Query psy3836
Match_columns 217
No_of_seqs 107 out of 1222
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 18:40:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 1.9E-40 6.4E-45 268.6 11.3 188 12-207 102-290 (303)
2 1okc_A ADP, ATP carrier protei 100.0 2.3E-38 7.8E-43 255.7 16.4 194 11-206 4-204 (297)
3 1okc_A ADP, ATP carrier protei 100.0 2E-38 7E-43 256.0 14.3 186 13-203 111-297 (297)
4 2lck_A Mitochondrial uncouplin 100.0 2.3E-38 7.8E-43 256.4 13.9 187 16-207 3-196 (303)
5 2acm_A Mucin-1; auto-catalytic 27.3 8.8 0.0003 22.2 -0.7 20 55-74 40-59 (66)
6 3tgu_G UQCRQ, mitochondrial ub 23.0 20 0.00068 22.2 0.3 41 172-212 34-75 (81)
7 1y9i_A Low temperature require 18.9 2.5E+02 0.0084 20.1 5.3 42 86-127 111-156 (178)
8 1pp9_G Ubiquinol-cytochrome C 18.1 30 0.001 21.4 0.3 43 170-212 32-75 (81)
9 3f2e_A SIRV coat protein; four 17.3 78 0.0027 19.3 2.0 58 153-210 5-70 (100)
10 2b0j_A 5,10-methenyltetrahydro 16.9 3.9E+02 0.013 21.1 6.3 68 128-210 273-344 (358)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.9e-40 Score=268.62 Aligned_cols=188 Identities=30% Similarity=0.415 Sum_probs=170.1
Q ss_pred hhhHHHHHHHhHHHHHHHHhhccHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHhhchhhhcccchhhhhccccchhHH
Q psy3836 12 NIKYEHLLAGVTGGVTSTLILHPLDLLKIRFAVSDGRSPNPSYNNLSNAVHTIFRQEGFKGLYKGVTPNIWGSGSAWGFY 91 (217)
Q Consensus 12 ~~~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~ 91 (217)
.+....+++|++|++++.++++|+|+||+|+|++........|++.++++++|+++||++|||||+.+.+++.++..+++
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~ 181 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAE 181 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999987543456799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHhHhhhcccHHHHHHHHhhhccCCCCCCCCCCCcHHHHHHHHHHhhC
Q psy3836 92 FLFYNTIKTWIQQGNTTKPIGPTMNMVAAAEAGILTLVMTNPVWVVKTRLCLQYANDKVPTSKRYSGMIDALHKIYSVEG 171 (217)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~~~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G 171 (217)
|.+||.+++.+.+.. ....+....+++|++||++++++++|+|+||+|||++. ...|.++++|+++|+++||
T Consensus 182 f~~ye~~k~~l~~~~-~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~-------~~~y~~~~~~~~~i~~~eG 253 (303)
T 2lck_A 182 LVTYDLIKDTLLKAN-LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSA-------LGQYHSAGHCALTMLRKEG 253 (303)
T ss_dssp HHHHHHHHHTTTTTT-SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-------SSSCCSHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhcc-CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcc-------ccccCCHHHHHHHHHHHcC
Confidence 999999999886543 33456778899999999999999999999999999863 3469999999999999999
Q ss_pred ccccccccccccc-ccccchhhHHhHHHHHHHHhhhc
Q psy3836 172 IRGLYKGFVPGMF-GVSHGAVQFMVYEEMKSHYTQYY 207 (217)
Q Consensus 172 ~~gly~G~~~~~~-~~~~~~~~~~~y~~~~~~~~~~~ 207 (217)
++|||||+.|+++ .+|.+++.|.+||.+++.+.+..
