Query psy3837
Match_columns 93
No_of_seqs 22 out of 24
Neff 2.1
Searched_HMMs 13730
Date Fri Aug 16 18:42:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3837.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3837hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 54.5 18 0.0013 21.3 6.8 39 16-55 17-58 (110)
2 d1st6a5 a.24.9.1 (A:489-646) V 54.0 9.7 0.00071 25.6 4.6 58 32-89 48-105 (158)
3 d1st6a3 a.24.9.1 (A:253-371) V 38.8 44 0.0032 21.3 6.9 48 33-84 65-116 (119)
4 d1eh1a_ d.67.3.1 (A:) Ribosome 36.3 52 0.0038 21.5 6.8 45 43-87 128-176 (185)
5 d2a26a1 a.2.16.1 (A:1-47) Calc 33.0 34 0.0025 19.4 4.0 33 1-33 1-39 (47)
6 d1ab4a_ e.11.1.1 (A:) DNA Gyra 23.6 68 0.0049 23.6 5.4 17 67-83 468-484 (493)
7 d1k4ta1 a.2.8.1 (A:641-712) Eu 22.6 62 0.0045 19.3 4.1 11 73-83 48-58 (72)
8 d1uzba_ c.82.1.1 (A:) 1-pyrrol 22.2 1.2E+02 0.0089 21.5 6.5 46 4-55 74-120 (516)
9 d1ez4a2 d.162.1.1 (A:163-334) 21.0 50 0.0036 19.9 3.5 24 32-55 146-169 (171)
10 d1st6a4 a.24.9.1 (A:372-488) V 20.3 1E+02 0.0074 19.5 7.2 51 33-87 56-110 (117)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=54.50 E-value=18 Score=21.34 Aligned_cols=39 Identities=13% Similarity=0.308 Sum_probs=26.1
Q ss_pred HhhhhhhhhhhhHHHH---HHHHhHHHHHHHHHHHHhHHHHHH
Q psy3837 16 SKRRRDWAFSERDKIV---LERESIRTLCDKLRKERDRAVSDL 55 (93)
Q Consensus 16 aKrrRDWAfsERdKIV---~EReSirtLCd~LRkERD~AvS~l 55 (93)
+=.+|.-.+.- |+|+ .+|-++.+-.+.||.+|-..-..+
T Consensus 17 ~l~~R~~~~~l-d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i 58 (110)
T d1seta1 17 AIREKGVALDL-EALLALDREVQELKKRLQEVQTERNQVAKRV 58 (110)
T ss_dssp HHHHTTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHcCCccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555542 5554 578888889999999997654444
No 2
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=53.99 E-value=9.7 Score=25.55 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=30.3
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy3837 32 LERESIRTLCDKLRKERDRAVSDLAEALRDSDNIKKQKNETSKELKVLKEKMEAQVEL 89 (93)
Q Consensus 32 ~EReSirtLCd~LRkERD~AvS~la~AiRd~Ddi~kqk~ea~kel~~lKEk~e~q~ek 89 (93)
.+|..|..+|+.|..-.|...+-...-.=++...+.--+.++..|++|+.+|..-+-.
T Consensus 48 ~~r~~Il~~C~el~~l~~~LadLr~~G~G~sPeA~~lA~qi~~kL~dL~~~v~~Avv~ 105 (158)
T d1st6a5 48 PYRQDLLAKCDRVDQLAAQLADLAARGEGESPQARAIAAQLQDSLKDLKARMQEAMTQ 105 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSTTSSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888665554332111111122222222334566677777777655433
No 3
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=38.76 E-value=44 Score=21.34 Aligned_cols=48 Identities=25% Similarity=0.373 Sum_probs=29.5
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHHHhhhh----hHHHHhhhHHHHHHHHHHHHHH
Q psy3837 33 ERESIRTLCDKLRKERDRAVSDLAEALRDS----DNIKKQKNETSKELKVLKEKME 84 (93)
Q Consensus 33 EReSirtLCd~LRkERD~AvS~la~AiRd~----Ddi~kqk~ea~kel~~lKEk~e 84 (93)
+|..|..||+.| +..+..|+.-.+.. -..+.--+.++..|++|+.++.
