.70A {Homo sapiens}
Length = 117
Score = 62.0 bits (151), Expect = 2e-11
Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 1121 SHKPHPGELRRVHIDK-SVEPLGIQI-----QCLDSGGVFVSTVSEHSLASQVG-LQVGD 1173
+ + + K LG + + G+FV + E S+A + G L+ D
Sbjct: 13 KNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETD 72
Query: 1174 QLLEVCGINM-RSATYQLAASVLRQCGNSITMLVQ 1207
Q+L + G + ++ T+Q A S+L++ +++ +++
Sbjct: 73 QILAINGQALDQTITHQQAISILQKAKDTVQLVIA 107
Score = 60.5 bits (147), Expect = 6e-11
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 1219 SGSSSAENESVSGRGSGEPRFLMIETRKCSN--LGISLVGG-----NAVGIYVHSVQSGS 1271
S + E + + + + E K + LG S+VG +GI+V +Q GS
Sbjct: 1 SMPACDEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGS 60
Query: 1272 LGYSAG-LRTGDRILEYNGTDL-RAATAEEAAYELAKPADKVT-VLAQYSVERYNEV 1325
+ + G L+ D+IL NG L + T ++A L K D V V+A+ S+ +Y +V
Sbjct: 61 VAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARGSLPQYYKV 117
Score = 52.0 bits (125), Expect = 4e-08
Identities = 15/63 (23%), Positives = 38/63 (60%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
E G+++ +I GS+A ++G L D++L+IN + +D + ++ +++L + D + +
Sbjct: 48 ELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIA 107
Query: 266 KPT 268
+ +
Sbjct: 108 RGS 110
Score = 52.0 bits (125), Expect = 4e-08
Identities = 15/63 (23%), Positives = 38/63 (60%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
E G+++ +I GS+A ++G L D++L+IN + +D + ++ +++L + D + +
Sbjct: 48 ELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIA 107
Query: 890 KPT 892
+ +
Sbjct: 108 RGS 110
Score = 38.1 bits (89), Expect = 0.004
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 73 PNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
P+ LG +VG R + + I+V I +GSV DG+LK
Sbjct: 30 PSGGLGFSVVGLRSEN--RGELGIFVQEIQEGSVAHRDGRLK 69
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural
genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 60.9 bits (148), Expect = 2e-11
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 1240 LMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEE 1299
+ K + G ++ GI+V SV++GS + L+ D I+ N T ++E
Sbjct: 9 INQTPGKSLDFGFTIKWDIP-GIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKE 67
Query: 1300 AAYELAKPADKVTVLAQYSVERY 1322
+AK + ++ V RY
Sbjct: 68 WEEAMAKAQETGHLVMD--VRRY 88
Score = 59.7 bits (145), Expect = 4e-11
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 1130 RRVHIDK---SVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSA 1186
R+ I++ G I+ D G+FV++V S A LQV D+++ +
Sbjct: 5 MRISINQTPGKSLDFGFTIKW-DIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYN 63
Query: 1187 TYQLAASVLRQCGNSITMLVQ 1207
+ + + + +++
Sbjct: 64 DSKEWEEAMAKAQETGHLVMD 84
Score = 49.3 bits (118), Expect = 2e-07
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 813 VTTQLQLNNSYDHGLTL---ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSS 869
++ S D G T+ G+++ + GS A L V D +++INN S
Sbjct: 7 ISINQTPGKSLDFGFTIKWDIPGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDS 65
Query: 870 AREGMALLSDSPDVLTIT 887
E ++ + + +
Sbjct: 66 K-EWEEAMAKAQETGHLV 82
Score = 47.8 bits (114), Expect = 8e-07
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 196 NNSYDHGLTL---ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMAL 252
S D G T+ G+++ + GS A L V D +++INN S E
Sbjct: 14 GKSLDFGFTIKWDIPGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSK-EWEEA 71
Query: 253 LSDSPDVLTIT 263
++ + + +
Sbjct: 72 MAKAQETGHLV 82
Score = 37.4 bits (87), Expect = 0.003
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVG 808
+V+D I+ +NN S + E + + + +V+ RR G
Sbjct: 47 QVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYG 89
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 61.3 bits (149), Expect = 2e-11
Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 1130 RRVHIDK-SVEPLGIQIQCLDSGG------VFVSTVSEHSLASQVG-LQVGDQLLEVCGI 1181
+V + K + +GI I GG +++ V +++ A+ G + GD++ V G
Sbjct: 26 GKVTLQKDAQNLIGISI----GGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGR 81
Query: 1182 NMRSATYQLAASVLRQCGNSITMLVQY 1208
+++ T A ++++ +T+
Sbjct: 82 SIKGKTKVEVAKMIQEVKGEVTIHYNK 108
Score = 60.9 bits (148), Expect = 3e-11
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 1234 SGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGT 1290
S P + ++ + +GIS+ GG +Y+ V + G + GD I NG
Sbjct: 22 SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGR 81
Query: 1291 DLRAATAEEAAYELAKPADKVTV 1313
++ T E A + + +VT+
Sbjct: 82 SIKGKTKVEVAKMIQEVKGEVTI 104
Score = 52.1 bits (125), Expect = 5e-08
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 261
G LYI ++ + AA +G++A GD + +N R++ G + E ++ + +T
Sbjct: 45 GAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKV-EVAKMIQEVKGEVT 103
Query: 262 IT 263
I
Sbjct: 104 IH 105
Score = 52.1 bits (125), Expect = 5e-08
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 885
G LYI ++ + AA +G++A GD + +N R++ G + E ++ + +T
Sbjct: 45 GAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKV-EVAKMIQEVKGEVT 103
Query: 886 IT 887
I
Sbjct: 104 IH 105
Score = 35.1 bits (81), Expect = 0.034
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 9/75 (12%)
Query: 42 VSHNYSHDSAIDTDLQEWDTEVLDMNLTNL--SPNEALGLELVGGRDDPFYPNDSSIYVS 99
+ H++ H S +D + + + L +G+ + GG +Y+
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMVPGKVTLQKDAQNLIGISIGGGAQ-----YCPCLYIV 55
Query: 100 NIVKGSV--TDGKLK 112
+ + DG +
Sbjct: 56 QVFDNTPAALDGTVA 70
Score = 29.0 bits (65), Expect = 5.4
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
D I VN +K V + ++ + + +
Sbjct: 70 AAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 110
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 61.7 bits (150), Expect = 2e-11
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 1219 SGSSSAENESVSGRGSGEPRFLMIETRKCSN--LGISLVGG-----NAVGIYVHSVQSGS 1271
+ S + + + GR R + S LG+ +VGG + ++ V+ GS
Sbjct: 17 TWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGS 76
Query: 1272 LGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 1313
L + G LR GD +LE+NG L+ AT EE + + + V
Sbjct: 77 LADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQV 119
Score = 57.5 bits (139), Expect = 9e-10
Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 1124 PHPGELRRVHIDKSVEPLGIQI-----QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLE 1177
+ S LG+++ F++ V + SLA VG L+ GD++LE
Sbjct: 33 LNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLE 92
Query: 1178 VCGINMRSATYQLAASVLRQCGNSITM 1204
G ++ AT++ +++ + +
Sbjct: 93 WNGRLLQGATFEEVYNIILESKPEPQV 119
Score = 49.8 bits (119), Expect = 4e-07
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 263
+I K+ GSLA G L GD VL N R + G + E ++ +S +
Sbjct: 64 RLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATF-EEVYNIILESKPEPQVE 120
Score = 49.8 bits (119), Expect = 4e-07
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887
+I K+ GSLA G L GD VL N R + G + E ++ +S +
Sbjct: 64 RLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATF-EEVYNIILESKPEPQVE 120
Score = 35.5 bits (82), Expect = 0.036
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 72 SPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLKK 113
LGL++VGG+ +++ + KGS+ T G L+
Sbjct: 45 DSGAMLGLKVVGGKMTE--SGRLCAFITKVKKGSLADTVGHLRP 86
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 60.9 bits (148), Expect = 3e-11
Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 1130 RRVHIDKSVEPLGIQIQ---------CLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCG 1180
+ I S + G ++ + + V +V + S A + GL+ GD + + G
Sbjct: 4 PPIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHING 63
Query: 1181 INMRSATYQLAASVLRQCGNSITMLVQ 1207
++ + +L + GN I++
Sbjct: 64 ESVLGLVHMDVVELLLKSGNKISLRTT 90
Score = 47.0 bits (112), Expect = 2e-06
Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 9/87 (10%)
Query: 1237 PRFLMIETRKCSNLGISLVGG---------NAVGIYVHSVQSGSLGYSAGLRTGDRILEY 1287
R ++ G SL V V SV+ GS AGLR GD I
Sbjct: 2 MRPPIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHI 61
Query: 1288 NGTDLRAATAEEAAYELAKPADKVTVL 1314
NG + + L K +K+++
Sbjct: 62 NGESVLGLVHMDVVELLLKSGNKISLR 88
Score = 43.5 bits (103), Expect = 3e-05
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
+ + GS A + G L GD + IN +V GL + + LL S + +++ T
Sbjct: 33 TVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHM-DVVELLLKSGNKISLRTT 90
Score = 43.5 bits (103), Expect = 3e-05
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
+ + GS A + G L GD + IN +V GL + + LL S + +++ T
Sbjct: 33 TVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHM-DVVELLLKSGNKISLRTT 90
Score = 28.5 bits (64), Expect = 5.2
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRR 805
+ D I +N + V+E + SG +
Sbjct: 53 RAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTAL 92
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ
domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 61.7 bits (150), Expect = 3e-11
Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 7/121 (5%)
Query: 1219 SGSSSAENESVSGRGSGEPRFLMIETRKCSN-LGISLVGG-----NAVGIYVHSVQSGSL 1272
S +S++ VS + E + K S LG SL GG + ++ + G+
Sbjct: 10 SAASASAASDVSVESTAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAA 69
Query: 1273 GYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKPGD 1331
+ ++ GD IL+ GT ++ T EA + D + ++ GD
Sbjct: 70 SEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSKETTAAGD 129
Query: 1332 S 1332
S
Sbjct: 130 S 130
Score = 61.0 bits (148), Expect = 5e-11
Identities = 15/106 (14%), Positives = 40/106 (37%), Gaps = 6/106 (5%)
Query: 1124 PHPGELRRVHIDKSVEPLGIQI-----QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLE 1177
+ V ++K LG + + ++ + + + + Q +Q GD++L+
Sbjct: 25 TAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQ 84
Query: 1178 VCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSS 1223
+ G M+ T A ++++ + +V + + S
Sbjct: 85 LGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSKETTAAGDS 130
Score = 47.9 bits (114), Expect = 2e-06
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 244
+ L I +I G+ + + ++ GD +L + + GL+
Sbjct: 56 DKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLT 94
Score = 47.9 bits (114), Expect = 2e-06
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 868
+ L I +I G+ + + ++ GD +L + + GL+
Sbjct: 56 DKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLT 94
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell membrane;
NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 61.0 bits (148), Expect = 4e-11
Identities = 17/128 (13%), Positives = 42/128 (32%), Gaps = 10/128 (7%)
Query: 1116 PDYCCSHKPHPGELRRVHIDKSVEPLGIQIQCLDSG--GVFVSTVSEHSLASQVG-LQVG 1172
P + + G+ + KS G + D + + ++ A+ G ++ G
Sbjct: 6 PFFTRNPSELKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETG 65
Query: 1173 DQLLEVCGINMRSATYQLAASVLRQ--CGNSITMLVQYSPDKYHELEGSGSSSAEN-ESV 1229
D ++ V + T+ + + G S+ + + + + L + +
Sbjct: 66 DVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELC----RGYPLPFDPDDPNTSLVTS 121
Query: 1230 SGRGSGEP 1237
EP
Sbjct: 122 VAILDKEP 129
Score = 56.7 bits (137), Expect = 2e-09
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 10/103 (9%)
Query: 1236 EPRFLMIETRKCSN-LGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTD 1291
+ +F+ + RK S G ++VGG + + S+ G + TGD I+ N T
Sbjct: 16 KGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTC 75
Query: 1292 LRAATAEEAAYEL--AKPADKVTVLAQYSVERYNEVKDKPGDS 1332
+ T + V + + R + P D
Sbjct: 76 VLGHTHAQVVKIFQSIPIGASVDLE----LCRGYPLPFDPDDP 114
Score = 50.9 bits (122), Expect = 2e-07
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP--DVLTIT 263
+ L I + AA +G + GD ++S+N+ V G + A + + + P + +
Sbjct: 42 DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHA-QVVKIFQSIPIGASVDLE 100
Query: 264 TLKPTSLGEHSPRVHRKSVNSST 286
+ L + V S
Sbjct: 101 LCRGYPLPFDPDDPNTSLVTSVA 123
Score = 50.9 bits (122), Expect = 2e-07
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP--DVLTIT 887
+ L I + AA +G + GD ++S+N+ V G + A + + + P + +
Sbjct: 42 DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHA-QVVKIFQSIPIGASVDLE 100
Query: 888 TLKPTSLGEHSPRVHRKSVNSST 910
+ L + V S
Sbjct: 101 LCRGYPLPFDPDDPNTSLVTSVA 123
Score = 34.4 bits (79), Expect = 0.086
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 9/66 (13%)
Query: 49 DSAIDTDLQEWDTEVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV-- 106
+ E + + L + G +VGG + D + + ++V
Sbjct: 5 KPFFTRNPSELKGKFIHTKLRK--SSRGFGFTVVGGDE-----PDEFLQIKSLVLDGPAA 57
Query: 107 TDGKLK 112
DGK++
Sbjct: 58 LDGKME 63
Score = 29.8 bits (67), Expect = 3.0
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRS--SGTSALMVIRRRR 806
+ D IV VN+ + V++ +S G S + + R
Sbjct: 63 ETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGY 105
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 59.8 bits (145), Expect = 5e-11
Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 1124 PHPGELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINM 1183
+ LG +Q G+ + ++ +A + G++VG +++E+ G ++
Sbjct: 9 MGNVTTVLIRRPDLRYQLGFSVQ----NGI-ICSLMRGGIAERGGVRVGHRIIEINGQSV 63
Query: 1184 RSATYQLAASVLRQCGNSITMLV 1206
+ ++ +L I M
Sbjct: 64 VATPHEKIVHILSNAVGEIHMKT 86
Score = 52.4 bits (126), Expect = 2e-08
Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 813 VTTQLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSARE 872
+ + Y G ++++G IC + G +A + G + VG R++ IN ++V +
Sbjct: 14 TVLIRRPDLRYQLGFSVQNG-IICSLMRGGIAERGG-VRVGHRIIEINGQSVVAT-PHEK 70
Query: 873 GMALLSDSPDVLTITTLKPTS 893
+ +LS++ + + T+ P +
Sbjct: 71 IVHILSNAVGEIHMKTM-PAA 90
Score = 50.9 bits (122), Expect = 5e-08
Identities = 18/74 (24%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 196 NNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSD 255
+ Y G ++++G IC + G +A + G + VG R++ IN ++V + + +LS+
Sbjct: 21 DLRYQLGFSVQNG-IICSLMRGGIAERGG-VRVGHRIIEINGQSVVAT-PHEKIVHILSN 77
Query: 256 SPDVLTITTLKPTS 269
+ + + T+ P +
Sbjct: 78 AVGEIHMKTM-PAA 90
Score = 47.0 bits (112), Expect = 2e-06
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 1250 LGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPAD 1309
LG S+ G + S+ G + G+R G RI+E NG + A E+ + L+
Sbjct: 26 LGFSVQNG-----IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVG 80
Query: 1310 KVTVL 1314
++ +
Sbjct: 81 EIHMK 85
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 60.3 bits (146), Expect = 6e-11
Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 7/105 (6%)
Query: 1127 GELRRVHIDK-SVEPLGIQIQ--CLDSGGVFVSTVSEHSLASQV--GLQVGDQLLEVCGI 1181
L + + G ++ V VS V+ + A L GDQ++ + G
Sbjct: 14 DNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGR 73
Query: 1182 NMRSATYQLAASVLRQCGNSITMLVQYS--PDKYHELEGSGSSSA 1224
++ T+ ++ + + P+ +++ S+
Sbjct: 74 DIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVEESGPSS 118
Score = 58.7 bits (142), Expect = 2e-10
Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 10/121 (8%)
Query: 1218 GSGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYS 1275
GS SS G + ++ + G ++ GG + + V V G+
Sbjct: 1 GSSGSSGNG----GIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADL 56
Query: 1276 A--GLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVER--YNEVKDKPGD 1331
L GD+++ NG D+ T ++ + ++ + V +V ++ G
Sbjct: 57 CVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVEESGP 116
Query: 1332 S 1332
S
Sbjct: 117 S 117
Score = 45.3 bits (107), Expect = 1e-05
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 202 GLTLESGLYICKISPGSLAAK-EGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 260
G + + + +++PG+ A L GD+V+ IN R + + + + + S +
Sbjct: 36 GYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHD-QVVLFIKASCERH 94
Query: 261 TIT 263
+
Sbjct: 95 SGE 97
Score = 45.3 bits (107), Expect = 1e-05
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 826 GLTLESGLYICKISPGSLAAK-EGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 884
G + + + +++PG+ A L GD+V+ IN R + + + + + S +
Sbjct: 36 GYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHD-QVVLFIKASCERH 94
Query: 885 TIT 887
+
Sbjct: 95 SGE 97
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 59.2 bits (144), Expect = 7e-11
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 1128 ELRRVHIDKSVEPLGIQIQC-LDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSA 1186
EL VHI K G I GG V + + GL+ GD ++EV N+++
Sbjct: 3 ELITVHIVKGPMGFGFTIADSPGGGGQRVKQIVDS--PRSRGLKEGDLIVEVNKKNVQAL 60
Query: 1187 TYQLAASVLRQC--GNSITMLVQ 1207
T+ +L + G+ +T+LVQ
Sbjct: 61 THNQVVDMLVESPKGSEVTLLVQ 83
Score = 48.8 bits (117), Expect = 3e-07
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 1237 PRFLMIETRKCSN-LGISLVGGNAV-GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRA 1294
+ + K G ++ G V + S GL+ GD I+E N +++A
Sbjct: 2 MELITVHIVKGPMGFGFTIADSPGGGGQRVKQIVDS--PRSRGLKEGDLIVEVNKKNVQA 59
Query: 1295 ATAEEAAYEL--AKPADKVTVLAQYSVERYNEV 1325
T + L + +VT+L V+R +
Sbjct: 60 LTHNQVVDMLVESPKGSEVTLL----VQRQTRL 88
Score = 35.3 bits (82), Expect = 0.018
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 201 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 244
G + +I + + L GD ++ +N + V L+
Sbjct: 21 ADSPGGGGQRVKQIVD---SPRSRGLKEGDLIVEVNKKNVQALT 61
Score = 35.3 bits (82), Expect = 0.018
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 825 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 868
G + +I + + L GD ++ +N + V L+
Sbjct: 21 ADSPGGGGQRVKQIVD---SPRSRGLKEGDLIVEVNKKNVQALT 61
Score = 30.7 bits (70), Expect = 0.64
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSS--GTSALMVIRRR 805
K D IV VN + ++ V++ + S G+ ++++R+
Sbjct: 44 KEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQ 85
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus}
SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Length = 109
Score = 59.8 bits (145), Expect = 7e-11
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 1152 GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQY 1208
++ +V E +A + GL++GD L+EV G N+ ++ +++RQ GN++ + V
Sbjct: 46 LQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM 102
Score = 51.4 bits (123), Expect = 7e-08
Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 15/104 (14%)
Query: 1236 EPRFLMIETRKCSNLGISLVGG--------------NAVGIYVHSVQSGSLGYSAGLRTG 1281
+ + ++++ + G L G Y+ SV G + + AGLR G
Sbjct: 7 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMG 66
Query: 1282 DRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEV 1325
D ++E NG ++ + + + ++ V R+ ++
Sbjct: 67 DFLIEVNGQNVVKVGHRQVV-NMIRQGGNTLMVKVVMVTRHPDM 109
Score = 43.7 bits (103), Expect = 4e-05
Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 261
+ Y+ + G +A + G L +GD ++ +N + V + R+ + ++ + L
Sbjct: 40 TPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGH-RQVVNMIRQGGNTLM 97
Query: 262 ITTL 265
+ +
Sbjct: 98 VKVV 101
Score = 43.7 bits (103), Expect = 4e-05
Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 885
+ Y+ + G +A + G L +GD ++ +N + V + R+ + ++ + L
Sbjct: 40 TPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGH-RQVVNMIRQGGNTLM 97
Query: 886 ITTL 889
+ +
Sbjct: 98 VKVV 101
Score = 32.1 bits (73), Expect = 0.37
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTS-ALMVIRRRR 806
++ D ++ VN + V R V+ +R G + + V+ R
Sbjct: 64 RMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR 105
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 59.3 bits (144), Expect = 9e-11
Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 1126 PGELRRVHIDKSVEPLGIQI------QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEV 1178
E++ V + K + LG I + + ++ +A + G L GD+L+ V
Sbjct: 13 SPEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSV 72
Query: 1179 CGINMRSATYQLAASVLRQCGN-SITMLVQYSP 1210
+ + + A +L+ + + + P
Sbjct: 73 NEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP 105
Score = 53.2 bits (128), Expect = 2e-08
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 13/102 (12%)
Query: 1220 GSSSAENESVSGRGSGEPRFLMIETRKCSN-LGISLVGG------NAVGIYVHSVQSGSL 1272
GSS S P ++E K LG S++ I + S+ + +
Sbjct: 1 GSSG----SSGELALWSPEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGV 56
Query: 1273 GYSAG-LRTGDRILEYNGTDLRAATAEEAAYEL-AKPADKVT 1312
+G L GDR++ N L + EA L A P V
Sbjct: 57 AERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVH 98
Score = 51.6 bits (124), Expect = 5e-08
Identities = 18/72 (25%), Positives = 30/72 (41%)
Query: 200 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 259
D S + I + +A + G L GDR++S+N +D S A L + P +
Sbjct: 37 DPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGL 96
Query: 260 LTITTLKPTSLG 271
+ + S G
Sbjct: 97 VHLGICSGPSSG 108
Score = 51.6 bits (124), Expect = 5e-08
Identities = 18/72 (25%), Positives = 30/72 (41%)
Query: 824 DHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV 883
D S + I + +A + G L GDR++S+N +D S A L + P +
Sbjct: 37 DPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGL 96
Query: 884 LTITTLKPTSLG 895
+ + S G
Sbjct: 97 VHLGICSGPSSG 108
Score = 40.5 bits (95), Expect = 5e-04
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 50 SAIDTDLQEWDTEVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--T 107
S +L W EV + L + LG ++ DP P S I + ++V V
Sbjct: 3 SGSSGELALWSPEVKIVELVK--DCKGLGFSILDY-QDPLDPTRSVIVIRSLVADGVAER 59
Query: 108 DGKLK 112
G L
Sbjct: 60 SGGLL 64
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ,
guanine-nucleotide releasing factor, phosphoprotein, SH3
domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 59.6 bits (144), Expect = 2e-10
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 15/107 (14%)
Query: 1121 SHKPHPGELRRVHIDKS-VEPLGIQIQ--------------CLDSGGVFVSTVSEHSLAS 1165
S + + + V + K E G ++ ++ +V E +A
Sbjct: 20 SGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAW 79
Query: 1166 QVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDK 1212
+ GL++GD L+EV G N+ ++ +++RQ GN++ + V
Sbjct: 80 RAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRH 126
Score = 51.1 bits (122), Expect = 1e-07
Identities = 19/128 (14%), Positives = 42/128 (32%), Gaps = 15/128 (11%)
Query: 1214 HELEGSGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG--------------NA 1259
H + + ++++ + G L G
Sbjct: 5 HHHHHHSQDPLVPRGSGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFP 64
Query: 1260 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSV 1319
Y+ SV G + + AGLR GD ++E NG ++ + + + ++ V
Sbjct: 65 ALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVV-NMIRQGGNTLMVKVVMV 123
Query: 1320 ERYNEVKD 1327
R+ ++ +
Sbjct: 124 TRHPDMDE 131
Score = 41.5 bits (97), Expect = 3e-04
Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 261
+ Y+ + G +A + G L +GD ++ +N + V + R+ + ++ + L
Sbjct: 60 TPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKV-GHRQVVNMIRQGGNTLM 117
Query: 262 ITTL 265
+ +
Sbjct: 118 VKVV 121
Score = 41.5 bits (97), Expect = 3e-04
Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLT 885
+ Y+ + G +A + G L +GD ++ +N + V + R+ + ++ + L
Sbjct: 60 TPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKV-GHRQVVNMIRQGGNTLM 117
Query: 886 ITTL 889
+ +
Sbjct: 118 VKVV 121
Score = 30.7 bits (69), Expect = 1.6
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTS-ALMVIRRRR 806
++ D ++ VN + V R V+ +R G + + V+ R
Sbjct: 84 RMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR 125
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 58.7 bits (142), Expect = 2e-10
Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 5/89 (5%)
