BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3837
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KZ4|A Chain A, Crystal Structure Of The Rotavirus Double Layered
Particle
pdb|3KZ4|B Chain B, Crystal Structure Of The Rotavirus Double Layered
Particle
pdb|4F5X|A Chain A, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|B Chain B, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 880
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 11 QEAEVSKRRRDWAFSERDKIVLERESIRTLCDKLRKERDRAVSDLAEALRDSDNIKKQKN 70
+EA ++ R E+D ++ + L DK+ +++ V+D E ++ +D +KK
Sbjct: 10 REANINNNDR---MQEKDDEKQDQNNRMQLSDKVLSKKEEVVTDSQEEIKIADEVKKSTK 66
Query: 71 ETSKE-LKVLKEKMEAQVELE 90
E SK+ L+VLK K E Q E++
Sbjct: 67 EESKQLLEVLKTKEEHQKEIQ 87
>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse
Plectin
pdb|1SH5|B Chain B, Crystal Structure Of Actin-Binding Domain Of Mouse
Plectin
pdb|1SH6|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse
Plectin
Length = 245
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 24 FSERDKI---VLERESIRTLCDKLRKERDRAVSDLAEALRDSDNI 65
F ERD++ + + L R E R +SDL E LRD N+
Sbjct: 6 FDERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNL 50
>pdb|1URJ|A Chain A, Single Stranded Dna-Binding Protein(Icp8) From Herpes
Simplex Virus-1
pdb|1URJ|B Chain B, Single Stranded Dna-Binding Protein(Icp8) From Herpes
Simplex Virus-1
Length = 1136
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 23 AFSERDKIVLERESIRTLCDKLRKERDRAVSDLAEALRDSDNIK 66
A + I+ RE++ T+ + +R+ DR V L L + N K
Sbjct: 599 AMGRLETIITNREALHTVVNNVRQVVDREVEQLMRNLVEGRNFK 642
>pdb|3OA5|A Chain A, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
pdb|3OA5|B Chain B, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
Length = 574
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 19 RRDWAFSERDKIVLERESIRTLCDKLRKERDRAVSDLAEALRDSDN 64
+ D+ +SE K+ + ++ R++ DK R +D+ + L D DN
Sbjct: 479 KADYLYSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDN 524
>pdb|1N5D|A Chain A, Crystal Structure Of Porcine Testicular Carbonyl
Reductase 20beta-Hydroxysteroid Dehydrogenase
Length = 288
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 31 VLERESIRTLCDKLRKE 47
+++ +SIR LCD LRKE
Sbjct: 63 IIDLQSIRALCDFLRKE 79
>pdb|4A5Q|A Chain A, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|B Chain B, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|C Chain C, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|D Chain D, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|E Chain E, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
Length = 546
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 19 RRDWAFSERDKIVLERESIRTLCDKLRKERDRAVSDLAEALRDSDN 64
+ D+ +SE K+ + ++ R++ DK R +D+ + L D DN
Sbjct: 451 KADYLYSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDN 496
>pdb|2E7V|A Chain A, Crystal Structure Of Sea Domain Of Transmembrane
Protease From Mus Musculus
Length = 121
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 32 LERESIRTLCDKLRKERDRAVSDLAEALRDS 62
L+ E IRT KLRKE V+D+ R S
Sbjct: 50 LKSEFIRTHVVKLRKEGTGVVADVVMKFRSS 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.126 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,103,698
Number of Sequences: 62578
Number of extensions: 62546
Number of successful extensions: 337
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 312
Number of HSP's gapped (non-prelim): 50
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)