RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3838
         (74 letters)



>1x1i_A Xanthan lyase; alpha/alpha barrel, beta sandwich; HET: 46M; 1.80A
           {Bacillus SP} SCOP: a.102.3.2 b.24.1.1 b.30.5.2 PDB:
           1x1h_A* 1x1j_A* 2e22_A* 1j0m_A 1j0n_A* 2e24_A
          Length = 752

 Score = 24.7 bits (53), Expect = 3.1
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 14  VIGYQKKIGAYDKQQWETTVEQRILNG 40
           ++     I +      ET V+ R LNG
Sbjct: 493 IVALGSGISSTAGIPIETVVDNRKLNG 519


>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like,
          oxidoreductase, competence, redox-active center; 1.40A
          {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
          Length = 202

 Score = 24.7 bits (54), Expect = 3.3
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 50 KLKTELIDVDLVRVVFIN 67
          K++ + ID   V+  F+N
Sbjct: 54 KIQKDFIDKGDVKFSFVN 71


>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox
          protein, protein folding, redox active centre; 1.81A
          {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
          Length = 186

 Score = 23.9 bits (52), Expect = 5.3
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 50 KLKTELIDVDLVRVVFIN 67
          KL+   ID   V   F+N
Sbjct: 36 KLRKNYIDNHKVEYQFVN 53


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0682    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,121,816
Number of extensions: 50297
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 3
Length of query: 74
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 30
Effective length of database: 5,473,269
Effective search space: 164198070
Effective search space used: 164198070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.5 bits)