Query: 1124 PHPGELRRVHIDK-SVEPLGIQIQ--CLDSGGVFVSTVSEHSLASQV--GLQVGDQLLEV 1178
L + + G ++ V VS V+ + A L GDQ++ +
Sbjct: 13 IPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLI 72
Query: 1179 CGINMRSATYQLAASVLRQCGNSITMLVQ 1207
G ++ T+ ++ + +
Sbjct: 73 NGRDIAEHTHDQVVLFIKASCERHSGELM 101
Score = 58.3 bits (141), Expect = 2e-10
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 1220 GSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSA- 1276
GSS + G + ++ + G ++ GG + + V V G+
Sbjct: 1 GSSPEKPTPNGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCV 60
Query: 1277 -GLRTGDRILEYNGTDLRAATAEEA 1300
L GD+++ NG D+ T ++
Sbjct: 61 PRLNEGDQVVLINGRDIAEHTHDQV 85
Score = 44.8 bits (106), Expect = 1e-05
Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 795 GTSALMVIRRRRVGARSLVTTQLQLNNSYDHGLTLESG------LYICKISPGSLAAK-E 847
G+S + +LV +++ + + G ++ G + + +++PG+ A
Sbjct: 1 GSSPEKPTPNGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCV 60
Query: 848 GSLAVGDRVLSINNRTVDGLS 868
L GD+V+ IN R + +
Sbjct: 61 PRLNEGDQVVLINGRDIAEHT 81
Score = 44.4 bits (105), Expect = 2e-05
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 202 GLTLESGLYICKISPGSLAAK-EGSLAVGDRVLSINNRTVDGLS 244
G + + + +++PG+ A L GD+V+ IN R + +
Sbjct: 38 GYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHT 81
Score = 30.2 bits (68), Expect = 1.6
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 8/44 (18%)
Query: 72 SPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV---TDGKLK 112
N G + GG D + VS + G+ +L
Sbjct: 26 DENGRFGFNVKGGYD-----QKMPVIVSRVAPGTPADLCVPRLN 64
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 58.6 bits (142), Expect = 2e-10
Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 1218 GSGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGGN----AVGIYVHSVQSGSLG 1273
GS SS +P F +I K + LG+ ++GG +Y+H V G
Sbjct: 1 GSSGSSGSPLD------RDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDC 54
Query: 1274 YSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVER 1321
Y G L+ GD+++ N + + EEA + + + + + R
Sbjct: 55 YKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR 103
Score = 55.1 bits (133), Expect = 3e-09
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 1126 PGELRRVHIDKSVEPLGIQI----QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCG 1180
RV LG++I + V++ V + G L+ GDQL+ +
Sbjct: 12 RDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINK 71
Query: 1181 INMRSATYQLAASVLRQCGNSITMLVQ 1207
+M +++ A S++ + +
Sbjct: 72 ESMIGVSFEEAKSIITRAKLRSESPWE 98
Score = 49.7 bits (119), Expect = 2e-07
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALL------SDSPDVL 260
+YI ++ PG K+G L GD+++SIN ++ G+S E +++ S+SP +
Sbjct: 41 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFE-EAKSIITRAKLRSESPWEI 99
Query: 261 TITTLKPTS 269
P+S
Sbjct: 100 AFIRSGPSS 108
Score = 49.7 bits (119), Expect = 2e-07
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALL------SDSPDVL 884
+YI ++ PG K+G L GD+++SIN ++ G+S E +++ S+SP +
Sbjct: 41 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFE-EAKSIITRAKLRSESPWEI 99
Query: 885 TITTLKPTS 893
P+S
Sbjct: 100 AFIRSGPSS 108
Score = 33.6 bits (77), Expect = 0.11
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 71 LSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLKK 113
++ LGL+++GG + +Y+ ++ G DG+LK
Sbjct: 21 VTKETGLGLKILGGIN---RNEGPLVYIHEVIPGGDCYKDGRLKP 62
Score = 28.9 bits (65), Expect = 4.9
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSA-----LMVIRRR 805
K D +V +N VS + + + + IR
Sbjct: 61 KPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSG 105
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 58.8 bits (142), Expect = 2e-10
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 1150 SGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQ 1207
+FV V E A + GL GD++++V G ++ TY ++++ ++ + V
Sbjct: 60 MDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVM 117
Score = 48.4 bits (115), Expect = 1e-06
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 1261 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 1314
I+V V+ G + AGL TGDRI++ NG + T + + + +
Sbjct: 62 TIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELS 115
Score = 48.4 bits (115), Expect = 1e-06
Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 191 DGLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGM 250
+ + L +++ ++ G A + G L GDR++ +N +V G + + +
Sbjct: 45 ENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTY-SQVI 102
Query: 251 ALLSDSPDVLTITTLKPTS 269
AL+ +S L ++ + S
Sbjct: 103 ALIQNSDTTLELSVMPKDS 121
Score = 48.0 bits (114), Expect = 1e-06
Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 818 QLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALL 877
+ L +++ ++ G A + G L GDR++ +N +V G + + +AL+
Sbjct: 48 NRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTY-SQVIALI 105
Query: 878 SDSPDVLTITTLKPTS 893
+S L ++ + S
Sbjct: 106 QNSDTTLELSVMPKDS 121
Score = 29.1 bits (65), Expect = 4.7
Identities = 9/46 (19%), Positives = 20/46 (43%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARS 811
D I++VN + V+ +++S T+ + + + G S
Sbjct: 80 CTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDSGPSS 125
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics,
mouse cDNA, riken structural genomics/proteomics
initiative; NMR {Mus musculus} SCOP: b.36.1.1
Length = 126
Score = 58.7 bits (142), Expect = 2e-10
Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 7/122 (5%)
Query: 1108 RQNKRNSLPDYCCSHKPHPGELRRVHIDKSVEPLGIQIQCLDSGGVFVSTVSEHSLASQV 1167
+ ++ + + LG+ + + + +S + A+
Sbjct: 7 GSKNEKEQLSKAKASVSSLNKVIQTKLTVGNLGLGLVVIQ-NGPYLQISHLINKGAAASD 65
Query: 1168 G-LQVGDQLLEVCGINMRSATYQLAASVLRQC--GNSITMLVQ--YSPDKYHELEGSGSS 1222
G LQ GD L+ V N+ T + +L+ G + + + E + SG S
Sbjct: 66 GILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFLEIP-QEWQDSGPS 124
Query: 1223 SA 1224
S
Sbjct: 125 SG 126
Score = 51.4 bits (123), Expect = 1e-07
Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 15/124 (12%)
Query: 1219 SGSSSAENES-----VSGRGSGEPRFLMIETRKCSN-LGISLVGGNAVGIYVHSVQSGSL 1272
SGSS ++NE S + + + + LG+ ++ + + + +
Sbjct: 3 SGSSGSKNEKEQLSKAKASVSSLNKVIQTKLTVGNLGLGLVVIQNGP-YLQISHLINKGA 61
Query: 1273 GYSAG-LRTGDRILEYNGTDLRAATAEEAAYEL--AKPADKVTVLAQYSVER-YNEVKDK 1328
S G L+ GD ++ ++ T E L + + R + E+ +
Sbjct: 62 AASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIK----AYRGFLEIPQE 117
Query: 1329 PGDS 1332
DS
Sbjct: 118 WQDS 121
Score = 47.6 bits (113), Expect = 2e-06
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 201 HGLTLESG---LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 244
GL + L I + AA +G L GD ++S+ + V G +
Sbjct: 40 LGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYT 86
Score = 47.6 bits (113), Expect = 2e-06
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 825 HGLTLESG---LYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 868
GL + L I + AA +G L GD ++S+ + V G +
Sbjct: 40 LGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYT 86
Score = 29.1 bits (65), Expect = 6.2
Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRS--SGTSALMVIRR 804
+ D ++ V + + + R L+ +++ GT + R
Sbjct: 69 QPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYR 109
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 58.3 bits (141), Expect = 3e-10
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 11/107 (10%)
Query: 1126 PGELRRVHIDKSVEPLGIQIQCLDSG-GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMR 1184
G L + + K + G I DS G V + + GLQ GD + E+ N++
Sbjct: 10 AGLLVTIPLIKGPKGFGFAI--ADSPTGQKVKMILDSQWCQ--GLQKGDIIKEIYHQNVQ 65
Query: 1185 SATYQLAASVLRQC--GNSITMLVQ----YSPDKYHELEGSGSSSAE 1225
+ T+ VL+Q G + +L+ SP K ++ +
Sbjct: 66 NLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKMGSGSGQITK 112
Score = 54.5 bits (131), Expect = 5e-09
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 6/92 (6%)
Query: 1228 SVSGRGSGEPRFLMIETRKCSN-LGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILE 1286
+++ + I K G ++ G V + GL+ GD I E
Sbjct: 2 AMATLYKKAGLLVTIPLIKGPKGFGFAIADS-PTGQKVKMILDSQW--CQGLQKGDIIKE 58
Query: 1287 YNGTDLRAATAEEAAYEL--AKPADKVTVLAQ 1316
+++ T + L V +L
Sbjct: 59 IYHQNVQNLTHLQVVEVLKQFPVGADVPLLIL 90
Score = 33.3 bits (76), Expect = 0.15
Identities = 8/43 (18%), Positives = 15/43 (34%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 244
G + K+ + L GD + I ++ V L+
Sbjct: 26 GFAIADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLT 68
Score = 33.3 bits (76), Expect = 0.15
Identities = 8/43 (18%), Positives = 15/43 (34%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 868
G + K+ + L GD + I ++ V L+
Sbjct: 26 GFAIADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLT 68
Score = 31.0 bits (70), Expect = 0.85
Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRS--SGTSALMVIRRRRVGARS 811
+ D I + + + N++ V+E ++ G ++I R + +
Sbjct: 51 QKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPT 98
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 58.3 bits (141), Expect = 4e-10
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 1218 GSGSSSAENESVSGRGSGEPRFLMIETRKCSN--LGISLVGG------NAVGIYVHSVQS 1269
SG + S E L I + LG+SL G +GI++ S+
Sbjct: 5 SSGLKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIH 64
Query: 1270 GSLGYSAG-LRTGDRILEYNGTDLRAATAEEAA 1301
G + G LR D+++ NG L + EA
Sbjct: 65 GGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAM 97
Score = 56.3 bits (136), Expect = 2e-09
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 1119 CCSHKPHPGELRRVHI---DKSVEPLGIQI------QCLDSGGVFVSTVSEHSLASQVG- 1168
C + E + I D LG+ + + G+F+ ++ A + G
Sbjct: 14 CYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGR 73
Query: 1169 LQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITML 1205
L++ DQL+ V G + + A LR+ + +
Sbjct: 74 LRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNI 110
Score = 47.5 bits (113), Expect = 2e-06
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 244
+ G++I I G A K+G L + D+++++N T+ G S
Sbjct: 54 DLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKS 92
Score = 47.5 bits (113), Expect = 2e-06
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 868
+ G++I I G A K+G L + D+++++N T+ G S
Sbjct: 54 DLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKS 92
Score = 38.2 bits (89), Expect = 0.004
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 72 SPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
S + LG+ L G + D I++ +I+ G DG+L+
Sbjct: 34 SGSAGLGVSLKGNKSRE-TGTDLGIFIKSIIHGGAAFKDGRLR 75
Score = 30.2 bits (68), Expect = 2.5
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSAL-------MVIRRRR 806
++ND ++ VN S +ET+R S + +VI RR
Sbjct: 75 RMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRS 122
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 57.6 bits (139), Expect = 6e-10
Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
Query: 1218 GSGSSSAENESVSGRGSGEPRFLMIETRKCSN-LGISLVGG----NAVGIYVHSVQSGSL 1272
GS SS + R E + + + LG+++ + +GIY+ + S+
Sbjct: 1 GSSGSSGDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSI 60
Query: 1273 GYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQ 1316
G +R GDRI++ NG +++ A + + ++A+
Sbjct: 61 AAKDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIAR 105
Score = 52.9 bits (127), Expect = 3e-08
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTI 262
+ G+YI +I P S+AAK+G + GDR++ IN V A + + L I
Sbjct: 47 DIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLI 103
Score = 52.9 bits (127), Expect = 3e-08
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTI 886
+ G+YI +I P S+AAK+G + GDR++ IN V A + + L I
Sbjct: 47 DIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLI 103
Score = 51.0 bits (122), Expect = 1e-07
Identities = 20/95 (21%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 1124 PHPGELRRVHIDK--SVEPLGIQIQCLDSG----GVFVSTVSEHSLASQVG-LQVGDQLL 1176
EL V + + S + LG+ + G+++S + +S+A++ G ++ GD+++
Sbjct: 15 REELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRII 74
Query: 1177 EVCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211
++ GI +++ +A +L N L+ P+
Sbjct: 75 QINGIEVQNREEAVA--LLTSEENKNFSLLIARPE 107
Score = 47.9 bits (114), Expect = 1e-06
Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 45 NYSHDSAIDTDLQEWDTEVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKG 104
+ I ++ + E+ +++L ++ + LGL + DD +D IY+S I
Sbjct: 2 SSGSSGDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDD---EDDIGIYISEIDPN 58
Query: 105 SV--TDGKLKK 113
S+ DG++++
Sbjct: 59 SIAAKDGRIRE 69
Score = 34.8 bits (80), Expect = 0.049
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR 806
+ D I+++N ++ N + + L T + +L++ R
Sbjct: 68 REGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIARPEL 108
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.8 bits (152), Expect = 9e-10
Identities = 104/637 (16%), Positives = 199/637 (31%), Gaps = 204/637 (32%)
Query: 1080 MSNGSIEKTSERGSPMPT---FHVEVLSPGLRQNKRNSLPD----YCCSHKP-HPGEL-- 1129
+S+GS+E +PT F L ++ LP+ + +P P EL
Sbjct: 11 LSHGSLEHVL----LVPTASFFIASQL----QEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 1130 RRV-HIDKSVEP--LGIQIQCLDSG-GVFVSTV---SE-HSLASQVGLQVGDQLLEVCGI 1181
+ + ++ VEP +G Q L+ F + ++ H+LA+++ + L++ +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 1182 NMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSS---SAENESVS------GR 1232
+++ Y A + ++ DK S+ + + G+
Sbjct: 123 -IKN--YITARIMAKR-----------PFDKKSN-----SALFRAVGEGNAQLVAIFGGQ 163
Query: 1233 GSGEPRFLMIETRKCSNLGISLVG------GNAVGIYVHSVQSGSLGYSAGLRTGDRILE 1286
G+ + F E R LVG + + + ++ GL + ILE
Sbjct: 164 GNTDDYFE--ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL---N-ILE 217
Query: 1287 YNGTDLR-AATAEEAAYELAK-----PADKVTVLAQYSVERYNEVKDKPGDSF-YMRALF 1339
+ L + + Y L P V LA Y V + PG+ Y++
Sbjct: 218 W----LENPSNTPDKDY-LLSIPISCPLIGVIQLAHYVVTA-KLLGFTPGELRSYLKGAT 271
Query: 1340 SRTGDLGDALQL-------RFHKDDILYVDNTMFNGVPGHWRAWLVDADGFR-QQC---- 1387
+ L A+ + F + +F ++ G R +
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAIT-VLF---------FI----GVRCYEAYPNT 317
Query: 1388 GIIPSKYKVEEE---------LLLRR-SLGDLESDARRATRRSFFRRKKHQRSDSKELAS 1437
+ PS + E L + + ++ + T K+
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK-TNSHLPAGKQ---------VE 367
Query: 1438 FSNINLGWYSD-----SG---TLNEDSVSLASY--------------QRVIRLNSE--PV 1473
S +N SG +L +++L +R ++ ++ PV
Sbjct: 368 ISLVN----GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV 423
Query: 1474 LRPV---ILVGALSDTVTDKLLQDFPDKFVRCAPEIMHCPQAAMEKGLADNLFVDYRKKG 1530
P +LV A +D + +D V + + P G D R
Sbjct: 424 ASPFHSHLLVPA-----SDLINKDLVKNNVSFNAKDIQIPVYDTFDG------SDLRVLS 472
Query: 1531 AY-----FECTSVAAVK-DACDKNNAHVILDV---SLAGVERLHRQHVYPIVLLIKFKST 1581
+C VK + + A ILD +G+ L T
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVL----------------T 516
Query: 1582 KQIKE---IKEIRDGRYSSLDKVTAKAAKEMYEHGLK 1615
+ K+ ++ I G +LD ++G K
Sbjct: 517 HRNKDGTGVRVIVAG---TLDINPDD------DYGFK 544
Score = 60.4 bits (146), Expect = 5e-09
Identities = 107/758 (14%), Positives = 185/758 (24%), Gaps = 322/758 (42%)
Query: 555 TLSY-QIE-TLKREIASALHDRDKALKECNDLRERF--------GEFTAAKEECQREAFH 604
TLS+ +E L + +A + L+E+F F A E
Sbjct: 10 TLSHGSLEHVL--LVPTASFFI------ASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 605 ARF-EYAMRMGERDSSRKERNEVEAASMDLFGKCQKERMDNLEANQEIDRLRKHTDKLQA 663
+F Y + E S + ++V + F E LE N +I H L A
Sbjct: 62 GKFLGYVSSLVE-PSKVGQFDQVLNLCLTEF-----EN-CYLEGN-DI-----HA--LAA 106
Query: 664 ELQDQSVNYLFILTESIQEAEVSKRRRDWAFSERDKIEVIDSYHTKHAGRHKRGKELDKN 723
+L + + K + E+I +Y R + DK
Sbjct: 107 KL------------LQENDTTLVKTK-----------ELIKNYI---TARIMAKRPFDKK 140
Query: 724 GGT--WPKARSGPV----IENGTGTILHPRRHKERLPLSALLNNPPSYKVNDCIVRVNNL 777
+ + G I G G +E L L V D I
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDY--FEE---LRDLYQTYHVL-VGDLIKFSAET 194
Query: 778 DCSNVSKRMVLETVRSSGTSALMVIRRRRVGARSLVTTQLQLNNSYDHGLTLES------ 831
L L+ T L + GL +
Sbjct: 195 ----------LS---------------------ELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 832 ------------------GL-----YI--CKI---SPGSLAAK-EGSLAVGDRVLS---I 859
G+ Y+ K+ +PG L + +G+ +++ I
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 860 NNRTVDGLSSAREGMALLSDSPDVLTITTLKPTSLGEHSPRVHRKSVNSSTQTMPLYVRY 919
+ + +T+ +G + P
Sbjct: 284 --------AETDSWESFFVSVRKAITVLFF----IGVRC-----------YEAYPNT--- 317
Query: 920 GDQPPPDSYQVPKTSTKSHDPAKPSPSSSGGGGKWDSLREKMQGVRRRGGGEEGKRSNR- 978
PP + + ++ PSP M + + N+
Sbjct: 318 --SLPPSILE----DSLENNEGVPSP---------------MLSISNLTQEQVQDYVNKT 356
Query: 979 NSSPPVTFEQEQVDAIAEL----DSFVHTHSPSDGSSPHYHKAPRSLASAHSHPGGPNNG 1034
NS P +QV I+ L + V + G P+SL +
Sbjct: 357 NSHLP---AGKQV-EIS-LVNGAKNLVVS-----GP-------PQSLYGLNLT------- 392
Query: 1035 AGGTSYETSSYHSYDAAGTFPRKKENQRFRIPSNPSVAFKTSGTKMSNGSIEKTSERGSP 1094
A +Q RIP F SER
Sbjct: 393 ----------LRKAKAP-----SGLDQS-RIP------F---------------SERK-- 413
Query: 1095 MPTFHVEVLSPGLRQNKRNSLPDYCCSHKPH--------PGELRRVHIDKSVEPLGIQIQ 1146
F L P + P + H +L + ++ + + + I
Sbjct: 414 -LKFSNRFL-P-------VASP-F---HSHLLVPASDLINKDLVKNNVSFNAKDIQIP-- 458
Query: 1147 CLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQ--------- 1197
V+ T G ++R + ++ ++
Sbjct: 459 ------VY-DTFD--------------------GSDLRVLSGSISERIVDCIIRLPVKWE 491
Query: 1198 --CGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRG 1233
T ++ + P G G + N G G
Sbjct: 492 TTTQFKATHILDFGPGG---ASGLGVLTHRN--KDGTG 524
Score = 60.4 bits (146), Expect = 5e-09
Identities = 97/653 (14%), Positives = 204/653 (31%), Gaps = 197/653 (30%)
Query: 260 LTITTLKPTSLGEHSPRVHRKSVNSSTQTMPLYVRQHNETVRRGDHTLKELEYYRGQHQA 319
+ + +P +L S + T + + + L+E ++ + +
Sbjct: 1 MDAYSTRPLTLSHGSLEH---VLLVPTASFFIASQ------------LQE-QFNKILPEP 44
Query: 320 AMAQLEAAAQESSS---LRSKYSDLISDKQRLDRELLELRSGCCTQPESDDAGSADSLNQ 376
AA E ++ L K+ +S E G D +
Sbjct: 45 TEG--FAADDEPTTPAELVGKFLGYVSS-----------------LVEPSKVGQFDQVLN 85
Query: 377 HYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCED------- 429
L ++E Y L +D+ H+ A L+ + + K+ ++
Sbjct: 86 L---CLTEFEN---CY--LEG--NDI---HALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 430 ----MNQEKNTALRERNGLKQQCTAAIR-------QWDIALRERNEYQEALAKVQQQHED 478
+++ N+AL + + Q + ++Y E L + Q +
Sbjct: 133 AKRPFDKKSNSAL-----FRAVGEGNAQLVAIFGGQGNT-----DDYFEELRDLYQTYHV 182
Query: 479 AVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSED------- 531
V ++ A + L L A + ++ ++ + + +D
Sbjct: 183 LVGDLIKFSA------ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 532 ------LTQAVRKI---KTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECN 582
+ Q + K L EL K + + + +A+ A+ E +
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT----GHSQGLVTAV-----AIAETD 287
Query: 583 DLRERFGEFTAAKE----------ECQREAF-HARFEYAMRMGERDSSRKERNEVEAASM 631
E F F + ++ C EA+ + ++ DS E NE + M
Sbjct: 288 S-WESF--FVSVRKAITVLFFIGVRCY-EAYPNTSLPPSIL---EDS--LENNEGVPSPM 338
Query: 632 ----DLFGKCQKERMDNLEANQEIDRLRKHTDKLQAELQDQSVNYL--------FILT-- 677
+L ++++ + +K + L + +++
Sbjct: 339 LSISNL----------------TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 678 -ESIQEAEVSKRRR------DWA---FSERDKIEV------IDS-YHTKH--AGRHKRGK 718
+S+ ++ R+ D + FSER K++ + S +H+ K
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSER-KLKFSNRFLPVASPFHSHLLVPASDLINK 441
Query: 719 ELDKNGGTWPKARSG-PVIENGTGTILHPRRHKERLPLSALLNNPPSYKVNDCIVR--VN 775
+L KN ++ PV + G+ L R + + DCI+R V
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDTFDGSDL--RVLSGSISER----------IVDCIIRLPVK 489
Query: 776 NLDCSNVSKRMVLE--TVRSSGTSALMVIRRRRVGARSLVTTQLQLNNSYDHG 826
+ +L+ +SG L + G R +V L +N D+G
Sbjct: 490 WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
Score = 50.0 bits (119), Expect = 7e-06
Identities = 48/273 (17%), Positives = 89/273 (32%), Gaps = 79/273 (28%)
Query: 426 QCEDMNQEKNTALRERNGLKQQCTAAIRQ-WDIALRE-RNEYQEALAKVQQQHEDAVKEI 483
Q + M + L + + A + W+ A ++ Y ++ + V
Sbjct: 1627 QEQGMGMD----LYKTS-------KAAQDVWNRADNHFKDTYGFSILDI-------VINN 1668
Query: 484 NTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHK-EMEKLSEDLTQAVRKIKTL 542
+ + K KR+ E YS ++ E K + EK+ +++ + T
Sbjct: 1669 PVNLTIHFGGEKG-KRIREN-------YSAMIFETIVDGKLKTEKIFKEINEHSTSY-TF 1719
Query: 543 EMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERF-------------G 589
E L T Q A L + KA E DL+ + G
Sbjct: 1720 RSEKGLL---SATQFTQP-------ALTLME--KAAFE--DLKSKGLIPADATFAGHSLG 1765
Query: 590 EFTA-AKEECQREAFHARFEYAMRM----GERDSSRKERNEVEAASMDLFGKCQKERM-- 642
E+ A A + E + + G R+E+ ++ + R+
Sbjct: 1766 EYAALA---SLADVMS--IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA-INPGRVAA 1819
Query: 643 -DNLEANQEI-DRLRKHTDK-LQAELQDQSVNY 672
+ EA Q + +R+ K T ++ VNY
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEI------VNY 1846
Score = 49.3 bits (117), Expect = 1e-05
Identities = 46/305 (15%), Positives = 94/305 (30%), Gaps = 105/305 (34%)
Query: 310 LEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLD-RELLELRSGCCTQPESDDA 368
++ Y+ +AA A + Y I D + L G +
Sbjct: 1633 MDLYK-TSKAAQDVWNRADN---HFKDTYGFSILDIVINNPVNLTIHFGGEKGK------ 1682
Query: 369 GSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCE 428
+ ++Y + + +ETI D K F + IN HST E+
Sbjct: 1683 ----RIRENYSAMI--FETIVDGKLKTEKIFKE-INEHST---SYTFRSEK--------G 1724
Query: 429 DMNQEKNT-------------ALRERNGLKQQ----------------CTA-------AI 452
++ + T L+ + GL A +
Sbjct: 1725 LLSATQFTQPALTLMEKAAFEDLKSK-GLIPADATFAGHSLGEYAALASLADVMSIESLV 1783
Query: 453 RQWDIALRERNEY-QEALAKVQQQHEDAVKEINTAM-AV---RMKAT---KDLKRLTEER 504
+ R Q A+ + D + N M A+ R+ A+ + L+ + E
Sbjct: 1784 E----VVFYRGMTMQVAVPR------DELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
Query: 505 -------------NAAMQEYSLIMS-ERDSVHKEMEKLSEDLTQA-VRKIKTLEMENKEL 549
N Q+Y + + + ++ + ++ L ++KI +E++
Sbjct: 1834 GKRTGWLVEIVNYNVENQQY--VAAGDLRAL----DTVTNVLNFIKLQKIDIIELQKSLS 1887
Query: 550 VEDKK 554
+E+ +
Sbjct: 1888 LEEVE 1892
Score = 42.3 bits (99), Expect = 0.002
Identities = 43/334 (12%), Positives = 89/334 (26%), Gaps = 118/334 (35%)
Query: 1289 GTDLRAATAEEAAYELAKPADKVTVLAQYSVERY-----NEVKDKPGDSFYMRALFSRTG 1343
G DL +AA ++ AD + + Y + V + P + + F G
Sbjct: 1632 GMDLYKT--SKAAQDVWNRADN------HFKDTYGFSILDIVINNPVN---LTIHF--GG 1678
Query: 1344 DLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYKVEEELLLR 1403
+ G ++ Y V G + + + ++ E+ LL
Sbjct: 1679 EKGKRIREN-------YSAMIFETIVDGKLKTEKIFKEINEHSTSYT---FRSEKGLL-- 1726
Query: 1404 RSLGDLESDARRA---TRRSFFR--RKKHQRSDSKELASFSNINLGWYS----DSGTLN- 1453
+ A ++ F + K A S LG Y+ + ++
Sbjct: 1727 ----SATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS---LGEYAALASLADVMSI 1779
Query: 1454 EDSVSLASYQRVIRLNSEPVLRPVILVGALSDTVTDKLLQDFP--DKFVRCAPEIMHCPQ 1511
E V + + R G +Q D+ R ++
Sbjct: 1780 ESLVEVV-FYR----------------G--------MTMQVAVPRDELGRSNYGMIAINP 1814
Query: 1512 AAMEKGLADNLFVDYRKKGAYFECTSVAAVKDACDK------------N-NAH----VIL 1554
+ + A++ ++ N N V
Sbjct: 1815 GRVAASFSQ------------------EALQYVVERVGKRTGWLVEIVNYNVENQQYVA- 1855
Query: 1555 DVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIK 1588
AG + + + ++ F ++I I+
Sbjct: 1856 ----AG----DLRALDTVTNVLNFIKLQKIDIIE 1881
Score = 34.6 bits (79), Expect = 0.33
Identities = 40/261 (15%), Positives = 69/261 (26%), Gaps = 89/261 (34%)
Query: 123 QCEDMNQEKNTALRERNGLKQQCTAAIRQ-WDIALRE-RNEYQEALAKVQQQ-------H 173
Q + M + L + + A + W+ A ++ Y ++ + H
Sbjct: 1627 QEQGMGMD----LYKTS-------KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH 1675
Query: 174 ED-----AVKEINTAMAVTNYLDGLQLNNSYDHGLTLESGLYICKISPGSLAAKE----G 224
