BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3837
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8TDM6|DLG5_HUMAN Disks large homolog 5 OS=Homo sapiens GN=DLG5 PE=1 SV=4
Length = 1919
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 77/90 (85%), Gaps = 2/90 (2%)
Query: 3 SVCCE--ESIQEAEVSKRRRDWAFSERDKIVLERESIRTLCDKLRKERDRAVSDLAEALR 60
++C E E++QEA+V+K RRDWAF ERDKIV ER+SIRTLCD LR+ERDRAVS+LAEALR
Sbjct: 504 ALCQELKEALQEADVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALR 563
Query: 61 DSDNIKKQKNETSKELKVLKEKMEAQVELE 90
D+ +KQKN+ S+ELK LKE+ME+Q+E E
Sbjct: 564 SLDDTRKQKNDVSRELKELKEQMESQLEKE 593
>sp|B1NKR0|VP2_ROTH7 Inner capsid protein VP2 OS=Rotavirus A (isolate Human/United
Kingdom/A64/1987
G10-P11[14]-I2-R2-C2-M1-A3-N2-T6-E2-H3) PE=3 SV=1
Length = 880
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 11 QEAEVSKRRRDWAFSERDKIVLERESIRTLCDKLRKERDRAVSDLAEALRDSDNIKKQKN 70
+EA V+ R E+D ++ S L DK+ +++ ++D E ++ +D +KK
Sbjct: 10 REANVNNNDR---MQEKDDEKQDQNSKMQLSDKVLSKKEEVITDNQEEVKIADEVKKSTK 66
Query: 71 ETSKE-LKVLKEKMEAQVELE 90
E SK+ L+VLK K E Q E++
Sbjct: 67 EESKQLLEVLKTKEEHQKEIQ 87
>sp|P12472|VP2_ROTRF Inner capsid protein VP2 OS=Rotavirus A (strain
Cow/France/RF/1975 G6-P6[1]-I2-R2-C2-M2-A3-N2-T6-E2-H3)
PE=1 SV=1
Length = 880
Score = 36.2 bits (82), Expect = 0.054, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 11 QEAEVSKRRRDWAFSERDKIVLERESIRTLCDKLRKERDRAVSDLAEALRDSDNIKKQKN 70
+EA ++ R E+D ++ + L DK+ +++ V+D E ++ +D +KK
Sbjct: 10 REANINNNDR---MQEKDDEKQDQNNRMQLSDKVLSKKEEVVTDSQEEIKIADEVKKSTK 66
Query: 71 ETSKE-LKVLKEKMEAQVELE 90
E SK+ L+VLK K E Q E++
Sbjct: 67 EESKQLLEVLKTKEEHQKEIQ 87
>sp|Q3ZK56|VP2_ROT41 Inner capsid protein VP2 OS=Rotavirus A (isolate
Human/Belgium/B4106/2000
G3-P11[14]-I2-R2-C2-M3-A9-N2-T6-E5-H3) PE=3 SV=1
Length = 880
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 11 QEAEVSKRRRDWAFSERDKIVLERESIRTLCDKLRKERDRAVSDLAEALRDSDNIKKQKN 70
+EA V+ R E+D ++ S L DK+ +++ ++D E ++ +D +KK
Sbjct: 10 REANVNNNDR---MQEKDVEKQDQNSKTQLSDKVLSKKEEIITDNQEEVKIADEVKKSTK 66
Query: 71 ETSKE-LKVLKEKMEAQVELE 90
E SK+ L+VLK K E Q E++
Sbjct: 67 EESKQLLEVLKTKEEHQKEIQ 87
>sp|B1NKQ6|VP2_ROTH6 Inner capsid protein VP2 OS=Rotavirus A (strain
Human/Indonesia/69M/1980
G8-P4[10]-I2-R2-C2-M2-A2-N2-T2-E2-H2) PE=3 SV=1
Length = 880
Score = 36.2 bits (82), Expect = 0.063, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 11 QEAEVSKRRRDWAFSERDKIVLERESIRTLCDKLRKERDRAVSDLAEALRDSDNIKKQKN 70
+EA V+ R E+D ++ + L DK+ +++ ++D E ++ +D +KK
Sbjct: 10 REANVNNNNR---MQEKDNEKQDQNNKIQLSDKVLSKKEEVITDNQEEIKIADEVKKSTK 66
Query: 71 ETSKE-LKVLKEKMEAQVELE 90
E SK+ L+VLK K E Q E++
Sbjct: 67 EESKQLLEVLKTKEEHQKEIQ 87
>sp|B2BMF8|VP2_ROTW3 Inner capsid protein VP2 OS=Rotavirus A (strain Cow/United
