BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy384
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NZ0|A Chain A, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|C Chain C, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 180
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 50/74 (67%)
Query: 28 MQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQID 87
+DF+ LS + RG+V EKL+W F LYD+N DG I K+EM ++V +IYDM+G+ P +
Sbjct: 72 FEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLK 131
Query: 88 DTTVKAHVDKIFSE 101
+ T + HVD F +
Sbjct: 132 EDTPRQHVDVFFQK 145
>pdb|1S6C|A Chain A, Crystal Structure Of The Complex Between Kchip1 And Kv4.2
N1-30
Length = 183
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 50/74 (67%)
Query: 28 MQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQID 87
+DF+ LS + RG+V EKL+W F LYD+N DG I K+EM ++V +IYDM+G+ P +
Sbjct: 75 FEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLK 134
Query: 88 DTTVKAHVDKIFSE 101
+ T + HVD F +
Sbjct: 135 EDTPRQHVDVFFQK 148
>pdb|1S1E|A Chain A, Crystal Structure Of Kv Channel-Interacting Protein 1
(Kchip-1)
Length = 224
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 29 QDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDD 88
+DF+ LS + RG+V EKL+W F LYD+N DG I K+EM ++V +IYDM+G+ P + +
Sbjct: 109 EDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKE 168
Query: 89 TTVKAHVDKIFSE 101
T + HVD F +
Sbjct: 169 DTPRQHVDVFFQK 181
>pdb|2I2R|E Chain E, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|F Chain F, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|G Chain G, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|H Chain H, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|M Chain M, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|N Chain N, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|O Chain O, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|P Chain P, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 180
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%)
Query: 28 MQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQID 87
+DF+ LS + RG+V EKL+W F LYD+N DG I K+EM ++V +IYDM+G P +
Sbjct: 72 FEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGAYTYPVLA 131
Query: 88 DTTVKAHVDKIFSE 101
+ T + HVD F +
Sbjct: 132 EDTPRQHVDVFFQK 145
>pdb|3DD4|A Chain A, Structural Basis Of Kchip4a Modulation Of Kv4.3 Slow
Inactivation
Length = 229
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 49/71 (69%)
Query: 29 QDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDD 88
+DF+ LS + RG+VQEKL W F LYD+N DG ITK+EM +++ +IYDM+G+ P + +
Sbjct: 122 EDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKE 181
Query: 89 TTVKAHVDKIF 99
+ HV+ F
Sbjct: 182 DAPRQHVETFF 192
>pdb|2JUL|A Chain A, Nmr Structure Of Dream
Length = 256
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 50/74 (67%)
Query: 28 MQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQID 87
+DF+ LS + RG+V EKL+W F LYD+N DG ITK+EM ++ SIYDM+GR+ P +
Sbjct: 148 FEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILR 207
Query: 88 DTTVKAHVDKIFSE 101
+ HV++ F +
Sbjct: 208 EDAPLEHVERFFQK 221
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 49/71 (69%)
Query: 30 DFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDT 89
+F+ LS SRG++ EKL+W F LYDL+ DG IT+ EM ++V +IY M+G +E ++
Sbjct: 84 EFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEEN 143
Query: 90 TVKAHVDKIFS 100
T + VD+IF+
Sbjct: 144 TPEKRVDRIFA 154
>pdb|1FPW|A Chain A, Structure Of Yeast Frequenin
pdb|2JU0|A Chain A, Structure Of Yeast Frequenin Bound To Pdtins 4-Kinase
Length = 190
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 28 MQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQID 87
++F+ +LS SRG+++EKL W F LYDLN DG IT EM +V S+Y M+G + D
Sbjct: 82 FEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNED 141
Query: 88 DTTVKAHVDKIF 99
+ T + V KIF
Sbjct: 142 EATPEMRVKKIF 153
>pdb|2E6W|A Chain A, Solution Structure And Calcium Binding Properties Of Ef-
Hands 3 And 4 Of Calsenilin
Length = 100
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%)
Query: 41 GSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIF 99
G+V EKL+W F LYD+N DG ITK+EM ++ SIYDM+GR+ P + + HV++ F
Sbjct: 5 GTVHEKLKWAFNLYDINKDGYITKEEMLAIMKSIYDMMGRHTYPILREDAPAEHVERFF 63
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
Length = 193
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 50/74 (67%)
Query: 28 MQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQID 87
++F+ LS SRG +++KL+W F +YDL+G+G I+K EM E+V +IY M+ ++ D
Sbjct: 82 FREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPED 141