++E +AM +DG + S Y + G L+A +
Sbjct: 1676 FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA 1735
Query: 225 SLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLKPT-------SLGEHSPRV 277
+ A L L P SLGE++
Sbjct: 1736 LTLME--------------------KAAFE----DLKSKGLIPADATFAGHSLGEYAALA 1771
Query: 278 HRKSVNSSTQTMPLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSK 337
V M + V + +YRG M A RS
Sbjct: 1772 SLADV------MSI-----ESLVE--------VVFYRGM---TMQV---AVPRDELGRSN 1806
Query: 338 YSDLISDKQR----LDRELLE 354
Y + + R +E L+
Sbjct: 1807 YGMIAINPGRVAASFSQEALQ 1827
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 62.6 bits (152), Expect = 1e-09
Identities = 24/212 (11%), Positives = 71/212 (33%), Gaps = 27/212 (12%)
Query: 376 QHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMN---- 431
+HY+ +N+ + + R + ++ + + KL + +V ++ N
Sbjct: 1895 RHYLDFINQVVLL---INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELD 1951
Query: 432 --------------QEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQH- 476
Q++ A ++ ++ + ++ + L K +
Sbjct: 1952 VKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGP 2011
Query: 477 -----EDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSED 531
E N + + + L + +EY+ ++ E + + E K+
Sbjct: 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2071
Query: 532 LTQAVRKIKTLEMENKELVEDKKTLSYQIETL 563
+ +++ + L E + + + Q+ T+
Sbjct: 2072 VDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103
Score = 44.1 bits (104), Expect = 5e-04
Identities = 35/294 (11%), Positives = 91/294 (30%), Gaps = 27/294 (9%)
Query: 393 DALRKR---FDDLINTHSTAVDKLEL----AQEEVARIKKQCEDMNQEKNTALRERNGLK 445
R L N +D A +V + +++ E + ++
Sbjct: 1789 PDFHNRSATSPALFN--RCVLDWFGEWSPEALFQVGS--EFTRNLDLENPQYIAPPVFIQ 1844
Query: 446 QQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMK------ATKDLKR 499
+ I R+ +L + Q + E N + R L
Sbjct: 1845 EAEIMGNNLMAIPPSHRDAVVSSLVYIHQ----TIGEANIRLLKRQGRQNYVTPRHYLDF 1900
Query: 500 LTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQ 559
+ + ++ + E+ ++ ++KL + Q +L +N+EL + + +
Sbjct: 1901 INQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQK 1960
Query: 560 IETLKREIASALHDRDKALKECNDLRERFGEFTAAKEECQREAFHARFEYAMRMGERDSS 619
++ + ++ +A + A + L R E K + + A +R
Sbjct: 1961 LKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLE 2020
Query: 620 RKERNEVEA-----ASMDLFGKCQKERMDNLE-ANQEIDRLRKHTDKLQAELQD 667
A++ K + +E ++++ + K++ ++
Sbjct: 2021 NAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDR 2074
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 56.2 bits (135), Expect = 1e-09
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 1126 PGELRRVHIDKS---VEPLGIQIQCLDSGG---VFVSTVSEHSLASQVGLQVGDQLLEVC 1179
P + +HI+KS + G + ++ G ++V++V E LAS+ GL+ GD++LE+
Sbjct: 13 PKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEIN 72
Query: 1180 GINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSS 1222
+ + L Q S+ +LV+ P+ +E SS
Sbjct: 73 NRAADALNSSMLKDFLSQ--PSLGLLVRTYPELEEGVESGPSS 113
Score = 55.8 bits (134), Expect = 2e-09
Identities = 32/118 (27%), Positives = 45/118 (38%), Gaps = 9/118 (7%)
Query: 1218 GSGSSSAENESVSGRGSGEPRFLMIETRKCSN--LGISLVGGNAVG---IYVHSVQSGSL 1272
GS SS E E + + IE + G SL G +YV+SV+ L
Sbjct: 1 GSSGSSGEIEICPK----VTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGL 56
Query: 1273 GYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYNEVKDKPG 1330
GL+ GD ILE N A + L++P+ + V +E E G
Sbjct: 57 ASKKGLKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRTYPELEEGVESGPSSG 114
Score = 48.5 bits (115), Expect = 7e-07
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 266
LY+ + LA+K+G L GD +L INNR D L+S+ LS L + T
Sbjct: 44 RRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSS-MLKDFLSQPSLGLLVRTYP 101
Query: 267 PTSLGEHSP 275
G S
Sbjct: 102 ELEEGVESG 110
Score = 48.5 bits (115), Expect = 7e-07
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTLK 890
LY+ + LA+K+G L GD +L INNR D L+S+ LS L + T
Sbjct: 44 RRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSS-MLKDFLSQPSLGLLVRTYP 101
Query: 891 PTSLGEHSP 899
G S
Sbjct: 102 ELEEGVESG 110
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 54.7 bits (132), Expect = 5e-09
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 1128 ELRRVHIDKS-VEPLGIQI----QCLDSGGVFVSTVSEHSLASQVG-LQVGDQLLEVCGI 1181
+ V ++ LGI I GG+++ ++ + + G ++ GD LL+V +
Sbjct: 5 NIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDM 64
Query: 1182 NMRSATYQLAASVLRQCGNS---ITMLV 1206
N + + A VLR + I + V
Sbjct: 65 NFENMSNDDAVRVLRDIVHKPGPIVLTV 92
Score = 54.0 bits (130), Expect = 9e-09
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 1250 LGISLVGG----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAA 1301
LGIS+VG GIY+ S+ G + G + GD +L+ N + + ++A
Sbjct: 19 LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAV 75
Score = 50.5 bits (121), Expect = 2e-07
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD-----VL 260
+ G+YI I G A +G + GD +L +N+ + +S+ + + +L D VL
Sbjct: 32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSND-DAVRVLRDIVHKPGPIVL 90
Query: 261 TITTLKPTSLGEHS 274
T+ S E
Sbjct: 91 TVAKSGGGSGNEVW 104
Score = 50.5 bits (121), Expect = 2e-07
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD-----VL 884
+ G+YI I G A +G + GD +L +N+ + +S+ + + +L D VL
Sbjct: 32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSND-DAVRVLRDIVHKPGPIVL 90
Query: 885 TITTLKPTSLGEHS 898
T+ S E
Sbjct: 91 TVAKSGGGSGNEVW 104
Score = 38.6 bits (90), Expect = 0.002
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 60 DTEVLDMNLTNLSPNEALGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLKK 113
++ + L N+ LG+ +VG ++ D IY+ +I+KG DG+++
Sbjct: 3 HMNIITVTL-NMEKYNFLGISIVGQSNE---RGDGGIYIGSIMKGGAVAADGRIEP 54
Score = 30.1 bits (68), Expect = 2.1
Identities = 7/49 (14%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMV---IRRRRVGARS 811
+ D +++VN+++ N+S + +R + + + G+ +
Sbjct: 53 EPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGGGSGN 101
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 53.8 bits (130), Expect = 5e-09
Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 1131 RVHIDKSVEPLGIQIQCLDS--GGVFVSTVSEHSLASQVG-LQVGDQLLEVCGINMRSAT 1187
+ KS G + D + + ++ A+ G ++ GD ++ V + T
Sbjct: 3 HTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHT 62
Query: 1188 YQLAASVLRQ--CGNSITMLV 1206
+ + + G S+ + +
Sbjct: 63 HAQVVKIFQSIPIGASVDLEL 83
Score = 52.7 bits (127), Expect = 1e-08
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 1242 IETRKCSN-LGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATA 1297
+ RK S G ++VGG + + S+ G + TGD I+ N T + T
Sbjct: 4 TKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH 63
Query: 1298 EEAAYEL--AKPADKVTVL 1314
+ V +
Sbjct: 64 AQVVKIFQSIPIGASVDLE 82
Score = 49.6 bits (119), Expect = 2e-07
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 263
+ L I + AA +G + GD ++S+N+ V G + A + + + P ++
Sbjct: 24 DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHA-QVVKIFQSIPIGASVD 80
Score = 49.6 bits (119), Expect = 2e-07
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887
+ L I + AA +G + GD ++S+N+ V G + A + + + P ++
Sbjct: 24 DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHA-QVVKIFQSIPIGASVD 80
Score = 33.0 bits (76), Expect = 0.097
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 77 LGLELVGGRDDPFYPNDSSIYVSNIVKGSV--TDGKLK 112
G +VGG + D + + ++V DGK++
Sbjct: 13 FGFTVVGGDE-----PDEFLQIKSLVLDGPAALDGKME 45
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell
junction, cell adhesion, signaling protein, nucleotide
exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Length = 94
Score = 54.2 bits (130), Expect = 5e-09
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 1124 PHPGELRRVHIDK---SVEPLGIQIQCLDSGG---VFVSTVSEHSLASQVGLQVGDQLLE 1177
+HI+K + + G + ++ G ++V++V E LAS+ GL+ GD++LE
Sbjct: 2 AMGKVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILE 61
Query: 1178 VCGINMRSATYQLAASVLRQCGNSITMLVQYSPD 1211
+ + + L Q S+ +LV+ P+
Sbjct: 62 INNRAADALNSSMLKDFLSQ--PSLGLLVRTYPE 93
Score = 50.7 bits (121), Expect = 7e-08
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 1250 LGISLVGGNAVG---IYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK 1306
G SL G +YV+SV+ L GL+ GD ILE N A + L++
Sbjct: 22 YGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ 81
Query: 1307 PADKVTV 1313
P+ + V
Sbjct: 82 PSLGLLV 88
Score = 49.2 bits (117), Expect = 3e-07
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Query: 808 GARSLVTTQLQL----NNSYDHGLTLESG-------LYICKISPGSLAAKEGSLAVGDRV 856
GA VT + + + +G +L S LY+ + LA+K+G L GD +
Sbjct: 1 GAMGKVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEI 59
Query: 857 LSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
L INNR D L+S LS L + T
Sbjct: 60 LEINNRAADALNS-SMLKDFLSQPSLGLLVRTY 91
Score = 47.3 bits (112), Expect = 1e-06
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
LY+ + LA+K+G L GD +L INNR D L+S LS L + T
Sbjct: 35 RRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNS-SMLKDFLSQPSLGLLVRTY 91
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 53.5 bits (129), Expect = 1e-08
Identities = 15/92 (16%), Positives = 37/92 (40%), Gaps = 13/92 (14%)
Query: 1126 PGELRRVHIDKSVEPLGIQIQCLDSGG------VFVSTVSEHSLASQVG-LQVGDQLLEV 1178
+ V + P G ++ GG + VS + + A+ ++ GD+L+ +
Sbjct: 9 SFQYVPVQLQGG-APWGFTLK----GGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNI 63
Query: 1179 CGINMRSATYQLAASVLRQCGNSITMLVQYSP 1210
G + + Q A +++ + ++V+
Sbjct: 64 NGTPLYG-SRQEALILIKGSFRILKLIVRRRN 94
Score = 52.0 bits (125), Expect = 4e-08
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 263
L + KI G AA + GD +++IN + G S +E + L+ S +L +
Sbjct: 35 EPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG--SRQEALILIKGSFRILKLI 89
Score = 52.0 bits (125), Expect = 4e-08
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTIT 887
L + KI G AA + GD +++IN + G S +E + L+ S +L +
Sbjct: 35 EPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG--SRQEALILIKGSFRILKLI 89
Score = 50.4 bits (121), Expect = 1e-07
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 1230 SGRGSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSL-GYSAGLRTGDRILE 1286
SG G +++ ++ + + G +L GG + + V ++ G S +RTGD ++
Sbjct: 3 SGSSGGSFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVN 62
Query: 1287 YNGTDLRAATAE 1298
NGT L + E
Sbjct: 63 INGTPLYGSRQE 74
Score = 33.1 bits (76), Expect = 0.13
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARS 811
+ D +V +N S++ L ++ S +++RRR G S
Sbjct: 55 RTGDELVNINGTPLYG-SRQEALILIKGSFRILKLIVRRRNSGPSS 99
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 55.3 bits (132), Expect = 2e-08
Identities = 31/186 (16%), Positives = 60/186 (32%), Gaps = 26/186 (13%)
Query: 1141 LGIQI----------QCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQL 1190
LG I D G+FV+ V AS++ LQ GD++++ G + + +
Sbjct: 4 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQ 62
Query: 1191 AASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGEPRFLMIETRKC--- 1247
A S+L+ N++ +++ + E + S ++ T
Sbjct: 63 AVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPTSLLI 122
Query: 1248 -----------SNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTG-DRILEYNGTDLRAA 1295
+ GGN+ S S +GL+ G D +
Sbjct: 123 SWDASYYGVSYYRITYGETGGNSPVQEFTVPYSSSTATISGLKPGVDYTITVYAYSDYYG 182
Query: 1296 TAEEAA 1301
+ +
Sbjct: 183 SHHYSP 188
Score = 47.6 bits (112), Expect = 8e-06
Identities = 27/193 (13%), Positives = 57/193 (29%), Gaps = 14/193 (7%)
Query: 74 NEALGLELVGGRD---DPFYPNDSSIYVSNIVKGSVTDGKLKKKEEVARIKKQCEDMNQE 130
+ LG + GG +PF P+D I+V+ + L+ +++ + N E
Sbjct: 1 SPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFI-NIE 59
Query: 131 KNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVTNYL 190
A+ + I + ++ +V +A T
Sbjct: 60 HGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPTS 119
Query: 191 DGLQLNNS------YDHGLTLESG---LYICKISPGSLAAKEGSLAVG-DRVLSINNRTV 240
+ + S Y G + + S A L G D +++ +
Sbjct: 120 LLISWDASYYGVSYYRITYGETGGNSPVQEFTVPYSSSTATISGLKPGVDYTITVYAYSD 179
Query: 241 DGLSSAREGMALL 253
S +++
Sbjct: 180 YYGSHHYSPISIN 192
Score = 44.9 bits (105), Expect = 6e-05
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 1250 LGISLVGG----------NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEE 1299
LG S+ GG + GI+V VQ L+ GD+I++ NG +
Sbjct: 4 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQ 62
Query: 1300 AAYELAKPADKVTVLAQYSVERYNEVKDKP 1329
A L + V ++ V + + +
Sbjct: 63 AVSLLKTFQNTVELIIVREVGNGAKQEIRV 92
Score = 43.8 bits (102), Expect = 2e-04
Identities = 13/104 (12%), Positives = 36/104 (34%), Gaps = 5/104 (4%)
Query: 830 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 889
+ G+++ ++ P A L GD+++ N + + + ++LL + + + +
Sbjct: 23 DDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHG-QAVSLLKTFQNTVELIIV 79
Query: 890 KPTSLGEHSPRVHRKSVNSSTQTMPLYVRY--GDQPPPDSYQVP 931
+ G R + + + P S +
Sbjct: 80 REVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPTSLLIS 123
Score = 40.3 bits (93), Expect = 0.002
Identities = 11/91 (12%), Positives = 33/91 (36%), Gaps = 3/91 (3%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTITTL 265
+ G+++ ++ P A L GD+++ N + + + ++LL + + + +
Sbjct: 23 DDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHG-QAVSLLKTFQNTVELIIV 79
Query: 266 KPTSLGEHSPRVHRKSVNSSTQTMPLYVRQH 296
+ G R + + +
Sbjct: 80 REVGNGAKQEIRVRVEKDGGSGGVSSVPTNL 110
Score = 35.7 bits (81), Expect = 0.063
Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 3/127 (2%)
Query: 766 KVNDCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRR-VGARSLVTTQLQLNNSYD 824
+ D I++ N N+ + +++ + ++I R GA+ + +++ +
Sbjct: 42 QPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSG 101
Query: 825 HGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVL 884
++ + L + +P SL + G I G S +E + S
Sbjct: 102 GVSSVPTNLEVVAATPTSLLISWDASYYGVSYYRITYGETGGNSPVQE--FTVPYSSSTA 159
Query: 885 TITTLKP 891
TI+ LKP
Sbjct: 160 TISGLKP 166
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 56.5 bits (137), Expect = 4e-08
Identities = 41/197 (20%), Positives = 70/197 (35%), Gaps = 46/197 (23%)
Query: 1141 LGIQIQCLDS-----------GGVFVSTVSEHSLASQVGLQVGDQLLEVCGI---NMRSA 1186
LGI+ + + G FVS V S +++ G++ GD + + G +
Sbjct: 242 LGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAEL 301
Query: 1187 TYQLAAS---------VLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGEP 1237
++A + +LR G + + V L+ S SSSA E ++ G
Sbjct: 302 RSRIATTEPGTKVKLGLLRN-GKPLEVEV--------TLDTSTSSSASAEMITPALEGAT 352
Query: 1238 RFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATA 1297
S+ + GI + V GS AGL+ D I+ N + +
Sbjct: 353 L---------SDGQLK---DGGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVN--SI 398
Query: 1298 EEAAYELAKPADKVTVL 1314
E LA + +
Sbjct: 399 AEMRKVLAAKPAIIALQ 415
Score = 40.3 bits (95), Expect = 0.004
Identities = 25/139 (17%), Positives = 54/139 (38%), Gaps = 24/139 (17%)
Query: 766 KVNDCIVRVNNLDCSNVS--KRMVLETVRSSGTSALMVIRRR--------RVGARSLVTT 815
K D I +N ++ + + + T GT + + R + + +
Sbjct: 282 KAGDIITSLNGKPLNSFAELRSRIATT--EPGTKVKLGLLRNGKPLEVEVTLDTSTSSSA 339
Query: 816 QLQLNNSYDHGLTLE--------SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGL 867
++ G TL G+ I ++ GS AA+ G L D ++ +N V+ +
Sbjct: 340 SAEMITPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSI 398
Query: 868 SSAREGMALLSDSPDVLTI 886
+ R+ +L+ P ++ +
Sbjct: 399 AEMRK---VLAAKPAIIAL 414
Score = 36.1 bits (84), Expect = 0.098
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 190 LDGLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREG 249
L+G L++ G+ I ++ GS AA+ G L D ++ +N V+ ++ R+
Sbjct: 348 LEGATLSDGQLKDGG--KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSIAEMRK- 403
Query: 250 MALLSDSPDVLTI 262
+L+ P ++ +
Sbjct: 404 --VLAAKPAIIAL 414
Score = 31.5 bits (72), Expect = 2.5
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVD 241
L ++ G ++ ++ PGS +AK G + GD + S+N + ++
Sbjct: 258 NLDVQRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLN 296
Score = 31.5 bits (72), Expect = 2.5
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVD 865
L ++ G ++ ++ PGS +AK G + GD + S+N + ++
Sbjct: 258 NLDVQRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLN 296
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 51.5 bits (123), Expect = 5e-08
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 1256 GGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA 1315
+G V + L S GL+ GD + NG DL ++ ++++
Sbjct: 33 DDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSL-- 90
Query: 1316 QYSVERYNEVKD 1327
+VER + D
Sbjct: 91 --TVERDGQQHD 100
Score = 36.1 bits (83), Expect = 0.016
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV-LTI 262
G + L G L GD +++N + + +++ ++ LT+
Sbjct: 37 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTV 92
Score = 36.1 bits (83), Expect = 0.016
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV-LTI 886
G + L G L GD +++N + + +++ ++ LT+
Sbjct: 37 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTV 92
Score = 32.2 bits (73), Expect = 0.34
Identities = 11/56 (19%), Positives = 22/56 (39%)
Query: 1152 GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQ 1207
G VS + L +GLQ GD + + G+++ +++ V+
Sbjct: 38 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVE 93
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 50.6 bits (121), Expect = 8e-08
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 1256 GGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA 1315
+G V + L S GL+ GD + NG DL ++ ++++
Sbjct: 15 DDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSL-- 72
Query: 1316 QYSVERYNEVKD 1327
+VER + D
Sbjct: 73 --TVERDGQQHD 82
Score = 35.2 bits (81), Expect = 0.022
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV-LTI 262
G + L G L GD +++N + + +++ ++ LT+
Sbjct: 19 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTV 74
Score = 35.2 bits (81), Expect = 0.022
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV-LTI 886
G + L G L GD +++N + + +++ ++ LT+
Sbjct: 19 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTV 74
Score = 30.2 bits (68), Expect = 1.1
Identities = 11/56 (19%), Positives = 22/56 (39%)
Query: 1152 GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQ 1207
G VS + L +GLQ GD + + G+++ +++ V+
Sbjct: 20 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVE 75
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 55.9 bits (135), Expect = 1e-07
Identities = 35/261 (13%), Positives = 87/261 (33%), Gaps = 20/261 (7%)
Query: 308 KELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRSGCCTQPESDD 367
+ + QA + + LR S +I R + +
Sbjct: 836 QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYH-------RTLK 888
Query: 368 AGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQC 427
A M A + + +K E + + H +K+ Q ++ K+
Sbjct: 889 AIVYLQCCYRRMMAKRELKKLKIE----ARSVERYKKLHIGLENKIMQLQRKIDEQNKEY 944
Query: 428 EDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAM 487
+ + ++ N + ++ + + + ++ E + +Q++ KE++
Sbjct: 945 KSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH--- 1001
Query: 488 AVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVR--KIKTLEME 545
+ + K + E + E ++SE + ++ E+L + + + E
Sbjct: 1002 ----QTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETM 1057
Query: 546 NKELVEDKKTLSYQIETLKRE 566
K+LVE+ K L + +
Sbjct: 1058 EKKLVEETKQLELDLNDERLR 1078
Score = 54.0 bits (130), Expect = 4e-07
Identities = 35/241 (14%), Positives = 81/241 (33%), Gaps = 9/241 (3%)
Query: 450 AAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQ 509
A +R + + + + +E + + Q+H KA L+ A +
Sbjct: 847 ALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTL-KAIVYLQCCYRRMMAKRE 905
Query: 510 EYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIAS 569
L + R +E+ + KI L+ + E ++ K+L ++ L+ ++
Sbjct: 906 LKKLKIEAR-----SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST 960
Query: 570 ALHDRDKALKECNDLRERFGEFTAAKEECQREAFHARFEYAMRMGERDSSRKERNEVEAA 629
++ E T Q E R E E+ + + ++ +
Sbjct: 961 ETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020
Query: 630 SMDLFGKCQKERMDNLEANQEIDRLRKHTDKLQAELQDQSVNYLFILTESIQEAEVSKRR 689
+ L + +++ N E + L + E+ + L T+ ++ +R
Sbjct: 1021 TEQLVSELKEQ---NTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERL 1077
Query: 690 R 690
R
Sbjct: 1078 R 1078
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 55.0 bits (131), Expect = 2e-07
Identities = 49/419 (11%), Positives = 123/419 (29%), Gaps = 49/419 (11%)
Query: 253 LSDSPDVLTITTLKPTSLGEHSPRVHRKSVNSSTQTMPLYVRQHNETVRRGDHTLKELEY 312
PD+ + + +L + +P S + + +++ + ++ +
Sbjct: 326 HDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAA--YNQRKADL 383
Query: 313 YRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRSGCCTQPESDDAGSAD 372
A +SL + + + +L + G
Sbjct: 384 VNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSR------SVIEQGGIQ 437
Query: 373 SLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQ 432
+++Q + ++ D + D+ T + K + + + ++ +
Sbjct: 438 TVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQ-----RTPSNELYK 492
Query: 433 EKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMK 492
+ + A Q + + L K + + A+ N A
Sbjct: 493 PLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAK----- 547
Query: 493 ATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVED 552
T + + + + ER+ + +++ ++ D+T + E
Sbjct: 548 -TMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALS 606
Query: 553 KKTLSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAAKEECQREAFHARFEYAMR 612
L L ++ +L ++ LK ++ EF+ K+
Sbjct: 607 VTELDRVYGGLTTKVQESLKKQEGLLKN---IQVSHQEFSKMKQS--------------- 648
Query: 613 MGERDSSRKERNEVE---AASMDLFGKCQKERMDNL-EANQEIDRLRKHTDKLQAELQD 667
++ R EV A + D F E + NL E + + L + + Q + D
Sbjct: 649 ----NNEANLREEVLKNLATAYDNF----VELVANLKEGTKFYNELTEILVRFQNKCSD 699
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A
{Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 53.1 bits (128), Expect = 5e-07
Identities = 37/189 (19%), Positives = 60/189 (31%), Gaps = 49/189 (25%)
Query: 1141 LGIQIQCLDS------------GGVFVSTVSEHSLASQVGLQVGDQLLEVCGI---NMRS 1185
+GI +Q L G VS V+ +S A GL+ GD + ++
Sbjct: 260 MGIFVQHLTPELAQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQ 319
Query: 1186 ATYQLAAS---------VLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSG- 1235
++ V R +T+ + S + +S + G
Sbjct: 320 VKTTISLLRVGSTVKIIVERD-NKPLTLSA--------VVTDIKSHEQKLQSNNPFLYGL 370
Query: 1236 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT----- 1290
R E+ GN +G+ V S G+ AG+R GD I+ N
Sbjct: 371 ALRAFEQESPP---------HGNVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDV 421
Query: 1291 -DLRAATAE 1298
L+ E
Sbjct: 422 KSLQTIAQE 430
Score = 41.5 bits (98), Expect = 0.002
Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 28/143 (19%)
Query: 766 KVNDCIVRVNNLDCSNVS--KRMVLETVRSSGTSALMVIRRR--------RVGARSLVTT 815
K D I ++N+ + + K + G++ +++ R V
Sbjct: 301 KAGDIITQINDTKITQATQVKTTISLL--RVGSTVKIIVERDNKPLTLSAVVTDIKSHEQ 358
Query: 816 QLQLNNSYDHGLTLE------------SGLYICKISPGSLAAKEGSLAVGDRVLSINNRT 863
+LQ NN + +GL L G+ + S S + G + GD ++S N +
Sbjct: 359 KLQSNNPFLYGLALRAFEQESPPHGNVIGVQVVGASENSAGWRAG-IRPGDIIISANKKP 417
Query: 864 VDGLSSAREGMALLSDSPDVLTI 886
V + S + + + L +
Sbjct: 418 VTDVKSLQ---TIAQEKKKELLV 437
Score = 40.8 bits (96), Expect = 0.004
