RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3836
(217 letters)
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
heart isoform t1 [TaxId: 9913]}
Length = 292
Score = 92.9 bits (229), Expect = 2e-23
Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 6/184 (3%)
Query: 17 HLLAGVTGGVTSTLILHPLDLLKIR-FAVSDGRSPNPSYNNLSNAVHTIFRQEGFKGLYK 75
+L +G G TS ++PLD + R A + + L N + IF+ +G +GLY+
Sbjct: 114 NLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQ 173
Query: 76 GVTPNIWGSGSAWGFYFLFYNTIKTWIQQGNTTKPIGPTMNMVAAAEAGILTLVMTNPVW 135
G ++ G YF Y+T K + I M + +++ P
Sbjct: 174 GFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTV---TAVAGLVSYPFD 230
Query: 136 VVKTRLCLQYANDKVPTSKRYSGMIDALHKIYSVEGIRGLYKGFVPGMFGVSHGAVQFMV 195
V+ R+ +Q + + Y+G +D KI EG + +KG + GA ++
Sbjct: 231 TVRRRMMMQ--SGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVL 288
Query: 196 YEEM 199
Y+E+
Sbjct: 289 YDEI 292
Score = 83.6 bits (205), Expect = 6e-20
Identities = 38/198 (19%), Positives = 73/198 (36%), Gaps = 8/198 (4%)
Query: 16 EHLLAGVTGGVTSTLILHPLDLLKIRFAVSDG---RSPNPSYNNLSNAVHTIFRQEGFKG 72
+ LAG S + P++ +K+ V S Y + + V I +++GF
Sbjct: 8 KDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLS 67
Query: 73 LYKGVTPNIWGSGSAWGFYFLFYNTIKTWIQ---QGNTTKPIGPTMNMVAAAEAGILTLV 129
++G N+ F F + K + N+ + AG +L
Sbjct: 68 FWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLC 127
Query: 130 MTNPVWVVKTRLCLQYANDKVPTSKRYSGMIDALHKIYSVEGIRGLYKGFVPGMFGVSHG 189
P+ +TRL K + ++G+ + + KI+ +G+RGLY+GF + G+
Sbjct: 128 FVYPLDFARTRLAADV--GKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIY 185
Query: 190 AVQFMVYEEMKSHYTQYY 207
+ +
Sbjct: 186 RAAYFGVYDTAKGMLPDP 203
Score = 52.0 bits (123), Expect = 9e-09
Identities = 16/95 (16%), Positives = 40/95 (42%)
Query: 109 KPIGPTMNMVAAAEAGILTLVMTNPVWVVKTRLCLQYANDKVPTSKRYSGMIDALHKIYS 168
+ + + +A A ++ P+ VK L +Q+A+ ++ K+Y G+ID + +I
Sbjct: 2 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPK 61
Query: 169 VEGIRGLYKGFVPGMFGVSHGAVQFMVYEEMKSHY 203
+G ++G + + +++
Sbjct: 62 EQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQI 96
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli
[TaxId: 562]}
Length = 385
Score = 33.1 bits (74), Expect = 0.019
Identities = 22/155 (14%), Positives = 44/155 (28%), Gaps = 12/155 (7%)
Query: 5 KAPDLLKNIKYEHLLAGVTGGVTSTL-----ILHPLDLLKIRFAVSDGRSPNPSYNNLSN 59
D +K Y+ L VT + +D + +A+ DG PNP+ +
Sbjct: 20 ALTDEVKRRGYQKALI-VTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKE 78
Query: 60 AVHTIFRQEGFKGLYKGVTPNIWGSGS-----AWGFYFLFYNTIKTWIQQGNTTKPIGPT 114
+ G L + + + F +++ + PI
Sbjct: 79 GLGVFQNS-GADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAI 137
Query: 115 MNMVAAAEAGILTLVMTNPVWVVKTRLCLQYANDK 149
A + V+T+ K + +
Sbjct: 138 PTTAGTAAEVTINYVITDEEKRRKFVCVDPHDIPQ 172
>d2bodx1 c.6.1.1 (X:2-286) Cellulase E2 {Thermomonospora fusca,
strain yx [TaxId: 2021]}
Length = 285
Score = 27.9 bits (62), Expect = 0.77
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 100 TWIQQGNTTKPIGPTMNMVAAAEAGILTLVMTNPVWVVKTRLCLQYANDKVPTSKRYSGM 159
TW N + G +++AA+A ++ V+ R C +++ P+ Y
Sbjct: 39 TWFAHHNPGQITGQVDALMSAAQAAGKIPILV--VYNAPGRDCGNHSSGGAPSHSAYRSW 96
Query: 160 IDALHKIYS 168
ID
Sbjct: 97 IDEFAAGLK 105
>d1vl1a_ c.124.1.1 (A:) 6-phosphogluconolactonase {Thermotoga
maritima [TaxId: 2336]}
Length = 218
Score = 26.8 bits (58), Expect = 1.7
Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 4/85 (4%)
Query: 39 KIRFAVSDGRSPNPSYNNLSNAVHTIFRQEGFKGLYKGVTPNIWGSGSAWGFYFLFYNTI 98
KI ++ GR+P P Y L+ R F + V + S LF
Sbjct: 32 KIFVVLAGGRTPLPVYEKLAEQKFPWNRIHFFLSDERYVPLDSDQSNFRNINEVLFSR-- 89
Query: 99 KTWIQQGNTTKPIGPTMNMVAAAEA 123
+ ++ + A E
Sbjct: 90 --AKIPSGNVHYVDTSLPIEKACEK 112
