Query psy3837
Match_columns 93
No_of_seqs 22 out of 24
Neff 2.1
Searched_HMMs 29240
Date Fri Aug 16 18:42:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swk_A Vimentin; cytoskeleton, 85.7 5.2 0.00018 25.6 8.8 63 22-84 11-80 (86)
2 3ol1_A Vimentin; structural ge 82.3 8.7 0.0003 25.5 10.8 63 21-83 30-99 (119)
3 3u59_A Tropomyosin beta chain; 71.5 17 0.00058 23.2 11.0 82 2-83 14-95 (101)
4 4ehp_B Catenin alpha-1; adhere 69.2 8.1 0.00028 26.7 4.6 48 34-81 59-109 (111)
5 3u1c_A Tropomyosin alpha-1 cha 64.5 26 0.00088 22.6 11.3 82 2-83 14-95 (101)
6 3tuf_A Stage III sporulation p 55.3 23 0.0008 26.3 5.3 41 47-87 95-135 (197)
7 3sde_A Paraspeckle component 1 54.3 14 0.00049 25.3 3.8 32 61-92 222-254 (261)
8 1wle_A Seryl-tRNA synthetase; 53.8 69 0.0024 26.0 8.2 55 28-82 70-138 (501)
9 1gmj_A ATPase inhibitor; coile 53.7 45 0.0015 22.0 8.4 11 23-33 21-31 (84)
10 3qne_A Seryl-tRNA synthetase, 51.8 84 0.0029 25.6 8.4 52 32-83 40-94 (485)
11 2dq0_A Seryl-tRNA synthetase; 48.9 98 0.0033 24.5 8.5 57 27-83 30-92 (455)
12 2p32_A Heat shock 70 kDa prote 43.0 62 0.0021 20.5 5.7 22 61-82 69-90 (120)
13 1dgn_A Iceberg (protease inhib 42.5 27 0.00093 21.9 3.4 40 25-64 37-80 (89)
14 4efa_G V-type proton ATPase su 41.9 76 0.0026 21.4 5.8 39 51-89 22-61 (119)
15 2jq3_A Apolipoprotein C-III; A 41.1 3.8 0.00013 27.4 -0.8 16 8-23 28-43 (79)
16 3vbb_A Seryl-tRNA synthetase, 41.0 61 0.0021 26.8 6.1 31 32-62 41-71 (522)
17 3ajw_A Flagellar FLIJ protein; 40.6 67 0.0023 20.2 5.7 45 36-80 9-53 (150)
18 2yy0_A C-MYC-binding protein; 40.3 47 0.0016 19.6 4.1 25 60-84 26-50 (53)
19 3nmd_A CGMP dependent protein 40.3 61 0.0021 20.8 4.8 33 4-36 22-54 (72)
20 3oja_A Leucine-rich immune mol 39.6 1.2E+02 0.004 22.7 8.3 48 38-85 420-467 (487)
21 3lss_A Seryl-tRNA synthetase; 37.7 1.6E+02 0.0056 23.9 8.1 34 27-60 36-72 (484)
22 2l5g_B Putative uncharacterize 37.3 65 0.0022 19.1 4.4 30 52-81 8-37 (42)
23 4igg_A Catenin alpha-1; asymme 37.3 60 0.002 28.2 5.7 52 34-85 249-303 (832)
24 2dq3_A Seryl-tRNA synthetase; 37.3 92 0.0032 24.2 6.3 55 28-82 30-90 (425)
25 1ses_A Seryl-tRNA synthetase; 34.4 1.4E+02 0.0047 23.3 6.9 30 27-56 27-59 (421)
26 3h8k_B Autocrine motility fact 33.2 52 0.0018 17.8 3.1 21 22-42 1-21 (28)
27 4e17_B Catenin alpha-1; four h 32.6 56 0.0019 19.2 3.4 21 35-55 15-35 (40)
28 1ud0_A HSC70, 70 kDa heat-shoc 31.3 93 0.0032 19.1 6.3 45 33-83 33-77 (113)
29 1am9_A Srebp-1A, protein (ster 30.6 95 0.0033 19.0 6.1 37 50-86 40-76 (82)
30 3gaa_A Uncharacterized protein 29.0 48 0.0017 23.9 3.3 39 51-89 205-243 (252)
31 2zvf_A Alanyl-tRNA synthetase; 28.9 1.2E+02 0.0041 19.7 5.0 18 67-84 39-56 (171)
32 3lcn_C MRNA transport factor G 26.7 52 0.0018 18.3 2.4 18 70-87 2-19 (29)
33 1ic2_A Tropomyosin alpha chain 25.8 1.2E+02 0.004 18.5 7.7 47 37-83 4-50 (81)
34 1gk4_A Vimentin; intermediate 25.3 1.2E+02 0.0043 18.6 7.7 50 35-87 4-53 (84)
35 3kdq_A Uncharacterized conserv 23.9 29 0.00099 24.4 1.3 63 23-85 82-146 (154)
36 2wuj_A Septum site-determining 23.6 59 0.002 19.1 2.5 16 66-81 40-55 (57)
37 3bas_A Myosin heavy chain, str 23.6 1.4E+02 0.0048 18.6 7.9 56 29-84 32-87 (89)
38 1nkp_B MAX protein, MYC proto- 22.4 1.4E+02 0.0046 18.0 5.6 50 34-83 14-70 (83)
39 3hnw_A Uncharacterized protein 20.7 2.1E+02 0.007 19.4 8.1 34 50-83 93-126 (138)
40 4e18_B Catenin alpha-1; four h 20.4 1.1E+02 0.0039 19.0 3.4 19 37-55 36-54 (59)
41 3oja_B Anopheles plasmodium-re 20.1 2.9E+02 0.0098 20.9 10.3 19 65-83 556-574 (597)
No 1