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 1137 SVEPLGIQI-QCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVL 1195
++ + + GV V SE+S + G++ GD ++ + L +
Sbjct: 371 ALRAFEQESPPHGNVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVK-SLQT-IA 428
Query: 1196 RQCGNSITMLVQ 1207
++ + + V
Sbjct: 429 QEKKKELLVQVL 440
Score = 37.3 bits (87), Expect = 0.040
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 1258 NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 1313
+ G V V S AGL+ GD I + N T + AT + L + V +
Sbjct: 280 DFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKI 335
Score = 35.4 bits (82), Expect = 0.17
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 16/96 (16%)
Query: 174 EDAVKEINTAMAVTNYLDGLQLNNSYDHGLTLE-------SGLYICKISPGSLAAKEGSL 226
D + +L GL L E G+ + S S + G +
Sbjct: 351 TDIKSHEQKLQSNNPFLYGLALRA-----FEQESPPHGNVIGVQVVGASENSAGWRAG-I 404
Query: 227 AVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTI 262
GD ++S N + V + S + + + L +
Sbjct: 405 RPGDIIISANKKPVTDVKSLQ---TIAQEKKKELLV 437
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 51.9 bits (125), Expect = 1e-06
Identities = 38/199 (19%), Positives = 73/199 (36%), Gaps = 49/199 (24%)
Query: 1141 LGIQIQCLDS-----------GGVFVSTVSEHSLASQVGLQVGDQLLEVCGI---NMRSA 1186
LGI L+S G FVS V +S A++ G++ GD + + G + +
Sbjct: 265 LGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAAL 324
Query: 1187 TYQLAAS---------VLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGEP 1237
Q+ +LR G + + + EL+ S + ++ S+ G
Sbjct: 325 RAQVGTMPVGSKLTLGLLRD-GKQVNVNL--------ELQQSSQNQVDSSSIFNGIEGAE 375
Query: 1238 RFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATA 1297
+ + + G+ V++V++G+ GL+ GD I+ N ++
Sbjct: 376 --MSNKGKD-------------QGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVK--NI 418
Query: 1298 EEAAYELAKPADKVTVLAQ 1316
E L + + Q
Sbjct: 419 AELRKVLDSKPSVLALNIQ 437
Score = 40.8 bits (96), Expect = 0.003
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 1127 GELRRVHIDKSVEPLGIQIQCL----DSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGIN 1182
+ + +D S GI+ + GV V+ V + A+Q+GL+ GD ++
Sbjct: 355 QQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQA 414
Query: 1183 MRSATYQLAASVLRQCGNSITMLVQ 1207
+++ +L VL + + + +Q
Sbjct: 415 VKNIA-ELRK-VLDSKPSVLALNIQ 437
Score = 38.8 bits (91), Expect = 0.015
Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 21/136 (15%)
Query: 766 KVNDCIVRVNNLDCSNVS--KRMVLETVRSSGTSALMVIRRR--------RVGARSLVTT 815
K D I +N S+ + + V G+ + + R + S
Sbjct: 305 KAGDVITSLNGKPISSFAALRAQVGTM--PVGSKLTLGLLRDGKQVNVNLELQQSSQNQV 362
Query: 816 QLQLNNSYDHGLTL-----ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSA 870
+ G + + G+ + + G+ AA+ G L GD ++ N + V ++
Sbjct: 363 DSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKNIAEL 421
Query: 871 REGMALLSDSPDVLTI 886
R+ +L P VL +
Sbjct: 422 RK---VLDSKPSVLAL 434
Score = 36.5 bits (85), Expect = 0.068
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 206 ESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTI 262
+ G+ + + G+ AA+ G L GD ++ N + V ++ R+ +L P VL +
Sbjct: 382 DQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKNIAELRK---VLDSKPSVLAL 434
Score = 31.1 bits (71), Expect = 3.3
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVD 241
+ + G ++ ++ P S AAK G + GD + S+N + +
Sbjct: 281 KVDAQRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPIS 319
Score = 31.1 bits (71), Expect = 3.3
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVD 865
+ + G ++ ++ P S AAK G + GD + S+N + +
Sbjct: 281 KVDAQRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPIS 319
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 48.9 bits (116), Expect = 3e-06
Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 18/149 (12%)
Query: 1144 QIQCLDSGGVFVSTVSEHSLASQVGLQ-VGDQLLEVCGINMRSATYQLAASVLRQCGNSI 1202
+I + G V V E+S + GL+ D ++ + G + L + +
Sbjct: 9 EIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPV 68
Query: 1203 TMLVQYS-PDKYHELEGSGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGGNAVG 1261
ML+ S + E + S+ + + G S S G N
Sbjct: 69 KMLIYSSKTLELRETSVTPSNLWGGQGLLG---------------VSIRFCSFDGANENV 113
Query: 1262 IYVHSVQSGSLGYSAGLR-TGDRILEYNG 1289
+V V+S S AGLR D I+ +
Sbjct: 114 WHVLEVESNSPAALAGLRPHSDYIIGADT 142
Score = 41.2 bits (96), Expect = 0.001
Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 2/117 (1%)
Query: 1248 SNLGISLVGGNAVGIYVHSVQSGSLGYSAGLR-TGDRILEYNGTDLRAATAEEAAYELAK 1306
S+ + + GG G +V VQ S G+ AGL D I+ NG+ L A
Sbjct: 4 SSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKAN 63
Query: 1307 PADKVTVLAQYS-VERYNEVKDKPGDSFYMRALFSRTGDLGDALQLRFHKDDILYVD 1362
V +L S E P + + + L + + +L V+
Sbjct: 64 VEKPVKMLIYSSKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVE 120
Score = 40.1 bits (93), Expect = 0.003
Identities = 9/60 (15%), Positives = 24/60 (40%)
Query: 192 GLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMA 251
G+ + S + G ++ ++ S + G D ++SIN ++ + + +
Sbjct: 1 GMGSSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLL 60
Score = 39.3 bits (91), Expect = 0.004
Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 11/120 (9%)
Query: 819 LNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDG-------LSSAR 871
+ S + G ++ ++ S + G D ++SIN ++ L A
Sbjct: 4 SSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKAN 63
Query: 872 EG----MALLSDSPDVLTITTLKPTSLGEHSPRVHRKSVNSSTQTMPLYVRYGDQPPPDS 927
M + S L T++ P++L + S V + + +S
Sbjct: 64 VEKPVKMLIYSSKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNS 123
Score = 32.0 bits (72), Expect = 1.2
Identities = 12/109 (11%), Positives = 29/109 (26%), Gaps = 11/109 (10%)
Query: 769 DCIVRVNNLDCSNVSKRMVLETVRSSGTSALMVIRRRRVGARSLVTTQLQLNNS------ 822
D IV +N + + + + M+I + +
Sbjct: 39 DFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRETSVTPSNLWGGQGLLG 98
Query: 823 -----YDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDG 866
E+ ++ ++ S AA G D ++ + +
Sbjct: 99 VSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTVMNES 147
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium,
SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo
sapiens}
Length = 197
Score = 48.7 bits (117), Expect = 3e-06
Identities = 35/204 (17%), Positives = 70/204 (34%), Gaps = 49/204 (24%)
Query: 1475 RPVILVGALS---DTVTDKLLQDFPDKFVRCAP---------EI--MH---CPQAAMEKG 1517
+ ++L+GA + + LL P+KFV P E M +
Sbjct: 20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRN 79
Query: 1518 LADNLFVDYRKKGAYFEC---TSVAAVKDACDKNNAHVILDVSLAGVERLHRQHVYPIVL 1574
++ N F+++ G+Y T V +N ILD+ ++ + + P ++
Sbjct: 80 ISANEFLEF---GSYQGNMFGTKFETVHQIHKQNK-IAILDIEPQTLKIVRTAELSPFIV 135
Query: 1575 LIKFKSTKQIKE-IKEIRDGRYSSLDKVTAKAAKEMYEHGLKIECEHKHYISAVIPAGVN 1633
I E +++++ + I ++ HY + VN
Sbjct: 136 FIAPTDQGTQTEALQQLQK-----------DSE--------AIRSQYAHYFDLSL---VN 173
Query: 1634 --IAYMCTQIQTAVELEQSKTLWV 1655
+ ++Q A + S WV
Sbjct: 174 NGVDETLKKLQEAFDQACSSPQWV 197
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 45.9 bits (110), Expect = 2e-05
Identities = 32/193 (16%), Positives = 71/193 (36%), Gaps = 40/193 (20%)
Query: 1475 RPVILVGALS---DTVTDKLLQDFPDKFVRCAP---------EI--MH---CPQAAMEKG 1517
+ ++L+GA + + L+ PD+F P E + M +
Sbjct: 6 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD 65
Query: 1518 LADNLFVDYRK-KGAYFECTSVAAVKDACDKNNAHVILDVSLAGVERLHRQHVYPIVLLI 1576
+++N +++Y + A + T + ++ ++ ILDV ++ L P V+ I
Sbjct: 66 ISNNEYLEYGSHEDAMYG-TKLETIRKIHEQGL-IAILDVEPQALKVLRTAEFAPFVVFI 123
Query: 1577 KFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGLKIECEHKHYISAVIPAGVN--I 1634
+ I + ++ + + + ++ + HY I +N I
Sbjct: 124 AAPT------ITPGLN---------EDESLQRLQKESDILQRTYAHYFDLTI---INNEI 165
Query: 1635 AYMCTQIQTAVEL 1647
++ AVEL
Sbjct: 166 DETIRHLEEAVEL 178
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 46.1 bits (110), Expect = 6e-05
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 1250 LGISLVGGN-AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPA 1308
LG+ + +G + V +G +AG+ G + + + + +A A AA P
Sbjct: 231 LGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAVRSKAPG 290
Query: 1309 DKVTV 1313
V +
Sbjct: 291 ATVAL 295
Score = 37.7 bits (88), Expect = 0.024
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 1141 LGIQIQCLDSG-GVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASV-LRQC 1198
LG+Q+ G + V A+ G+ G + +V + SA L A+V +
Sbjct: 231 LGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSAD-ALVAAVRSKAP 289
Query: 1199 GNSITMLVQYSPDKYHELE---GSGSSSAENESV 1229
G ++ + Q ++ G +
Sbjct: 290 GATVALTFQDPSGGSRTVQVTLGKAEQLEHHHHH 323
Score = 35.7 bits (83), Expect = 0.11
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 12/74 (16%)
Query: 180 INTAMAVTNYLDGLQLNNSYDHG--------LTLESGLYICKISPGSLAAKEGSLAVGDR 231
++ A + D L H G I ++ G AA G + G
Sbjct: 210 VDQAKRIA---DELISTGKASHASLGVQVTNDKDTLGAKIVEVVAGGAAANAG-VPKGVV 265
Query: 232 VLSINNRTVDGLSS 245
V +++R ++ +
Sbjct: 266 VTKVDDRPINSADA 279
Score = 35.0 bits (81), Expect = 0.17
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 827 LTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSS 869
G I ++ G AA G + G V +++R ++ +
Sbjct: 238 DKDTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSADA 279
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 46.8 bits (110), Expect = 7e-05
Identities = 48/382 (12%), Positives = 110/382 (28%), Gaps = 36/382 (9%)
Query: 298 ETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDK-QRLDRELLELR 356
++ + E HQ + Q+ A AQE + L S ++ + Q++ + L
Sbjct: 404 SEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLG 463
Query: 357 SGCCTQPESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELA 416
+ + ETI Y KR N A++ L+
Sbjct: 464 A------------LTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDT 511
Query: 417 -----QEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAK 471
EE+ + E A +ER + +
Sbjct: 512 FIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTI 571
Query: 472 VQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEK---- 527
Q+ + + + R +A + ++ +++ + + +
Sbjct: 572 TPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGR 631
Query: 528 ----LSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKE-CN 582
+ L + ++ E + + K Q+E ++I AL +K
Sbjct: 632 ISIEMHGTLEDQLNHLRQYEKS----IVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTME 687
Query: 583 DLRERFGEFTAAKEECQREAFHARFEYAMRMGERDSSRKERNEVEAASMDLFGKCQKERM 642
+R + + E E + + +E+ AS + F + + M
Sbjct: 688 HIRVGWEQLLTTIARTINEV-----ENQILTRDAKGISQEQMNEFRASFNHFDRKKTGMM 742
Query: 643 DNLEANQEIDRLRKHTDKLQAE 664
D + + + + + +
Sbjct: 743 DCEDFRACLISMGYNMGEAEFA 764
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 46.2 bits (110), Expect = 1e-04
Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 5/194 (2%)
Query: 396 RKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQW 455
K+ + + + + + E E + A ++
Sbjct: 811 YKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEH 870
Query: 456 DIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIM 515
ALR + Q+ +A + Q++ +K++ K+ T + A+Q +
Sbjct: 871 AEALRIELKRQKKIAVLLQKYNRILKKL--ENWATTKSVYLGSNETGDSITAVQAKLKNL 928
Query: 516 SERDSVHKEMEKLSEDLTQAVRKIKTLEMENK--ELVEDKKT-LSYQIETLKREIASALH 572
D + +E S ++ T N EL E K T + Q +K + +
Sbjct: 929 EAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKN 988
Query: 573 DRDKALKECNDLRE 586
L+ + +
Sbjct: 989 TLLAELERLQKIED 1002
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K,
phosphoinositide-3-kinase, influenza virus, NS1; 2.30A
{Bos taurus} PDB: 2v1y_B
Length = 170
Score = 43.6 bits (102), Expect = 1e-04
Identities = 19/155 (12%), Positives = 49/155 (31%), Gaps = 5/155 (3%)
Query: 411 DKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALA 470
+ ++ V + Q + +Q+ RE + L ++ T ++ + + E +
Sbjct: 3 QDQIVKEDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIK 62
Query: 471 KVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSE 530
++Q + K + +E + + S +H+ KL +
Sbjct: 63 IFEEQGQTQEKSSKEY-----LERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQ 117
Query: 531 DLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKR 565
+L + ++ L D L +
Sbjct: 118 ELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLV 152
Score = 34.7 bits (79), Expect = 0.11
Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 2/146 (1%)
Query: 362 QPESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVA 421
Q + S +++ +Y+ EYD L + + +E E +
Sbjct: 3 QDQIVKEDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIK 62
Query: 422 RIKKQCEDMNQEKNTALR--ERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDA 479
++Q + + L R G +++ + + E E+ K++Q+
Sbjct: 63 IFEEQGQTQEKSSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQ 122
Query: 480 VKEINTAMAVRMKATKDLKRLTEERN 505
+ DL +L + R+
Sbjct: 123 ASDNREIDKRMNSLKPDLMQLRKIRD 148
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine protease,
transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 1261 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 1313
GIY SV + GD+I+ +G + ++A K DKVT+
Sbjct: 2 GIYASSVVENM-PAKGKIEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTL 53
Score = 33.4 bits (77), Expect = 0.088
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 207 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP--DVLTIT 263
+G+Y + AK + VGD+++S + + SA + + +S D +T+
Sbjct: 1 NGIYASSVVENM-PAKGK-IEVGDKIISADGKNYQ---SAEKLIDYISSKKAGDKVTLK 54
Score = 33.4 bits (77), Expect = 0.088
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 831 SGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP--DVLTIT 887
+G+Y + AK + VGD+++S + + SA + + +S D +T+
Sbjct: 1 NGIYASSVVENM-PAKGK-IEVGDKIISADGKNYQ---SAEKLIDYISSKKAGDKVTLK 54
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 43.0 bits (101), Expect = 1e-04
Identities = 21/149 (14%), Positives = 60/149 (40%)
Query: 395 LRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQ 454
L + ++L++ + +++ ++ + R +++ E + E + + Q
Sbjct: 5 LEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQ 64
Query: 455 WDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLI 514
+ ++ ++Y+E + + + ++A A K K + L +E A +Y I
Sbjct: 65 AEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAI 124
Query: 515 MSERDSVHKEMEKLSEDLTQAVRKIKTLE 543
E + ++E+L ++ L+
Sbjct: 125 SEEMKQLEDKVEELLSKNYHLENEVARLK 153
Score = 38.0 bits (88), Expect = 0.006
Identities = 28/160 (17%), Positives = 63/160 (39%), Gaps = 7/160 (4%)
Query: 497 LKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTL 556
+K+L ++ + + + E+ +L + L +A + + E ++ EL E+ KT+
Sbjct: 2 MKQLEDKVEELLSKN-------YHLENEVARLKKLLERAEERAELSEGKSAELEEELKTV 54
Query: 557 SYQIETLKREIASALHDRDKALKECNDLRERFGEFTAAKEECQREAFHARFEYAMRMGER 616
+ +++L+ + DK +E L ++ E E +R E
Sbjct: 55 TNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 114
Query: 617 DSSRKERNEVEAASMDLFGKCQKERMDNLEANQEIDRLRK 656
+ + + + L K ++ N E+ RL+K
Sbjct: 115 YAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLKK 154
Score = 35.0 bits (80), Expect = 0.080
Identities = 24/154 (15%), Positives = 59/154 (38%), Gaps = 7/154 (4%)
Query: 419 EVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHED 478
+ +++ + E++ + E LK+ A + +++ + E +E L V +
Sbjct: 1 RMKQLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKS 60
Query: 479 AVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRK 538
+ K +++K L+++ A + K ++ L ++L K
Sbjct: 61 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 120
Query: 539 IKTL-------EMENKELVEDKKTLSYQIETLKR 565
K + E + +EL+ L ++ LK+
Sbjct: 121 YKAISEEMKQLEDKVEELLSKNYHLENEVARLKK 154
Score = 32.3 bits (73), Expect = 0.67
Identities = 17/149 (11%), Positives = 57/149 (38%), Gaps = 4/149 (2%)
Query: 380 SALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALR 439
L+K +++E L+K + + K +EE+ + + + + +
Sbjct: 11 ELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQ 70
Query: 440 ERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKR 499
+ + +++ + A + ++ K+++ +D E+ ++++K+
Sbjct: 71 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQ 130
Query: 500 LTEERNAAMQEYSLIMSERDSVHKEMEKL 528
L ++ + + + V ++KL
Sbjct: 131 LEDKVEELLSK---NYHLENEVA-RLKKL 155
Score = 30.7 bits (69), Expect = 2.0
Identities = 24/155 (15%), Positives = 55/155 (35%), Gaps = 9/155 (5%)
Query: 295 QHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDREL-- 352
+ + + + L + + + LE A + + K ++L + + + L
Sbjct: 1 RMKQLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKS 60
Query: 353 LELRSGCCTQPESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDK 412
LE ++ +Q E L+ A + E + L K DDL D+
Sbjct: 61 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE-------DE 113
Query: 413 LELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQ 447
L + + I ++ + + + L + L+ +
Sbjct: 114 LYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENE 148
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein
STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 41.5 bits (98), Expect = 2e-04
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 1261 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTV 1313
G+YV SV + L GDRI +G + T+E+ + + D+V V
Sbjct: 6 GVYVMSVLPNM-PAAGRLEAGDRIAAIDGQPIN--TSEQIVSYVREKQAGDRVRV 57
Score = 32.6 bits (75), Expect = 0.20
Identities = 13/63 (20%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 203 LTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP--DVL 260
+ G+Y+ + P AA G L GDR+ +I+ + ++ ++ + ++ + + D +
Sbjct: 1 MNEAKGVYVMSVLPNMPAA--GRLEAGDRIAAIDGQPIN---TSEQIVSYVREKQAGDRV 55
Query: 261 TIT 263
+T
Sbjct: 56 RVT 58
Score = 32.6 bits (75), Expect = 0.20
Identities = 13/63 (20%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 827 LTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP--DVL 884
+ G+Y+ + P AA G L GDR+ +I+ + ++ ++ + ++ + + D +
Sbjct: 1 MNEAKGVYVMSVLPNMPAA--GRLEAGDRIAAIDGQPIN---TSEQIVSYVREKQAGDRV 55
Query: 885 TIT 887
+T
Sbjct: 56 RVT 58
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 118
Score = 41.0 bits (95), Expect = 3e-04
Identities = 21/112 (18%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 1121 SHKPHPGELRRVHIDKSVE-PLGIQIQCLDSGGVFVSTV-------SEHSLASQVGLQVG 1172
P+ L + + + E G + + + +TV S ++ + G
Sbjct: 10 DQLPYSVTL--ISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPG 67
Query: 1173 DQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSA 1224
D++LE+ G +R+ + ++Q ++ +L+++ P L+ SG SS
Sbjct: 68 DRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDPVP-QRLDQSGPSSG 118
Score = 38.3 bits (88), Expect = 0.003
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 7/102 (6%)
Query: 1223 SAENESVSGRGSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQ-------SGSLGYS 1275
S+ + V + + + G S+ +A Y +VQ S
Sbjct: 2 SSGSSGVQDQLPYSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNR 61
Query: 1276 AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQY 1317
+ GDRILE NGT +R EE + + + + +L ++
Sbjct: 62 NAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEH 103
Score = 32.9 bits (74), Expect = 0.25
Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 200 DHGLTLESGLYICKISPGSLAAKE-GSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD 258
+ + + +++ ++ ++ GDR+L IN V L E + +
Sbjct: 37 SASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVE-EVEDAIKQTSQ 95
Query: 259 VLTITTLKPTSLGEHSPRVHRKSVNSST 286
L + EH P R + +
Sbjct: 96 TLQLLI-------EHDPVPQRLDQSGPS 116
Score = 32.9 bits (74), Expect = 0.25
Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 824 DHGLTLESGLYICKISPGSLAAKE-GSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPD 882
+ + + +++ ++ ++ GDR+L IN V L E + +
Sbjct: 37 SASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVE-EVEDAIKQTSQ 95
Query: 883 VLTITTLKPTSLGEHSPRVHRKSVNSST 910
L + EH P R + +
Sbjct: 96 TLQLLI-------EHDPVPQRLDQSGPS 116
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA,
national project on structural and functional analyses;
2.61A {Homo sapiens} SCOP: a.238.1.4
Length = 305
Score = 43.5 bits (102), Expect = 4e-04
Identities = 23/186 (12%), Positives = 64/186 (34%), Gaps = 11/186 (5%)
Query: 371 ADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDM 430
L ++ + ++ + ++ + ++ + E +E R ++ E M
Sbjct: 104 IVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKM 163
Query: 431 NQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVR 490
+ + N + +QQ + + + +Y L K + +
Sbjct: 164 DADINVTKADVEKARQQAQIRHQMAE---DSKADYSSILQKFNHEQHEYYHT------HI 214
Query: 491 MKATKDLKRLTEERNAAMQEYSLIMSE-RDSVHKEMEKLSEDLTQAVRKIKTLEMENKEL 549
+ ++ + E R M E +E V + K + + +A I + +++ +
Sbjct: 215 PNIFQKIQEMEERRIVRMGESMKTYAEVDRQVIPIIGKCLDGIVKAAESIDQ-KNDSQLV 273
Query: 550 VEDKKT 555
+E K+
Sbjct: 274 IEAYKS 279
Score = 32.7 bits (74), Expect = 0.84
Identities = 27/222 (12%), Positives = 65/222 (29%), Gaps = 25/222 (11%)
Query: 478 DAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVR 537
D + + + + +ER Y+ K++ LS+
Sbjct: 14 DQFDNLEKHTQWGIDILEKYIKFVKERTEIELSYA----------KQLRNLSKKYQPKKN 63
Query: 538 KIKTLEMEN----------KELVEDKKTLSYQIETLKREIASALHD-RDKALKECNDLRE 586
+ E + E+ + E + +I L + +E
Sbjct: 64 SKEEEEYKYTSCKAFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFH 123
Query: 587 RFGEFTAAKEECQREAFHARFEYAMRMGERDSSRKERNEVEAASMDLFGKCQKERMDNLE 646
+ E C ++ ++ + E D +++ +++A +K R
Sbjct: 124 DGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQI 183
Query: 647 ANQEIDRLRK----HTDKLQAELQDQSVNYLFILTESIQEAE 684
+Q + + K E + ++ + + IQE E
Sbjct: 184 RHQMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEME 225
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 40.8 bits (96), Expect = 4e-04
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 1261 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 1313
G+ +H V GS + AGLR GD IL ++ A E YE + ++ V
Sbjct: 36 GVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA---EDVYEAVRTQSQLAV 85
Score = 34.2 bits (79), Expect = 0.078
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 802 IRRRRVGARSL-VTTQL--QLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLS 858
RR +G L ++ + +L ++ G+ I K+ GS A + G L GD +L+
Sbjct: 3 HMRRYIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAG-LRPGDVILA 61
Query: 859 INNRTVD 865
I + V
Sbjct: 62 IGEQMVQ 68
Score = 33.8 bits (78), Expect = 0.11
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 194 QLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVD 241
+L ++ G+ I K+ GS A + G L GD +L+I + V
Sbjct: 22 ELQLREPSFPDVQHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ 68
Score = 33.4 bits (77), Expect = 0.14
Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 20/84 (23%)
Query: 1141 LGIQIQCLD-----------------SGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINM 1183
+G+ + L GV + V S A + GL+ GD +L + +
Sbjct: 8 IGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMV 67
Query: 1184 RSATYQLAASVLRQCGNSITMLVQ 1207
++A + +V + + + + ++
Sbjct: 68 QNAE-DVYEAV--RTQSQLAVQIR 88
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 43.6 bits (101), Expect = 5e-04
Identities = 25/170 (14%), Positives = 57/170 (33%), Gaps = 10/170 (5%)
Query: 399 FDDLINTHSTAVDKLELAQEEVARI-KKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDI 457
T A E V+ + + + + ++ +Q
Sbjct: 72 KGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFH-----KQMMG 126
Query: 458 ALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSE 517
+E E ++ K Q+ +KE+ A A K+ K + + SL +
Sbjct: 127 GFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQ 186
