RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3838
         (74 letters)



>gnl|CDD|152564 pfam12129, Phtf-FEM1B_bdg, Male germ-cell putative homeodomain
          transcription factor.  This domain is found in bacteria
          and eukaryotes, and is typically between 101 and 140
          amino acids in length. Phtf proteins do not display any
          sequence similarity to known or predicted proteins, but
          their conservation among species suggests an essential
          function. The 84 kDa Phtf1 protein is an integral
          membrane protein, anchored to a cell membrane by six to
          eight trans-membrane domains, that is associated with a
          domain of the endoplasmic reticulum (ER) juxtaposed to
          the Golgi apparatus. It is present during meiosis and
          spermiogenesis, and, by the end of spermiogenesis, is
          released from the mature spermatozoon within the
          residual bodies. Phtf1 enhances the binding of FEM1B
          -feminisation homologue 1B - to cell membranes. Fem-1
          was initially identified in the signaling pathway for
          sex determination, as well as being implicated in
          apoptosis, but its biochemical role is still unclear,
          and neither FEM1B nor PHTF1 is directly implicated in
          apoptosis in spermatogenesis. It is the ANK domain of
          FEM1B that is necessary for the interaction with the
          N-terminal region of Phtf1.
          Length = 159

 Score = 83.1 bits (205), Expect = 4e-22
 Identities = 29/46 (63%), Positives = 36/46 (78%)

Query: 17 YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          YQKKIGAYD+Q WE ++EQ+I+ G  + PKK   LK +LIDVDLVR
Sbjct: 10 YQKKIGAYDQQIWEKSIEQKIIKGLNNKPKKNGHLKPDLIDVDLVR 55


>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate
           transaminase; Provisional.
          Length = 472

 Score = 27.6 bits (61), Expect = 0.55
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 12  TSVIGY-QKKIGAYDKQQWETTVEQRILNGFTHVP 45
           T++ G+ + +IGA    Q    +EQ +L GFTH P
Sbjct: 75  TNLFGHAEPRIGAAIAAQ-AGELEQVMLAGFTHEP 108


>gnl|CDD|236303 PRK08579, PRK08579, anaerobic ribonucleoside triphosphate
           reductase; Provisional.
          Length = 625

 Score = 27.0 bits (60), Expect = 0.72
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 12  TSVIGYQKKIGAYDKQQWETTVEQRILNG-FTHV-------PKKTAKLKTELIDVDLV 61
           TS+  Y   +  +D+ + E  V+Q    G   H+       P+  AKL   +++  LV
Sbjct: 503 TSIAPYYGPLELWDRIEIEEKVQQEFTGGVMMHIFLGEEPDPEALAKLTKRIMNTKLV 560


>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase;
           Reviewed.
          Length = 314

 Score = 26.0 bits (58), Expect = 1.4
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 66  INDFKSIE 73
           +NDFKS+E
Sbjct: 208 LNDFKSVE 215


>gnl|CDD|111290 pfam02381, MraZ, MraZ protein.  This small 70 amino acid domain
          is found duplicated in a family of bacterial proteins.
          These proteins may be DNA-binding transcription factors
          (Pers. comm. A Andreeva & A Murzin).
          Length = 72

 Score = 25.3 bits (56), Expect = 1.5
 Identities = 6/35 (17%), Positives = 13/35 (37%)

Query: 14 VIGYQKKIGAYDKQQWETTVEQRILNGFTHVPKKT 48
           IG    +  + + +WE   E+     F+    + 
Sbjct: 34 TIGQDNCLEIWPRAEWEQYEEKANEESFSAKDARA 68


>gnl|CDD|240109 cd04792, LanM-like, LanM-like proteins. LanM is a bifunctional
           enzyme, involved in the synthesis of class II
           lantibiotics. It is responsible for both the dehydration
           and the cyclization of the precursor-peptide during
           lantibiotic synthesis. The C-terminal domain shows
           similarity to LanC, the cyclase component of the lan
           operon, but the N terminus seems to be unrelated to the
           dehydratase, LanB.
          Length = 825

 Score = 24.2 bits (53), Expect = 7.6
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 7/36 (19%)

Query: 37  ILNGFTHVPKKTAKLKTELIDVDL-------VRVVF 65
           I+ GF    K   K K EL+ + L       VRV+F
Sbjct: 319 IVEGFRETYKFFLKHKEELLKIILNFASNVTVRVIF 354


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,580,451
Number of extensions: 257979
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 8
Length of query: 74
Length of database: 10,937,602
Length adjustment: 44
Effective length of query: 30
Effective length of database: 8,986,026
Effective search space: 269580780
Effective search space used: 269580780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.5 bits)