Query: 88 DTTVKAHVDKIFSE 101
++T + +KIF +
Sbjct: 142 ESTPEKRTEKIFRQ 155
>pdb|2L2E|A Chain A, Solution Nmr Structure Of Myristoylated Ncs1p In Apo Form
Length = 190
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 28 MQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQID 87
++F+ LS SRG + +KL W F LYDL+ +GLI+ EM +V +IY M+G ++ D
Sbjct: 82 FKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPED 141
Query: 88 DTTVKAHVDKIFS 100
+ T + V+KIF+
Sbjct: 142 EDTPEKRVNKIFN 154
>pdb|1JSA|A Chain A, Myristoylated Recoverin With Two Calciums Bound, Nmr, 24
Structures
Length = 201
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 28 MQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQI- 86
++++ L S G +KL+W F LYD++G+G I+K E+ E+VT+I+ M+ +
Sbjct: 82 FKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLP 141
Query: 87 -DDTTVKAHVDKIF 99
D+ T + +KI+
Sbjct: 142 EDENTPEKRAEKIW 155
>pdb|2I94|A Chain A, Nmr Structure Of Recoverin Bound To Rhodopsin Kinase
Length = 202
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 28 MQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQI- 86
++++ L S G +KL+W F LYD++G+G I+K E+ E+VT+I+ M+ +
Sbjct: 83 FKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLP 142
Query: 87 -DDTTVKAHVDKIF 99
D+ T + +KI+
Sbjct: 143 EDENTPEKRAEKIW 156
>pdb|1OMR|A Chain A, Non-Myristoylated Wild-Type Bovine Recoverin With Calcium
Bound To Ef- Hand 3
pdb|1REC|A Chain A, Three-Dimensional Structure Of Recoverin, A Calcium Sensor
In Vision
pdb|1IKU|A Chain A, Myristoylated Recoverin In The Calcium-Free State, Nmr, 22
Structures
Length = 201
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 28 MQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQI- 86
++++ L S G +KL+W F LYD++G+G I+K E+ E+VT+I+ M+ +
Sbjct: 82 FKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLP 141
Query: 87 -DDTTVKAHVDKIF 99
D+ T + +KI+
Sbjct: 142 EDENTPEKRAEKIW 155
>pdb|2HET|A Chain A, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|B Chain B, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|C Chain C, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|D Chain D, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
Length = 189
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 28 MQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQI- 86
++++ L S G +KL+W F LYD++G+G I+K E+ E+VT+I+ M+ +
Sbjct: 82 FKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLP 141
Query: 87 -DDTTVKAHVDKIF 99
D+ T + +KI+
Sbjct: 142 EDENTPEKRAEKIW 155
>pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant, E85q
Length = 201
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 35 LSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQI--DDTTVK 92
L S G +KL+W F LYD++G+G I+K E+ E+VT+I+ M+ + D+ T +
Sbjct: 89 LHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENTPE 148
Query: 93 AHVDKIF 99
+KI+
Sbjct: 149 KRAEKIW 155
>pdb|1OMV|A Chain A, Non-Myristoylated Bovine Recoverin (E85q Mutant) With
Calcium Bound To Ef-Hand 3
Length = 201
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 35 LSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQI--DDTTVK 92
L S G +KL+W F LYD++G+G I+K E+ E+VT+I+ M+ + D+ T +
Sbjct: 89 LHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENTPE 148
Query: 93 AHVDKIF 99
+KI+
Sbjct: 149 KRAEKIW 155
>pdb|2D8N|A Chain A, Crystal Structure Of Human Recoverin At 2.2 A Resolution
Length = 207
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 28 MQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQ-- 85
++++ L + G +KL+W F LYD++G+G I+K E+ E+V +I+ + I P+
Sbjct: 90 FKEYVIALHXTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVXAIF----KXITPEDV 145
Query: 86 ----IDDTTVKAHVDKIF 99
D+ T + +KI+
Sbjct: 146 KLLPDDENTPEKRAEKIW 163
>pdb|1JBA|A Chain A, Unmyristoylated Gcap-2 With Three Calcium Ions Bound
Length = 204
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 34/48 (70%)
Query: 30 DFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDM 77
+++ L+ V RG+++ KL+W F +YD + +G I ++E+ ++V SIY +
Sbjct: 80 EYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKL 127
>pdb|2R2I|A Chain A, Myristoylated Guanylate Cyclase Activating Protein-1 With
Calcium Bound
Length = 198
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%)
Query: 30 DFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+++ LS V +G V +KL+W F LYD++G+G I + E+ ++ +I
Sbjct: 73 EYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAI 117
>pdb|2LHI|A Chain A, Solution Structure Of Ca2+CNA1 PEPTIDE-Bound Ycam
Length = 176
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 30 DFLGILSR--VSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQID 87