Query: 518 RDSVHKEMEKLSEDLTQAVRK----IKTLEMENKELVEDKKTLSYQIETL 563
+ ++EK +D+ + K +K L+ + +E+ + + Q +
Sbjct: 187 LKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQF 236
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 43.8 bits (102), Expect = 5e-04
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 1255 VGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 1314
+ G+ V +V Y AGL GD+I+ + + + P D VT+
Sbjct: 491 YKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATEQSVKRILERY-IPGDTVTIH 549
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4
chimera; alpha-helical coiled coil, disorder, salt
links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB:
1nkn_A 3bat_A
Length = 89
Score = 39.6 bits (92), Expect = 6e-04
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 517 ERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDK 576
E K+M+K+ EDL + R K LE +N L+E K L ++ L+ ++ L
Sbjct: 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYH 74
Query: 577 ALKECNDLRERFGE 590
E L++ GE
Sbjct: 75 LENEVARLKKLVGE 88
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 40.3 bits (95), Expect = 8e-04
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 13/59 (22%)
Query: 1261 GIYVHSVQSGSLGYSAGLRTGDRILEYNGT------DLRAATAEEAAYELAKPADKVTV 1313
G+ V SVQS + L D I + + DL++A D + +
Sbjct: 58 GVIVRSVQSNM-PANGHLEKYDVITKVDDKEIASSTDLQSALYN------HSIGDTIKI 109
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 39.8 bits (93), Expect = 0.001
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 1261 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 1313
G+ + SV GS L G I NG T AA + + + +
Sbjct: 26 GVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNLTTYSAALKTISVGEVINI 77
Score = 37.5 bits (87), Expect = 0.007
Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 11/94 (11%)
Query: 185 AVTNYLDGLQLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLS 244
+ ++ N Y G+ I + PGS A L G + SIN S
Sbjct: 4 SHHHHHHSSGRENLYF-QGHQPDGVQIDSVVPGSPA--SKVLTPGLVIESINGMPT---S 57
Query: 245 SAREGMALLSDSP--DVLTITTLKPT---SLGEH 273
+ A L +V+ ITT + T G +
Sbjct: 58 NLTTYSAALKTISVGEVINITTDQGTFHLKTGRN 91
Score = 37.1 bits (86), Expect = 0.010
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP--DV 883
G+ I + PGS A L G + SIN S+ A L +V
Sbjct: 20 QGHQPDGVQIDSVVPGSPA--SKVLTPGLVIESINGMPT---SNLTTYSAALKTISVGEV 74
Query: 884 LTITTLKPT---SLGEH 897
+ ITT + T G +
Sbjct: 75 INITTDQGTFHLKTGRN 91
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 39.6 bits (93), Expect = 0.001
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 1261 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 1314
GIYV V S G++ GD I++ NG L ++ + A P + V
Sbjct: 36 GIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSELQEAVLTESPL-LLEVR 88
Score = 33.4 bits (77), Expect = 0.12
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 802 IRRRRVGARSL-VTTQL--QLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLS 858
+R +G R +T L +L S + SG+Y+ +++P S + + G + GD ++
Sbjct: 3 HMKRFIGIRMRTITPSLVDELKASNPDFPEVSSGIYVQEVAPNSPSQRGG-IQDGDIIVK 61
Query: 859 INNRTVD 865
+N R +
Sbjct: 62 VNGRPLV 68
Score = 33.0 bits (76), Expect = 0.20
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 194 QLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVD 241
+L S + SG+Y+ +++P S + + G + GD ++ +N R +
Sbjct: 22 ELKASNPDFPEVSSGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLV 68
Score = 32.3 bits (74), Expect = 0.37
Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 17/64 (26%)
Query: 1141 LGIQIQCLD-----------------SGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINM 1183
+GI+++ + S G++V V+ +S + + G+Q GD +++V G +
Sbjct: 8 IGIRMRTITPSLVDELKASNPDFPEVSSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPL 67
Query: 1184 RSAT 1187
++
Sbjct: 68 VDSS 71
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 41.8 bits (99), Expect = 0.001
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 780 SNVSKRMVLETVRSSGTSALMVIRRRRVGARSL-VTTQL--QLNNSYDHGLTLESGLYIC 836
S+ + + + + +S + +RR +G L ++ + +L ++ G+ I
Sbjct: 202 SDRLREFLHRGEKKNSSSGISGSQRRYIGVMMLTLSPSILAELQLREPSFPDVQHGVLIH 261
Query: 837 KISPGSLAAKEGSLAVGDRVLSINNRTVD 865
K+ GS A + G L GD +L+I + V
Sbjct: 262 KVILGSPAHRAG-LRPGDVILAIGEQMVQ 289
Score = 41.8 bits (99), Expect = 0.001
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 1261 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 1313
G+ +H V GS + AGLR GD IL ++ A YE + ++ V
Sbjct: 257 GVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAE---DVYEAVRTQSQLAV 306
Score = 33.8 bits (78), Expect = 0.42
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 194 QLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVD 241
+L ++ G+ I K+ GS A + G L GD +L+I + V
Sbjct: 243 ELQLREPSFPDVQHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ 289
Score = 32.2 bits (74), Expect = 1.3
Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 20/84 (23%)
Query: 1141 LGIQIQCLD-----------------SGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINM 1183
+G+ + L GV + V S A + GL+ GD +L + +
Sbjct: 229 IGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMV 288
Query: 1184 RSATYQLAASVLRQCGNSITMLVQ 1207
++A + +V + + + + ++
Sbjct: 289 QNAE-DVYEAV--RTQSQLAVQIR 309
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein
binding; NMR {Homo sapiens}
Length = 83
Score = 37.5 bits (87), Expect = 0.003
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 1329 PGDSFYMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCG 1388
P S +RAL +L D L D++ V +G W+ + ++ + G
Sbjct: 15 PRGSLKVRALKDFW-NLHDPTALNVRAGDVITVLEQHPDG---RWKGHIHESQRGTDRIG 70
Query: 1389 IIPSKYKVE 1397
P VE
Sbjct: 71 YFPPGI-VE 78
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 37.7 bits (88), Expect = 0.003
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 1261 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 1313
G+YV SV+ L GD I E +G +++ K D V +
Sbjct: 8 GVYVMSVKDDVPAADV-LHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKI 59
Score = 32.7 bits (75), Expect = 0.21
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 208 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP--DVLTIT 263
G+Y+ + AA L GD + I+ S++E + + D + I
Sbjct: 8 GVYVMSVKDDVPAAD--VLHAGDLITEIDGNAFK---SSQEFIDYIHSKKVGDTVKIN 60
Score = 32.7 bits (75), Expect = 0.21
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 832 GLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP--DVLTIT 887
G+Y+ + AA L GD + I+ S++E + + D + I
Sbjct: 8 GVYVMSVKDDVPAAD--VLHAGDLITEIDGNAFK---SSQEFIDYIHSKKVGDTVKIN 60
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 38.9 bits (90), Expect = 0.006
Identities = 21/188 (11%), Positives = 67/188 (35%), Gaps = 3/188 (1%)
Query: 383 NKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERN 442
+ ++K+E ++ + A D+L QE ++ + E + R+
Sbjct: 3 MDFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRD-- 60
Query: 443 GLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTE 502
L+ + + + K ED + + K ++L++ +
Sbjct: 61 -LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAND 119
Query: 503 ERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIET 562
+ A + + + + + + + + L + + ++L + + L ++ + L ++
Sbjct: 120 DLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAV 179
Query: 563 LKREIASA 570
+R+
Sbjct: 180 RERQQEVT 187
Score = 37.8 bits (87), Expect = 0.011
Identities = 22/158 (13%), Positives = 56/158 (35%), Gaps = 11/158 (6%)
Query: 440 ERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKR 499
E K+ + + A E E+QE +++ + E + + + LK
Sbjct: 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKY 70
Query: 500 -LTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSY 558
+ + +Y+ + + ++ + Q + ++ LE N +L K+
Sbjct: 71 EVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIM 130
Query: 559 QIETLKREIASA----------LHDRDKALKECNDLRE 586
+E ++ + A L +++ L L++
Sbjct: 131 SLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKD 168
Score = 36.6 bits (84), Expect = 0.028
Identities = 23/182 (12%), Positives = 64/182 (35%), Gaps = 5/182 (2%)
Query: 482 EINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKT 541
E + MK + + +E + + +E ++ + E+ + DL +++K
Sbjct: 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKY 70
Query: 542 -LEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAAKEECQR 600
+E ++L Q+ L+ +++ +++ K +L + + AK
Sbjct: 71 EVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIM 130
Query: 601 EAFHARFEYAMRMGERDSSRKERNEVEAASMDLFGKCQKERMDNLEANQEIDRLRKHTDK 660
+ E +E E+ + Q+ + + + QE+ + +
Sbjct: 131 SLEDFEQRLNQAIERNAFLESELDEKESLLV----SVQRLKDEARDLRQELAVRERQQEV 186
Query: 661 LQ 662
+
Sbjct: 187 TR 188
Score = 34.3 bits (78), Expect = 0.16
Identities = 31/180 (17%), Positives = 65/180 (36%), Gaps = 17/180 (9%)
Query: 496 DLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKT 555
+ E Q + E + +L +L ++ E N++L D +
Sbjct: 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEA---QLVQAEQRNRDLQADNQR 67
Query: 556 LSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAAKEECQR-----EAFHARFEYA 610
L Y++E LK ++ ++ K+ + L + + A KE+ + E + E A
Sbjct: 68 LKYEVEALKEKLEHQ---YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 124
Query: 611 MR--MGERDSSRKERNEVEAASMDLFGKCQKERMDNLEANQEIDRLRKHTDKLQAELQDQ 668
R + + + N+ + L + E + + RL+ L+ EL +
Sbjct: 125 KRATIMSLEDFEQRLNQAIERNAFL----ESELDEKESLLVSVQRLKDEARDLRQELAVR 180
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 36.9 bits (85), Expect = 0.006
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 1155 VSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQY 1208
V ++ +S+A++ + G +L V GI V + S T+ V
Sbjct: 6 VGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAP 59
Score = 35.7 bits (82), Expect = 0.014
Identities = 7/65 (10%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 1264 VHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAQYSVERYN 1323
V + + S+ A + G + +G + + +L + + +
Sbjct: 6 VGEIAANSIAAEAQIAPGTELKAVDGIETP--DWDAVRLQLVDKIGDESTTITVAPFGSD 63
Query: 1324 EVKDK 1328
+ +D
Sbjct: 64 QRRDV 68
Score = 35.3 bits (81), Expect = 0.024
Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 211 ICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV-LTIT 263
+ +I+ S+AA+ +A G + +++ + R + +T+
Sbjct: 6 VGEIAANSIAAEAQ-IAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVA 58
Score = 35.3 bits (81), Expect = 0.024
Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 835 ICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDV-LTIT 887
+ +I+ S+AA+ +A G + +++ + R + +T+
Sbjct: 6 VGEIAANSIAAEAQ-IAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVA 58
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR
adaptor; 1.91A {Homo sapiens}
Length = 237
Score = 39.4 bits (91), Expect = 0.006
Identities = 30/190 (15%), Positives = 63/190 (33%), Gaps = 12/190 (6%)
Query: 301 RRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRSGCC 360
G K+L+ + + + ++ + S D + + + L
Sbjct: 47 AEGHKLYKDLKNFLSAVKVMHESSKRVSETLQEIYSSEWDGHEELKAIVWNNDLLWEDYE 106
Query: 361 TQPESDDAGSADSLNQHY---MSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQ 417
+ + + + + K +YD+ R + + N K A+
Sbjct: 107 EKLADQAVRTMEIYVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAE 166
Query: 418 EEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRER---------NEYQEA 468
EE + + ED+NQE L + C I Q LR+ + E
Sbjct: 167 EEFNKAQTVFEDLNQELLEELPILYNSRIGCYVTIFQNISNLRDVFYREMSKLNHNLYEV 226
Query: 469 LAKVQQQHED 478
++K+++QH +
Sbjct: 227 MSKLEKQHSN 236
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 36.7 bits (85), Expect = 0.007
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 1264 VHSVQSGSLGYSAGLRTGDRILEYNGTDLR 1293
+ +VQ S AGL+ GDRI+ +G L
Sbjct: 8 LENVQPNSAASXAGLQAGDRIVXVDGQPLT 37
Score = 33.2 bits (76), Expect = 0.10
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 1155 VSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGNSITMLVQ 1207
+ V +S AS GLQ GD+++ V G + V G S+ + ++
Sbjct: 8 LENVQPNSAASXAGLQAGDRIVXVDGQPLTQWV-TFVMLVRDNPGXSLALEIE 59
Score = 32.1 bits (73), Expect = 0.23
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 211 ICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTI 262
+ + P S A+ G L GDR++ ++ + + + + L I
Sbjct: 8 LENVQPNSAASXAG-LQAGDRIVXVDGQPLTQWVTFVMLVRDNPGXSLALEI 58
Score = 32.1 bits (73), Expect = 0.23
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 835 ICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSPDVLTI 886
+ + P S A+ G L GDR++ ++ + + + + L I
Sbjct: 8 LENVQPNSAASXAG-LQAGDRIVXVDGQPLTQWVTFVMLVRDNPGXSLALEI 58
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils,
endocytosis/exocytosis, protein complex,
endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A
2rnd_A
Length = 251
Score = 39.1 bits (90), Expect = 0.007
Identities = 29/199 (14%), Positives = 65/199 (32%), Gaps = 13/199 (6%)
Query: 292 YVRQHNETVRRGDHTLKELEYYR------GQHQAAMAQ-LEAAAQESSSLRSKYSDLISD 344
V+ N+ + G K+L Y + + + L+ + R + + + +
Sbjct: 57 CVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAEN 116
Query: 345 KQRLDRELLELRSGCCTQPESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLIN 404
L + + + S + K +YD+ R ++ L
Sbjct: 117 NDLLWMDYHQKLVDQALLT----MDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQT 172
Query: 405 THSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNE 464
K+ A+EE+ + +K E+MN + L + Q L
Sbjct: 173 AKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGL--EEN 230
Query: 465 YQEALAKVQQQHEDAVKEI 483
+ + ++K+ Q D + +
Sbjct: 231 FHKEMSKLNQNLNDVLVGL 249
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 39.6 bits (93), Expect = 0.007
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 1261 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 1313
G Y+ V + + GL+ D I+ NG + +A ++ K + +
Sbjct: 255 GAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSAN---DVSDVIKRESTLNM 304
Score = 36.9 bits (86), Expect = 0.051
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 802 IRRRRVGARSL-VTTQL--QLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLS 858
+++ +G R + +T+ +L + + + SG YI ++ P + A G L D ++S
Sbjct: 222 TKKKYIGIRMMSLTSSKAKELKDRHRDFPDVISGAYIIEVIPDTPAEAGG-LKENDVIIS 280
Query: 859 INNRTVD 865
IN ++V
Sbjct: 281 INGQSVV 287
Score = 35.3 bits (82), Expect = 0.16
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 194 QLNNSYDHGLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVD 241
+L + + + SG YI ++ P + A G L D ++SIN ++V
Sbjct: 241 ELKDRHRDFPDVISGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVV 287
Score = 33.4 bits (77), Expect = 0.66
Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 20/83 (24%)
Query: 1141 LGIQIQCLD-----------------SGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINM 1183
+GI++ L G ++ V + A GL+ D ++ + G ++
Sbjct: 227 IGIRMMSLTSSKAKELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSV 286
Query: 1184 RSATYQLAASVLRQCGNSITMLV 1206
SA ++ + R +++ M+V
Sbjct: 287 VSAN-DVSDVIKR--ESTLNMVV 306
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 39.9 bits (92), Expect = 0.008
Identities = 45/342 (13%), Positives = 105/342 (30%), Gaps = 24/342 (7%)
Query: 255 DSPDVLTITTLKPTSLGEHSPRVHRKSVNSSTQTMPLYVRQHNETVRRGD-HTLKELEYY 313
D V + + + + + V + + GD ++
Sbjct: 259 DPEFVQQVADFCSYIFSNSKTKTLSGGIQVNGPRLESLVLTYVNAISSGDLPCMENAVLA 318
Query: 314 RGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRSGCCTQPESDDAGSADS 373
Q + + A +A A + K Q L + D
Sbjct: 319 LAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDH 378
Query: 374 LNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAV------DKLELAQEEVARIKKQC 427
L Q + ++ + D K+ + + + + E + +
Sbjct: 379 LFQKEL-----AAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGY 433
Query: 428 EDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAM 487
Q+ ++ ++ A L+ + +A+ + Q + KEI
Sbjct: 434 RLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVER 493
Query: 488 AVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKE-MEKLSEDLTQAVRKI-----KT 541
A K L E + Q +M +++ ++E +++L+E + ++ +T
Sbjct: 494 VKAESAQASAKMLHEMQRKNEQ----MMEQKERSYQEHLKQLTEKMENDRVQLLKEQERT 549
Query: 542 LEMENKELVED-KKTLSYQIETLKREIASALHDRDKALKECN 582
L ++ +E + K+ + +K EI L + + K C
Sbjct: 550 LALKLQEQEQLLKEGFQKESRIMKNEIQD-LQTKMRRRKACT 590
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 35.4 bits (82), Expect = 0.012
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 10/66 (15%)
Query: 1333 FYMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPS 1392
Y R + R + D L +++ V W + +G + G P
Sbjct: 7 IYARVIQKRVPNAYDKTALALEVGELVKV----TKINVSGQ--WEGECNG---KRGHFPF 57
Query: 1393 KYKVEE 1398
+ V
Sbjct: 58 TH-VRL 62
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.8 bits (87), Expect = 0.013
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 451 AIRQW----DIALRERNEYQEALAKVQQQHEDAVKEINTAMAVR---MKATKDLKRLTEE 503
+IR+W L+E + + Q+ E A K++ + ++ K R+ ++
Sbjct: 86 SIRKWREEQRKRLQELDA--ASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143
Query: 504 RNAAMQEYSLI 514
+ +I
Sbjct: 144 AFYQQPDADII 154
Score = 34.0 bits (77), Expect = 0.23
Identities = 11/77 (14%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 410 VDKLELAQEEVARIKKQCEDMN---QEKNTALRE-RNGLKQQCTAAIRQWDIALRERNEY 465
+ + + +E I+K E+ QE + A + +++ + +W+ + ++E
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWN---QRQSEQ 130
Query: 466 QEALAKVQQQHEDAVKE 482
E + + A +
Sbjct: 131 VEKNKINNRIADKAFYQ 147
Score = 34.0 bits (77), Expect = 0.24
Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 23/92 (25%)
Query: 615 ERDSSRK--ERNEVEAASMDLFGKCQKERMDNLEANQEIDRLRKHTDKLQAELQDQSVNY 672
E +S RK E +D K ++ +A ++++ + +
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQEWRE-KAKKDLE--------------EWNQRQ 127
Query: 673 LFILTESIQEAEVSKRRRDWAF-SERDKIEVI 703
+E +++ +++ R D AF + D ++I
Sbjct: 128 ----SEQVEKNKINNRIADKAFYQQPDA-DII 154
Score = 33.2 bits (75), Expect = 0.37
Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 20/87 (22%)
Query: 561 ETLK--REIASALHDRDKALKECNDLRERFGEFTAAKEECQREAFHARFEYAMRMGERDS 618
E+++ RE ++ K L+E D + ++E + +A E+ R E+
Sbjct: 85 ESIRKWRE------EQRKRLQE-LDAASK-----VMEQEWREKAKKDLEEWNQRQSEQVE 132
Query: 619 SRKERNEVEAASMDLFGKCQKERMDNL 645
K N + + ++ ++
Sbjct: 133 KNKINNRIADKAF------YQQPDADI 153
Score = 32.4 bits (73), Expect = 0.72
Identities = 11/72 (15%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 112 KKKEEVARIKKQCEDMN---QEKNTALRE-RNGLKQQCTAAIRQWDIALRERNEYQEALA 167
+ +E I+K E+ QE + A + +++ + +W+ + ++E E
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWN---QRQSEQVEKNK 135
Query: 168 KVQQQHEDAVKE 179
+ + A +
Sbjct: 136 INNRIADKAFYQ 147
Score = 31.7 bits (71), Expect = 1.2
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 148 AIRQWDIALRERNEYQEALAKVQQQH--EDAVKEIN 181
+IR+W R+R + +A +KV +Q E A K++
Sbjct: 86 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLE 121
Score = 30.1 bits (67), Expect = 4.2
Identities = 6/55 (10%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 110 KLKKKEEVARIKKQ--CEDMNQEKNTALRERNGLKQQCTAAIRQWDIA-LRERNE 161
+L++ + +++ +Q E ++ + ++ ++ R D A ++ +
Sbjct: 97 RLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
Score = 29.4 bits (65), Expect = 7.6
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 13/76 (17%)
Query: 678 ESIQEAEVSKRRRDWAFSERDKIEVID--SYHTKHAGRHKRGKELDKNGGTWPKARSGPV 735
QE E R W +R +++ +D S + R K K+L++ W + +S
Sbjct: 79 RLTQEPES---IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE----WNQRQS--- 128
Query: 736 IENGTGTILHPRRHKE 751
E ++ R +
Sbjct: 129 -EQVEKNKINNRIADK 143
Score = 29.4 bits (65), Expect = 8.5
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 14/89 (15%)
Query: 321 MAQLEAAAQESSSLRS---KYSDLISDKQRLDRELL-ELRSGCCTQPESDDAGSADSLNQ 376
+AQ + QE S+R + + + + + E R + + ++ NQ
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREK--AKKDLEE------WNQ 125
Query: 377 HYMSAL--NKYETIKDEYDALRKRFDDLI 403
+ NK + ++ D+I
Sbjct: 126 RQSEQVEKNKINNRIADKAFYQQPDADII 154
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 35.0 bits (81), Expect = 0.015
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 10/66 (15%)
Query: 1333 FYMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPS 1392
+ +AL+ D DA ++ F +++IL V + W+A A+G + GIIPS
Sbjct: 6 YKAKALYPYDADDDDAYEISFEQNEILQVSDI----EGRWWKA--RRANG---ETGIIPS 56
Query: 1393 KYKVEE 1398
Y V+
Sbjct: 57 NY-VQL 61
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 38.6 bits (89), Expect = 0.015
Identities = 50/306 (16%), Positives = 94/306 (30%), Gaps = 26/306 (8%)
Query: 371 ADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIK--KQCE 428
A+ LN +S L + E LRK + + + K E + +
Sbjct: 92 AEDLNSGPLSKL---SLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALAR 148
Query: 429 DMNQ--EKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTA 486
D Q K + + +R N Y + Q H+ + +
Sbjct: 149 DSAQAKRKYQEASKDKDRDKAKDKYVRSLWKLFAHHNRYVLGVRAAQLHHQHHHQLLLPG 208
Query: 487 MAVRMKATKDLKRLTEERNAAMQEYSLIMSE-RDSVHKEMEKLSEDLTQAVRKIKTLEME 545
+ + L+ L EE ++E E V E+ + ++ A +I+ E E
Sbjct: 209 LL------RSLQDLHEEMACILKEILQEYLEISSLVQDEVVAIHREMAAAAARIQP-EAE 261
Query: 546 NKELVEDKKTLSYQIETLKREIASALHDRDKALK---ECNDLRERFGEFTAAKEECQREA 602
+ + + + + S L + + + N+L + T +
Sbjct: 262 YQGFLRQYGSAPDVPPCVTFD-ESLLEEGEPLEPGELQLNELTVESVQHTLTSVTDELAV 320
Query: 603 FHARFEYAMRM---GERDSSRKERNEVEAASMDLFGKCQKERMDNLEANQEIDRLRKHTD 659
M +++ +E N + L GK R EA Q +
Sbjct: 321 ATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLLGK----RQVLQEALQGLQVALCSQA 376
Query: 660 KLQAEL 665
KLQA+
Sbjct: 377 KLQAQQ 382
Score = 30.9 bits (69), Expect = 4.4
Identities = 20/259 (7%), Positives = 63/259 (24%), Gaps = 22/259 (8%)
Query: 475 QHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQ 534
+ ++ + +++ +R + +EY+ + +S +
Sbjct: 9 CSPQGHGVLQQMQEAELRLLEGMRKWMAQRVKSDREYA----------GLLHHMSLQDSG 58
Query: 535 AVRK----IKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKAL-KECNDLRERFG 589
+ + E+ + LS + ++ S + L +E LR+ +
Sbjct: 59 GQSRAISPDSPISQSWAEITSQTEGLSRLLRQHAEDLNSGPLSKLSLLIRERQQLRKTYS 118
Query: 590 EFTAAKEECQREAF-------HARFEYAMRMGERDSSRKERNEVEAASMDLFGKCQKERM 642
E ++ + +++ R + + + + K +
Sbjct: 119 EQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKDKDRDKAKDKYVRSLW 178
Query: 643 DNLEANQEIDRLRKHTDKLQAELQDQSVNYLFILTESIQEAEVSKRRRDWAFSERDKIEV 702
+ + + L + + E + V
Sbjct: 179 KLFAHHNRYVLGVRAAQLHHQHHHQLLLPGLLRSLQDLHEEMACILKEILQEYLEISSLV 238
Query: 703 IDSYHTKHAGRHKRGKELD 721
D H +
Sbjct: 239 QDEVVAIHREMAAAAARIQ 257
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein,
hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1
PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A
1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 37.9 bits (89), Expect = 0.022
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 1141 LGIQIQCLDS-----------GGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSAT 1187
+GI + + G+ V+ VS A+ G+QV D ++ V SA
Sbjct: 223 IGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISAL 280
Score = 37.5 bits (88), Expect = 0.031
Identities = 11/53 (20%), Positives = 20/53 (37%)
Query: 1261 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 1313
GI V+ V +AG++ D I+ + +A +P + V
Sbjct: 245 GIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPV 297
Score = 35.2 bits (82), Expect = 0.16
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP 257
G+ G+ + ++SP AA G + V D ++S++N+ SA E M +++
