RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3836
(217 letters)
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 148 bits (376), Expect = 3e-44
Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 6/187 (3%)
Query: 15 YEHLLAGVTGGVTSTLILHPLDLLKIRFAVSDGRSPNPS-YNNLSNAVHTIFRQEGFKGL 73
+L +G G TS ++PLD + R A G+ + L N + IF+ +G +GL
Sbjct: 113 AGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGL 172
Query: 74 YKGVTPNIWGSGSAWGFYFLFYNTIKTWIQQGNTTKPIGPTMNMVAAAEAGILTLVMTNP 133
Y+G ++ G YF Y+T K + ++ + A + +++ P
Sbjct: 173 YQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNV---HIIVSWMIAQTVTAVAGLVSYP 229
Query: 134 VWVVKTRLCLQYANDKVPTSKRYSGMIDALHKIYSVEGIRGLYKGFVPGMFGVSHGAVQF 193
V+ R+ +Q Y+G +D KI EG + +KG + GA
Sbjct: 230 FDTVRRRMMMQSGRKGADI--MYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVL 287
Query: 194 MVYEEMK 200
++Y+E+K
Sbjct: 288 VLYDEIK 294
Score = 141 bits (358), Expect = 1e-41
Identities = 43/208 (20%), Positives = 83/208 (39%), Gaps = 9/208 (4%)
Query: 16 EHLLAGVTGGVTSTLILHPLDLLKIRFAVSDGRSPNPS---YNNLSNAVHTIFRQEGFKG 72
+ LAG S + P++ +K+ V + Y + + V I +++GF
Sbjct: 9 KDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLS 68
Query: 73 LYKGVTPNIWGSGSAWGFYFLFYNTIKTWIQQG---NTTKPIGPTMNMVAAAEAGILTLV 129
++G N+ F F + K G + N+ + AG +L
Sbjct: 69 FWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLC 128
Query: 130 MTNPVWVVKTRLCLQYANDKVPTSKRYSGMIDALHKIYSVEGIRGLYKGFVPGMFGVS-H 188
P+ +TRL K + ++G+ + + KI+ +G+RGLY+GF + G+ +
Sbjct: 129 FVYPLDFARTRLAADVG--KGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIY 186
Query: 189 GAVQFMVYEEMKSHYTQYYDLPLDSKLV 216
A F VY+ K ++ + +
Sbjct: 187 RAAYFGVYDTAKGMLPDPKNVHIIVSWM 214
Score = 70.4 bits (173), Expect = 8e-15
Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 107 TTKPIGPTMNMVAAAEAGILTLVMTNPVWVVKTRLCLQYANDKVPTSKRYSGMIDALHKI 166
+ + + + +A A ++ P+ VK L +Q+A+ ++ K+Y G+ID + +I
Sbjct: 1 SDQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRI 60
Query: 167 YSVEGIRGLYKGFVPGMFGVS-HGAVQFMVYEEMKSHYTQYYD 208
+G ++G + + A+ F ++ K + D
Sbjct: 61 PKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVD 103
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 142 bits (359), Expect = 1e-41
Identities = 58/195 (29%), Positives = 88/195 (45%), Gaps = 11/195 (5%)
Query: 18 LLAGVTGGVTSTLILHPLDLLKIRFAVSDGRSP-NPSYNNLSNAVHTIFRQEGFKGLYKG 76
LLAG T G + + P D++K+RF + R+ Y + A TI R+EG +GL+KG
Sbjct: 108 LLAGSTTGALAVAVAQPTDVVKVRF-QAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKG 166
Query: 77 VTPNIWGSGSAWGFYFLFYNTIKTWIQQGNTTKPIGPTMNMVAAAEAGILTLVMTNPVWV 136
+PN+ + + Y+ IK + + N + +A AG T V+ +PV V
Sbjct: 167 TSPNVARNAIVNCAELVTYDLIKDTLLKANLMTD-DLPCHFTSAFGAGFCTTVIASPVDV 225
Query: 137 VKTRLCLQYANDKVPTSKRYSGMIDALHKIYSVEGIRGLYKGFVPGMFGV-SHGAVQFMV 195
VKTR N + +Y + EG R YKGF+P + S V F+
Sbjct: 226 VKTRY----MNSALG---QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVT 278
Query: 196 YEEMKSHYTQYYDLP 210
YE++K Y
Sbjct: 279 YEQLKRALMAAYQSR 293
Score = 140 bits (355), Expect = 5e-41
Identities = 47/201 (23%), Positives = 81/201 (40%), Gaps = 12/201 (5%)
Query: 17 HLLAGVTGGVTSTLILHPLDLLKIRF------AVSDGRSPNPSYNNLSNAVHTIFRQEGF 70
L T + LI PLD K+R + + Y + + T+ R EG
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 71 KGLYKGVTPNIWGSGSAWGFYFLFYNTIKTWIQQGNTTKPIGPTMNMVAAAEAGILTLVM 130
+ LY G+ + S Y+++K + +G+ IG ++A + G L + +
Sbjct: 64 RSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIG--SRLLAGSTTGALAVAV 121