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=85.71 E-value=5.2 Score=25.58 Aligned_cols=63 Identities=19% Similarity=0.346 Sum_probs=54.7
Q ss_pred hhhhhhHHHHHHHHhHHHHHHHHHH-------HHhHHHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHHH
Q psy3837 22 WAFSERDKIVLERESIRTLCDKLRK-------ERDRAVSDLAEALRDSDNIKKQKNETSKELKVLKEKME 84 (93)
Q Consensus 22 WAfsERdKIV~EReSirtLCd~LRk-------ERD~AvS~la~AiRd~Ddi~kqk~ea~kel~~lKEk~e 84 (93)
=+.+++.+|..|++.++...+.+|. -|..+=+++..--++.|+.-=.|-++..++.-|++.|.
T Consensus 11 ~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 11 QLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999987 37888888999999999999889999999999988763
No 2
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=82.34 E-value=8.7 Score=25.52 Aligned_cols=63 Identities=21% Similarity=0.369 Sum_probs=50.2
Q ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHH-------HhHHHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHH
Q psy3837 21 DWAFSERDKIVLERESIRTLCDKLRKE-------RDRAVSDLAEALRDSDNIKKQKNETSKELKVLKEKM 83 (93)
Q Consensus 21 DWAfsERdKIV~EReSirtLCd~LRkE-------RD~AvS~la~AiRd~Ddi~kqk~ea~kel~~lKEk~ 83 (93)
|=+-.++-+|+.|.+.++...+.+|.. |..+=+++...-++.|+.-=.+-++..++.-|++.|
T Consensus 30 d~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 30 DQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 335568889999999999999988863 777777888888888888777777777777777766
No 3
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=71.52 E-value=17 Score=23.22 Aligned_cols=82 Identities=15% Similarity=0.227 Sum_probs=69.8
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHhhhHHHHHHHHHHH
Q psy3837 2 ISVCCEESIQEAEVSKRRRDWAFSERDKIVLERESIRTLCDKLRKERDRAVSDLAEALRDSDNIKKQKNETSKELKVLKE 81 (93)
Q Consensus 2 ~~~el~ea~qeaevaKrrRDWAfsERdKIV~EReSirtLCd~LRkERD~AvS~la~AiRd~Ddi~kqk~ea~kel~~lKE 81 (93)
+..|.+.|+..|+.+...-.=|=....+.-.|=.|+..=+-.|-.+-|++-..|..+....+...+...++..+...|.-
T Consensus 14 lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnR 93 (101)
T 3u59_A 14 LKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888877766677777888888888877778888899999999999999999999999999999999988
Q ss_pred HH
Q psy3837 82 KM 83 (93)
Q Consensus 82 k~ 83 (93)
+|
T Consensus 94 ri 95 (101)
T 3u59_A 94 RI 95 (101)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 4
>4ehp_B Catenin alpha-1; adherens junctions, vinculin binding site, vinculin binding helix bundle, cell adhesion; 2.66A {Homo sapiens}
Probab=69.24 E-value=8.1 Score=26.66 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=33.2
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHhhh---hhHHHHhhhHHHHHHHHHHH
Q psy3837 34 RESIRTLCDKLRKERDRAVSDLAEALRD---SDNIKKQKNETSKELKVLKE 81 (93)
Q Consensus 34 ReSirtLCd~LRkERD~AvS~la~AiRd---~Ddi~kqk~ea~kel~~lKE 81 (93)
|+.|=.+|+++|..-.+.+|+...+.-. +|++..-...+.+..++|+-
T Consensus 59 RerIv~eCnavRqaLQdLlseym~~~g~ke~se~L~~aI~km~~kt~dLrR 109 (111)
T 4ehp_B 59 RERIVAECNAVRQALQDLLSEYMGNAGRKERSDALNSAIDKMTKKTRDLRR 109 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHh
Confidence 4555678999999999988888776433 35666666666666666654
No 5
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=64.50 E-value=26 Score=22.63 Aligned_cols=82 Identities=11% Similarity=0.148 Sum_probs=67.0
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHhhhHHHHHHHHHHH
Q psy3837 2 ISVCCEESIQEAEVSKRRRDWAFSERDKIVLERESIRTLCDKLRKERDRAVSDLAEALRDSDNIKKQKNETSKELKVLKE 81 (93)