+FL ++SR S S QE L+ F ++D NGDGLI+ E++ V+TSI + L + ++D
Sbjct: 68 EFLALMSRQLKSNDSEQELLEA-FKVFDKNGDGLISAAELKHVLTSIGEKL---TDAEVD 123
Query: 88 D 88
D
Sbjct: 124 D 124
>pdb|1LKJ|A Chain A, Nmr Structure Of Apo Calmodulin From Yeast Saccharomyces
Cerevisiae
Length = 146
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 30 DFLGILSRV--SRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQID 87
+FL ++SR S S QE L+ F ++D NGDGLI+ E++ V+TSI + L + ++D
Sbjct: 67 EFLALMSRQLKSNDSEQELLEA-FKVFDKNGDGLISAAELKHVLTSIGEKL---TDAEVD 122
Query: 88 D 88
D
Sbjct: 123 D 123
>pdb|2LHH|A Chain A, Solution Structure Of Ca2+-Bound Ycam
Length = 128
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 30 DFLGILSRV--SRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDML 78
+FL ++SR S S QE L+ F ++D NGDGLI+ E++ V+TSI + L
Sbjct: 67 EFLALMSRQLKSNDSEQELLEA-FKVFDKNGDGLISAAELKHVLTSIGEKL 116
>pdb|4DS7|A Chain A, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|B Chain B, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|C Chain C, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|D Chain D, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
Length = 147
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 30 DFLGILSR-VSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDML 78
+FL ++SR + +++L F ++D NGDGLI+ E++ V+TSI + L
Sbjct: 68 EFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKL 117
>pdb|2GGZ|A Chain A, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
pdb|2GGZ|B Chain B, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
Length = 211
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 33/51 (64%)
Query: 30 DFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGR 80
+F+ ++ + + +++KL+W F LYD +G+G I K E+ ++ ++ + G+
Sbjct: 78 EFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQ 128
>pdb|1UHN|A Chain A, The Crystal Structure Of The Calcium Binding Protein
Atcbl2 From Arabidopsis Thaliana
Length = 189
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 41 GSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFS 100
+ +K+ + F LYDL G I ++E++++V + G N++ DT ++ +DK F
Sbjct: 87 APIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLK----DTVIEDIIDKTFE 142
Query: 101 E 101
E
Sbjct: 143 E 143
>pdb|2ZFD|A Chain A, The Crystal Structure Of Plant Specific Calcium Binding
Protein Atcbl2 In Complex With The Regulatory Domain Of
Atcipk14
Length = 226
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 40 RGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIF 99
+ +K+ + F LYDL G I ++E++++V + G N++ DT ++ +DK F
Sbjct: 117 NAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLK----DTVIEDIIDKTF 172
Query: 100 SE 101
E
Sbjct: 173 EE 174
>pdb|1VRK|A Chain A, The 1.9 Angstrom Structure Of E84k-Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 30 DFLGILSRVSRGS-VQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDD 88
+FL +++R + + +EKL+ F ++D +G+G I+ E+ V+T++ + L + ++D+
Sbjct: 67 EFLNLMARKMKDTDSEEKLKEAFRVFDKDGNGFISAAELRHVMTNLGEKL---TDEEVDE 123
Query: 89 TTVKAHVD 96
+A VD
Sbjct: 124 MIREADVD 131
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 42
>pdb|2EHB|A Chain A, The Structure Of The C-Terminal Domain Of The Protein
Kinase Atsos2 Bound To The Calcium Sensor Atsos3
Length = 207
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 41 GSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
V EK+++ F LYDL G I ++E++E+V ++
Sbjct: 107 APVHEKVKFAFKLYDLRQTGFIEREELKEMVVAL 140
>pdb|1V1F|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) And Manganese(Ii) Ions
pdb|1V1G|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) Ion
Length = 222
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 41 GSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
V EK+++ F LYDL G I ++E++E+V ++
Sbjct: 107 APVHEKVKFAFKLYDLRQTGFIEREELKEMVVAL 140
>pdb|1DEG|A Chain A, The Linker Of Des-Glu84 Calmodulin Is Bent As Seen In The
Crystal Structure
Length = 142
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 30 DFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDT 89
+FL +++R + + E+++ F ++D +G+G I+ E+ V+T++ + L + ++D+
Sbjct: 63 EFLTMMARKMKDTDSEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKL---TDEEVDEM 119
Query: 90 TVKAHVD 96
+A++D
Sbjct: 120 IREANID 126
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 7 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 38
>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 170
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 44/70 (62%), Gaps = 8/70 (11%)
Query: 29 QDFLGILSRVS-RGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQID 87
++F+ +S+ S +G ++KL++ F +YD++ DG I+ E+ +V+ M+G N++