Query: 131 TNPVWVVKTRLCLQYANDKVPTSKRYSGMIDALHKIYSVEGIRGLYKGFVPGMFGVSHG- 189
P VVK R A + +RY ++A I EGIRGL+KG P + +
Sbjct: 122 AQPTDVVKVRFQ---AQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVN 178
Query: 190 AVQFMVYEEMKSHYTQYYDLP 210
+ + Y+ +K + +
Sbjct: 179 CAELVTYDLIKDTLLKANLMT 199
Score = 72.3 bits (178), Expect = 2e-15
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 114 TMNMVAAAEAGILTLVMTNPVWVVKTRLCLQ---YANDKVPTSKRYSGMIDALHKIYSVE 170
T+ + A A + ++T P+ K RL +Q + S +Y G++ + + E
Sbjct: 2 TVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTE 61
Query: 171 GIRGLYKGFVPGMFG-VSHGAVQFMVYEEMKSHYTQ 205
G R LY G V G+ +S +V+ +Y+ +K YT+
Sbjct: 62 GPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTK 97
Score = 58.1 bits (141), Expect = 2e-10
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 17 HLLAGVTGGVTSTLILHPLDLLKIRFAVSDGRSPNPSYNNLSNAVHTIFRQEGFKGLYKG 76
H + G +T+I P+D++K R+ S Y++ + T+ R+EG + YKG
Sbjct: 205 HFTSAFGAGFCTTVIASPVDVVKTRYM----NSALGQYHSAGHCALTMLRKEGPRAFYKG 260
Query: 77 VTPNIWGSGSAWGFYFLFYNTIKTWIQQGNTTK 109
P+ GS F+ Y +K + ++
Sbjct: 261 FMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSR 293
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.019
Identities = 29/181 (16%), Positives = 54/181 (29%), Gaps = 49/181 (27%)
Query: 38 LKIRFAVSDGRSPNPSYNNL---SNAVHTIFRQEGFKGLYKGVTPNIWGSGSAWGFYFLF 94
L I F G+ +Y+ + + + ++ FK + + T + G
Sbjct: 1672 LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF-RSEK-GLLSAT 1729
Query: 95 YNT-----------IKTWIQQGNTTKPIGPTMNMVA----------AAEAGILTLVMTNP 133
T + +G P A A+ A ++++
Sbjct: 1730 QFTQPALTLMEKAAFEDLKSKGLI-----PADATFAGHSLGEYAALASLADVMSIESL-- 1782
Query: 134 VWVVKTR-LCLQYANDKVPTSKRYSGMI-------------DALHKIYSVEGIRGLYKGF 179
V VV R + +Q A + + GMI +AL + VE +
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV--VERVGKRTGWL 1840
Query: 180 V 180
V
Sbjct: 1841 V 1841
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 2.7
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 11/34 (32%)
Query: 137 VKTRLCLQYANDKVPTSKRYSGMIDALHKIYSVE 170
++ L L YA+D P I A ++E
Sbjct: 25 LQASLKL-YADDSAPALA-----IKA-----TME 47
>2bog_X Endoglucanase E-2; hydrolase, thermobifida fusca, TIM A/B fold,
glycoside hydrolase family 6; HET: MGL SGC BGC; 1.04A
{Thermomonospora fusca} PDB: 2bof_X* 2boe_X* 2bod_X*
1tml_A* 3ru8_X 3rpt_X
Length = 286
Score = 26.6 bits (58), Expect = 6.6
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 100 TWIQQGNTTKPIGPTMNMVAAAEAGILTLVMTNPVWVVKTRLCLQYANDKVPTSKRYSGM 159
TW N + G +++AA+A ++ V R C +++ P+ Y
Sbjct: 40 TWFAHHNPGQITGQVDALMSAAQAAGKIPILV--VSNAPGRDCGNHSSGGAPSHSAYRSW 97
Query: 160 IDALHKIYS 168
ID
Sbjct: 98 IDEFAAGLK 106
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted
protein; 2.00A {Streptococcus mutans}
Length = 182
Score = 26.0 bits (58), Expect = 7.7
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 4/22 (18%)
Query: 56 NLSNAVHTI----FRQEGFKGL 73
NLSN V I RQ+ F GL
Sbjct: 149 NLSNTVCMIVYEALRQQDFIGL 170
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.423
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,398,621
Number of extensions: 196800
Number of successful extensions: 346
Number of sequences better than 10.0: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 17
Length of query: 217
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 127
Effective length of database: 4,188,903
Effective search space: 531990681
Effective search space used: 531990681
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)