States/WC3/1981 G6-P7[5]-I2-R2-C2-M2-A3-N2-T6-E2-H3)
PE=3 SV=1
Length = 880
Score = 35.8 bits (81), Expect = 0.069, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 11 QEAEVSKRRRDWAFSERDKIVLERESIRTLCDKLRKERDRAVSDLAEALRDSDNIKKQKN 70
+EA ++ R E+D ++ + L DK+ +++ V+D E ++ +D +KK
Sbjct: 10 REANINNNDR---MQEKDDEKQDQNNRMQLSDKVLSKKEEVVTDNQEEIKIADEVKKSTK 66
Query: 71 ETSKE-LKVLKEKMEAQVELE 90
E SK+ L+VLK K E Q E++
Sbjct: 67 EESKQLLEVLKTKEEHQKEIQ 87
>sp|P17462|VP2_ROTBU Inner capsid protein VP2 OS=Rotavirus A (strain Cow/United
Kingdom/UK/1975 G6-P7[5]-I2-R2-C2-M2-A3-N2-T7-E2-H3)
PE=1 SV=1
Length = 881
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 12 EAEVSKRRRDWAFSERDKIVLERESIRTLCDKLRKERDRAVSDLAEALRDSDNIKKQKNE 71
EA+++ R E+D ++ + L DK+ +++ V+D E ++ D +KK E
Sbjct: 11 EADINNNDR---MQEKDDEKQDQNNRMQLSDKVLSKKEEVVTDSQEEIKIRDEVKKSTKE 67
Query: 72 TSKE-LKVLKEKMEAQVELE 90
SK+ L+VLK K E Q E++
Sbjct: 68 ESKQLLEVLKTKEEHQKEIQ 87
>sp|Q64560|TPP2_RAT Tripeptidyl-peptidase 2 OS=Rattus norvegicus GN=Tpp2 PE=2 SV=3
Length = 1249
Score = 35.8 bits (81), Expect = 0.085, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 38 RTLCDKLRKERDRAVSD------LAEALRDSDNIKKQKNETSKELKVLKEKMEAQVEL 89
+ L ++++KER + D LAEA R + N +S+ K++KE++++QVEL
Sbjct: 123 KALKERIQKERKEKIWDPIHRVALAEACRKQEEFDIANNGSSQANKLIKEELQSQVEL 180
>sp|A7J399|VP2_ROTBN Inner capsid protein VP2 OS=Rotavirus A (strain Cow/United
States/NCDV-Lincoln/1969
G6-P6[1]-I2-R2-C2-M2-Ax-N2-T6-E2-Hx) PE=3 SV=1
Length = 880
Score = 35.8 bits (81), Expect = 0.089, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 11 QEAEVSKRRRDWAFSERDKIVLERESIRTLCDKLRKERDRAVSDLAEALRDSDNIKKQKN 70
+EA ++ R E+D ++ + L DK+ +++ V+D E ++ +D +KK
Sbjct: 10 REANINNNDR---MQEKDDEKQDQNNRIQLSDKVLSKKEEVVTDSQEEIKIADEVKKSTK 66
Query: 71 ETSKE-LKVLKEKMEAQVELE 90
E SK+ L+VLK K E Q E++
Sbjct: 67 EESKQLLEVLKTKEEHQKEIQ 87
>sp|P29144|TPP2_HUMAN Tripeptidyl-peptidase 2 OS=Homo sapiens GN=TPP2 PE=1 SV=4
Length = 1249
Score = 35.8 bits (81), Expect = 0.089, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 38 RTLCDKLRKERDRAVSD------LAEALRDSDNIKKQKNETSKELKVLKEKMEAQVEL 89
+ L ++++KER + D LAEA R + N +S+ K++KE++++QVEL
Sbjct: 123 KALKERIQKERKEKIWDPVHRVALAEACRKQEEFDVANNGSSQANKLIKEELQSQVEL 180
>sp|Q64514|TPP2_MOUSE Tripeptidyl-peptidase 2 OS=Mus musculus GN=Tpp2 PE=2 SV=3
Length = 1262
Score = 35.4 bits (80), Expect = 0.098, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 38 RTLCDKLRKERDRAVSD------LAEALRDSDNIKKQKNETSKELKVLKEKMEAQVEL 89
+ L ++++KER + D LAEA R + N +S+ K++KE++++QVEL
Sbjct: 123 KALKERIQKERKEKIWDPIHRVALAEACRKQEEFDIANNGSSQANKLIKEELQSQVEL 180
>sp|A7J391|VP2_ROTHS Inner capsid protein VP2 OS=Rotavirus A (strain
Human/Japan/S2/1980
G2-P1B[4]-I2-R2-C2-M2-Ax-Nx-T2-E2-Hx) PE=3 SV=1
Length = 879