Q Consensus 2 ~~~el~ea~qeaevaKrrRDWAfsERdKIV~EReSirtLCd~LRkERD~AvS~la~AiRd~Ddi~kqk~ea~kel~~lKE 81 (93)
+..|.+.|+..|+.+...-.=+=....+.-.|=.|+..=.-.|--+-|++-..|..|....+...+...++..++..|.-
T Consensus 14 lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~R 93 (101)
T 3u1c_A 14 LKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888776666666667777777777666666777899999999999999999999999999999999987
Q ss_pred HH
Q psy3837 82 KM 83 (93)
Q Consensus 82 k~ 83 (93)
+|
T Consensus 94 ri 95 (101)
T 3u1c_A 94 RI 95 (101)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 6
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=55.31 E-value=23 Score=26.29 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=31.3
Q ss_pred HHhHHHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHHHH
Q psy3837 47 ERDRAVSDLAEALRDSDNIKKQKNETSKELKVLKEKMEAQV 87 (93)
Q Consensus 47 ERD~AvS~la~AiRd~Ddi~kqk~ea~kel~~lKEk~e~q~ 87 (93)
.|++.+..|-..|-+.+--..+|.+|..+|-+|.+.++.+.
T Consensus 95 ~Rsk~~E~L~eII~n~n~S~eeK~eA~~ql~eLt~~~ekE~ 135 (197)
T 3tuf_A 95 ARSKEREELNAIVSSDDATAKEKSEAYDKMTALSEVEGTEK 135 (197)
T ss_dssp HHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777667899999999999988775544
No 7
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=54.35 E-value=14 Score=25.35 Aligned_cols=32 Identities=31% Similarity=0.538 Sum_probs=22.7
Q ss_pred hhhHHHH-hhhHHHHHHHHHHHHHHHHHHHhhc
Q psy3837 61 DSDNIKK-QKNETSKELKVLKEKMEAQVELERY 92 (93)
Q Consensus 61 d~Ddi~k-qk~ea~kel~~lKEk~e~q~eke~~ 92 (93)
..+++.+ |.+.+.+++++-+|+|++|++.-.|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~ 254 (261)
T 3sde_A 222 ALDEMEKQQREQVDRNIREAKEKLEAEMEAARH 254 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444 5557778889999999999876554
No 8
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=53.79 E-value=69 Score=25.96 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=33.9
Q ss_pred HHHH---HHHHhHHHHHHHHHHHHhHHHHHHHHHhhhh-----------hHHHHhhhHHHHHHHHHHHH
Q psy3837 28 DKIV---LERESIRTLCDKLRKERDRAVSDLAEALRDS-----------DNIKKQKNETSKELKVLKEK 82 (93)
Q Consensus 28 dKIV---~EReSirtLCd~LRkERD~AvS~la~AiRd~-----------Ddi~kqk~ea~kel~~lKEk 82 (93)
|+|+ .+|-++.+=.+.|+.+|...-..++.+.... +.++.+..++..+|+.+.++
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~ 138 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPK 138 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4554 4677777788999999987777776655443 23444444444555555443
No 9
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=53.75 E-value=45 Score=22.02 Aligned_cols=11 Identities=36% Similarity=0.546 Sum_probs=5.9
Q ss_pred hhhhhHHHHHH
Q psy3837 23 AFSERDKIVLE 33 (93)
Q Consensus 23 AfsERdKIV~E 33 (93)
||+.|++-.-+
T Consensus 21 aFgKrEaA~Ee 31 (84)
T 1gmj_A 21 AFGKREQAEEE 31 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred CcccHHHHhHH
Confidence 56666654433
No 10
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=51.79 E-value=84 Score=25.65 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=35.0
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHHHHhhhhh---HHHHhhhHHHHHHHHHHHHH
Q psy3837 32 LERESIRTLCDKLRKERDRAVSDLAEALRDSD---NIKKQKNETSKELKVLKEKM 83 (93)
Q Consensus 32 ~EReSirtLCd~LRkERD~AvS~la~AiRd~D---di~kqk~ea~kel~~lKEk~ 83 (93)
.+|-++.+-.+.||.+|...-..++.+.+..+ .++.+..++..+|+.+++++
T Consensus 40 ~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~ 94 (485)
T 3qne_A 40 KEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKE 94 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888899999999887777766655443 44555555555555555443