T Consensus 254 ~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~ 290 (303)
T 2lck_A 254 PRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAY 290 (303)
T ss_dssp THHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred hHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999 99999999999999998776544
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.3e-38 Score=255.69 Aligned_cols=194 Identities=22% Similarity=0.354 Sum_probs=167.1
Q ss_pred chhhHHHHHHHhHHHHHHHHhhccHHHHHHHHHhcCCC---CCCCCCCcHHHHHHHHHHhhchhhhcccchhhhhccccc
Q psy3836 11 KNIKYEHLLAGVTGGVTSTLILHPLDLLKIRFAVSDGR---SPNPSYNNLSNAVHTIFRQEGFKGLYKGVTPNIWGSGSA 87 (217)
Q Consensus 11 ~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~~---~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~ 87 (217)
+.+....+++|++|++++.+++||+|+||+|+|++... .....|++.++++++|+++||++|||||+.+++++.++.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 34567899999999999999999999999999998642 123468999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCC---CChHHHHHHHHHHHHhHhhhcccHHHHHHHHhhhccCCCCCCCCCCCcHHHHHH
Q psy3836 88 WGFYFLFYNTIKTWIQQGNTTKP---IGPTMNMVAAAEAGILTLVMTNPVWVVKTRLCLQYANDKVPTSKRYSGMIDALH 164 (217)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~P~~~ik~r~q~~~~~~~~~~~~~~~~~~~~~~ 164 (217)
.+++|++||.+++.+....+... .+....+++|++||+++.++++|+|+||+|+|++.... .....|++++++++
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~--~~~~~~~~~~~~~~ 161 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG--AAQREFTGLGNCIT 161 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS--TTTCSCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC--CcCcCCCCHHHHHH
Confidence 99999999999995433221111 12466889999999999999999999999999975421 12457899999999
Q ss_pred HHHHhhCccccccccccccc-ccccchhhHHhHHHHHHHHhhh
Q psy3836 165 KIYSVEGIRGLYKGFVPGMF-GVSHGAVQFMVYEEMKSHYTQY 206 (217)
Q Consensus 165 ~i~~~~G~~gly~G~~~~~~-~~~~~~~~~~~y~~~~~~~~~~ 206 (217)
+|+++||++|||||+.++++ .+|.+++.|.+||.+++.+.+.
T Consensus 162 ~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~ 204 (297)
T 1okc_A 162 KIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 204 (297)
T ss_dssp HHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG
T ss_pred HHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999 9999999999999999977543
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2e-38 Score=255.98 Aligned_cols=186 Identities=24% Similarity=0.421 Sum_probs=160.0
Q ss_pred hhHHHHHHHhHHHHHHHHhhccHHHHHHHHHhcCCC-CCCCCCCcHHHHHHHHHHhhchhhhcccchhhhhccccchhHH
Q psy3836 13 IKYEHLLAGVTGGVTSTLILHPLDLLKIRFAVSDGR-SPNPSYNNLSNAVHTIFRQEGFKGLYKGVTPNIWGSGSAWGFY 91 (217)
Q Consensus 13 ~~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~~-~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~ 91 (217)
.....+++|++|++++.++++|+|+||+|+|++... .....|++.++++++|+++||++|||||+.+++++.++..+++
T Consensus 111 ~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~ 190 (297)
T 1okc_A 111 YFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAY 190 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHH
Confidence 447789999999999999999999999999998642 2245789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHhHhhhcccHHHHHHHHhhhccCCCCCCCCCCCcHHHHHHHHHHhhC
Q psy3836 92 FLFYNTIKTWIQQGNTTKPIGPTMNMVAAAEAGILTLVMTNPVWVVKTRLCLQYANDKVPTSKRYSGMIDALHKIYSVEG 171 (217)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~~~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G 171 (217)
|.+||.+++.+.+.. ..+....+++|+++|++++++++|+|+||+|||++.... .....|+++++|+++|+++||
T Consensus 191 f~~ye~~k~~~~~~~---~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~--~~~~~y~~~~~~~~~i~~~eG 265 (297)
T 1okc_A 191 FGVYDTAKGMLPDPK---NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRK--GADIMYTGTVDCWRKIAKDEG 265 (297)
T ss_dssp HHHHHHHHHSSCGGG---CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC--GGGCSCSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccCC---CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCC--CCCCCCCCHHHHHHHHHHHcC
Confidence 999999999765432 345778899999999999999999999999999875421 124579999999999999999