Sbjct: 73 KEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKM---MVGNNLK---- 125
Query: 88 DTTVKAHVDK 97
DT ++ VDK
Sbjct: 126 DTQLQQIVDK 135
>pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 169
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 28 MQDFLGILSRVS-RGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQI 86
++F+ +S+ S +G ++KL++ F +YD++ DG I+ E+ +V+ M+G N++
Sbjct: 71 FKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKM---MVGNNLK--- 124
Query: 87 DDTTVKAHVDK 97
DT ++ VDK
Sbjct: 125 -DTQLQQIVDK 134
>pdb|2P6B|B Chain B, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
pdb|2P6B|D Chain D, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
Length = 156
Score = 32.7 bits (73), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 44/70 (62%), Gaps = 8/70 (11%)
Query: 29 QDFLGILSRVS-RGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQID 87
++F+ +S+ S +G ++KL++ F +YD++ DG I+ E+ +V+ M+G N++
Sbjct: 59 KEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKM---MVGNNLK---- 111
Query: 88 DTTVKAHVDK 97
DT ++ VDK
Sbjct: 112 DTQLQQIVDK 121
>pdb|3LL8|B Chain B, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
pdb|3LL8|D Chain D, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
Length = 155
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 28 MQDFLGILSRVS-RGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQI 86
++F+ +S+ S +G ++KL++ F +YD++ DG I+ E+ +V+ M+G N++
Sbjct: 57 FKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKM---MVGNNLK--- 110
Query: 87 DDTTVKAHVDK 97
DT ++ VDK
Sbjct: 111 -DTQLQQIVDK 120
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 32 LGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEE---VVTSIYDMLG--RNIEPQI 86
L I S+++ +++L IF D NGDG + KKE+ E V+ + + LG +N+E ++
Sbjct: 342 LFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEV 401
Query: 87 DDTTVKAHVDK 97
D+ + DK
Sbjct: 402 DNILKEVDFDK 412
>pdb|2LMT|A Chain A, Nmr Structure Of Androcam
pdb|2LMU|A Chain A, Androcam At High Calcium
pdb|2LMV|A Chain A, Androcam At High Calcium With Three Explicit Ca2+
Length = 148
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 30 DFLGILSRVSRGS-VQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI-EPQID 87
+F GI+++ R + +E+++ F ++D +GDG I+ E+ V+ + LG + + +ID
Sbjct: 67 EFCGIMAKQMRETDTEEEMREAFKIFDRDGDGFISPAELRFVMIN----LGEKVTDEEID 122
Query: 88 DTTVKAHVD 96
+ +A D
Sbjct: 123 EMIREADFD 131
>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal
Troponin C
pdb|1TN4|A Chain A, Four Calcium Tnc
pdb|2TN4|A Chain A, Four Calcium Tnc
Length = 159
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 39 SRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73
++G +E+L +F ++D N DG I +E+ E+ +
Sbjct: 87 AKGKSEEELAELFRIFDRNADGYIDAEELAEIFRA 121
>pdb|2L4H|A Chain A, The Solution Structure Of Calcium Bound Cib1
pdb|2L4I|A Chain A, The Solution Structure Of Magnesium Bound Cib1
pdb|2LM5|A Chain A, Solution Structure Of Ca2+-Cib1 In Complex With The
Cytoplasmic Domain Of The Integrin Aiib Subunit
Length = 214
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 28 MQDFLGILSRVSRGSVQE-KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQI 86
+DFL +LS S + + K + F ++D + DG + ++++ +V + G + ++
Sbjct: 111 FEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNC---LTGEGEDTRL 167
Query: 87 DDTTVKAHVDKIFSE 101
+ +K +D I E
Sbjct: 168 SASEMKQLIDNILEE 182
>pdb|1DGU|A Chain A, Homology-Based Model Of Calcium-Saturated Cib (Calcium-And
Integrin-Binding Protein)
pdb|1DGV|A Chain A, Homology-Based Model Of Apo Cib (Calcium-And Integrin-
Binding Protein)
pdb|1XO5|A Chain A, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1XO5|B Chain B, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1Y1A|A Chain A, Crystal Structure Of Calcium And Integrin Binding Protein
pdb|1Y1A|B Chain B, Crystal Structure Of Calcium And Integrin Binding Protein
Length = 183
Score = 28.9 bits (63), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 28 MQDFLGILSRVSRGSVQE-KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQI 86
+DFL +LS S + + K + F ++D + DG + ++++ +V + G + ++
Sbjct: 80 FEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNC---LTGEGEDTRL 136
Query: 87 DDTTVKAHVDKIFSE 101
+ +K +D I E
Sbjct: 137 SASEMKQLIDNILEE 151
>pdb|2KSZ|A Chain A, The Solution Structure Of The Magnesium Bound Soybean
Calmod Isoform 4 N-Domain
Length = 76
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 51 FGLYDLNGDGLITKKEMEEVVTSI 74
FGL+D +GDG IT +E+ V+ S+
Sbjct: 16 FGLFDKDGDGCITVEELATVIRSL 39
>pdb|1FI5|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac
Troponin C Bound To The N Terminal Domain Of Cardiac
Troponin I.