No 11
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=48.94 E-value=98 Score=24.49 Aligned_cols=57 Identities=18% Similarity=0.341 Sum_probs=36.3
Q ss_pred hHHHH---HHHHhHHHHHHHHHHHHhHHHHHHHHHhhhhh---HHHHhhhHHHHHHHHHHHHH
Q psy3837 27 RDKIV---LERESIRTLCDKLRKERDRAVSDLAEALRDSD---NIKKQKNETSKELKVLKEKM 83 (93)
Q Consensus 27 RdKIV---~EReSirtLCd~LRkERD~AvS~la~AiRd~D---di~kqk~ea~kel~~lKEk~ 83 (93)
=|+|+ .+|-++.+-.++||.+|...-..++.+..+.+ .++.+..++..+|+.+++++
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 92 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEV 92 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35554 46888888899999999887777776555433 34444445555555555443
No 12
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=43.03 E-value=62 Score=20.54 Aligned_cols=22 Identities=9% Similarity=0.211 Sum_probs=11.0
Q ss_pred hhhHHHHhhhHHHHHHHHHHHH
Q psy3837 61 DSDNIKKQKNETSKELKVLKEK 82 (93)
Q Consensus 61 d~Ddi~kqk~ea~kel~~lKEk 82 (93)
+.+.|+.+..++.+-...|-.+
T Consensus 69 d~e~ik~k~~eL~~~~~~i~~k 90 (120)
T 2p32_A 69 EKEEFEHQQKDLEGLANPIISK 90 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444443
No 13
>1dgn_A Iceberg (protease inhibitor); antiparallel six-helix bundle, greek-KEY, hydrolase inhibitor; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=42.53 E-value=27 Score=21.90 Aligned_cols=40 Identities=18% Similarity=0.271 Sum_probs=31.4
Q ss_pred hhhHHHHHH----HHhHHHHHHHHHHHHhHHHHHHHHHhhhhhH
Q psy3837 25 SERDKIVLE----RESIRTLCDKLRKERDRAVSDLAEALRDSDN 64 (93)
Q Consensus 25 sERdKIV~E----ReSirtLCd~LRkERD~AvS~la~AiRd~Dd 64 (93)
.|.++|-.+ -+-.|.|.|.+++--+.|.+-+..+|...|-
T Consensus 37 ~E~e~i~~~~~t~~dkar~LiD~V~~KG~~A~~~f~~~L~~~D~ 80 (89)
T 1dgn_A 37 EDMNKVRDENDTVMDKARVLIDLVTGKGPKSCCKFIKHLCEEDP 80 (89)
T ss_dssp HHHHHHHTCCSSHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCH
Confidence 356677766 6778899999988888888888888877663
No 14
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=41.90 E-value=76 Score=21.41 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=26.7
Q ss_pred HHHHHHHHhhh-hhHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy3837 51 AVSDLAEALRD-SDNIKKQKNETSKELKVLKEKMEAQVEL 89 (93)
Q Consensus 51 AvS~la~AiRd-~Ddi~kqk~ea~kel~~lKEk~e~q~ek 89 (93)
|-..+..|... ..-++.-|.+|.+||+.++.+.|.++.+
T Consensus 22 A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~eFk~ 61 (119)
T 4efa_G 22 AHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKE 61 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555443 3445556889999999999988887743
No 15
>2jq3_A Apolipoprotein C-III; APOCIII, structure, dynamics, receptor, lipid binding protein; NMR {Homo sapiens}
Probab=41.11 E-value=3.8 Score=27.37 Aligned_cols=16 Identities=38% Similarity=0.846 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhhhhhh
Q psy3837 8 ESIQEAEVSKRRRDWA 23 (93)
Q Consensus 8 ea~qeaevaKrrRDWA 23 (93)
-++||.+||.+-|||-
T Consensus 28 tsvQEsqVA~~AR~Wm 43 (79)
T 2jq3_A 28 SSVQESQVAQQARGWV 43 (79)
T ss_dssp HGGGGGGGHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4689999999999995
No 16
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=41.03 E-value=61 Score=26.76 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=24.5
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHHHHhhhh
Q psy3837 32 LERESIRTLCDKLRKERDRAVSDLAEALRDS 62 (93)
Q Consensus 32 ~EReSirtLCd~LRkERD~AvS~la~AiRd~ 62 (93)
.+|-++.+-.++||.+|...-..++.+.+..
