RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3838
         (74 letters)



>d1h32a1 a.3.1.8 (A:1-150) Di-heme cytochrome c SoxA {Rhodovulum
           sulfidophilum [TaxId: 35806]}
          Length = 150

 Score = 28.3 bits (63), Expect = 0.057
 Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 1/38 (2%)

Query: 1   MSFHKCHMCSVTSVIGYQKKIGAYD-KQQWETTVEQRI 37
            +   CH      + G +     Y        TVEQ I
Sbjct: 74  KACADCHGAVDDGMYGLRAVYPKYVESAGKVRTVEQMI 111


>d1cb8a3 b.30.5.2 (A:336-599) Chondroitinase AC {Pedobacter
           heparinus (Flavobacterium heparinum) [TaxId: 984]}
          Length = 264

 Score = 24.5 bits (53), Expect = 1.4
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 20  KIGAYDKQQWETTVEQRILNG 40
            I +   +   TT+ Q  LNG
Sbjct: 140 GINSNAPENITTTLNQSWLNG 160


>d1x1ia3 b.30.5.2 (A:387-659) Xanthan lyase {Bacillus sp. gl1
           [TaxId: 84635]}
          Length = 273

 Score = 23.7 bits (51), Expect = 2.5
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 20  KIGAYDKQQWETTVEQRILNG 40
            I +      ET V+ R LNG
Sbjct: 138 GISSTAGIPIETVVDNRKLNG 158


>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1,
          OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId:
          9823]}
          Length = 200

 Score = 23.6 bits (51), Expect = 2.6
 Identities = 8/17 (47%), Positives = 9/17 (52%), Gaps = 2/17 (11%)

Query: 57 DVDLVRVVFINDFKSIE 73
          D DLV  VF+    S E
Sbjct: 74 DADLV--VFLTKLTSFE 88


>d1n7oa3 b.30.5.2 (A:541-814) Hyaluronate lyase {Streptococcus
           pneumoniae [TaxId: 1313]}
          Length = 274

 Score = 23.3 bits (50), Expect = 3.5
 Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 4/54 (7%)

Query: 20  KIGAYDKQQWETTVEQRILNG----FTHVPKKTAKLKTELIDVDLVRVVFINDF 69
            I         TT++QR L        +V  K A L  +  D    + VF+   
Sbjct: 143 NIQNTSTDTAATTIDQRKLESSNPYKVYVNDKEASLTEQEKDYPETQSVFLESS 196


>d1hn0a4 b.30.5.2 (A:619-899) Chondroitin ABC lyase I {Proteus
           vulgaris [TaxId: 585]}
          Length = 281

 Score = 22.5 bits (48), Expect = 6.0
 Identities = 4/11 (36%), Positives = 6/11 (54%)

Query: 30  ETTVEQRILNG 40
           ETT+ Q  +  
Sbjct: 164 ETTLFQHAITP 174


>d1rwha3 b.30.5.2 (A:373-644) Chondroitinase AC {Arthrobacter
           aurescens [TaxId: 43663]}
          Length = 272

 Score = 22.6 bits (48), Expect = 6.2
 Identities = 6/25 (24%), Positives = 11/25 (44%)

Query: 20  KIGAYDKQQWETTVEQRILNGFTHV 44
            I      + ET V+ R L+  ++ 
Sbjct: 145 DISTASGAKVETIVDHRNLHQGSNT 169


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0489    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 283,674
Number of extensions: 10230
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 8
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.5 bits)