Q ss_pred cccccccccccccccccchhhHHhHHHHHHHH
Q psy3836 172 IRGLYKGFVPGMFGVSHGAVQFMVYEEMKSHY 203 (217)
Q Consensus 172 ~~gly~G~~~~~~~~~~~~~~~~~y~~~~~~~ 203 (217)
++|||||+.|+++..+.+++.|.+||.+++.+
T Consensus 266 ~~glyrG~~~~~~r~~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 266 PKAFFKGAWSNVLRGMGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp GGGGGTTHHHHHHHHHHHHHHHHHHHTC----
T ss_pred cCeEecchHHHHHhhccceeeehHHHHHHhhC
Confidence 99999999999994357889999999988753
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.3e-38 Score=256.37 Aligned_cols=187 Identities=25% Similarity=0.421 Sum_probs=168.3
Q ss_pred HHHHHHhHHHHHHHHhhccHHHHHHHHHhcCCCC------CCCCCCcHHHHHHHHHHhhchhhhcccchhhhhccccchh
Q psy3836 16 EHLLAGVTGGVTSTLILHPLDLLKIRFAVSDGRS------PNPSYNNLSNAVHTIFRQEGFKGLYKGVTPNIWGSGSAWG 89 (217)
Q Consensus 16 ~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~~~------~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~ 89 (217)
..+++|++|++++.+++||+|+||+|+|++.... ....|++.++++++|+++||+++||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999986521 1357899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHhHhhhcccHHHHHHHHhhhccCCCCCCCCCCCcHHHHHHHHHHh
Q psy3836 90 FYFLFYNTIKTWIQQGNTTKPIGPTMNMVAAAEAGILTLVMTNPVWVVKTRLCLQYANDKVPTSKRYSGMIDALHKIYSV 169 (217)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~~~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~i~~~ 169 (217)
++|.+||.+++.+.+.. + ..+....+++|+++|+++.++++|+|+||+|+|++... .....|++.++++++|+++
T Consensus 83 i~f~~ye~~k~~~~~~~-~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~---~~~~~~~~~~~~~~~i~~~ 157 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS-E-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA---GGGRRYQSTVEAYKTIARE 157 (303)
T ss_dssp HTTTHHHHHHHHHSCCC-S-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC---CCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-c-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc---CCCCCCCCHHHHHHHHHHh
Confidence 99999999999886542 2 46778899999999999999999999999999997543 1345799999999999999
Q ss_pred hCccccccccccccc-ccccchhhHHhHHHHHHHHhhhc
Q psy3836 170 EGIRGLYKGFVPGMF-GVSHGAVQFMVYEEMKSHYTQYY 207 (217)
Q Consensus 170 ~G~~gly~G~~~~~~-~~~~~~~~~~~y~~~~~~~~~~~ 207 (217)
||++|||||+.++++ .++.+++.|.+||.+++.+.+..
T Consensus 158 eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~ 196 (303)
T 2lck_A 158 EGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN 196 (303)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred cChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999 99999999999999999887654
No 5
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=27.33 E-value=8.8 Score=22.15 Aligned_cols=20 Identities=35% Similarity=0.664 Sum_probs=16.4
Q ss_pred CcHHHHHHHHHHhhchhhhc
Q psy3836 55 NNLSNAVHTIFRQEGFKGLY 74 (217)
Q Consensus 55 ~~~~~~~~~i~~~~G~~~ly 74 (217)
+++...+.+||+.+++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46778888999999988876
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=23.03 E-value=20 Score=22.21 Aligned_cols=41 Identities=7% Similarity=0.158 Sum_probs=28.9
Q ss_pred ccccccccccccc-ccccchhhHHhHHHHHHHHhhhcCCCCC
Q psy3836 172 IRGLYKGFVPGMF-GVSHGAVQFMVYEEMKSHYTQYYDLPLD 212 (217)
Q Consensus 172 ~~gly~G~~~~~~-~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 212 (217)
+...+|-+...++ .+|..++...+|+..++.-.....+++.
T Consensus 34 i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rKnpa 75 (81)
T 3tgu_G 34 LPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKNPA 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCGG
T ss_pred hhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 3334444455667 7888899999999999888776655554
No 7
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=18.88 E-value=2.5e+02 Score=20.11 Aligned_cols=42 Identities=17% Similarity=-0.005 Sum_probs=24.9
Q ss_pred cchhHHHHHHHHHHHHHh-hCC---CCCCCChHHHHHHHHHHHHhH
Q psy3836 86 SAWGFYFLFYNTIKTWIQ-QGN---TTKPIGPTMNMVAAAEAGILT 127 (217)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~a~~~~ 127 (217)
....+.|..||..|.... .-+ ........--+++|+.|+++.