Sbjct: 239 GIDQLQGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAI---SALETMDQVAEIR 290
Score = 35.2 bits (82), Expect = 0.16
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALLSDSP 881
G+ G+ + ++SP AA G + V D ++S++N+ SA E M +++
Sbjct: 239 GIDQLQGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAI---SALETMDQVAEIR 290
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 38.4 bits (88), Expect = 0.023
Identities = 38/275 (13%), Positives = 88/275 (32%), Gaps = 13/275 (4%)
Query: 266 KPTSLGEHSPRVHRKSVNSSTQTMPLYVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLE 325
+ R + + + + + L + ++ L + + + + A L
Sbjct: 300 IDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLL 359
Query: 326 AAAQESSSLRSKYSDLISDKQRLDRELLELRSGCCTQPESDDAGSADSLNQHYMSALNKY 385
A L + L + K+ L++ EL++ E+ + +A+ K
Sbjct: 360 EAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAER---------QKL 410
Query: 386 ETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLK 445
E R + + +L+ E+ R KQ E + + +
Sbjct: 411 EDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARR--KQDEAAAALLAATTPQHHHVA 468
Query: 446 QQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERN 505
++ + + LA+ D V + T + LK L ++
Sbjct: 469 ERADTDPDHDNASDAGSESGGGDLARGPDDLVDPVADRRTLAERNERLHNQLKALKQDLA 528
Query: 506 AAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIK 540
+ E + D +H+E + D + +R+I+
Sbjct: 529 RSCDETK--ETAMDKIHRENVRQGRDKYKTLREIR 561
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 36.0 bits (83), Expect = 0.025
Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 464 EYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNA------AMQEYSLIMSE 517
E ++ +A ++++ + + + A R + + + L +E+N A Q+ E
Sbjct: 10 EREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEE 69
Query: 518 R-DSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIA 568
R D + K +L + + ++++ E N EL K+ L + LKR+I
Sbjct: 70 RCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121
Score = 33.7 bits (77), Expect = 0.13
Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 39/152 (25%)
Query: 517 ERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDK 576
E S+ +E +L E L ++ + K LE + L+++K L Q++ +
Sbjct: 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQ------------ 61
Query: 577 ALKECNDLRERFGEFTAAKEEC--QREAFHARFEYAMRMGERDSSRKERNEVEAASMDLF 634
D ER + K + + + + R E + E + +L
Sbjct: 62 --DNLADAEERCDQLIKNKIQLEAKVKEMNKRLE----------------DEEEMNAELT 103
Query: 635 GKCQKERMDNLEANQEIDRLRKHTDKLQAELQ 666
K +K E L++ D L+ L
Sbjct: 104 AKKRK-------LEDECSELKRDIDDLELTLA 128
Score = 31.4 bits (71), Expect = 1.0
Identities = 27/135 (20%), Positives = 55/135 (40%), Gaps = 28/135 (20%)
Query: 411 DKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALA 470
++ +E + + + + +++ ++ + L+E+N L+ Q A L + E + L
Sbjct: 20 EEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDN----LADAEERCDQLI 75
Query: 471 KVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSE 530
K + Q E VKE+N KRL +E + + KL +
Sbjct: 76 KNKIQLEAKVKEMN-------------KRLEDEEEM-----------NAELTAKKRKLED 111
Query: 531 DLTQAVRKIKTLEME 545
+ ++ R I LE+
Sbjct: 112 ECSELKRDIDDLELT 126
Score = 29.9 bits (67), Expect = 3.2
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 112 KKKEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQ 171
+ KE + + + + +++ ++ + L+E+N L+ Q A L + E + L K +
Sbjct: 24 RLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDN----LADAEERCDQLIKNKI 79
Query: 172 QHEDAVKEIN 181
Q E VKE+N
Sbjct: 80 QLEAKVKEMN 89
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 37.8 bits (88), Expect = 0.026
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 17/97 (17%)
Query: 1211 DKYHELEGSGSSSAENESVSGRGSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSG 1270
+ + +++ S +E + G + + A + V G
Sbjct: 58 NGFSKID-----SLLDEPIPSYG-FDYTLYKVL-----------DNDTAYNALISYVVPG 100
Query: 1271 SLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKP 1307
S AGL+ G I+ NG + E +
Sbjct: 101 SPAEEAGLQRGHWIMMMNGDYITKKVESELLQGSTRQ 137
Score = 30.1 bits (68), Expect = 6.4
Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 1/64 (1%)
Query: 1141 LGIQIQCLDSGGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLRQCGN 1200
+ + +S V S A + GLQ G ++ + G + +
Sbjct: 81 YKVLDND-TAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKVESELLQGSTRQLQ 139
Query: 1201 SITM 1204
Sbjct: 140 IGVY 143
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 37.6 bits (88), Expect = 0.028
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 1258 NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 1313
G +V V GS AG++ GD I NG L + + +P KV +
Sbjct: 261 VQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKL 316
Score = 36.5 bits (85), Expect = 0.065
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 11/58 (18%)
Query: 1141 LGIQIQCLDS-----------GGVFVSTVSEHSLASQVGLQVGDQLLEVCGINMRSAT 1187
LGI+ + + G FVS V S +++ G++ GD + + G + S
Sbjct: 242 LGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFA 299
Score = 32.2 bits (74), Expect = 1.5
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 202 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALL 253
L ++ G ++ ++ PGS +AK G + GD + S+N + ++ + R +A
Sbjct: 258 NLDVQRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATT 308
Score = 32.2 bits (74), Expect = 1.5
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 826 GLTLESGLYICKISPGSLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMALL 877
L ++ G ++ ++ PGS +AK G + GD + S+N + ++ + R +A
Sbjct: 258 NLDVQRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATT 308
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 37.8 bits (88), Expect = 0.031
Identities = 19/166 (11%), Positives = 55/166 (33%), Gaps = 7/166 (4%)
Query: 383 NKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERN 442
E I + R + ++ + E +E++ ++ K + + + E
Sbjct: 152 GDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELK 211
Query: 443 GLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTE 502
K + Q +E + + + E E + +K+ +
Sbjct: 212 TYKSPGLEVLFQGP-RGSRYDEAEGRFEVINNETEQLKAEEKKI----LNQFLKIKKKRK 266
Query: 503 ERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKE 548
E + + + D++++E+ K + +L +E+++
Sbjct: 267 EL--FEKTFDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDED 310
Score = 34.3 bits (79), Expect = 0.32
Identities = 14/134 (10%), Positives = 43/134 (32%), Gaps = 15/134 (11%)
Query: 308 KELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLE-LRSGCCTQPESD 366
++E Q ++++ S + +Y +L ++L + E +++ E
Sbjct: 152 GDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELK 211
Query: 367 DAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQ 426
S ++Y+ + ++ + + L E +I Q
Sbjct: 212 TYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLK--------------AEEKKILNQ 257
Query: 427 CEDMNQEKNTALRE 440
+ +++ +
Sbjct: 258 FLKIKKKRKELFEK 271
Score = 33.1 bits (76), Expect = 0.87
Identities = 14/150 (9%), Positives = 41/150 (27%), Gaps = 12/150 (8%)
Query: 309 ELEYY-------RGQHQAAMAQLEAAAQESSSLRS--KYSDLISDKQRLDRELLELRSGC 359
+ Y + + + + L + + + E SG
Sbjct: 116 DTSYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGS 175
Query: 360 --CTQPESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQ 417
+ + + L++ ++ I E + + + + A+
Sbjct: 176 IQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSP-GLEVLFQGPRGSRYDEAE 234
Query: 418 EEVARIKKQCEDMNQEKNTALRERNGLKQQ 447
I + E + E+ L + +K++
Sbjct: 235 GRFEVINNETEQLKAEEKKILNQFLKIKKK 264
Score = 30.0 bits (68), Expect = 6.4
Identities = 9/78 (11%), Positives = 23/78 (29%), Gaps = 1/78 (1%)
Query: 114 KEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQH 173
KE++ ++ K + + + E K + Q +E + + +
Sbjct: 186 KEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGP-RGSRYDEAEGRFEVINNET 244
Query: 174 EDAVKEINTAMAVTNYLD 191
E E + +
Sbjct: 245 EQLKAEEKKILNQFLKIK 262
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle,
hypothetical protein; 2.8A {Escherichia coli}
Length = 81
Score = 34.6 bits (79), Expect = 0.031
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 525 MEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDL 584
EKL + QA+ I L+ME +EL E +LS +++ + + + + ++ N
Sbjct: 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 67
Query: 585 RER 587
+ER
Sbjct: 68 QER 70
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal
toxic shock S; 3.30A {Streptococcus pyogenes}
Length = 146
Score = 36.0 bits (82), Expect = 0.032
Identities = 20/143 (13%), Positives = 59/143 (41%), Gaps = 7/143 (4%)
Query: 438 LRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDL 497
+ +R L+++ ++A+ + + ++++ E+ K + A+
Sbjct: 2 VWDRQRLEKELEEKKEALELAIDQASRDYHRATALEKELEEKKKALELAI-------DQA 54
Query: 498 KRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLS 557
+ N +E I E++ + +L Q + + L +E +L E+K+
Sbjct: 55 SQDYNRANVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISD 114
Query: 558 YQIETLKREIASALHDRDKALKE 580
++L+R++ ++ + + K+
Sbjct: 115 ASRQSLRRDLDASREAKKQVEKD 137
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 37.6 bits (86), Expect = 0.042
Identities = 34/289 (11%), Positives = 84/289 (29%), Gaps = 20/289 (6%)
Query: 286 TQTMPLYVRQHNETVRRGDHTLKELE--YYRGQHQAAMAQLEAAAQESSSLRSKYSDLIS 343
Q + R L +L+ Y R + + +L+ + +
Sbjct: 40 KQDWEHAANDVSFATIRFHDLLSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPI 99
Query: 344 DKQRLDRELLELRSGCCTQPESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLI 403
+ L+ + + + ++ M +K + + + ++ + +
Sbjct: 100 QMSMIIYSCLKEERKILENAQRFNQAQSGNIQSTVML--DKQKELDSKVRNVKDKVMCIE 157
Query: 404 NTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERN 463
+ + LE Q+E K ++ E N + +Q + +R
Sbjct: 158 HE----IKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLM--LDNKRK 211
Query: 464 EYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHK 523
E + ++ E + V K +R L D +
Sbjct: 212 EVVHKIIELLNVTELTQNALINDELVEWK-----RRQQSACIGGPPNACL-----DQLQN 261
Query: 524 EMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALH 572
++E L Q +++K LE ++ + ++ + L S
Sbjct: 262 WFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTFSLFQ 310
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 79
Score = 33.9 bits (78), Expect = 0.048
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 9/72 (12%)
Query: 1327 DKPGDSFYMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQ 1386
+ G+ Y A+++ + +L + L + W WL + +G +
Sbjct: 9 EAEGNQVY-FAVYTFKARNPN--ELSVSANQKLKILEFKDVTGNTEW--WLAEVNG---K 60
Query: 1387 CGIIPSKYKVEE 1398
G +PS Y + +
Sbjct: 61 KGYVPSNY-IRK 71
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 36.8 bits (85), Expect = 0.048
Identities = 38/269 (14%), Positives = 88/269 (32%), Gaps = 51/269 (18%)
Query: 322 AQLEAAAQESSSLRSKYSDLISDKQRLDRELLELR---SGCCTQPESDDAGSADSLNQHY 378
++++ A + ++ L + +D E ++ ++ D +L
Sbjct: 92 QRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNL---- 147
Query: 379 MSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTAL 438
K++ ++ E A +++T D + +EE I+++
Sbjct: 148 ---RKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEE---IQQRLAQFVDH----- 196
Query: 439 RERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLK 498
LKQ L E EYQ Q V+E +
Sbjct: 197 --WKELKQLAA----ARGQRLEESLEYQ--------QFVANVEEEEAWIN---------- 232
Query: 499 RLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVE----DKK 554
+ A ++Y ++ + K+ E D T ++ + ++L++ +
Sbjct: 233 --EKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVE 290
Query: 555 TLSYQIETLKR---EIASALHDRDKALKE 580
++ +++ LK ++ A R L E
Sbjct: 291 NITAKMKGLKGKVSDLEKAAAQRKAKLDE 319
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A
{Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 33.1 bits (76), Expect = 0.072
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 10/65 (15%)
Query: 1334 YMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSK 1393
+ +A+ R D L DI+ V W + +G + G+ P
Sbjct: 3 FAKAIQKRVPCAYDKTALALEVGDIVKV----TRMNINGQ--WEGEVNG---RKGLFPFT 53
Query: 1394 YKVEE 1398
+ V+
Sbjct: 54 H-VKI 57
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 32.5 bits (75), Expect = 0.081
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query: 1334 YMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSK 1393
Y+RALF G+ D L F K DIL + + W W +A+ + G+IP
Sbjct: 3 YVRALFDFNGN--DEEDLPFKKGDILRI----RDKPEEQW--W--NAEDSEGKRGMIPVP 52
Query: 1394 YKVEE 1398
Y VE+
Sbjct: 53 Y-VEK 56
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A
{Drosophila melanogaster} SCOP: a.238.1.1
Length = 244
Score = 36.0 bits (82), Expect = 0.084
Identities = 28/200 (14%), Positives = 58/200 (29%), Gaps = 7/200 (3%)
Query: 292 YVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRE 351
++ N + KE Y +AA A + + Q
Sbjct: 42 HLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWSGYDALQAQTGA 101
Query: 352 LLELRSGCCTQPESDDAGSADSLNQHY---MSALNKYETIKDEYDALRKRFDDLINTHST 408
L + + ++ + + K +YD R F +L +
Sbjct: 102 SESLWADFAHKLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANK 161
Query: 409 AVD--KLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRER--NE 464
D KL +E++ ++ E +N E + L + Q A + NE
Sbjct: 162 RKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNE 221
Query: 465 YQEALAKVQQQHEDAVKEIN 484
+ ++++ + E
Sbjct: 222 TAKIYSELEAIVDKLATESQ 241
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding,
cytoplasm, nucleotide-binding, nucleus, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 72
Score = 32.7 bits (75), Expect = 0.098
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 1336 RALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYK 1395
L+ + L F D+ +V W A L+D G G +P Y
Sbjct: 14 VGLWDFKSRTDEELS--FRAGDVFHV----ARKEEQWWWATLLDEAGGAVAQGYVPHNY- 66
Query: 1396 VEEE 1399
+ E
Sbjct: 67 LAER 70
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor,
phosphoprotein, UBL conjugation, DNA-binding,
polymorphism; HET: DNA; 3.30A {Homo sapiens}
Length = 209
Score = 35.1 bits (79), Expect = 0.13
Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 13/166 (7%)
Query: 435 NTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKAT 494
+ +L R + + + L + ++++ + + +K
Sbjct: 34 SGSLVGRENELSAGLSKRKHRNDHLTSTTSSPGVIVPESSENKNLGGVTQESFDLMIKEN 93
Query: 495 ---KDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVE 551
+ K + E+R A+ E KE EKL +++ Q +I L+ ENKEL E
Sbjct: 94 PSSQYWKEVAEKRRKALYE----------ALKENEKLHKEIEQKDNEIARLKKENKELAE 143
Query: 552 DKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAAKEE 597
+ + Y E ++R L + + + D E E + ++
Sbjct: 144 VAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEETVEDSLVEDS 189
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine
exchange factor, coiled-coil, endocytosis/exocytosis
complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Length = 154
Score = 34.4 bits (78), Expect = 0.13
Identities = 22/119 (18%), Positives = 48/119 (40%), Gaps = 8/119 (6%)
Query: 459 LRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSER 518
L + + + + + ++ NT ++KRL E+ + + E
Sbjct: 22 LNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEA 81
Query: 519 DSVHKEMEKLSEDLTQ--------AVRKIKTLEMENKELVEDKKTLSYQIETLKREIAS 569
D ++KE+E L+ L A ++ +E+ NK L E + ++TL ++ +
Sbjct: 82 DKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKN 140
Score = 29.0 bits (64), Expect = 8.5
Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 23/143 (16%)
Query: 528 LSEDLTQAVRKIKTLEMENKEL---VEDKKTLSYQIETLKREIASALHDRDKALKECNDL 584
LS L ++V K LE + + + +K LK + + + E L
Sbjct: 4 LSTQLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRL 63
Query: 585 RERFGEFTAAKEECQREAFHARFEYAMRMGERDSSRKERNEVEAASMDLFGKCQKERMDN 644
RE + + + + EA K EVE + LF +
Sbjct: 64 REDIAKENELRTKAEEEA-----------------DKLNKEVEDLTASLFDEANNM---V 103
Query: 645 LEANQEIDRLRKHTDKLQAELQD 667
+A +E + +L +L++
Sbjct: 104 ADARKEKYAIEILNKRLTEQLRE 126
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids,
protein-protein recognition, proline-rich motifs, signal
transduction; 2.50A {Mus musculus} SCOP: b.34.2.1
Length = 65
Score = 31.8 bits (73), Expect = 0.18
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 1330 GDSFYMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGI 1389
G + Y+RALF G+ D L F K DIL + + W W +A+ + G+
Sbjct: 1 GSAEYVRALFDFNGN--DEEDLPFKKGDILRI----RDKPEEQW--W--NAEDSEGKRGM 50
Query: 1390 IPSKYKVEE 1398
IP Y VE+
Sbjct: 51 IPVPY-VEK 58
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 34.9 bits (80), Expect = 0.20
Identities = 29/203 (14%), Positives = 60/203 (29%), Gaps = 28/203 (13%)
Query: 390 DEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCT 449
D LR +F D + + QE V + E + ++
Sbjct: 143 DHVTLLRDKFRDFAR------ETGAIGQERVDNVNAFIERLIDAGHSE-----------A 185
Query: 450 AAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQ 509
A I +W L E L + Q A +++ + L + E+ +
Sbjct: 186 ATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFY---TGAEILGLIDEKHRELPE 242
Query: 510 EYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVE-----DKKTLSYQIETLK 564
+ L S +S H+ D+ +++ + L + + + + +
Sbjct: 243 DVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVS 302
Query: 565 R---EIASALHDRDKALKECNDL 584
+ A R L + D
Sbjct: 303 AAWQALLDACAGRRTQLVDTADK 325
Score = 33.4 bits (76), Expect = 0.61
Identities = 32/229 (13%), Positives = 73/229 (31%), Gaps = 14/229 (6%)
Query: 467 EALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEME 526
E + ++H + + + + L + ++ I+ + V K
Sbjct: 37 EGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQ---IIRLQGQVDKHYA 93
Query: 527 KLSEDLTQAVRKIKTLEMENK-ELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLR 585
L + + RK K M + +L + L I + +S + + LR
Sbjct: 94 GLKDVAEE--RKRKLENMYHLFQLKRETDDLEQWISEKELVASS--PEMGQDFDHVTLLR 149
Query: 586 ERFGEFTAAKEECQREAFHARFEYAMRMGERDSS-----RKERNEVEAASMDLFGKCQKE 640
++F +F +E + R+ + S + ++ + DL
Sbjct: 150 DKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELID-T 208
Query: 641 RMDNLEANQEIDRLRKHTDKLQAELQDQSVNYLFILTESIQEAEVSKRR 689
RM L A+ ++ R ++ + ++ + AE R
Sbjct: 209 RMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRV 257
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 32.5 bits (74), Expect = 0.21
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 10/70 (14%)
Query: 1329 PGDSFYMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCG 1388
+ +A+ R D L DI+ V W + +G + G
Sbjct: 13 QNGPVFAKAIQKRVPCAYDKTALALEVGDIVKV----TRMNINGQ--WEGEVNG---RKG 63
Query: 1389 IIPSKYKVEE 1398
+ P + V+
Sbjct: 64 LFPFTH-VKI 72
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 31.4 bits (72), Expect = 0.22
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 1336 RALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLV-DADGFRQQCGIIPSKY 1394
A + G G +L K D++Y+ +G W L DG ++ G +P+ Y
Sbjct: 4 EAAYDFPGS-GSPSELPLKKGDVIYITREEPSG----W--SLGKLLDGSKE--GWVPTAY 54
Query: 1395 KVEE 1398
++
Sbjct: 55 -MKP 57
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 34.4 bits (78), Expect = 0.26
Identities = 29/210 (13%), Positives = 58/210 (27%), Gaps = 39/210 (18%)
Query: 477 EDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYS------------------------ 512
K + K DL++L +ER + Y+
Sbjct: 7 PGNYKRTTKRIEDGYKLCNDLQQLIQERADIEKGYAKSLRTWSKKWGELIEKGPEYGTTE 66
Query: 513 ----LIMSERDSVHKEMEKLSEDLTQAVRK-IKTLEMENKELVEDKKTLSYQIETLKREI 567
+++E + + K+ ++L V IKT + EN + +E
Sbjct: 67 AAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLED---LF 123
Query: 568 ASALHDRDKALKECNDLRERFGEFTAAKEECQREAFHARFEYAMRMGERDSSRKERNEVE 627
A K L + + + + A + + S + ++
Sbjct: 124 KKAQKPWAKLLAKVEKAKADY-------HSACKTERSATNQERNANADSSLSPDQVKKMH 176
Query: 628 AASMDLFGKCQKERMDNLEANQEIDRLRKH 657
+ QK R +A EI +
Sbjct: 177 DRVQKTKDQVQKCREKYEQAIAEITKYNSV 206
Score = 34.4 bits (78), Expect = 0.27
Identities = 34/261 (13%), Positives = 78/261 (29%), Gaps = 45/261 (17%)
Query: 467 EALAKVQQQHEDAVKEINTAMAVRMKATKD----LKRLT----------EERNAAMQEYS 512
+ K + ++ + R K L+ + E +
Sbjct: 11 KRTTKRIEDGYKLCNDLQQLIQERADIEKGYAKSLRTWSKKWGELIEKGPEYGTTEAAWK 70
Query: 513 LIMSERDSVHKEMEKLSEDLTQAVRK-IKTLEMENKELV----EDKKTLSYQIETLKREI 567
+++E + + K+ ++L V IKT + EN +++K L + ++
Sbjct: 71 GVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPW 130
Query: 568 ASALHDRDKALKE----CNDLRERFGEFTAAK-----------------EECQREAFHAR 606
A L +KA + C R + A ++ + + R
Sbjct: 131 AKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCR 190
Query: 607 FEYAMRMGERDSSRKERNEVEAASMDLFGKCQKERMDNLEANQEIDRLRKHTDKLQAELQ 666
+Y + E E + + +K R+ + + + D + +
Sbjct: 191 EKYEQAIAEITKYNSVYIEDMTSVFEKCQTFEKTRLQFF--KEILFNVHSCLDLTKVQSL 248
Query: 667 DQSVNYLFILTESIQEAEVSK 687
Q + +I A+ K
Sbjct: 249 PQIYE---EFSHTINNADQQK 266
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA
binding protein, origin recognition CO DNA replication;
HET: MES; 2.50A {Homo sapiens}
Length = 95
Score = 32.3 bits (73), Expect = 0.29
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 447 QCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNA 506
C A+ A + Y+ +L + QQ D + + T+ A+ + A K LK L ++N
Sbjct: 14 SCIEAVNM---ASKILKSYESSLPQTQQVDLDLSRPLFTSAAL-LSACKILK-LKVDKNK 68
Query: 507 AMQEYSLIMSERDSVHKEMEKLSEDL 532
+ + + D + K++EK+ + +
Sbjct: 69 MVATSGVKKAIFDRLCKQLEKIGQQV 94
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator
protein R and maltose...; novel fold for DNA binding;
HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28
c.94.1.1
Length = 487
Score = 34.4 bits (79), Expect = 0.30
Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 15/129 (11%)
Query: 466 QEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEE---------RNAAMQEYSLIMS 516
EALA Q + + AT +K+ + + + L
Sbjct: 358 DEALAAAQTNAAAEFMSKINDINDLVNATFQVKKFFRDTKKKFNLNYEEIYILNHILRSE 417
Query: 517 ERDSVHKEMEKLSE----DLTQAVRKIKTLEMENKE--LVEDKKTLSYQIETLKREIASA 570
+ KE+ K SE LT+A++K+K L++ +K+ L +++ + Y +T K I
Sbjct: 418 SNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKL 477
Query: 571 LHDRDKALK 579
+ + ++ +K
Sbjct: 478 ISELEEYIK 486
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 34.2 bits (79), Expect = 0.30
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 11/64 (17%)
Query: 1261 GIYVHSVQSGSLGYSAGLR-----------TGDRILEYNGTDLRAATAEEAAYELAKPAD 1309
G+ V AGL+ GD I NGT + + + K D
Sbjct: 252 GVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLYRILDQCKVGD 311
Query: 1310 KVTV 1313
+VTV
Sbjct: 312 EVTV 315
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 34.5 bits (77), Expect = 0.33
Identities = 28/237 (11%), Positives = 74/237 (31%), Gaps = 5/237 (2%)
Query: 313 YRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRSGCCTQPESDDAGSAD 372
Y+ + A +L + ++ ++ Y ++ + L + + +D +
Sbjct: 7 YQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAI-KKRNADAKADYE 65
Query: 373 SLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQ 432
+ Y + L KY+ +Y K ++D + A+ +LE + E + +
Sbjct: 66 AKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAELEKHKNEDGNLTEPSAQNLV 125
Query: 433 EKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMK 492
E N T A+ + + AK Q+ T +
Sbjct: 126 YDL----EPNANLSLTTDGKFLKASAVDDAFSKSTSKAKYDQKILQLDDLDITNLEQSND 181
Query: 493 ATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKEL 549
++ + A ++ + + + + + T ++ K++
Sbjct: 182 VASSMELYGNFGDKAGWSTTVSNNSQVKWGSVLLERGQSATATYTNLQNSYYNGKKI 238
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine
protease, serine- lysine catalytic DYAD, PDZ domain,
photosynthesis; 1.80A {Scenedesmus obliquus} SCOP:
b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 34.2 bits (79), Expect = 0.34