pdb|1SBJ|A Chain A, Nmr Structure Of The Mg2+-Loaded C Terminal Domain Of
Cardiac Troponin C Bound To The N Terminal Domain Of
Cardiac Troponin I
pdb|1SCV|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac
Troponin C Bound To The N Terminal Domain Of Cardiac
Troponin I
Length = 81
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 24 VISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEM 67
++ CM+D S+G +E+L +F ++D N DG I +E+
Sbjct: 1 MVRCMKD-------DSKGKTEEELSDLFRMFDKNADGYIDLEEL 37
>pdb|2ROA|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 N-Terminal Domain
Length = 79
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 51 FGLYDLNGDGLITKKEMEEVVTSI 74
FGL+D +GDG IT +E+ V+ S+
Sbjct: 16 FGLFDKDGDGCITVEELATVIRSL 39
>pdb|1LA0|A Chain A, Solution Structure Of Calcium Saturated Cardiac Troponin C
In The Troponin C-Troponin I Complex
Length = 161
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 24 VISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEM 67
++ CM+D S+G +E+L +F ++D N DG I +E+
Sbjct: 81 MVRCMKD-------DSKGKTEEELSDLFRMFDKNADGYIDLEEL 117
>pdb|2L1W|A Chain A, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 149
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 51 FGLYDLNGDGLITKKEMEEVVTSI 74
FGL+D +GDG IT +E+ V+ S+
Sbjct: 16 FGLFDKDGDGCITVEELATVIRSL 39
>pdb|2I08|A Chain A, Solvation Effect In Conformational Changes Of Ef-Hand
Proteins: X-Ray Structure Of Ca2+-Saturated Double
Mutant Q41l-K75i Of N-Domain Of Calmodulin
Length = 78
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+ + F LYD +GDG IT KE+ V+ S+
Sbjct: 11 EFKEAFSLYDKDGDGTITTKELGTVMRSL 39
>pdb|1A2X|A Chain A, Complex Of Troponin C With A 47 Residue (1-47) Fragment Of
Troponin I
Length = 159
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 39 SRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73
++G +E+L F ++D N DG I +E+ E+ +
Sbjct: 87 AKGKSEEELAECFRIFDRNADGYIDAEELAEIFRA 121
>pdb|3IFK|A Chain A, Crystal Structure Of Calcium-Saturated Calmodulin
N-Terminal Domain Fragment, Residues 1-90
pdb|3IFK|B Chain B, Crystal Structure Of Calcium-Saturated Calmodulin
N-Terminal Domain Fragment, Residues 1-90
Length = 90
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 42
>pdb|1CLM|A Chain A, Structure Of Paramecium Tetraurelia Calmodulin At 1.8
Angstroms Resolution
Length = 148
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 11 EFKEAFALFDKDGDGTITTKELGTVMRS----LGQN 42
>pdb|1EXR|A Chain A, The 1.0 Angstrom Crystal Structure Of Ca+2 Bound
Calmodulin
pdb|1N0Y|A Chain A, Crystal Structure Of Pb-Bound Calmodulin
pdb|1N0Y|B Chain B, Crystal Structure Of Pb-Bound Calmodulin
pdb|1OSA|A Chain A, Crystal Structure Of Recombinant Paramecium Tetraurelia
Calmodulin At 1.68 Angstroms Resolution
Length = 148
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 11 EFKEAFALFDKDGDGTITTKELGTVMRS----LGQN 42
>pdb|1SW8|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
N60d Calmodulin Refined With Paramagnetism Based
Strategy
Length = 79
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 42
>pdb|2LLO|A Chain A, Solution Nmr-Derived Structure Of Calmodulin N-Lobe
Bound With Er Alpha Peptide
Length = 80
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 42
>pdb|2K0J|A Chain A, Solution Structure Of Cam Complexed To Drp1p
pdb|2K61|A Chain A, Solution Structure Of Cam Complexed To Dapk Peptide
Length = 148
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 42
>pdb|2LV6|A Chain A, The Complex Between Ca-calmodulin And Skeletal Muscle
Myosin Light Chain Kinase From Combination Of Nmr And
Aqueous And Contrast-matched Saxs Data
Length = 148
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 42
>pdb|2BBM|A Chain A, Solution Structure Of A Calmodulin-Target Peptide
Complex By Multidimensional Nmr
pdb|2BBN|A Chain A, Solution Structure Of A Calmodulin-Target Peptide
Complex By Multidimensional Nmr
pdb|1MXE|A Chain A, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|1MXE|B Chain B, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|4CLN|A Chain A, Structure Of A Recombinant Calmodulin From Drosophila
Melanogaster Refined At 2.2-Angstroms Resolution
Length = 148
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 42
>pdb|4DJC|A Chain A, 1.35 A Crystal Structure Of The Nav1.5 Diii-Iv-CaCAM
COMPLEX
Length = 152
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 15 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 46
>pdb|2VB6|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor
State ( Crystal Form 2)
Length = 149
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 43
>pdb|1PRW|A Chain A, Crystal Structure Of Bovine Brain Ca++ Calmodulin In A
Compact Form
Length = 149
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 43
>pdb|1Y0V|H Chain H, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin And Pyrophosphate
pdb|1Y0V|I Chain I, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin And Pyrophosphate
pdb|1Y0V|J Chain J, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin And Pyrophosphate
pdb|1Y0V|K Chain K, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin And Pyrophosphate
pdb|1Y0V|L Chain L, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin And Pyrophosphate
pdb|1Y0V|M Chain M, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin And Pyrophosphate
Length = 146