T Consensus 41 ~~~r~~~~~~e~l~~~~N~~sk~ig~~~~~~ 71 (522)
T 3vbb_A 41 SEWRRCRFRADNLNKLKNLCSKTIGEKMKKK 71 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4788889999999999988777777665543
No 17
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=40.63 E-value=67 Score=20.23 Aligned_cols=45 Identities=24% Similarity=0.185 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHhhhHHHHHHHHHH
Q psy3837 36 SIRTLCDKLRKERDRAVSDLAEALRDSDNIKKQKNETSKELKVLK 80 (93)
Q Consensus 36 SirtLCd~LRkERD~AvS~la~AiRd~Ddi~kqk~ea~kel~~lK 80 (93)
++-+|++-=.+..|.|...|+.|.+.......+.+.+.....+..
T Consensus 9 ~L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~ 53 (150)
T 3ajw_A 9 ALETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYR 53 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777778888999999988888888887777776655443
No 18
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=40.31 E-value=47 Score=19.61 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=13.8
Q ss_pred hhhhHHHHhhhHHHHHHHHHHHHHH
Q psy3837 60 RDSDNIKKQKNETSKELKVLKEKME 84 (93)
Q Consensus 60 Rd~Ddi~kqk~ea~kel~~lKEk~e 84 (93)
..-++++.+.+.+.+++.+++.+++
T Consensus 26 ~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 26 LELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555556666666665553
No 19
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=40.26 E-value=61 Score=20.80 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHh
Q psy3837 4 VCCEESIQEAEVSKRRRDWAFSERDKIVLERES 36 (93)
Q Consensus 4 ~el~ea~qeaevaKrrRDWAfsERdKIV~EReS 36 (93)
.+|..++++...-=+.+|=-+-+.++.++|+++
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~ 54 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777767777777777888888776
No 20
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=39.62 E-value=1.2e+02 Score=22.74 Aligned_cols=48 Identities=6% Similarity=0.055 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHH
Q psy3837 38 RTLCDKLRKERDRAVSDLAEALRDSDNIKKQKNETSKELKVLKEKMEA 85 (93)
Q Consensus 38 rtLCd~LRkERD~AvS~la~AiRd~Ddi~kqk~ea~kel~~lKEk~e~ 85 (93)
..+-..+=.||+++..+....-..-+.++++++.+.+++.++..+++.
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 420 EEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 345555666888877777777777777778888888888888777643
No 21
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=37.71 E-value=1.6e+02 Score=23.88 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=25.7
Q ss_pred hHHHH---HHHHhHHHHHHHHHHHHhHHHHHHHHHhh
Q psy3837 27 RDKIV---LERESIRTLCDKLRKERDRAVSDLAEALR 60 (93)
Q Consensus 27 RdKIV---~EReSirtLCd~LRkERD~AvS~la~AiR 60 (93)
=|+|+ .+|-++.+-.++||.+|...-..++.+.+
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35554 47888888899999999887777766655
No 22
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=37.31 E-value=65 Score=19.08 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=17.1
Q ss_pred HHHHHHHhhhhhHHHHhhhHHHHHHHHHHH
Q psy3837 52 VSDLAEALRDSDNIKKQKNETSKELKVLKE 81 (93)
Q Consensus 52 vS~la~AiRd~Ddi~kqk~ea~kel~~lKE 81 (93)
+.++..-=|+-+...+|+++.++.+++|.+
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555666666666666666654
No 23
>4igg_A Catenin alpha-1; asymmetric dimer, adherens junctions, F-actin binding, cell; 3.66A {Homo sapiens}
Probab=37.30 E-value=60 Score=28.21 Aligned_cols=52 Identities=19% Similarity=0.356 Sum_probs=37.4
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHhh---hhhHHHHhhhHHHHHHHHHHHHHHH
Q psy3837 34 RESIRTLCDKLRKERDRAVSDLAEALR---DSDNIKKQKNETSKELKVLKEKMEA 85 (93)
Q Consensus 34 ReSirtLCd~LRkERD~AvS~la~AiR---d~Ddi~kqk~ea~kel~~lKEk~e~ 85 (93)
|+.|-.+|+.+|.+..+.++.....-- +++++..-.+.+.+.+++|+..|..