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 1250 LGI--SLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAA 1301
+G+ + GG+ + V + G AG R GD I+ +GT ++ + + +
Sbjct: 87 VGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVS 140
Score = 29.9 bits (68), Expect = 7.1
Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 1141 LGIQIQCLDSGGVFVSTVS--EHSLASQVGLQVGDQLLEVCGINMRSATYQLAASVLR 1196
+G++I G V ++ A + G + GD ++ V G ++ + + +L+
Sbjct: 87 VGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQ 144
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 34.3 bits (79), Expect = 0.34
Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 6/119 (5%)
Query: 393 DALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAI 452
+ KRF D VD+L A E R + + +++N+ KN + ++
Sbjct: 21 ETQEKRFKDP-----GLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVG 75
Query: 453 RQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKAT-KDLKRLTEERNAAMQE 510
+ + + +K++ + + + +L ER ++E
Sbjct: 76 DDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLRE 134
Score = 30.1 bits (68), Expect = 7.1
Identities = 11/81 (13%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 460 RERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSER- 518
+ +N + + + ++ E + + V L + + +++ L++ E
Sbjct: 55 KLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAI 114
Query: 519 DSVHKEMEKLSEDLTQAVRKI 539
E KL + + +R+I
Sbjct: 115 LKCDAERIKLEAERFENLREI 135
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes,
curvature membrane, structural genomics consortium;
1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Length = 243
Score = 34.0 bits (77), Expect = 0.34
Identities = 27/199 (13%), Positives = 61/199 (30%), Gaps = 12/199 (6%)
Query: 292 YVRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRE 351
YV+ G +EL Y + + + D + + +
Sbjct: 43 YVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHEVYEPDWYGREDVKMVGEK 102
Query: 352 LLELRSGCCTQPESDDAGSADSLNQHYM---SALNKYETIKDEYDALRKRFDDLINTHST 408
L + + D+ + + + K +YD+ R + L ++
Sbjct: 103 CDVLWEDFHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRK 162
Query: 409 AVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRER------ 462
++ A+EE + +K E+ N + L + + +L +
Sbjct: 163 DESRISKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEIA 222
Query: 463 ---NEYQEALAKVQQQHED 478
++ E + K+ QH D
Sbjct: 223 VLCHKLYEVMTKLGDQHAD 241
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 34.1 bits (77), Expect = 0.41
Identities = 26/192 (13%), Positives = 62/192 (32%), Gaps = 16/192 (8%)
Query: 382 LNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRER 441
L+K + + + ++ + + + + LE Q+E K ++ E N +
Sbjct: 1 LDKQKELDSKVRNVKDKVMCIEH----EIKSLEDLQDEYDFKCKTLQNREHETNGVAKSD 56
Query: 442 NGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLT 501
KQ+ + + + +R E + ++ E + V K +
Sbjct: 57 --QKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQS---- 110
Query: 502 EERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIE 561
L D + ++E L Q +++K LE ++ + ++ +
Sbjct: 111 -ACIGGPPNACL-----DQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQ 164
Query: 562 TLKREIASALHD 573
L S
Sbjct: 165 VLWDRTFSLFQQ 176
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic
vesicle, protein transport, transport, vacuole; 2.80A
{Saccharomyces cerevisiae}
Length = 152
Score = 32.9 bits (74), Expect = 0.41
Identities = 12/112 (10%), Positives = 38/112 (33%), Gaps = 2/112 (1%)
Query: 440 ERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKR 499
+ + + + + NE + + + + + + K+LK
Sbjct: 22 QTDSMDDLLIRRLTDRNDKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAIL--QKELKS 79
Query: 500 LTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVE 551
+E + +L + ++ + + + +K+ L+ E+ +LV
Sbjct: 80 KEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil,
endocytosis/exocytosis complex; 3.00A {Saccharomyces
cerevisiae} SCOP: h.1.33.1
Length = 135
Score = 32.1 bits (72), Expect = 0.59
Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 8/119 (6%)
Query: 459 LRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSER 518
L + + + + + ++ NT ++KRL E+ + + E
Sbjct: 10 LNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEA 69
Query: 519 DSVHKEMEKLSEDLTQ--------AVRKIKTLEMENKELVEDKKTLSYQIETLKREIAS 569
D ++KE+E L+ L A + +E+ NK L E + ++TL ++ +
Sbjct: 70 DKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKN 128
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex,
signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP:
a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Length = 224
Score = 32.8 bits (74), Expect = 0.65
Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 4/121 (3%)
Query: 316 QHQAAMAQ-LEAAAQESSSLRSKYSDLISDKQRLDRELLELRSGCCTQPESDDAGSADSL 374
Q Q A+ +Q+S L+ ++ ++ Q+L + E G S
Sbjct: 42 QTQHALGDAFADLSQKSPELQEEFGYN-AETQKLLCKNGETLLGAVNFFVSSINTLVTKT 100
Query: 375 NQHYMSALNKYETIKDEYDALRKRFDDLINTHSTA--VDKLELAQEEVARIKKQCEDMNQ 432
+ + + +YE + EYDA R ++L A +LE AQ + + E +
Sbjct: 101 MEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRG 160
Query: 433 E 433
+
Sbjct: 161 D 161
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 29.8 bits (68), Expect = 0.74
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 1334 YMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSK 1393
RAL++ D +L F + DI+Y+ + +W W + G + G+IPS
Sbjct: 5 VFRALYTFEPRTPD--ELYFEEGDIIYI----TDMSDTNW--WKGTSKG---RTGLIPSN 53
Query: 1394 YKVEEE 1399
Y V E+
Sbjct: 54 Y-VAEQ 58
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus
norvegicus}
Length = 96
Score = 30.7 bits (69), Expect = 0.92
Identities = 13/96 (13%), Positives = 31/96 (32%)
Query: 443 GLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTE 502
G R+ E + L V++ + + + A + ++ +
Sbjct: 1 GPGSDSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQR 60
Query: 503 ERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRK 538
E + ++ + E SV +M L + +K
Sbjct: 61 EYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKKK 96
Score = 28.0 bits (62), Expect = 9.4
Identities = 8/67 (11%), Positives = 28/67 (41%)
Query: 411 DKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALA 470
+L+ E R+ ++ ED+ + + ++ + ++ RE +E++
Sbjct: 11 RELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQL 70
Query: 471 KVQQQHE 477
++ + +
Sbjct: 71 ELDDELK 77
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 32.6 bits (74), Expect = 0.96
Identities = 26/190 (13%), Positives = 68/190 (35%), Gaps = 12/190 (6%)
Query: 415 LAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQW-DIALRERNEYQEALAKVQ 473
E+ + + + + R+ + Q+ + D + + +A+ +
Sbjct: 29 AGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADELINSGHSDAATIAEWK 88
Query: 474 QQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSE-RDSVHKEMEKLSEDL 532
+A ++ + R + L + + ++ E + + +KL E+L
Sbjct: 89 DGLNEAWADLLELIDTRTQ------IL--AASYELHKFYHDAKEIFGRIQDKHKKLPEEL 140
Query: 533 TQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGEFT 592
+ ++TL+ + D + L Q+ L +E A+ L + +D+++R E
Sbjct: 141 GRDQNTVETLQRMHTTFEHDIQALGTQVRQL-QEDAARLQAAYAG-DKADDIQKRENEVL 198
Query: 593 AAKEECQREA 602
A +
Sbjct: 199 EAWKSLLDAC 208
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 33.3 bits (76), Expect = 0.98
Identities = 8/65 (12%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 377 HYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNT 436
+++ L + + + + ++KL + +V + K + T
Sbjct: 1847 YFIDGLRALVKLVTAK---YQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLT 1903
Query: 437 ALRER 441
+ER
Sbjct: 1904 FEKER 1908
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 33.1 bits (75), Expect = 0.98
Identities = 70/522 (13%), Positives = 138/522 (26%), Gaps = 85/522 (16%)
Query: 129 QEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQ----QHEDAVKEINTAM 184
Q L + +GL Q AI + Q L + Q V +
Sbjct: 582 QRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDG 641
Query: 185 AVTNYLDGLQLNNSYDHGLTLES----GLYICKISPGSLAAKEGSLAVGDRVLSINNRTV 240
+L L + +L + L V + + V
Sbjct: 642 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQV 701
Query: 241 DGLSSAREGMALLSDSPDVLTITT----LKPTSLGEHSPRVHRKSVNSSTQTMPLYVRQH 296
++S G L +L + L P + +
Sbjct: 702 VAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN-------------------- 741
Query: 297 NETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQ---RLDRELL 353
+ LE Q + L A + + + I KQ + R L
Sbjct: 742 -------GGGKQALETV----QRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLP 790
Query: 354 ELRSGCCTQPESDDAGSADSLNQHYMSALNKYET---IKDEYDALRKRFDDLINTHSTAV 410
L A + N AL + + + L + I ++
Sbjct: 791 VLCQDHGLTLAQ---VVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGK 847
Query: 411 DKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDI---ALRERNEYQE 467
LE Q + + Q + ++ A+ G KQ R + +
Sbjct: 848 QALETVQRLLP-VLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVV 906
Query: 468 ALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEK 527
A+A + A++ + + V + LT ++ A ++ + +E
Sbjct: 907 AIASNGGK--QALETVQRLLPVLCQDH----GLTPDQVVA-------IASNSGGKQALET 953
Query: 528 LSEDLTQAVRKIKTLEME------NKELVEDKKTLSYQIETLKREIASALHDRDKALKEC 581
+ + L + + L + + +++ Q+ +A+ +D AL C
Sbjct: 954 V-QRLLPVLCQDHGLTPNQVVAIASNGGKQALESIVAQLSRPDPALAALTNDHLVAL-AC 1011
Query: 582 NDLRERFGEFTAAKEECQREAFHARFEYAMRMGERDSSRKER 623
R + ++ E R+ R R
Sbjct: 1012 LGGRPA--------MDAVKKGLPHAPELIRRVNRRIGERTSH 1045
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 32.6 bits (74), Expect = 1.0
Identities = 37/270 (13%), Positives = 91/270 (33%), Gaps = 38/270 (14%)
Query: 379 MSALNKY----ETIKDEYDALRK---RFDDLINTHSTAVDKLELAQEEVARIKKQCEDMN 431
++ +Y + ++Y+ + R DLI + +LA + ++
Sbjct: 22 QCSVAEYPEAITYLLEQYNRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDL 81
Query: 432 QEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRM 491
+ E ++A E A+++ Q+ I
Sbjct: 82 DDDEDEDEEDGDDDSADDDNSIDPELAR-------EKFAELRAQYVVTRDTIKAKGRSHA 134
Query: 492 KATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVE 551
A +++ +L+E +++ L V K+ + L + + +++T E +L
Sbjct: 135 TAQEEILKLSEV----FKQFRL-------VPKQFDYLVNSMRVMMDRVRTQERLIMKLCV 183
Query: 552 DKKTLSYQ--------IETLKREIASALHDRDKALKECNDLRERFGEFTAAKEECQREAF 603
++ + + ET +A+ ++ +D+ E ++ + E
Sbjct: 184 EQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETG 243
Query: 604 HARFEY-----AMRMGERDSSRKERNEVEA 628
+ M +GE + R ++ VEA
Sbjct: 244 LTIEQVKDINRRMSIGEAKARRAKKEMVEA 273
>1s94_A S-syntaxin; three helix bundle, structural plasticity,
endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP:
a.47.2.1
Length = 180
Score = 31.6 bits (71), Expect = 1.2
Identities = 19/148 (12%), Positives = 46/148 (31%), Gaps = 15/148 (10%)
Query: 349 DRELLELRSGCCTQPESDDAGSADSLNQHYMSA-LNKYETIKDEYDALRKRFDDLINTHS 407
DR L L++ + + ++ +M + E I+ D + D + HS
Sbjct: 9 DR-LAALKAAVSDEEDVEEVAVQVDSGGGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHS 67
Query: 408 TAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTA--AIRQWDIALRERNEY 465
+ + + +++ D+ + N + ++ + LR R
Sbjct: 68 DILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRKTQ 127
Query: 466 QEALAK-----------VQQQHEDAVKE 482
+++ Q + D K
Sbjct: 128 YSTISRKFVEVMSDYNTTQIDYRDRCKA 155
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
mimicry, translation; 1.81A {Escherichia coli} SCOP:
e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 32.6 bits (75), Expect = 1.2
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 15/102 (14%)
Query: 321 MAQLEAAAQESSSLRSKYSDL--ISDKQRLDRELLELRSGCCTQPES-DDAGSADSLNQH 377
M ++ L + L D L E+ + QP+ ++ A Q
Sbjct: 1 MFEINPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAEL-EQPDVWNEPERA----QA 55
Query: 378 YMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEE 419
+ E + D D +++ +D+ LELA E
Sbjct: 56 LGKERSSLEAVVDTLDQMKQGLEDVS-------GLLELAVEA 90
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil,
contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1
a.7.1.1
Length = 250
Score = 32.0 bits (72), Expect = 1.2
Identities = 27/191 (14%), Positives = 63/191 (32%), Gaps = 15/191 (7%)
Query: 402 LINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRE 461
L+ H L Q+ V +I +++N+ + +C QWD
Sbjct: 53 LLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVN---VNDRCQKICDQWDRLGTL 109
Query: 462 RNEYQEALAKVQQQHE----------DAVKEINTAMAVRMK--ATKDLKRLTEERNAAMQ 509
+ +EAL ++++ E N M M+ + EE + +
Sbjct: 110 TQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLIT 169
Query: 510 EYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIAS 569
+ + E + + + + I++ + ++ T ++
Sbjct: 170 AHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQ 229
Query: 570 ALHDRDKALKE 580
+ RD++L+E
Sbjct: 230 LVPIRDQSLQE 240
Score = 30.0 bits (67), Expect = 5.1
Identities = 20/132 (15%), Positives = 44/132 (33%), Gaps = 3/132 (2%)
Query: 472 VQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSED 531
+ + DA +N L LT++R A++ ++ D +H E K +
Sbjct: 82 NELDYHDA-VNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAP 140
Query: 532 LTQAVRKIKTL--EMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFG 589
+ +M +E+ ++L E K + A +R + N++ +
Sbjct: 141 FNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQ 200
Query: 590 EFTAAKEECQRE 601
+
Sbjct: 201 SYNIRISSSNPY 212
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 32.0 bits (72), Expect = 1.3
Identities = 20/168 (11%), Positives = 57/168 (33%), Gaps = 13/168 (7%)
Query: 304 DHTLKELEYYRGQHQAAMAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELRSGCCTQP 363
D + LE + + + + + + +L +K L ++ +
Sbjct: 17 DKEIDSLEPLIREKRKDLDKAL---NDKEAKNKAILNLEEEKLALKLQVSKNEQ------ 67
Query: 364 ESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARI 423
++ +++ ++ + E +L D + A ++E Q E+ R
Sbjct: 68 ---TLQDTNAKIASIQKKMSEIKSER-ELRSLNIEEDIAKERSNQANREIENLQNEIKRK 123
Query: 424 KKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAK 471
++ ED+ +E + L+ ++ + + +E L +
Sbjct: 124 SEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVE 171
Score = 31.2 bits (70), Expect = 2.3
Identities = 29/194 (14%), Positives = 65/194 (33%), Gaps = 22/194 (11%)
Query: 346 QRLDRELLELRSGCCTQPESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINT 405
LD+E+ L + ALN E L + L
Sbjct: 14 SHLDKEIDSLEP------------LIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQ 61
Query: 406 HSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEY 465
S L+ ++A I+K+ + + RE L + A + R E
Sbjct: 62 VSKNEQTLQDTNAKIASIQKK-----MSEIKSERELRSLNIEEDIAKER--SNQANR-EI 113
Query: 466 QEALAKVQQQHEDAVKEINTAMAVRMKATKDLK-RLTEERNAAMQEYSLIMSERDSVHKE 524
+ +++++ E +++ M K +L+ + E + +I +++ + ++
Sbjct: 114 ENLQNEIKRKSEK-QEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEK 172
Query: 525 MEKLSEDLTQAVRK 538
E + +R+
Sbjct: 173 TEPKIYSFYERIRR 186
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 29.7 bits (67), Expect = 1.3
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 10/63 (15%)
Query: 1336 RALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYK 1395
R T D L+ K DI+ + + P W+ + + G Y
Sbjct: 13 RVHTDFTPSPYDTDSLKLKKGDIIDI----ISKPPMGT--WMGLLNN---KVGTFKFIY- 62
Query: 1396 VEE 1398
V+
Sbjct: 63 VDV 65
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA
complex, transcription/DNA complex; HET: DNA; 2.00A
{Schizosaccharomyces pombe} SCOP: h.1.3.1
Length = 70
Score = 29.6 bits (66), Expect = 1.4
Identities = 12/55 (21%), Positives = 22/55 (40%)
Query: 612 RMGERDSSRKERNEVEAASMDLFGKCQKERMDNLEANQEIDRLRKHTDKLQAELQ 666
+ R + R R E L + + + E D+LR+ +L+ EL+
Sbjct: 13 KAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 29.2 bits (66), Expect = 1.7
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 1334 YMRALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSK 1393
RAL+ D D +L F + DIL + G W+ L + G+ P+
Sbjct: 9 LARALYDNCPDCSD--ELAFSRGDILTILEQHVPESEGWWKCLL------HGRQGLAPAN 60
Query: 1394 YKVEE 1398
++
Sbjct: 61 R-LQI 64
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 32.1 bits (74), Expect = 1.7
Identities = 31/180 (17%), Positives = 61/180 (33%), Gaps = 49/180 (27%)
Query: 512 SLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASAL 571
+ + +S +E++ L RK LE+E E LK+E
Sbjct: 390 ARLRMALESAPEEIDALE-------RKKLQLEIE--------------REALKKEKDPDS 428
Query: 572 HDRDKAL-KECNDLRERFGEFTAAKEECQREAFHARFEYAMRMGERDSSRKERNEVEAAS 630
+R KA+ E L E + A+ E +RE R+ ++ ++
Sbjct: 429 QERLKAIEAEIAKLTEEIAKLR-AEWEREREIL-------------RKLREAQHRLDEVR 474
Query: 631 MDLFGKCQKERMDNLEANQE-----IDRLRKHTDKLQAELQDQSVNYLFILTESIQEAEV 685
++ ER +L E + +L + L +L+ + + E ++
Sbjct: 475 REI---ELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGAR-----FVRLEVTEEDI 526
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 31.7 bits (71), Expect = 2.0
Identities = 28/221 (12%), Positives = 69/221 (31%), Gaps = 18/221 (8%)
Query: 375 NQHYMSALNKYETIKD-EYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQE 433
Q +M Y + + + + L + E+ + +K+
Sbjct: 64 QQSHMPLQYIYTLFLEHDLSLGTLAMETVAQQKRDYYQPLAAKRTEIEKWRKEF------ 117
Query: 434 KNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKA 493
K ++E+ + + A R ++ + + + A + + +
Sbjct: 118 KEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRAR--SQGSPEDSAPQASPGPSKQQERR 175
Query: 494 TKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDK 553
+ + + A Y + E ++ +++E + V ++ L + E++
Sbjct: 176 RRSREEAQAKAQEAEALYQACVREANARQQDLEIA---KQRIVSHVRKLVFQGDEVLRRV 232
Query: 554 KTLSYQIETLKREIASALHDRDKALKECNDLRE---RFGEF 591
+ L+ A AL EC E R+ EF
Sbjct: 233 TLSLFG---LRGAQAERGPRAFAALAECCAPFEPGQRYQEF 270
Score = 30.2 bits (67), Expect = 4.8
Identities = 30/232 (12%), Positives = 73/232 (31%), Gaps = 26/232 (11%)
Query: 467 EALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEME 526
E L + + V + K+L TE+R + E++ K
Sbjct: 3 EELDLRLIRTKGGVDAALEYAKTWSRYAKELLAWTEKRASYELEFA----------KSTM 52
Query: 527 KLSEDLTQAVRK----------IKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDK 576
K++E ++++ LE + +T++ Q + +A+ + +K
Sbjct: 53 KIAEAGKVSIQQQSHMPLQYIYTLFLEHDLSLGTLAMETVAQQKRDYYQPLAAKRTEIEK 112
Query: 577 ALKECND----LRERFGEFTAAKEECQREAFHARFEY--AMRMGERDSSRKERNEVEAAS 630
KE + ++R E A Q + + + DS+ +
Sbjct: 113 WRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQ 172
Query: 631 MDLFGKCQKERMDNLEANQEIDRLRKHTDKLQAELQDQSVNYLFILTESIQE 682
++ + EA + + Q +L+ + + + + +
Sbjct: 173 ERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAKQRIVSHVRKLVFQ 224
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle
protein; 2.50A {Gallus gallus}
Length = 101
Score = 29.9 bits (67), Expect = 2.1
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 1/88 (1%)
Query: 423 IKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKE 482
IKK+ + + +K A+ + A + E+ Q+ L + + E +
Sbjct: 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSES 66
Query: 483 INTAMAVRMKATKDLKRLTEERNAAMQE 510
+ A +A K E A++
Sbjct: 67 VKEAQEKLEQAEKKATD-AEAEVASLNR 93
Score = 27.9 bits (62), Expect = 9.0
Identities = 18/94 (19%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 393 DALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAI 452
+A++K+ L A+D+ E A+ + + + +C+ + +E+ ++ G +
Sbjct: 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTE------- 57
Query: 453 RQWDIALRERNEYQEALAKVQQQHEDAVKEINTA 486
E +Y E++ + Q++ E A K+ A
Sbjct: 58 -------DEVEKYSESVKEAQEKLEQAEKKATDA 84
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha
solenoid, regulatory PART LID, hydrolase, protein
binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Length = 394
Score = 31.8 bits (71), Expect = 2.1
Identities = 26/151 (17%), Positives = 41/151 (27%), Gaps = 22/151 (14%)
Query: 367 DAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQ 426
G A L +I A K L++ + + K
Sbjct: 31 QEGKAKELADLIKVTRPFLSSISKAKAA--KLVRSLVDMFLDMDAGTGIEVQL---CKDC 85
Query: 427 CEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTA 486
E QEK T LR+ + + Y EALA Q + K +
Sbjct: 86 IEWAKQEKRTFLRQSLEARL---------IALYFDTALYTEALALGAQLLRELKKLDDKN 136
Query: 487 MAVRM--------KATKDLKRLTEERNAAMQ 509
+ V + A +L + +A
Sbjct: 137 LLVEVQLLESKTYHALSNLPKARAALTSART 167
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Length = 83
Score = 29.3 bits (66), Expect = 2.1
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 388 IKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQ 447
IKD + +LR L ++ L+ A E + ++++ Q+ + R+ L+QQ
Sbjct: 17 IKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Length = 301
Score = 31.6 bits (71), Expect = 2.3
Identities = 14/218 (6%), Positives = 64/218 (29%), Gaps = 11/218 (5%)
Query: 475 QHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSE--RDSVHKEMEKLSEDL 532
+ + + + +ER Q Y+ + + + K K +
Sbjct: 4 GSSGQFEVLERHTQWGLDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPES 63
Query: 533 TQAVRK-IKTLEMENKELVEDKKTLSYQIET-LKREIASALHDRDKALKECNDLRERFGE 590
+ ++ + E + ++ ++ + + E+ + + K R
Sbjct: 64 KFSQQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRR--- 120
Query: 591 FTAAKEECQREAFHARFEYAMRMGERDSSRKERNEVEAASMDLFGKCQKERMDNLEANQE 650
E ++ +++ ++ E + + + ++ +K + +
Sbjct: 121 AQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHM 180
Query: 651 IDRLRK----HTDKLQAELQDQSVNYLFILTESIQEAE 684
+ + + + + + + + +Q+ +
Sbjct: 181 AEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDMD 218
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear
membrane LEFT-handed coiled coil, right-handed coiled
coil; HET: MSE; 2.40A {Homo sapiens}
Length = 74
Score = 28.9 bits (65), Expect = 2.4
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 314 RGQHQAAMAQLEAAAQES----SSLRSKYSDLISDKQRLD------RELLE 354
R + +A+ E E +Y +L+ K LD R+LLE
Sbjct: 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative,
no structural genomics consortium, NESG, structural
protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Length = 119
Score = 29.9 bits (68), Expect = 2.5
Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 20/113 (17%)
Query: 559 QIETLKREIASALHDRDKALKECNDLRERFGEFTAAKEECQREAFHARFEYAMRMG-ERD 617
++ L+R++ +D+ + E ++L E +E E R E
Sbjct: 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE----------EMLQREEAENT 70
Query: 618 --SSRKERNEVEAASMDLFGKCQKERMDNLEANQEIDRLRKHTDKLQAELQDQ 668
S R++ + A +DL K +++L +EI L+K ++ ELQ Q
Sbjct: 71 LQSFRQDVDNASLARLDLERK-----VESL--QEEIAFLKKLHEEEIQELQAQ 116
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 31.3 bits (70), Expect = 2.5
Identities = 31/210 (14%), Positives = 86/210 (40%), Gaps = 11/210 (5%)
Query: 393 DALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAI 452
D K L + ++ +L+ + + +KKQ +++ + + + R L Q+ +
Sbjct: 4 DGNMKEVTQLPEPQTASLAELQQMKLFLKLLKKQEKELKELERKGSKRREELLQKYSVLF 63
Query: 453 RQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYS 512
+ + +++++ E + + ++ K ++ E+ A + E
Sbjct: 64 LE----PVYPRGLDSQVVELKERLEMELIHLGEEYHDGIRRRK--EQHATEQTAKITE-- 115
Query: 513 LIMSERDSVHKEMEKLSEDLTQAVRKIKTLE-MENKELVEDKKTLSYQIETLKREIASAL 571
L ++ + K +++ SE + ++K + ++ +++ + E LK+EI ++
Sbjct: 116 LAREKQIAELKALKESSESNIKDIKKKLEAKRLDRIQVMMRSTSDKAAQERLKKEINNS- 174
Query: 572 HDRDKALKECNDLRERFGEFTAAKEECQRE 601
+ ++ L E+ + EE Q E
Sbjct: 175 -HIQEVVQTIKLLTEKTARYQQKLEEKQAE 203
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 31.4 bits (70), Expect = 2.6
Identities = 28/224 (12%), Positives = 73/224 (32%), Gaps = 27/224 (12%)
Query: 500 LTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQ-----AVRKIKTLEMENKELVEDKK 554