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 9 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 40
>pdb|1UP5|A Chain A, Chicken Calmodulin
pdb|1UP5|B Chain B, Chicken Calmodulin
Length = 148
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 42
>pdb|1IQ5|A Chain A, CalmodulinNEMATODE CA2+CALMODULIN DEPENDENT KINASE
KINASE Fragment
pdb|1LVC|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
And 2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
And 2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
And 2' Deoxy, 3' Anthraniloyl Atp
pdb|2BKI|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal
Structure
pdb|2BKI|D Chain D, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal
Structure
pdb|1WRZ|A Chain A, Calmodulin Complexed With A Peptide From A Human
Death-Associated Protein Kinase
pdb|2V01|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Pb
pdb|2V02|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Ba
pdb|2R28|A Chain A, The Complex Structure Of Calmodulin Bound To A
Calcineurin Peptide
pdb|2R28|B Chain B, The Complex Structure Of Calmodulin Bound To A
Calcineurin Peptide
pdb|2W73|A Chain A, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|B Chain B, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|E Chain E, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|F Chain F, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|3HR4|B Chain B, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|D Chain D, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|F Chain F, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|H Chain H, Human Inos Reductase And Calmodulin Complex
pdb|3OXQ|A Chain A, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|B Chain B, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|C Chain C, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|D Chain D, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|2Y4V|A Chain A, Crystal Structure Of Human Calmodulin In Complex With A
Dap Kinase-1 Mutant (W305y) Peptide
pdb|3SJQ|A Chain A, Crystal Structure Of A Small Conductance Potassium
Channel Splice Variant Complexed With
Calcium-Calmodulin
pdb|3SJQ|B Chain B, Crystal Structure Of A Small Conductance Potassium
Channel Splice Variant Complexed With
Calcium-Calmodulin
pdb|4DCK|B Chain B, Crystal Structure Of The C-Terminus Of Voltage-Gated
Sodium Channel In Complex With Fgf13 And Cam
pdb|3SUI|A Chain A, Crystal Structure Of Ca2+-Calmodulin In Complex With A
Trpv1 C- Terminal Peptide
pdb|4G27|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel
Splice Variant And Phenylurea
pdb|4G28|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel
Splice Variant And Ebio-1
Length = 149
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 43
>pdb|1CDL|A Chain A, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|B Chain B, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|C Chain C, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|D Chain D, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1PK0|D Chain D, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|E Chain E, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|F Chain F, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|3GP2|A Chain A, Calmodulin Bound To Peptide From Calmodulin Kinase Ii
(Camkii)
Length = 147
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 42
>pdb|2YGG|B Chain B, Complex Of Cambr And Cam
Length = 150
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 43
>pdb|2WEL|D Chain D, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 150
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 13 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 44
>pdb|2BKH|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
pdb|2VAS|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor
State
pdb|3GN4|B Chain B, Myosin Lever Arm
pdb|3GN4|D Chain D, Myosin Lever Arm
pdb|3GN4|F Chain F, Myosin Lever Arm
pdb|3GN4|H Chain H, Myosin Lever Arm
pdb|3L9I|C Chain C, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant
Crystal Structure
pdb|2X51|B Chain B, M6 Delta Insert1
pdb|4ANJ|B Chain B, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
pdb|4DBP|C Chain C, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
pdb|4DBQ|B Chain B, Myosin Vi D179y (md-insert2-cam, Delta-insert1)
Post-rigor State
Length = 149
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 43
>pdb|4AQR|A Chain A, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
pdb|4AQR|B Chain B, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
Length = 149
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 12 EFKEAFSLFDKDGDGCITTKELGTVMRS----LGQN 43
>pdb|1XFU|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef)
Truncation Mutant, Ef-delta 64 In Complex With
Calmodulin
pdb|1XFU|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef)
Truncation Mutant, Ef-delta 64 In Complex With
Calmodulin
pdb|1XFU|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef)
Truncation Mutant, Ef-delta 64 In Complex With
Calmodulin
pdb|1XFU|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef)
Truncation Mutant, Ef-delta 64 In Complex With
Calmodulin
pdb|1XFU|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef)
Truncation Mutant, Ef-delta 64 In Complex With
Calmodulin
pdb|1XFU|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef)