T Consensus 249 Re~Iv~~C~~vrq~L~dLl~~~~~~~g~~~~s~~l~~ai~~l~~k~~dL~r~L~~ 303 (832)
T 4igg_A 249 RERIVAECNAVRQALQDLLSEYMGNAGRKERSDALNSAIDKMTKKTRDLRRQLRK 303 (832)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888999999987777765433211 3567777777788888888887744
No 24
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=37.26 E-value=92 Score=24.22 Aligned_cols=55 Identities=25% Similarity=0.456 Sum_probs=32.8
Q ss_pred HHHH---HHHHhHHHHHHHHHHHHhHHHHHHHHHhhhhh---HHHHhhhHHHHHHHHHHHH
Q psy3837 28 DKIV---LERESIRTLCDKLRKERDRAVSDLAEALRDSD---NIKKQKNETSKELKVLKEK 82 (93)
Q Consensus 28 dKIV---~EReSirtLCd~LRkERD~AvS~la~AiRd~D---di~kqk~ea~kel~~lKEk 82 (93)
|.|+ .+|-++.+=.++||.+|...-..++.+..+.+ .++.+..++..+|+.++++
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 90 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEE 90 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4544 47888888899999999877666665444332 2333444444444444433
No 25
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=34.36 E-value=1.4e+02 Score=23.29 Aligned_cols=30 Identities=10% Similarity=0.307 Sum_probs=21.0
Q ss_pred hHHHH---HHHHhHHHHHHHHHHHHhHHHHHHH
Q psy3837 27 RDKIV---LERESIRTLCDKLRKERDRAVSDLA 56 (93)
Q Consensus 27 RdKIV---~EReSirtLCd~LRkERD~AvS~la 56 (93)
=|+|+ .+|-++.+=.++||.+|...-..++
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~ 59 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35554 4777888888999999876555444
No 26
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=33.20 E-value=52 Score=17.78 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=16.7
Q ss_pred hhhhhhHHHHHHHHhHHHHHH
Q psy3837 22 WAFSERDKIVLERESIRTLCD 42 (93)
Q Consensus 22 WAfsERdKIV~EReSirtLCd 42 (93)
|.-+||..++++|-+.=-++.
T Consensus 1 ~s~~eRq~~Lq~Rk~~mi~~A 21 (28)
T 3h8k_B 1 WSADERQRMLVQRKDELLQQA 21 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 888999999999987655544
No 27
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=32.59 E-value=56 Score=19.17 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=12.5
Q ss_pred HhHHHHHHHHHHHHhHHHHHH
Q psy3837 35 ESIRTLCDKLRKERDRAVSDL 55 (93)
Q Consensus 35 eSirtLCd~LRkERD~AvS~l 55 (93)
+.|=+-|+.+|.--.+.+|++
T Consensus 15 erIv~eCnavrqALQdLlseY 35 (40)
T 4e17_B 15 ERIVAECNAVRQALQDLLSEY 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344456888886555555543
No 28
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=31.34 E-value=93 Score=19.09 Aligned_cols=45 Identities=16% Similarity=0.336 Sum_probs=22.6
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHH
Q psy3837 33 ERESIRTLCDKLRKERDRAVSDLAEALRDSDNIKKQKNETSKELKVLKEKM 83 (93)
Q Consensus 33 EReSirtLCd~LRkERD~AvS~la~AiRd~Ddi~kqk~ea~kel~~lKEk~ 83 (93)
+++.|...|+.|+.--+. .. --+.+.|+.+..++.+-...|-.++
T Consensus 33 ek~~i~~~i~~l~~~L~~--~~----~ad~~~i~~~~~~L~~~~~~i~~~~ 77 (113)
T 1ud0_A 33 DKQKILDKCNEIISWLDK--NQ----TAEKEEFEHQQKELEKVCNPIITKL 77 (113)
T ss_dssp HHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc--CC----ccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777666542211 00 0134556666655555555554443
No 29
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=30.64 E-value=95 Score=19.03 Aligned_cols=37 Identities=11% Similarity=0.112 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHHH
Q psy3837 50 RAVSDLAEALRDSDNIKKQKNETSKELKVLKEKMEAQ 86 (93)
Q Consensus 50 ~AvS~la~AiRd~Ddi~kqk~ea~kel~~lKEk~e~q 86 (93)
.-++=|..|+.-...+..+...+..+...|+..+.++