++E + + S + ++++ ++ ++ K E ++ +
Sbjct: 94 MSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWA 153
Query: 555 TLSYQIETLK-------REIASALHDRDKALKECNDLRERFGEFTAAKEECQREAFHARF 607
++E K +E A+ + + + E+ + E+C+++ +
Sbjct: 154 KKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKE 213
Query: 608 EYAMRMGERDSSRKERNEVEAASMDLFGKCQKERMDNLEANQEIDRLRKHTDKLQAELQD 667
+Y + E D + + +F +CQ+ E RLR + L +
Sbjct: 214 KYEKSLKELD---QGTPQYMENMEQVFEQCQQ---------FEEKRLRFFREVLLEVQKH 261
Query: 668 QSVNYLFILTESIQEAEVSKRRRDWAFSERDKIEVIDSYHTKHA 711
++ + + E S R D D ++ A
Sbjct: 262 LDLSNVAGYKAIYHDLEQSIRAADA---VEDLRWFRANHGPGMA 302
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate
synthase, structural genomics, structural genomics
consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium
parvum} PDB: 2o1o_A* 2q58_A*
Length = 368
Score = 31.3 bits (71), Expect = 3.2
Identities = 11/64 (17%), Positives = 20/64 (31%)
Query: 369 GSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCE 428
GS+ + H N Y + +Y +D + KL L E + +
Sbjct: 2 GSSHHHHHHSSGRENLYFQGEYDYTDFINYYDKFKVIVYNVLKKLPLNDEIRKPVIEYYL 61
Query: 429 DMNQ 432
+
Sbjct: 62 NCID 65
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil,
coiled coil, cytoplasm, disease mutation, ectodermal
dysplasia; 3.20A {Homo sapiens}
Length = 130
Score = 29.9 bits (66), Expect = 3.2
Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 18/128 (14%)
Query: 412 KLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAK 471
+LE A +E ++ + +++ ER L+QQ + + Q LR + + EA +
Sbjct: 17 RLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQ----LRMQGQSVEAALR 72
Query: 472 VQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEY-SLIMSERDSVHKEMEKLSE 530
+++Q + + L +L + QEY + I S ++ E
Sbjct: 73 MERQAAS-------------EEKRKLAQLQVAYHQLFQEYDNHIKSSVVGSERKRGMQLE 119
Query: 531 DLTQAVRK 538
DL Q +++
Sbjct: 120 DLKQQLQQ 127
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled
coil, alanine, symmetry, axial stagger, BEND,
contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Length = 81
Score = 28.6 bits (64), Expect = 3.4
Identities = 17/80 (21%), Positives = 36/80 (45%)
Query: 519 DSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKAL 578
D++ K+M+ L D A+ + + E + K E K L ++ L++++ + DK
Sbjct: 2 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYS 61
Query: 579 KECNDLRERFGEFTAAKEEC 598
+ D +E+ +C
Sbjct: 62 ESLKDAQEKLELADKKATDC 81
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein;
2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Length = 196
Score = 30.4 bits (68), Expect = 3.7
Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 2/159 (1%)
Query: 323 QLEAAAQESSSLRSKYSDLISDKQRLDRELLELRSGCCTQPESDDAGSADSLNQHYMSAL 382
L+ + + S + L+++ L +D + +
Sbjct: 17 DLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG 76
Query: 383 NKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERN 442
+ + + R+RF LI + +E + K+Q + E E
Sbjct: 77 IHDTNKQAQAENSRQRFLKLIQDYRIV--DSNYKEENKEQAKRQYMIIQPEATEDEVEAA 134
Query: 443 GLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVK 481
Q + R E + ALA+VQ +H++ +K
Sbjct: 135 ISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQELLK 173
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 3.7
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 11/33 (33%)
Query: 1057 KKENQRFRI--P-SNPSVAFKTSGTKMSNGSIE 1086
KK ++ S P++A ++E
Sbjct: 23 KKLQASLKLYADDSAPALAI--------KATME 47
Score = 29.9 bits (66), Expect = 3.9
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 10/35 (28%)
Query: 27 KTQVEKESRMLQLHSVSHNYSHDS----AIDTDLQ 57
K ++K L+L Y+ DS AI ++
Sbjct: 19 KQALKKLQASLKL------YADDSAPALAIKATME 47
Score = 29.5 bits (65), Expect = 5.9
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 12/34 (35%)
Query: 1615 KIECEHKHYI--SAVIPAGVNIAYMCTQIQTAVE 1646
K++ K Y SA PA +A I+ +E
Sbjct: 24 KLQASLKLYADDSA--PA---LA-----IKATME 47
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 31.3 bits (70), Expect = 3.8
Identities = 13/131 (9%), Positives = 40/131 (30%), Gaps = 22/131 (16%)
Query: 152 WDIALRERNEYQEALAKVQQQHE------DAVKEINTAMAVTNYLDGLQLNNSYDHGLTL 205
+ + E+ Y+ + + +++ + E T+ + + +
Sbjct: 685 SE-RIYEK--YRNLVPLCKTRYDLSNVIVEMQGEYRTSHSYEMGGTFTDKDPFRSGRIAC 741
Query: 206 E-----SGLYICKISPG--------SLAAKEGSLAVGDRVLSINNRTVDGLSSAREGMAL 252
+ + K G S + G G + I+ TV S+ ++
Sbjct: 742 DFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGSNIYRVLSE 801
Query: 253 LSDSPDVLTIT 263
+ + + ++
Sbjct: 802 KAGTSARIRLS 812
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative
splicing, cell junction, cytoplasm, membrane,
phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Length = 79
Score = 28.4 bits (63), Expect = 3.9
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 524 EMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECND 583
M E+ Q K++ LE N EL Q+ ++R + A +R++A E
Sbjct: 3 HMAAEREETQQ---KVQDLETRNAELEH-------QLRAMERSLEEARAERERARAEVGR 52
Query: 584 LRE 586
+
Sbjct: 53 AAQ 55
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell
surface, secretory P metal binding protein; 2.00A {Homo
sapiens} PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Length = 211
Score = 30.2 bits (67), Expect = 4.2
Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 9/134 (6%)
Query: 460 RERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEY-SLIMSER 518
E +Q+A +++ +H + + ++ + K+L + ++ A +Q + + S
Sbjct: 18 NEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPK--ADKKAVIQHFQEKVESLE 75
Query: 519 DSVHKEMEKLSEDLTQAV------RKIKTLEMENKELVEDKKTLSYQIETLKREIASALH 572
E ++L E V R+ LE L + LK+ + +
Sbjct: 76 QEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQK 135
Query: 573 DRDKALKECNDLRE 586
DR LK +R
Sbjct: 136 DRQHTLKHFEHVRM 149
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical
linker region, 2 tandem 3-helix coiled- coils,
structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1
a.7.1.1 PDB: 1aj3_A
Length = 213
Score = 30.3 bits (68), Expect = 4.4
Identities = 22/189 (11%), Positives = 58/189 (30%), Gaps = 21/189 (11%)
Query: 401 DLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALR 460
+L H +L + + + + ++ + E ++Q+ + W +
Sbjct: 37 NLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDNTIGKEE---IQQRLAQFVDHWKELKQ 93
Query: 461 ERNEYQEALAKVQ--QQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSER 518
+ L + QQ V+E + + A ++Y ++
Sbjct: 94 LAAARGQRLEESLEYQQFVANVEEEEAWINEK------------MTLVASEDYGDTLAAI 141
Query: 519 DSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKAL 578
+ K+ E D T ++ + ++L++ I L + L
Sbjct: 142 QGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENIT----AKMKGLKGKVSDL 197
Query: 579 KECNDLRER 587
++ R+
Sbjct: 198 EKAAAQRKA 206
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic
protein; HIV, antiviral protein; 2.80A {Escherichia
coli}
Length = 471
Score = 31.0 bits (70), Expect = 4.4
Identities = 23/100 (23%), Positives = 38/100 (38%)
Query: 466 QEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEM 525
EAL Q + A + M R + LTE + + + +V M
Sbjct: 372 DEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALM 431
Query: 526 EKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKR 565
L + Q +K++ LE E L + S ++E L+R
Sbjct: 432 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 471
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase,
membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 30.7 bits (68), Expect = 4.5
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 890 KPTSLGEHSPRVHRKSVNSSTQTMPLYVRYGDQPPPDSYQVPKTSTKSHDPAKPSPSSSG 949
+ TS E++ H+++++ S+ V G P + + ++ S SS
Sbjct: 15 RETSHDENTSFFHKRTISGSSAHHSRNVSQGAVPSSAPPVSGGNYSHKRNVSRASNSSQT 74
Query: 950 GGGKWDSLREKMQGVRRR 967
+ L E+ + R+
Sbjct: 75 S----NFLAEQYERDRKA 88
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA
repair, recombination, HOOK motif, replication; HET: DNA
CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Length = 112
Score = 29.0 bits (64), Expect = 4.7
Identities = 19/108 (17%), Positives = 46/108 (42%), Gaps = 19/108 (17%)
Query: 460 RERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKR-----------LTEE-RNAA 507
++ +E ++ Q+ + E+ + A ++LK+ LT+E R
Sbjct: 10 TKKTTIEEERNEITQR----IGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREEL 65
Query: 508 MQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKT 555
+ +Y L + ++ + KL + ++ R+++ ++ME K L
Sbjct: 66 LSKYHL---DLNNSKNTLAKLIDRKSELERELRRIDMEIKRLTPLLTV 110
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein,
oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB:
3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A*
3b0j_A* 3b0l_A* 3b0h_A*
Length = 591
Score = 30.8 bits (70), Expect = 4.8
Identities = 13/86 (15%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 362 QPESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVA 421
+P ++ L + + +N E +K E + ++ ++ I ELA+ +
Sbjct: 53 EPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIE---------ELAKIPIE 103
Query: 422 RIKKQCEDMNQEKNTALRERNGLKQQ 447
I + + ++ + GL +
Sbjct: 104 EIDQ--SKLTKDDIDVRLKWLGLFHR 127
>3sks_A Putative oligoendopeptidase F; structural genomics, center for
structural genomics of infec diseases, csgid, protease,
hydrolase; 2.05A {Bacillus anthracis}
Length = 567
Score = 30.9 bits (70), Expect = 5.0
Identities = 10/55 (18%), Positives = 14/55 (25%)
Query: 1560 GVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGL 1614
GVE+L I Y L T + M ++ L
Sbjct: 263 GVEKLAYYDENFEFPTGNPTPKGDADWIVNHGKTMYKELSAETDEFFNFMLDNDL 317
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 30.6 bits (68), Expect = 5.3
Identities = 31/205 (15%), Positives = 65/205 (31%), Gaps = 18/205 (8%)
Query: 369 GSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCE 428
G A+ ++ K + ++ +RKR DL + +E Q++ K +
Sbjct: 1 GQANHPTAAVVT--EKQQMLEQHLQDVRKRVQDLEQK----MKVVENLQDDFDFNYKTLK 54
Query: 429 DMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMA 488
++ ++ +Q+ + + R LA + E K +
Sbjct: 55 SQGDMQDLNGNNQSVTRQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTD--- 111
Query: 489 VRMKATKDLKRLTEER-NAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENK 547
+ D KR + L D + + L+E Q ++IK LE +
Sbjct: 112 ---EELADWKRRQQIACIGGPPNICL-----DRLENWITSLAESQLQTRQQIKKLEELQQ 163
Query: 548 ELVEDKKTLSYQIETLKREIASALH 572
++ + L+ I
Sbjct: 164 KVSYKGDPIVQHRPMLEERIVELFR 188
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A
{Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Length = 86
Score = 28.4 bits (64), Expect = 5.3
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 17/67 (25%)
Query: 298 ETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQES----SSLRSKYSDLISDKQRLD---- 349
+ + +A+ E E +Y +L+ K LD
Sbjct: 21 DLEDSLARERD-------TSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 73
Query: 350 --RELLE 354
R+LLE
Sbjct: 74 AYRKLLE 80
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 29.6 bits (67), Expect = 5.3
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 321 MAQLEAAAQESSSLRSKYSDLISDKQRLDRELLELR----SGCCTQPESDD 367
M SS L + S L R+ +L+ G +P S+D
Sbjct: 1 MGSSHHHHHHSSGLVPRGSMHGRAYLLLHRDFCDLKENNYKGITAKPVSED 51
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 30.0 bits (67), Expect = 5.4
Identities = 18/134 (13%), Positives = 45/134 (33%), Gaps = 15/134 (11%)
Query: 455 WDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLI 514
WD+ + + ++ ++ +KE+ ++K+ K K A+Q
Sbjct: 75 WDVFKTSTEKLANCHLDLVRKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTI--- 131
Query: 515 MSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIETLKREIASALHDR 574
S+ + ++K E+ + + L+ E E +K + A
Sbjct: 132 ----QSITQALQKSKENYNAKCVEQERLKKEGATQREIEKA--------AVKSKKATDTY 179
Query: 575 DKALKECNDLRERF 588
+++ + F
Sbjct: 180 KLYVEKYALAKADF 193
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 28.1 bits (63), Expect = 5.4
Identities = 16/63 (25%), Positives = 20/63 (31%), Gaps = 10/63 (15%)
Query: 1336 RALFSRTGDLGDALQLRFHKDDILYVDNTMFNGVPGHWRAWLVDADGFRQQCGIIPSKYK 1395
AL+ L FHK + + PG W W + G IPS Y
Sbjct: 10 VALYDYNATRWT--DLSFHKGEKFQI----LEFGPGDW--WEAR-SLTTGETGYIPSNY- 59
Query: 1396 VEE 1398
V
Sbjct: 60 VAP 62
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH,
adaptor, endocytosis, phosphoprotein; 2.40A
{Saccharomyces cerevisiae}
Length = 287
Score = 30.1 bits (67), Expect = 5.4
Identities = 30/205 (14%), Positives = 72/205 (35%), Gaps = 29/205 (14%)
Query: 461 ERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYS-----LIM 515
+R +Y +++ + +A + I ++ KD L +E + Y+ +I
Sbjct: 27 QRTKYADSIL-TTKSPYEATETIRIRLSQVKLLNKDFYLLFKELANLKRNYAQQLRKIIA 85
Query: 516 SERDSVHKEMEKLSEDLTQAVRKIKTLEMEN------------KELVEDKKTLSYQIETL 563
D ++ E +++ + +EL D K+ + TL
Sbjct: 86 ENEDITKILNAQMIESNVLTPQEMSAFRFNSLGELRNVWDTVIEELKSDLKSSTEYYNTL 145
Query: 564 KREIASAL---HDRDKALKECNDLRERFGEFTAAKEECQREAFHARFEYAMRMGERDSSR 620
+++ L + + + +E DL + + A+ E + + +R
Sbjct: 146 DQQVVRELKESVENNTSWRESKDLHSKLSKNAASIEHYS--------KNNENSSHLEEAR 197
Query: 621 KERNEVEAASMDLFGKCQKERMDNL 645
++ ++ +LF R+D L
Sbjct: 198 RQWDQQSPYLFELFETIDYNRLDTL 222
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 30.0 bits (67), Expect = 6.4
Identities = 16/135 (11%), Positives = 40/135 (29%), Gaps = 9/135 (6%)
Query: 370 SADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCED 429
S +++ +Y+ EYD L + + +E E + ++Q +
Sbjct: 12 SVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQT 71
Query: 430 ---------MNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAV 480
+ +E + + R + ++ L + +
Sbjct: 72 QEKCSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQDLRAQASDNREID 131
Query: 481 KEINTAMAVRMKATK 495
K +N+ M+ K
Sbjct: 132 KRMNSLKPDLMQLRK 146
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle,
signal transduction, methyl-accepting receptor; 2.5A
{Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Length = 309
Score = 30.0 bits (68), Expect = 6.6
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 466 QEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEM 525
Q A +++Q AV EI TAM K +++ +E NA +QE S E S + +
Sbjct: 236 QNIAAAIEEQ-TAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRVQTI 294
Query: 526 EKLSEDLTQAVRKIK 540
+ + L + V + K
Sbjct: 295 RENVQMLKEIVARYK 309
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase
inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB:
3ahm_A* 3aho_A* 2h1n_A 2h1j_A
Length = 564
Score = 30.1 bits (68), Expect = 7.1
Identities = 13/55 (23%), Positives = 17/55 (30%)
Query: 1560 GVERLHRQHVYPIVLLIKFKSTKQIKEIKEIRDGRYSSLDKVTAKAAKEMYEHGL 1614
GVE+L + I E Y L T + + M EH L
Sbjct: 260 GVEKLKYYDEAFVFPTGNPMPKGDANWIIENGKKMYEELSPETGEFFRYMIEHEL 314
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A
{Saccharomyces cerevisiae} SCOP: a.252.1.1
Length = 151
Score = 28.9 bits (64), Expect = 7.2
Identities = 7/57 (12%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 495 KDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAV---RKIKTLEMENKE 548
+ + L ++ E + +++ + + ++ L ED + +K +E+
Sbjct: 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVDGIANSKKSTAAALEHHH 148
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken
structural genomics/proteomics in RSGI, polxc, PHP, DRP
lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB:
3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Length = 575
Score = 30.1 bits (67), Expect = 7.4
Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 1174 QLLEVCGINM-RSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAE 1225
+ E G N R Y AA L I + + + EL G G AE
Sbjct: 15 LMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVGPDLAE 67
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 30.0 bits (68), Expect = 7.4
Identities = 21/125 (16%), Positives = 44/125 (35%), Gaps = 8/125 (6%)
Query: 393 DALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAI 452
++ R+RF D VD + A ++ R + E + N + K+ A
Sbjct: 24 ESQRRRFADP-----DIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADG 78
Query: 453 RQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYS 512
+I + + Y+ K +Q + V ++ + + L +E +E
Sbjct: 79 DTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSK---DLSDQVAGLAKEAQQLEEERD 135
Query: 513 LIMSE 517
+M
Sbjct: 136 KLMLN 140
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome;
2.95A {Homo sapiens}
Length = 450
Score = 30.1 bits (67), Expect = 7.8
Identities = 33/260 (12%), Positives = 78/260 (30%), Gaps = 24/260 (9%)
Query: 293 VRQHNETVRRGDHTLKELEYYRGQHQAAMAQLEAAAQE-SSSLRSKYSDLISDKQRLDRE 351
+ + + + L+E Q + L A+ E LR ++I R
Sbjct: 51 IGDYRWQLDKIKADLREKSA-IYQLEEEYENLLKASFERMDHLRQLQ-NIIQATSREIMW 108
Query: 352 LLELRSGCCTQPESDDAGSADSLNQHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVD 411
+ + SD + + + +++ E + E + L++ D L+ A D
Sbjct: 109 INDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASD 168
Query: 412 KLELAQEEVARIKKQCEDMNQEKNTALRERNGLKQQCTAAIRQWDIALRERNEYQEALAK 471
K+E A + + LK+ + E Q A
Sbjct: 169 KIE------AYMDTLQTQWSWILQITKCIDVHLKENAA--------YFQFFEEAQSTEAY 214
Query: 472 VQQQHEDAVKEINTAMAVRMKATKDLKRLTEERNAAMQEYSLIMSERDSVHKEMEKLSED 531
++ + K+ + ++ + + E+ + EY + + S+
Sbjct: 215 LKGLQDSIRKKYPCDKNMPLQHLLEQIKELEKEREKILEYK-------RQVQNLVNKSKK 267
Query: 532 LTQAVRKIKTLEMENKELVE 551
+ Q + ++
Sbjct: 268 IVQLKPRNPDYRSNKPIILR 287
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain
alpha-II spectrin, fordrin alpha chain, sptan1,
SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Length = 218
Score = 29.5 bits (66), Expect = 7.8
Identities = 30/204 (14%), Positives = 63/204 (30%), Gaps = 38/204 (18%)
Query: 382 LNKYETIKDEYDALRKRFDDLINTHSTAVDKLELAQEEVARIKKQCEDMNQEKNTALRER 441
L +++ + E DA F L IK++ + ++QE+
Sbjct: 52 LERHQEHRTEIDARAGTFQAF---EQFGQQLLAHGHYASPEIKQKLDILDQERA------ 102
Query: 442 NGLKQQCTAAIRQWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMKATKDLKRLT 501
+ A +R + ++Q H D ++ MA R
Sbjct: 103 ------------DLEKAWVQRRMMLDQCLELQLFHRDC-EQAENWMAAR----------- 138
Query: 502 EERNAAMQEYSLIMSERDSVHKEMEKLSEDLTQAVRKIKTLEMENKELVEDKKTLSYQIE 561
E ++ + +++ K+ E + + KI L+ +L+ I
Sbjct: 139 -EAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKGDI- 196
Query: 562 TLKREIASALHDRDKALKECNDLR 585
+ + DR + LK +
Sbjct: 197 ---SSRRNEVLDRWRRLKAQMIEK 217
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 29.4 bits (67), Expect = 7.9
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 23/109 (21%)
Query: 1486 TVTDKLLQDFPDKFV-------RCAP---EI--MH---CPQAAMEKGLADNLFVDYRKKG 1530
T+ KLL +FP+ F R E + + E L + F++Y
Sbjct: 38 TLIKKLLNEFPNYFYFSVSCTTR-KKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDN-- 94
Query: 1531 AYFEC---TSVAAVKDACDKNNAHVILDVSLAGVERLHRQHVYPIVLLI 1576
Y T + A ++N + ++++ GV++L + L I
Sbjct: 95 -YANNFYGTLKSEYDKAKEQNK-ICLFEMNINGVKQLKKSTHIKNALYI 141
>3d01_A Uncharacterized protein; protein with unknown function, structural
genomics, PSI, MCS protein structure initiative; HET:
PG5; 1.70A {Agrobacterium tumefaciens str}
Length = 165
Score = 29.1 bits (66), Expect = 8.1
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 16/71 (22%)
Query: 1241 MIETRKCSNLGISL-VGGNAVGIYVHSVQSGSLGYSAG---------LRTGDRILEYNGT 1290
+IE R LG +L V YV SG+L Y +G TG + G
Sbjct: 13 VIEGR-LKELGFTLPVAAAPAANYVPFTISGNLLYVSGQLPMESGKIAVTG-LV----GR 66
Query: 1291 DLRAATAEEAA 1301
D+ A+A+ AA
Sbjct: 67 DVDVASAQRAA 77
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 30.2 bits (67), Expect = 8.1
Identities = 42/244 (17%), Positives = 76/244 (31%), Gaps = 32/244 (13%)
Query: 454 QWDIALRERNEYQEALAKVQQQHEDAVKEINTAMAVRMK-ATKDLKRLTEERNAAMQEYS 512
+++ R L V DA K A VR A+ + ++
Sbjct: 546 HFELKNRNDPAEAAKLFSVPDFVGDACK--AIASRVRGAVASVTFDDFHKNSARIIRMAV 603
Query: 513 LIMSERDSVHKEMEKLSEDLTQAV-----RKIKTLEMENKELVEDKKTLSYQIET-LKRE 566
+ + L + QAV + ++++++ E V+ + + Q L E
Sbjct: 604 FGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIE 663
Query: 567 IASALHDRDKALKECNDLRERFGEFTAAKEECQREAFHARFEYAMRMGERDSSRKERNEV 626
I + + + +E G K Q EA AR E + N
Sbjct: 664 ITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAK 723
Query: 627 EAASMDLFGKCQKERMDNLEANQEIDRLRKHTDKLQAELQDQSVNYLFILTESIQEAEVS 686
A E+ E R+ LQA+L+ Q+ EAE+
Sbjct: 724 AEA----------------ESRAEAARIEGEGSVLQAKLKAQA-------LAIETEAELE 760
Query: 687 KRRR 690
+ ++
Sbjct: 761 RVKK 764
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A
{Encephalitozoon cuniculi} PDB: 2uy1_B
Length = 493
Score = 29.8 bits (66), Expect = 8.2
Identities = 38/263 (14%), Positives = 82/263 (31%), Gaps = 27/263 (10%)
Query: 376 QHYMSALNKYETIKDEYDALRKRFDDLINTHSTAVDKL--ELAQEEVARIKKQCEDMNQE 433
+ Y+ K E + + +R + + T ++ +L + E+ K + + +
Sbjct: 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGD 148
Query: 434 KNTALRERNGLKQQCTAAIR-----------QWDIALRERNEYQEALAKVQQQHEDAVKE 482
+ QQ IR ++ + + +++ H +
Sbjct: 149 TLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS 208
Query: 483 INTAMAVRMKATKDLKRL-TEERNAAMQEYSLIMSERDSVH---KEMEKLSEDLTQAVRK 538
A V ++ L + +E+ + E + MS+ + + RK
Sbjct: 209 FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYYGLVMDEEAVYGDLKRK 268
Query: 539 IKTLEMENKELVEDKKTLSYQIETLKREIASALHDRDKALKECNDLRERFGEFTAAKEEC 598
E E+ E V K+ +I L + + + L+ R+ F E
Sbjct: 269 YSMGEAESAEKVFSKELDLLRINHLNYVL------KKRGLELF---RKLFIELGNEGVGP 319
Query: 599 QREAFHARFEYAMRMGERDSSRK 621
+ A EY G R +
Sbjct: 320 HVFIYCAFIEY-YATGSRATPYN 341
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase;
2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A*
3sq3_A
Length = 470
Score = 29.9 bits (66), Expect = 8.3
Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 2/95 (2%)
Query: 651 IDRLRKHTDKLQAELQDQSVNYLFILTESIQEAEVSKRRRDWAFSERDKIEVIDSYHTKH 710
L+ + L + + YL + ++K + F+ ++E + S +K
Sbjct: 142 SPLLKIGKEGLPVPFKRSLIEYLNSYHLKDIDELITKSVEEVNFAPLSELEFVYSTPSKF 201
Query: 711 AGRHKR--GKELDKNGGTWPKARSGPVIENGTGTI 743
+L+K + + T +I
Sbjct: 202 QSSGLLSFYNKLEKLSAGTSASDTAKHYLCQTSSI 236
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 29.8 bits (66), Expect = 8.5
Identities = 31/262 (11%), Positives = 72/262 (27%), Gaps = 46/262 (17%)
Query: 467 EALAKVQQQHEDAVKEINTAMAVRMKATKD----LKRLTEERNAAMQE----------YS 512
+ K ++ + R + K L +++ +
Sbjct: 32 KRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWM 91
Query: 513 LIMSERDSVHKEMEKLSEDLTQAV-------------RKIKTLEMENKELVEDKKTLSYQ 559
MSE + V + ++ L +++ E KE + +
Sbjct: 92 AFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKP 151
Query: 560 IETLKREIASALHDRDKALKECNDLRERFGE--------------FTAAKEECQREAFHA 605
+E+ +A A KE R E+C+++
Sbjct: 152 WAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKT 211
Query: 606 RFEYAMRMGERDSSRKERNEVEAASMDLFGKCQKERMDNLEANQEIDRLRKHTDKLQAEL 665
+ +Y + E D + E + + +++R+ + L + L
Sbjct: 212 KEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFR-----EVLLEVQKHLDLSN 266
Query: 666 QDQSVNYLFILTESIQEAEVSK 687
L +SI+ A+ +
Sbjct: 267 VAGYKAIYHDLEQSIRAADAVE 288
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.129 0.366
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 24,811,001
Number of extensions: 1546948
Number of successful extensions: 4844
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4342
Number of HSP's successfully gapped: 1238
Length of query: 1659
Length of database: 6,701,793
Length adjustment: 107
Effective length of query: 1552
Effective length of database: 3,714,246
Effective search space: 5764509792
Effective search space used: 5764509792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.2 bits)