Query psy3838
Match_columns 74
No_of_seqs 33 out of 35
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 18:43:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3838.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3838hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_D L21, RPL11, 60S ribosom 19.8 29 0.001 24.2 0.6 14 9-22 155-168 (172)
2 3j21_E 50S ribosomal protein L 18.9 29 0.001 24.5 0.4 14 9-22 167-180 (186)
3 2zkr_d 60S ribosomal protein L 18.1 28 0.00095 24.3 0.2 15 9-23 158-172 (178)
4 1vq8_D 50S ribosomal protein L 18.0 28 0.00096 24.3 0.2 14 9-22 159-172 (177)
5 3s6s_A AC-Asp-7; pathogenesis- 17.0 20 0.00069 25.0 -0.8 24 11-34 93-116 (206)
6 3e5d_A Putative glyoxalase I; 15.9 58 0.002 17.9 1.1 14 10-23 14-27 (127)
7 3iz5_E 60S ribosomal protein L 15.8 33 0.0011 24.2 0.1 14 9-22 157-170 (180)
8 1f9z_A Glyoxalase I; beta-alph 13.2 64 0.0022 17.9 0.8 14 10-23 13-26 (135)
9 3ix1_A N-formyl-4-amino-5-amin 12.4 86 0.0029 20.5 1.4 37 21-57 266-302 (302)
10 3g12_A Putative lactoylglutath 12.0 69 0.0024 18.6 0.7 13 10-23 17-29 (128)
No 1
>4a17_D L21, RPL11, 60S ribosomal protein L11; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_D 4a1c_D 4a1e_D
Probab=19.78 E-value=29 Score=24.22 Aligned_cols=14 Identities=0% Similarity=0.066 Sum_probs=11.7
Q ss_pred ccchhhhhhHHhhh
Q psy3838 9 CSVTSVIGYQKKIG 22 (74)
Q Consensus 9 ~~~~~i~wyqkKig 22 (74)
...+|+.|||++.|
T Consensus 155 ~keea~~~~~~~~~ 168 (172)
T 4a17_D 155 SKEECINWFKTEFE 168 (172)
T ss_dssp CHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhcC
Confidence 35899999999976
No 2
>3j21_E 50S ribosomal protein L5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=18.89 E-value=29 Score=24.47 Aligned_cols=14 Identities=7% Similarity=0.181 Sum_probs=11.8
Q ss_pred ccchhhhhhHHhhh
Q psy3838 9 CSVTSVIGYQKKIG 22 (74)
Q Consensus 9 ~~~~~i~wyqkKig 22 (74)
...+|+.|||++.|
T Consensus 167 ~keea~~~~~~~~~ 180 (186)
T 3j21_E 167 TKEEGMVYMMEEFG 180 (186)
T ss_dssp CHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHcC
Confidence 45899999999975
No 3
>2zkr_d 60S ribosomal protein L11; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=18.11 E-value=28 Score=24.30 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=12.1
Q ss_pred ccchhhhhhHHhhhc
Q psy3838 9 CSVTSVIGYQKKIGA 23 (74)
Q Consensus 9 ~~~~~i~wyqkKig~ 23 (74)
..++|+.|||++.|.
T Consensus 158 ~k~e~~~~~~~~~~~ 172 (178)
T 2zkr_d 158 SKEEAMRWFQQKYDG 172 (178)
T ss_dssp CHHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHhCCE
Confidence 358999999998763
No 4
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D* 1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D* 1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D* 1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ...
Probab=18.01 E-value=28 Score=24.34 Aligned_cols=14 Identities=7% Similarity=-0.050 Sum_probs=11.7
Q ss_pred ccchhhhhhHHhhh
Q psy3838 9 CSVTSVIGYQKKIG 22 (74)
Q Consensus 9 ~~~~~i~wyqkKig 22 (74)
...+|+.|||+++|
T Consensus 159 ~k~ea~~~~~~~~~ 172 (177)
T 1vq8_D 159 NPADAVAFIESTYD 172 (177)
T ss_dssp CHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHhcC
Confidence 35899999999875
No 5
>3s6s_A AC-Asp-7; pathogenesis-related protein, SCP/TAPS, unknown function; 2.40A {Ancylostoma caninum} PDB: 3s6v_A 3s6u_A
Probab=16.97 E-value=20 Score=24.95 Aligned_cols=24 Identities=0% Similarity=0.029 Sum_probs=19.6
Q ss_pred chhhhhhHHhhhchhHHHHHHHhh
Q psy3838 11 VTSVIGYQKKIGAYDKQQWETTVE 34 (74)
Q Consensus 11 ~~~i~wyqkKig~YD~q~WEKsvE 34 (74)
...-+||.+.+|-|-|=+|++|-.