Truncation Mutant, Ef-delta 64 In Complex With
Calmodulin
pdb|1XFV|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin And 3' Deoxy-Atp
pdb|1XFW|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFY|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin
pdb|1XFY|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin
pdb|1XFY|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin
pdb|1XFY|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin
pdb|1XFY|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin
pdb|1XFY|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin
pdb|1XFZ|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) In
Complex With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) In
Complex With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) In
Complex With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) In
Complex With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) In
Complex With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) In
Complex With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 43
>pdb|1AHR|A Chain A, Calmodulin Mutant With A Two Residue Deletion In The
Central Helix
Length = 146
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 42
>pdb|1JC2|A Chain A, Complex Of The C-Domain Of Troponin C With Residues 1-40
Of Troponin I
Length = 76
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 39 SRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDD 88
++G +E+L F ++D N DG I +E+ E++ + + + IE I+D
Sbjct: 4 AKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHV---IEEDIED 50
>pdb|1RFJ|A Chain A, Crystal Structure Of Potato Calmodulin Pcm6
Length = 149
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 12 EFKEAFSLFDKDGDGCITTKELGTVMRS----LGQN 43
>pdb|2RO8|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 1 N-Terminal Domain
Length = 79
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 11 EFKEAFSLFDKDGDGCITTKELGTVMRS----LGQN 42
>pdb|3UCT|A Chain A, Structure Of Mn2+-Bound N-Terminal Domain Of Calmodulin
In The Presence Of Zn2+
pdb|3UCT|B Chain B, Structure Of Mn2+-Bound N-Terminal Domain Of Calmodulin
In The Presence Of Zn2+
pdb|3UCW|A Chain A, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|B Chain B, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|C Chain C, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|D Chain D, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCY|A Chain A, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
In The Presence Of Zn2+
Length = 79
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 42
>pdb|3EWT|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
pdb|3EWV|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
Length = 154
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 17 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 48
>pdb|2F2O|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide:
A New Way Of Making An Old Binding Mode
pdb|2F2O|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide:
A New Way Of Making An Old Binding Mode
pdb|2F2P|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide:
A New Way Of Making An Old Binding Mode
pdb|2F2P|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide:
A New Way Of Making An Old Binding Mode
Length = 179
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 43
>pdb|1CM1|A Chain A, Motions Of Calmodulin-Single-Conformer Refinement
pdb|1CM4|A Chain A, Motions Of Calmodulin-four-conformer Refinement
pdb|1CKK|A Chain A, CalmodulinRAT CA2+CALMODULIN DEPENDENT PROTEIN KINASE
Fragment
pdb|1CFF|A Chain A, Nmr Solution Structure Of A Complex Of Calmodulin With A
Binding Peptide Of The Ca2+-Pump
pdb|1QIV|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd),
1:2 Complex
pdb|1QIW|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1QIW|B Chain B, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1G4Y|R Chain R, 1.60 A Crystal Structure Of The Gating Domain From Small
Conductance Potassium Channel Complexed With
Calcium-Calmodulin
pdb|1K90|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
And 3' Deoxy-Atp
pdb|1K90|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
And 3' Deoxy-Atp
pdb|1K90|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
And 3' Deoxy-Atp
pdb|1IWQ|A Chain A, Crystal Structure Of Marcks Calmodulin Binding Domain
Peptide Complexed With Ca2+CALMODULIN
pdb|1NWD|A Chain A, Solution Structure Of Ca2+CALMODULIN BOUND TO THE C-
Terminal Domain Of Petunia Glutamate Decarboxylase
pdb|1L7Z|A Chain A, Crystal Structure Of Ca2+/calmodulin Complexed With
Myristoylated Cap-23/nap-22 Peptide
pdb|1S26|D Chain D, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|E Chain E, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|F Chain F, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1SK6|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1QX5|D Chain D, Crystal Structure Of Apocalmodulin
pdb|1QX5|I Chain I, Crystal Structure Of Apocalmodulin
pdb|1QX5|B Chain B, Crystal Structure Of Apocalmodulin
pdb|1QX5|J Chain J, Crystal Structure Of Apocalmodulin
pdb|1QX5|K Chain K, Crystal Structure Of Apocalmodulin
pdb|1QX5|T Chain T, Crystal Structure Of Apocalmodulin
pdb|1QX5|R Chain R, Crystal Structure Of Apocalmodulin
pdb|1QX5|Y Chain Y, Crystal Structure Of Apocalmodulin
