BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3838
         (74 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9V9A8|PHTF_DROME Putative homeodomain transcription factor OS=Drosophila
          melanogaster GN=phtf PE=1 SV=2
          Length = 880

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/46 (76%), Positives = 38/46 (82%)

Query: 17 YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          YQK+IG YDKQ+WE TVEQRIL+GF  V  K  KLKTELIDVDLVR
Sbjct: 10 YQKRIGTYDKQEWEKTVEQRILDGFNSVNLKNTKLKTELIDVDLVR 55


>sp|Q8CB19|PHTF2_MOUSE Putative homeodomain transcription factor 2 OS=Mus musculus
          GN=Phtf2 PE=2 SV=2
          Length = 747

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/50 (62%), Positives = 40/50 (80%)

Query: 13 SVIGYQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          +++ YQKKIGAYD+Q WE +VEQR + G  + PKKTA +K +LIDVDLVR
Sbjct: 8  AIVWYQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTAHVKPDLIDVDLVR 57


>sp|Q5ZKN3|PHTF2_CHICK Putative homeodomain transcription factor 2 OS=Gallus gallus
          GN=PHTF2 PE=2 SV=1
          Length = 752

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 36/46 (78%)

Query: 17 YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          YQKKIGAYD+Q WE +VEQR + G  + PKKT  +K +LIDVDLVR
Sbjct: 12 YQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTGHVKPDLIDVDLVR 57


>sp|Q08DA4|PHTF1_BOVIN Putative homeodomain transcription factor 1 OS=Bos taurus
          GN=PHTF1 PE=2 SV=1
          Length = 762

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 35/46 (76%)

Query: 17 YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          YQKKIGAYD+Q WE ++EQ  + GF + PKK   +K +LIDVDL+R
Sbjct: 12 YQKKIGAYDQQIWEKSIEQTQIKGFKNKPKKMGHIKADLIDVDLIR 57


>sp|Q9QZ09|PHTF1_MOUSE Putative homeodomain transcription factor 1 OS=Mus musculus
          GN=Phtf1 PE=1 SV=2
          Length = 761

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 35/46 (76%)

Query: 17 YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          YQKKIGAYD+Q WE ++EQ  + GF + PKK   +K +LIDVDL+R
Sbjct: 12 YQKKIGAYDQQIWEKSIEQTQIKGFKNKPKKMGHIKPDLIDVDLIR 57


>sp|Q9UMS5|PHTF1_HUMAN Putative homeodomain transcription factor 1 OS=Homo sapiens
          GN=PHTF1 PE=2 SV=2
          Length = 762

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 34/46 (73%)

Query: 17 YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          YQKKIGAYD+Q WE ++EQ  + G  + PKK   +K +LIDVDL+R
Sbjct: 12 YQKKIGAYDQQIWEKSIEQTQIKGLKNKPKKMGHIKPDLIDVDLIR 57


>sp|Q8N3S3|PHTF2_HUMAN Putative homeodomain transcription factor 2 OS=Homo sapiens
          GN=PHTF2 PE=2 SV=2
          Length = 785

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 33/46 (71%), Gaps = 4/46 (8%)

Query: 21 IGAYDKQQWETTVEQR----ILNGFTHVPKKTAKLKTELIDVDLVR 62
          IGAYD+Q WE +VEQR    I  G  + PKKTA +K +LIDVDLVR
Sbjct: 50 IGAYDQQIWEKSVEQREIKFIKLGLRNKPKKTAHVKPDLIDVDLVR 95


>sp|Q5UR20|YR366_MIMIV Putative ATP-dependent RNA helicase R366 OS=Acanthamoeba polyphaga
           mimivirus GN=MIMI_R366 PE=3 SV=1
          Length = 1766

 Score = 29.6 bits (65), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 41  FTHVPKKTAKLKTELIDVDLVRVVFIND 68
           FT +PK    LK E I++ L+R++ IND
Sbjct: 466 FTQIPKYWYSLKPEFIEMILIRILDIND 493


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.135    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,539,357
Number of Sequences: 539616
Number of extensions: 784474
Number of successful extensions: 1544
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1535
Number of HSP's gapped (non-prelim): 8
length of query: 74
length of database: 191,569,459
effective HSP length: 45
effective length of query: 29
effective length of database: 167,286,739
effective search space: 4851315431
effective search space used: 4851315431
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)