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~ 156 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAAS 156 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHH
Confidence 456678889999885332 211 122334566677777776654
No 8
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=18.14 E-value=30 Score=21.41 Aligned_cols=43 Identities=9% Similarity=0.083 Sum_probs=30.8
Q ss_pred hCccccccccccccc-ccccchhhHHhHHHHHHHHhhhcCCCCC
Q psy3836 170 EGIRGLYKGFVPGMF-GVSHGAVQFMVYEEMKSHYTQYYDLPLD 212 (217)
Q Consensus 170 ~G~~gly~G~~~~~~-~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 212 (217)
+|+...+|-+.-.++ .+|..++...+|+..++.......+++.
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rKnp~ 75 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKNPA 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC-
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 444455666666677 7888899999999999887776655544
No 9
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=17.31 E-value=78 Score=19.26 Aligned_cols=58 Identities=17% Similarity=0.419 Sum_probs=35.6
Q ss_pred CCCCCcHHHHHHHHHHhhCccc----ccccccccc---c-ccccchhhHHhHHHHHHHHhhhcCCC
Q psy3836 153 SKRYSGMIDALHKIYSVEGIRG----LYKGFVPGM---F-GVSHGAVQFMVYEEMKSHYTQYYDLP 210 (217)
Q Consensus 153 ~~~~~~~~~~~~~i~~~~G~~g----ly~G~~~~~---~-~~~~~~~~~~~y~~~~~~~~~~~~~~ 210 (217)
.+++.+.-.-+..++.+.|+.| +|.|+.... + ++...-...-...-+|.++...++-+
T Consensus 5 vpkftsvne~vsavltqygvtgpnraiyqgfglkvaralnr~g~gpalvnminglkayyisafnan 70 (100)
T 3f2e_A 5 VPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARALNRLGGGPALVNMINGLKAYYISAFNAN 70 (100)
T ss_dssp ---CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHCCC
T ss_pred CccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHHHhcCCchHHHHHHhhhhHhhhHhhcCC
Confidence 4556667777778888888765 688887654 4 44444444555566677666666544
No 10
>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*
Probab=16.87 E-value=3.9e+02 Score=21.08 Aligned_cols=68 Identities=9% Similarity=0.114 Sum_probs=44.8
Q ss_pred hhhcccHHHHHHHHhhhccCCCCCCCCCCCcHHHHHHHHHHhhCccccccccccccc-ccccchhhHHh---HHHHHHHH
Q psy3836 128 LVMTNPVWVVKTRLCLQYANDKVPTSKRYSGMIDALHKIYSVEGIRGLYKGFVPGMF-GVSHGAVQFMV---YEEMKSHY 203 (217)
Q Consensus 128 ~~~~~P~~~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~-~~~~~~~~~~~---y~~~~~~~ 203 (217)
.++--|-+.+..+.. -.++.+..+.+++|+.|+-+-+.|.++ ....+...--. .+..-+.+
T Consensus 273 kIlgAP~~mie~q~~---------------esL~tiasLve~~GI~gm~k~LnP~aL~~sA~SM~~~~~q~~L~~aLk~L 337 (358)
T 2b0j_A 273 KILGAPADFAQMMAD---------------EALTQIHNLMKEKGIANMEEALDPAALLGTADSMCFGPLAEILPTALKVL 337 (358)
T ss_dssp TTSCCCHHHHHHHHH---------------HHHHHHHHHHHHHCGGGHHHHSCGGGGGGTGGGGCSGGGTTHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHH---------------HHHHHHHHHHHHhhHHHHHHhcCHHHHHhHHhhcccChhhhhHHHHHHHH
Confidence 455667777655433 256788889999999999999999988 66655554444 23333444
Q ss_pred hhhcCCC
Q psy3836 204 TQYYDLP 210 (217)
Q Consensus 204 ~~~~~~~ 210 (217)
.++.+.+
T Consensus 338 ek~~~~~ 344 (358)
T 2b0j_A 338 EKHKVVE 344 (358)
T ss_dssp HHTCCCC
T ss_pred HHhhhhc
Confidence 4444443
Done!