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 40 LCDKLRKERDRAVSDLAEALRDSDNIKKQKNETSKE-LKVLKEKMEAQVELE 90
L DK+ +++ V+D E ++ +D +KK E SK+ L+VLK K E Q E++
Sbjct: 35 LSDKVLSKKEEVVTDSHEEVKITDEVKKSTKEESKQLLEVLKTKEEHQKEIQ 86
>sp|A5PK39|TPP2_BOVIN Tripeptidyl-peptidase 2 OS=Bos taurus GN=TPP2 PE=2 SV=1
Length = 1249
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 38 RTLCDKLRKERDRAVSD------LAEALRDSDNIKKQKNETSKELKVLKEKMEAQVEL 89
+ L ++++KER + D LAEA R + N S+ K++KE++ +QVEL
Sbjct: 123 KALKERIQKERKEKIWDPVHRAALAEACRKQEEFDVANNCPSQANKLIKEELHSQVEL 180
>sp|A3DSK6|VP2_ROTHL Inner capsid protein VP2 OS=Rotavirus A (strain
Human/Philippines/L26/1987
G12-P1B[4]-I2-R2-C2-M1/M2-A2-N1-T2-E2-H1) PE=3 SV=1
Length = 879
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 40 LCDKLRKERDRAVSDLAEALRDSDNIKKQKNETSKE-LKVLKEKMEAQVELE 90
L DK+ +++ V+D E ++ +D KK E SK+ L+VLK K E Q E++
Sbjct: 35 LSDKVLSKKEEVVTDSHEEVKITDEAKKSTKEESKQLLEVLKTKEEHQKEIQ 86
>sp|Q9CRC8|LRC40_MOUSE Leucine-rich repeat-containing protein 40 OS=Mus musculus GN=Lrrc40
PE=2 SV=2
Length = 602
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 7 EESIQEAEVSKRRRDWAFSERDKIVLERESIRTLCDKLR--------KERDRAVSDLAEA 58
EE+ Q S R W ++ K+++ +++L D LR D ++ L A
Sbjct: 64 EEANQNLSFSSTERWWDQTDLTKLIISSNKLQSLSDDLRLLPALTVLDIHDNQLTSLPSA 123
Query: 59 LRDSDNIKKQKNETSKELKVLKEKMEA 85
+R+ DN++K N + +LK+L E++ +
Sbjct: 124 IRELDNLQKL-NVSHNKLKILPEEITS 149
>sp|A4ZCW5|VP2_ROTH3 Inner capsid protein VP2 OS=Rotavirus A (strain
Human/Japan/AU-1/1982
G3-P3[9]-I3-R3-C3-M3-A3-N3-T3-E3-H3) PE=3 SV=1
Length = 887
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 40 LCDKLRKERDRAVSDLAEALRDSDNIKKQKNETSKE-LKVLKEKMEAQVELE 90
L +K+ +++ ++D E R +D +KK E SK+ L+VLK K E Q E++
Sbjct: 43 LSEKVLSQKEEVITDNQEETRIADEVKKSNKEESKQLLEVLKTKEEHQKEVQ 94
>sp|A7J3A3|VP2_ROTYO Inner capsid protein VP2 OS=Rotavirus A (strain
Human/Japan/YO/1977
G3-P1A[8]-I1-R1-C1-M1-Ax-Nx-Tx-E1-Hx) PE=3 SV=1
Length = 890
Score = 32.3 bits (72), Expect = 0.90, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 38 RTLCDKLRKERDRAVSDLAEALRDSDNIKKQKNETSKE-LKVLKEKMEAQVELE 90
+ L DK+ +++ ++D+ + ++ +D +KK E SK+ L++LK K + Q E++
Sbjct: 42 QQLSDKVLSQKEEIITDVQDDIKIADEVKKSSKEESKQLLEILKTKEDHQKEVQ 95
>sp|B1NKT0|VP2_ROTHP Inner capsid protein VP2 OS=Rotavirus A (strain Human/United
States/P/1974 G3-P1A[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1) PE=3
SV=1
Length = 896
Score = 32.3 bits (72), Expect = 0.90, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 38 RTLCDKLRKERDRAVSDLAEALRDSDNIKKQKNETSKE-LKVLKEKMEAQVELE 90
+ L DK+ +++ ++D+ + ++ +D +KK E SK+ L++LK K + Q E++
Sbjct: 48 QQLSDKVLSQKEEIITDVQDDIKIADEVKKSSKEESKQLLEILKTKEDHQKEVQ 101
>sp|B1NKT8|VP2_ROTHT Inner capsid protein VP2 OS=Rotavirus A (strain Human/United
Kingdom/ST3/1975 G4-P2A[6]-I1-R1-C1-M1-A1-N1-T1-E1-H1)