T Consensus 93 ~av~~W~~E~~gHfTQmVW~~Tt~ 116 (206)
T 3s6s_A 93 KEILETFSADKNSMRQVVYPKATR 116 (206)
T ss_dssp HHHHHHHTTCHHHHHHHHCTTCCE
T ss_pred HHHHHHHhhhhhhHHHHHHHhhce
Confidence 344579999999999999998743
No 6
>3e5d_A Putative glyoxalase I; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 2.70A {Listeria monocytogenes str}
Probab=15.87 E-value=58 Score=17.88 Aligned_cols=14 Identities=21% Similarity=0.005 Sum_probs=11.6
Q ss_pred cchhhhhhHHhhhc
Q psy3838 10 SVTSVIGYQKKIGA 23 (74)
Q Consensus 10 ~~~~i~wyqkKig~ 23 (74)
...++.||++.+|.
T Consensus 14 ~~~a~~FY~~~lG~ 27 (127)
T 3e5d_A 14 LEQMKQFYVTYFGA 27 (127)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCC
Confidence 36789999999985
No 7
>3iz5_E 60S ribosomal protein L11 (L5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_E 3izc_E 3izs_E 3o58_K 3o5h_K 3u5e_J 3u5i_J 4b6a_J 1s1i_J 2noq_H 3j0q_k 3jyw_J
Probab=15.78 E-value=33 Score=24.17 Aligned_cols=14 Identities=14% Similarity=0.052 Sum_probs=11.4
Q ss_pred ccchhhhhhHHhhh
Q psy3838 9 CSVTSVIGYQKKIG 22 (74)
Q Consensus 9 ~~~~~i~wyqkKig 22 (74)
...+|+.|||++.|
T Consensus 157 ~keea~~~~~~~~~ 170 (180)
T 3iz5_E 157 TKEDAMKWFQVKYE 170 (180)
T ss_dssp CHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHhcC
Confidence 45899999999854
No 8
>1f9z_A Glyoxalase I; beta-alpha-beta-BETA-beta motif, protein-NI(II) complex, homodimer, lyase; 1.50A {Escherichia coli} SCOP: d.32.1.1 PDB: 1fa5_A 1fa6_A 1fa7_A 1fa8_A
Probab=13.17 E-value=64 Score=17.92 Aligned_cols=14 Identities=29% Similarity=0.252 Sum_probs=11.6
Q ss_pred cchhhhhhHHhhhc
Q psy3838 10 SVTSVIGYQKKIGA 23 (74)
Q Consensus 10 ~~~~i~wyqkKig~ 23 (74)
.+.++.||++.+|.
T Consensus 13 ~~~a~~FY~~~lG~ 26 (135)
T 1f9z_A 13 LQRSIDFYTKVLGM 26 (135)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhccCc
Confidence 36789999999885
No 9
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=12.44 E-value=86 Score=20.47 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=22.2
Q ss_pred hhchhHHHHHHHhhhhhccCCccccceecccCCceEE
Q psy3838 21 IGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELID 57 (74)
Q Consensus 21 ig~YD~q~WEKsvEq~~l~gl~~kpkk~~~iKpdLID 57 (74)
+|..+.+.|++..+.-.-.|+-.++..-..+...|||
T Consensus 266 ~g~~~~~~~~~~~~~l~~~G~i~~~~~~~~~~~n~~~ 302 (302)
T 3ix1_A 266 FGGQDAESWEEVISWLDAHDWLEQPVVAEDAFSSITD 302 (302)
T ss_dssp TBCCCHHHHHHHHHHHHHTTCCSSCCCHHHHBCCCC-
T ss_pred CCccCHHHHHHHHHHHHHCCCCCCCCCHHHHhccCCC
Confidence 6777888888888775555665444444444444443
No 10
>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}
Probab=11.98 E-value=69 Score=18.63 Aligned_cols=13 Identities=23% Similarity=0.041 Sum_probs=10.9
Q ss_pred cchhhhhhHHhhhc
Q psy3838 10 SVTSVIGYQKKIGA 23 (74)
Q Consensus 10 ~~~~i~wyqkKig~ 23 (74)
-..++.||++ +|.
T Consensus 17 ~~~a~~FY~~-LG~ 29 (128)
T 3g12_A 17 LQGMLGFYRI-IGF 29 (128)
T ss_dssp HHHHHHHHHH-HTC
T ss_pred HHHHHHHHHH-CCC
Confidence 3678999999 994
Done!