T Consensus 40 ~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 40 NKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456688888888889999999999999999888654
No 30
>3gaa_A Uncharacterized protein TA1441; the protein with unknown function from thermoplasma acidophi structural genomics,PSI, MCSG; 2.70A {Thermoplasma acidophilum}
Probab=29.01 E-value=48 Score=23.92 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=28.6
Q ss_pred HHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy3837 51 AVSDLAEALRDSDNIKKQKNETSKELKVLKEKMEAQVEL 89 (93)
Q Consensus 51 AvS~la~AiRd~Ddi~kqk~ea~kel~~lKEk~e~q~ek 89 (93)
+++++..--=|.+++.++-.+...+++++.|++++..++
T Consensus 205 ~l~~~~gl~i~~~~L~e~Ae~~e~~i~~l~e~~~~~~~~ 243 (252)
T 3gaa_A 205 AINKAYNLKIKTDLLEEQVKALDEQIKKIEEQYKELQEK 243 (252)
T ss_dssp HHHHHHCCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444444466888899999999999999998765543
No 31
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=28.91 E-value=1.2e+02 Score=19.73 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=9.7
Q ss_pred HhhhHHHHHHHHHHHHHH
Q psy3837 67 KQKNETSKELKVLKEKME 84 (93)
Q Consensus 67 kqk~ea~kel~~lKEk~e 84 (93)
.+..++.|++..++.++-
T Consensus 39 ~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 39 EEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455666666665543
No 32
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=26.70 E-value=52 Score=18.28 Aligned_cols=18 Identities=39% Similarity=0.639 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy3837 70 NETSKELKVLKEKMEAQV 87 (93)
Q Consensus 70 ~ea~kel~~lKEk~e~q~ 87 (93)
.++...++-||.++|.|-
T Consensus 2 ~~~~sKm~lLKKKIEEQr 19 (29)
T 3lcn_C 2 QDTASKMKLLKKKIEEQR 19 (29)
T ss_dssp --CHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHH
Confidence 345556677777777764
No 33
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=25.83 E-value=1.2e+02 Score=18.51 Aligned_cols=47 Identities=19% Similarity=0.349 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHH
Q psy3837 37 IRTLCDKLRKERDRAVSDLAEALRDSDNIKKQKNETSKELKVLKEKM 83 (93)
Q Consensus 37 irtLCd~LRkERD~AvS~la~AiRd~Ddi~kqk~ea~kel~~lKEk~ 83 (93)
|+.=-..|+-+-|.|...+..+-.+..+..+....+..++..|+-+|
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKi 50 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKL 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444567778888888888887777777777777777777777665
No 34
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=25.33 E-value=1.2e+02 Score=18.62 Aligned_cols=50 Identities=12% Similarity=0.271 Sum_probs=29.8
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHHHH
Q psy3837 35 ESIRTLCDKLRKERDRAVSDLAEALRDSDNIKKQKNETSKELKVLKEKMEAQV 87 (93)
Q Consensus 35 eSirtLCd~LRkERD~AvS~la~AiRd~Ddi~kqk~ea~kel~~lKEk~e~q~ 87 (93)
+|+++...+|-..-..+-..+..++.+ +..+.+....+|..++..|+.|+
T Consensus 4 ~~l~~~~~sLE~~l~e~e~~~~~~~~~---~q~~i~~lE~eL~~~r~e~~~q~ 53 (84)
T 1gk4_A 4 DALKGTNESLERQMREMEENFAVEAAN---YQDTIGRLQDEIQNMKEEMARHL 53 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777766666665555555533 34445555666666666665554
No 35
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=23.86 E-value=29 Score=24.37 Aligned_cols=63 Identities=29% Similarity=0.408 Sum_probs=42.6
Q ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHhHH-HHHH-HHHhhhhhHHHHhhhHHHHHHHHHHHHHHH
Q psy3837 23 AFSERDKIVLERESIRTLCDKLRKERDRA-VSDL-AEALRDSDNIKKQKNETSKELKVLKEKMEA 85 (93)
Q Consensus 23 AfsERdKIV~EReSirtLCd~LRkERD~A-vS~l-a~AiRd~Ddi~kqk~ea~kel~~lKEk~e~ 85 (93)
|+.+||.+-.+...++.+.++-.-+.++. .|++ -.+.=|.....++-++++|++.+|--+|.+