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit
VIc {Cow (Bos taurus) [TaxId: 9913]}
Length = 73
Score = 25.4 bits (56), Expect = 1.7
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 173 RGLYKGF----VPGMFGVSHG---AVQFMVYEEMKSHYTQYY 207
RGL + G F VS G +F V E+ K Y +Y
Sbjct: 10 RGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFY 51
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A
(TM0820) {Thermotoga maritima [TaxId: 2336]}
Length = 398
Score = 26.2 bits (56), Expect = 3.9
Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 7/148 (4%)
Query: 5 KAPDLLKNIKYEHLLAGVTGGVTSTL-----ILHPLDLLKIRFAVSDGRSPNPSYNNLSN 59
K + +KN +L GG ++ L I + G PNP + +
Sbjct: 24 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHE 83
Query: 60 AVHTIFRQEGFKGLYKGVTPNIWGSGSAWGFYFLFYNTIKTWIQQGNTTK--PIGPTMNM 117
AV +++ L G + + + + +I + K PI + +
Sbjct: 84 AVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTI 143
Query: 118 VAAAEAGILTLVMTNPVWVVKTRLCLQY 145
A V+TN K + +
Sbjct: 144 SATGTEMNGNAVITNEKTKEKYGVSSKA 171
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
{Escherichia coli [TaxId: 562]}
Length = 197
Score = 25.4 bits (54), Expect = 5.8
Identities = 20/170 (11%), Positives = 46/170 (27%), Gaps = 8/170 (4%)
Query: 8 DLLKNIKYEHLLAGVTGGVTSTLILHPLDLLKIRFAVSDGRSPNPSYNNLSNAVHTIFRQ 67
+ + + + ++ G++GGV S++ L + N + V +F
Sbjct: 13 RIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDMFGD 72
Query: 68 EGFKGLYKGVTPNIWGSGSAWGFYFLFYNTIKTWIQQGNTTKPIGPTMNMVAAAEAGILT 127
+ + + ++ + + A +
Sbjct: 73 HFGLNIVHVPAEDRF--------LSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKW 124
Query: 128 LVMTNPVWVVKTRLCLQYANDKVPTSKRYSGMIDALHKIYSVEGIRGLYK 177
L V V S G + K+ VE ++ L+K
Sbjct: 125 LAQGTIYPDVIESAASATGKAHVIKSHHNVGGLPKEMKMGLVEPLKELFK 174
>d2slia2 b.68.1.1 (A:277-759) Leech intramolecular trans-sialidase,
C-terminal domain {North american leech (Macrobdella
decora) [TaxId: 6405]}
Length = 483
Score = 25.4 bits (54), Expect = 6.0
Identities = 13/84 (15%), Positives = 30/84 (35%)
Query: 5 KAPDLLKNIKYEHLLAGVTGGVTSTLILHPLDLLKIRFAVSDGRSPNPSYNNLSNAVHTI 64
+ D + +++ V+ L++ P +I + GR P Y+ S + +
Sbjct: 236 YSDDEGASWSDLDIVSSFKPEVSKFLVVGPGIGKQISTGENAGRLLVPLYSKSSAELGFM 295
Query: 65 FRQEGFKGLYKGVTPNIWGSGSAW 88
+ + N+ G +A
Sbjct: 296 YSDDHGDNWTYVEADNLTGGATAE 319
>d1f00i3 d.169.1.3 (I:842-939) Intimin {Escherichia coli [TaxId:
562]}
Length = 98
Score = 24.1 bits (52), Expect = 6.7
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 80 NIWGSGSAWGFYFLFYNTIKTWIQQGNTTKPIG 112
WG+ + + +Y TI +W+QQ G
Sbjct: 38 KAWGAANKYEYYKS-SQTIISWVQQTAQDAKSG 69
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
niger [TaxId: 5061]}
Length = 385
Score = 25.2 bits (54), Expect = 7.9
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 158 GMIDALHKIYSVEGIRGLYKGFVPGMFGVSHGAVQFMVYEE 198
G++D ++Y V+G+R + P V + + +
Sbjct: 332 GVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALK 372
>d1twya_ c.94.1.1 (A:) ABC transporter, periplasmic
substrate-binding protein VCA0807 {Vibrio cholerae
[TaxId: 666]}
Length = 249
Score = 24.6 bits (52), Expect = 9.3
Identities = 6/34 (17%), Positives = 9/34 (26%)
Query: 68 EGFKGLYKGVTPNIWGSGSAWGFYFLFYNTIKTW 101
E + + + G GS G L
Sbjct: 20 EKYNQQHPETYVAVQGVGSTAGISLLKKGVADIA 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.423
Gapped
Lambda K H
0.267 0.0403 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 828,557
Number of extensions: 37743
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 13
Length of query: 217
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 135
Effective length of database: 1,281,736
Effective search space: 173034360
Effective search space used: 173034360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)