T Consensus 65 ~r~~Il~~c~ei----~~lt~qLadLr~~G~G~sPeA~~lA~qi~~kL~~L~~~v~ 116 (119)
T d1st6a3 65 ERREILGTCKTL----GQMTDQLADLRARGQGATPMAMQKAQQVSQGLDLLTAKVE 116 (119)
T ss_dssp THHHHHHHHHHH----HHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677788766 55666666655543 3334444456667777777764
No 4
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]}
Probab=36.32 E-value=52 Score=21.50 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=29.8
Q ss_pred HHHHHHhHHHHHHHHHhh----hhhHHHHhhhHHHHHHHHHHHHHHHHH
Q psy3837 43 KLRKERDRAVSDLAEALR----DSDNIKKQKNETSKELKVLKEKMEAQV 87 (93)
Q Consensus 43 ~LRkERD~AvS~la~AiR----d~Ddi~kqk~ea~kel~~lKEk~e~q~ 87 (93)
.+|.-|.++...+-...- ..|+.++..++.++-.+..-.+++..+
T Consensus 128 ~iR~iR~~~~~~ikk~~k~~~iseD~~k~~~~eiq~ltd~~~~~id~~~ 176 (185)
T d1eh1a_ 128 AIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLA 176 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777666655443 357778777788877777777776544
No 5
>d2a26a1 a.2.16.1 (A:1-47) Calcyclin-binding protein, CacyBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.97 E-value=34 Score=19.36 Aligned_cols=33 Identities=36% Similarity=0.396 Sum_probs=26.3
Q ss_pred ChhhHHHHHHHHHHH------HhhhhhhhhhhhHHHHHH
Q psy3837 1 MISVCCEESIQEAEV------SKRRRDWAFSERDKIVLE 33 (93)
Q Consensus 1 ~~~~el~ea~qeaev------aKrrRDWAfsERdKIV~E 33 (93)
|...||..-++|.++ -||.||--+.|..||-.|
T Consensus 1 ~a~eElqkDLeEvk~LLekaTRkRvrd~Lt~Ek~kletE 39 (47)
T d2a26a1 1 MASEELQKDLEEVKVLLEKATRKRVRDALTAEKSKIETE 39 (47)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888876 488899888888888655
No 6
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=23.62 E-value=68 Score=23.59 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=11.3
Q ss_pred HhhhHHHHHHHHHHHHH
Q psy3837 67 KQKNETSKELKVLKEKM 83 (93)
Q Consensus 67 kqk~ea~kel~~lKEk~ 83 (93)
+..+-..+||++++++.
T Consensus 468 ~l~~~i~~EL~~lk~kf 484 (493)
T d1ab4a_ 468 RLMEVIREELELVREQF 484 (493)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34455667888888775
No 7
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.61 E-value=62 Score=19.33 Aligned_cols=11 Identities=27% Similarity=0.537 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q psy3837 73 SKELKVLKEKM 83 (93)
Q Consensus 73 ~kel~~lKEk~ 83 (93)
.+.|.-|+|+|
T Consensus 48 kK~leRL~EQL 58 (72)
T d1k4ta1 48 KKAVQRLEEQL 58 (72)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 8
>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase {Thermus thermophilus [TaxId: 274]}
Probab=22.20 E-value=1.2e+02 Score=21.53 Aligned_cols=46 Identities=15% Similarity=0.349 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHhh-hhhhhhhhhHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q psy3837 4 VCCEESIQEAEVSKR-RRDWAFSERDKIVLERESIRTLCDKLRKERDRAVSDL 55 (93)
Q Consensus 4 ~el~ea~qeaevaKr-rRDWAfsERdKIV~EReSirtLCd~LRkERD~AvS~l 55 (93)
.+++.|++-|..|.. -+.+-+.+|.+| ++.++|.|.+.+|..+.-+
T Consensus 74 ~dv~~Av~aA~~A~~~W~~~s~~~R~~i------L~~~a~~l~~~~~ela~~~ 120 (516)
T d1uzba_ 74 AEAEAALEAAWKAFKTWKDWPQEDRSRL------LLKAAALMRRRKRELEATL 120 (516)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHH------HHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 578899998887753 234456677665 4679999998888654433
No 9
>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}
Probab=21.00 E-value=50 Score=19.85 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=17.6
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHH
Q psy3837 32 LERESIRTLCDKLRKERDRAVSDL 55 (93)
Q Consensus 32 ~EReSirtLCd~LRkERD~AvS~l 55 (93)
.|++-++.-|+.||++.++++..|
T Consensus 146 ~E~~~l~~s~~~l~~~i~~~l~~l 169 (171)
T d1ez4a2 146 DELKKMQDSAATLKKVLNDGLAEL 169 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366777777888888887777665
No 10
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=20.27 E-value=1e+02 Score=19.51 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=28.7
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHHHhhhh----hHHHHhhhHHHHHHHHHHHHHHHHH
Q psy3837 33 ERESIRTLCDKLRKERDRAVSDLAEALRDS----DNIKKQKNETSKELKVLKEKMEAQV 87 (93)
Q Consensus 33 EReSirtLCd~LRkERD~AvS~la~AiRd~----Ddi~kqk~ea~kel~~lKEk~e~q~ 87 (93)
+|..|..|||.| +.....|++-.+.. -..+.--+.+...|++|+.+|..-+
T Consensus 56 ~r~~il~lc~ei----~~lt~qLadLr~~GkG~sPeA~~lA~qi~~kL~~L~~~v~~Av 110 (117)
T d1st6a4 56 ERDDILRSLGEI----SALTAKLSDLRRHGKGDSPEARALAKQIATSLQNLQSKTNRAV 110 (117)
T ss_dssp THHHHHHHHHHH----HHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677765 44555555544432 3333334456667777777775443
Done!