PE=3 SV=1
Length = 890
Score = 32.3 bits (72), Expect = 0.94, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 38 RTLCDKLRKERDRAVSDLAEALRDSDNIKKQKNETSKE-LKVLKEKMEAQVELE 90
+ L DK+ +++ ++D+ + ++ +D +KK E SK+ L++LK K + Q E++
Sbjct: 42 QQLSDKVLSQKEEIITDVQDDIKIADEVKKSSKEESKQLLEILKTKEDHQKEVQ 95
>sp|A0JP75|EFC4A_XENTR EF-hand calcium-binding domain-containing protein 4A OS=Xenopus
tropicalis GN=efcab4a PE=2 SV=1
Length = 256
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 15/78 (19%)
Query: 29 KIVLERESIRTLCDKLRKERDRAVSDLAEAL-------RDSDN--------IKKQKNETS 73
+I E + IR L +LRKER +S E L RD + +K+++ +
Sbjct: 153 RIFQEHKEIRDLWSRLRKERPELLSHFEEFLYRVSSYIRDVHHEKDTLEQALKRKETDHG 212
Query: 74 KELKVLKEKMEAQVELER 91
+E++ L E+ME Q+++ER
Sbjct: 213 REVRCLYEEMEQQIKIER 230
>sp|B1NKU2|VP2_ROTWI Inner capsid protein VP2 OS=Rotavirus A (isolate Human/United
States/WI61/1983 G9-P1A[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1)
PE=3 SV=1
Length = 890
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 38 RTLCDKLRKERDRAVSDLAEALRDSDNIKKQKNETSKE-LKVLKEKMEAQVELE 90
+ L DK+ +++ ++D+ + ++ D +KK E SK+ L++LK K + Q E++
Sbjct: 42 QQLSDKVLSQKEEIITDVQDDIKIVDEVKKSSKEESKQLLEILKTKEDHQKEVQ 95
>sp|Q21K22|SYS_SACD2 Serine--tRNA ligase OS=Saccharophagus degradans (strain 2-40 / ATCC
43961 / DSM 17024) GN=serS PE=3 SV=1
Length = 426
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Query: 34 RESIRTLCDKLRKERDR----------AVSDLAEALRDSDNIKKQKNETSKELKVLKEKM 83
R +++T C+ L++ER+ A D+ L++ DN+K E + L+ L+ ++
Sbjct: 37 RRTLQTACESLQQERNTRSKNIGKAKAAGEDIGPLLQEVDNLKSALAEAEQNLQALQGEL 96
Query: 84 EAQV 87
EA V
Sbjct: 97 EALV 100
>sp|P72929|Y1021_SYNY3 Uncharacterized protein sll1021 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1021 PE=4 SV=1
Length = 673
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 5 CCEESIQEAEVSKRRRDWAFSERDKIVLERESIRTLCDKLRKERDRAVSDLAEALRDSDN 64
E+++ E +V +RRR A S R LE ESIRTL D R + A ++ +A+ ++ N
Sbjct: 488 IAEQNVVEIDVFRRRRQ-AESARQAAELEAESIRTLADANR-HKAMAEAEGQKAIIEAHN 545
Query: 65 IKKQKNETSKELKVL 79
N T++ LK +
Sbjct: 546 SLSNANRTAELLKTI 560
>sp|Q9H9A6|LRC40_HUMAN Leucine-rich repeat-containing protein 40 OS=Homo sapiens GN=LRRC40
PE=1 SV=1
Length = 602
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 7 EESIQEAEVSKRRRDWAFSERDKIVLERESIRTLCDKLRKE--------RDRAVSDLAEA 58
EE+ Q R W ++ K+++ +++L D LR D ++ L A
Sbjct: 64 EEANQNLSFGATERWWEQTDLTKLIISNNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSA 123
Query: 59 LRDSDNIKKQKNETSKELKVLKEKM 83
+R+ +N++K N + +LK+L E++
Sbjct: 124 IRELENLQKL-NVSHNKLKILPEEI 147
>sp|Q5RFE9|LRC40_PONAB Leucine-rich repeat-containing protein 40 OS=Pongo abelii GN=LRRC40
PE=2 SV=1
Length = 602
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 7 EESIQEAEVSKRRRDWAFSERDKIVLERESIRTLCDKLRKE--------RDRAVSDLAEA 58
