RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3837
         (93 letters)



>d1k7ha_ c.76.1.1 (A:) Alkaline phosphatase {Northern shrimp
          (Pandalus borealis) [TaxId: 6703]}
          Length = 476

 Score = 26.7 bits (58), Expect = 0.39
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 48 RDRAVSDLAEALRDSDNIKKQKN 70
             A   L + L      K+ KN
Sbjct: 8  NKDAQDALDKQLGIKLREKQAKN 30


>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
          Length = 493

 Score = 26.1 bits (57), Expect = 0.60
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 42  DKLRKERDRAVSDLAEALRDSDNIKKQKNETSKELKVLKEK 82
           +KL  E    +  +AE LR   +  +      +EL++++E+
Sbjct: 443 EKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQ 483


>d1zeda1 c.76.1.1 (A:1-479) Alkaline phosphatase {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 479

 Score = 24.7 bits (53), Expect = 2.1
 Identities = 5/23 (21%), Positives = 6/23 (26%)

Query: 48 RDRAVSDLAEALRDSDNIKKQKN 70
             A   L  A +        KN
Sbjct: 13 NREAAEALGAAKKLQPAQTAAKN 35


>d1y6va1 c.76.1.1 (A:1-449) Alkaline phosphatase {Escherichia coli
          [TaxId: 562]}
          Length = 449

 Score = 24.3 bits (52), Expect = 2.5
 Identities = 10/21 (47%), Positives = 11/21 (52%)

Query: 50 RAVSDLAEALRDSDNIKKQKN 70
          R   D   ALRDS + K  KN
Sbjct: 24 RLTGDQTAALRDSLSDKPAKN 44


>d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 436

 Score = 23.6 bits (50), Expect = 5.0
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 34 RESIRTLCDKLRKERDRAVSDLAEALRDSDNIKKQKNETSKELKVLKEKMEAQVELERYT 93
          R++   L     + R   +  + +AL+   N    +     +L V KE   A   L+R  
Sbjct: 13 RKAGNILKTISNEGRSDILYKIHDALK--ANAHAIEEANKIDLAVAKETGLADSLLKRLD 70


>d1jqka_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
           {Rhodospirillum rubrum [TaxId: 1085]}
          Length = 610

 Score = 23.7 bits (51), Expect = 5.2
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 41  CDKLRKERDRAVSDLAEAL 59
           C+  + ++D A  DLA++L
Sbjct: 424 CNTTKVQQDSAYVDLAKSL 442


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
          fragment {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 23.2 bits (49), Expect = 7.2
 Identities = 8/43 (18%), Positives = 20/43 (46%)

Query: 50 RAVSDLAEALRDSDNIKKQKNETSKELKVLKEKMEAQVELERY 92
          R ++     +R+  + + +    +KEL  ++ K +    L+ Y
Sbjct: 3  RGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGY 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.126    0.334 

Gapped
Lambda     K      H
   0.267   0.0512    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 312,002
Number of extensions: 12298
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 24
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.4 bits)