T Consensus 82 aia~rd~L~~~~~~l~~~~~~a~~~~~rys~sEIk~vs~vdv~~~qk~ad~l~k~~r~Ld~~IQ~ 146 (154)
T 3kdq_A 82 ALSVRDALLKKRTLYSDLADQLTSRQDRYSRSEIKYVATMDAREIRKKADLAAKEYRQLDVDIQR 146 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCSSTTSCCEEESSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccchhhhhheeccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888877755443221 1111 112336778899999999999999887743
No 36
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=23.62 E-value=59 Score=19.06 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=5.4
Q ss_pred HHhhhHHHHHHHHHHH
Q psy3837 66 KKQKNETSKELKVLKE 81 (93)
Q Consensus 66 ~kqk~ea~kel~~lKE 81 (93)
.++..++..++..+++
T Consensus 40 ~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 40 LRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333444444444443
No 37
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=23.55 E-value=1.4e+02 Score=18.62 Aligned_cols=56 Identities=9% Similarity=0.125 Sum_probs=41.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHHH
Q psy3837 29 KIVLERESIRTLCDKLRKERDRAVSDLAEALRDSDNIKKQKNETSKELKVLKEKME 84 (93)
Q Consensus 29 KIV~EReSirtLCd~LRkERD~AvS~la~AiRd~Ddi~kqk~ea~kel~~lKEk~e 84 (93)
+.-..|.-+..-+..|-.+..+....+++|=--++.+.++|.++...|.++.+.++
T Consensus 32 k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 32 KTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445555555666666666666666888888888889999999999999988764
No 38
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=22.40 E-value=1.4e+02 Score=18.00 Aligned_cols=50 Identities=18% Similarity=0.311 Sum_probs=30.8
Q ss_pred HHhHHHHHHHHHH-------HHhHHHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHH
Q psy3837 34 RESIRTLCDKLRK-------ERDRAVSDLAEALRDSDNIKKQKNETSKELKVLKEKM 83 (93)
Q Consensus 34 ReSirtLCd~LRk-------ERD~AvS~la~AiRd~Ddi~kqk~ea~kel~~lKEk~ 83 (93)
|+.|....+.||. .+-.=++=|..|+.-...+..+...+..+++.|+.+.
T Consensus 14 R~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~ 70 (83)
T 1nkp_B 14 RDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQN 70 (83)
T ss_dssp HHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666665 2223345566777766777777777777777776543
No 39
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=20.73 E-value=2.1e+02 Score=19.44 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHH
Q psy3837 50 RAVSDLAEALRDSDNIKKQKNETSKELKVLKEKM 83 (93)
Q Consensus 50 ~AvS~la~AiRd~Ddi~kqk~ea~kel~~lKEk~ 83 (93)
..-.+|..+--..+...++..++.+++++|.+++
T Consensus 93 ~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 93 DLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555556666666666666666665543
No 40
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=20.40 E-value=1.1e+02 Score=19.02 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q psy3837 37 IRTLCDKLRKERDRAVSDL 55 (93)
Q Consensus 37 irtLCd~LRkERD~AvS~l 55 (93)
|=+.|+++|.--.+.+|++
T Consensus 36 Iv~eCnavrqALQdLlsEY 54 (59)
T 4e18_B 36 IVAECNAVRQALQDLLSEY 54 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455999987555555543
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.10 E-value=2.9e+02 Score=20.90 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=7.1
Q ss_pred HHHhhhHHHHHHHHHHHHH
Q psy3837 65 IKKQKNETSKELKVLKEKM 83 (93)
Q Consensus 65 i~kqk~ea~kel~~lKEk~ 83 (93)
++++..++.+|+..++.++
T Consensus 556 ~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 556 KRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
Done!