EE+ Q R W ++ K+++ +++L D LR D ++ L A
Sbjct: 64 EEANQNLSFGATERWWEQTDLTKLIISNNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSA 123
Query: 59 LRDSDNIKKQKNETSKELKVLKEKM 83
+R+ N++K N + +LK+L E++
Sbjct: 124 IRELQNLQKL-NVSHNKLKILPEEI 147
>sp|P11231|VP2_ROTHW Inner capsid protein VP2 OS=Rotavirus A (strain Human/United
States/Wa/1974 G1-P1A[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1)
PE=3 SV=1
Length = 890
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 38 RTLCDKLRKERDRAVSDLAEALRDSDNIKKQKNETSKE-LKVLKEKMEAQVELE 90
+ L DK+ +++ ++D + ++ + IKK E SK+ L++LK K + Q E++
Sbjct: 42 QQLSDKVLSQKEEIITDAQDDIKIAGEIKKSSKEESKQLLEILKTKEDHQKEIQ 95
>sp|B1NKR4|VP2_ROTAD Inner capsid protein VP2 OS=Rotavirus A (strain Human/United
States/D/1974 G1-P1A[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1)
PE=3 SV=1
Length = 890
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 38 RTLCDKLRKERDRAVSDLAEALRDSDNIKKQKNETSKE-LKVLKEKMEAQVELE 90
+ L DK+ +++ ++D + ++ + IKK E SK+ L++LK K + Q E++
Sbjct: 42 QQLSDKVLSQKEEIITDAQDDIKIAGEIKKSSKEESKQLLEILKTKEDHQKEIQ 95
>sp|P30721|DNAK_CLOAB Chaperone protein DnaK OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=dnaK PE=2 SV=3
Length = 615
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 2 ISVCCEESIQEAEVSKRRRDW-AFSERDKIVLERESIRTLCDKLRKERDRAVSDLAEAL- 59
I++ ++ + E+ K +D F+E DK E ++ D++ + D+A+ DL + +
Sbjct: 471 ITITASTNLSDEEIDKAVKDAEKFAEEDKKKKENIEVKNNADQIVFQTDKALKDLGDKVS 530
Query: 60 -RDSDNIKKQKNETSK 74
D NI+ +K SK
Sbjct: 531 AEDKSNIEAKKEALSK 546
>sp|A0MZ67|SHOT1_RAT Shootin-1 OS=Rattus norvegicus PE=1 SV=1
Length = 633
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 20 RDWAFSERDKIVLERESIRTLCDKLRKERDRAVSDLAE 57
++ A E + + E + + CDK+R+ERD AV L E
Sbjct: 17 KEQAIGEYEDLRAENQKTKETCDKIRQERDEAVKKLEE 54
>sp|Q4R3P6|LRC40_MACFA Leucine-rich repeat-containing protein 40 OS=Macaca fascicularis
GN=LRRC40 PE=2 SV=1
Length = 602
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 7 EESIQEAEVSKRRRDWAFSERDKIVLERESIRTLCDKLRKE--------RDRAVSDLAEA 58
EE+ Q R W ++ K+++ +++L D LR D ++ L A
Sbjct: 64 EEANQNLSFGATERWWEQTDLTKLIISNNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSA 123
Query: 59 LRDSDNIKKQKNETSKELKVLKEKM 83
+R+ +N++K N + +LK+ E++
Sbjct: 124 MRELENLQKL-NVSHNKLKIFPEEI 147
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.126 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,176,285
Number of Sequences: 539616
Number of extensions: 927622
Number of successful extensions: 8765
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 357
Number of HSP's that attempted gapping in prelim test: 7927
Number of HSP's gapped (non-prelim): 1158
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)