pdb|1XA5|A Chain A, Structure Of Calmodulin In Complex With Kar-2, A
Bis-Indol Alkaloid
pdb|1SY9|A Chain A, Structure Of Calmodulin Complexed With A Fragment Of The
Olfactory Cng Channel
pdb|2F3Y|A Chain A, CalmodulinIQ DOMAIN COMPLEX
pdb|2F3Z|A Chain A, CalmodulinIQ-Aa Domain Complex
pdb|1X02|A Chain A, Solution Structure Of Stereo Array Isotope Labeled
(Sail) Calmodulin
pdb|2DFS|B Chain B, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|C Chain C, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|D Chain D, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|E Chain E, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|F Chain F, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|G Chain G, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|N Chain N, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|O Chain O, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|P Chain P, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|Q Chain Q, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|R Chain R, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|S Chain S, 3-D Structure Of Myosin-V Inhibited State
pdb|1YR5|A Chain A, 1.7-A Structure Of Calmodulin Bound To A Peptide From
Dap Kinase
pdb|2FOT|A Chain A, Crystal Structure Of The Complex Between Calmodulin And
Alphaii-Spectrin
pdb|2BCX|A Chain A, Crystal Structure Of Calmodulin In Complex With A
Ryanodine Receptor Peptide
pdb|1A29|A Chain A, Calmodulin Complexed With Trifluoperazine (1:2 Complex)
pdb|1CFC|A Chain A, Calcium-Free Calmodulin
pdb|1CFD|A Chain A, Calcium-Free Calmodulin
pdb|1CLL|A Chain A, Calmodulin Structure Refined At 1.7 Angstroms Resolution
pdb|1CTR|A Chain A, Drug Binding By Calmodulin: Crystal Structure Of A
Calmodulin-Trifluoperazine Complex
pdb|1LIN|A Chain A, Calmodulin Complexed With Trifluoperazine (1:4 Complex)
pdb|1MUX|A Chain A, Solution Nmr Structure Of CalmodulinW-7 Complex: The
Basis Of Diversity In Molecular Recognition, 30
Structures
pdb|2HQW|A Chain A, Crystal Structure Of Ca2+CALMODULIN BOUND TO NMDA
RECEPTOR NR1C1 Peptide
pdb|2O5G|A Chain A, Calmodulin-Smooth Muscle Light Chain Kinase Peptide
Complex
pdb|2O60|A Chain A, Calmodulin Bound To Peptide From Neuronal Nitric Oxide
Synthase
pdb|3BXK|A Chain A, Crystal Structure Of The PQ-Type Calcium Channel
(Cav2.1) Iq Domain And Ca2+calmodulin Complex
pdb|3BXK|C Chain C, Crystal Structure Of The PQ-Type Calcium Channel
(Cav2.1) Iq Domain And Ca2+calmodulin Complex
pdb|3BXL|A Chain A, Crystal Structure Of The R-Type Calcium Channel (Cav2.3)
Iq Domain And Ca2+calmodulin Complex
pdb|2K0E|A Chain A, A Coupled Equilibrium Shift Mechanism In Calmodulin-
Mediated Signal Transduction
pdb|2K0F|A Chain A, Calmodulin Complexed With Calmodulin-Binding Peptide
From Smooth Muscle Myosin Light Chain Kinase
pdb|3DVE|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain Complex
pdb|3DVJ|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain (Without
Cloning Artifact, Hm To Tv) Complex
pdb|3DVK|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.3 Iq Domain Complex
pdb|3DVM|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.1 Iq Domain Complex
pdb|2JZI|A Chain A, Structure Of Calmodulin Complexed With The Calmodulin
Binding Domain Of Calcineurin
pdb|3BYA|A Chain A, Structure Of A Calmodulin Complex
pdb|3G43|A Chain A, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|B Chain B, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|C Chain C, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|D Chain D, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|2KNE|A Chain A, Calmodulin Wraps Around Its Binding Domain In The Plasma
Membrane Ca2+ Pump Anchored By A Novel 18-1 Motif
pdb|2KDU|A Chain A, Structural Basis Of The Munc13-1CA2+-Calmodulin
Interaction: A Novel 1-26 Calmodulin Binding Motif With
A Bipartite Binding Mode
pdb|2X0G|B Chain B, X-ray Structure Of A Dap-kinase Calmodulin Complex
pdb|3GOF|A Chain A, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3GOF|B Chain B, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3IF7|A Chain A, Structure Of Calmodulin Complexed With Its First
Endogenous Inhibitor, Sphingosylphosphorylcholine
pdb|2L53|A Chain A, Solution Nmr Structure Of Apo-Calmodulin In Complex With
The Iq Motif Of Human Cardiac Sodium Channel Nav1.5
pdb|2L7L|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
Calmodulin Kinase I
pdb|2LL6|A Chain A, Solution Nmr Structure Of Cam Bound To Inos Cam Binding
Domain Peptide
pdb|2LL7|A Chain A, Solution Nmr Structure Of Cam Bound To The Enos Cam
Binding Domain Peptide
pdb|4EHQ|A Chain A, Crystal Structure Of Calmodulin Binding Domain Of Orai1
In Complex With Ca2+CALMODULIN DISPLAYS A UNIQUE
BINDING MODE
Length = 148
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 42
>pdb|3B32|A Chain A, Crystal Structure Of Calcium-Saturated Calmodulin
N-Terminal Domain Fragment, Residues 1-75
Length = 75
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 42
>pdb|1AK8|A Chain A, Nmr Solution Structure Of Cerium-Loaded Calmodulin
Amino- Terminal Domain (Ce2-Tr1c), 23 Structures
Length = 76
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 43
>pdb|1OOJ|A Chain A, Structural Genomics Of Caenorhabditis Elegans :
Calmodulin
Length = 149
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 43
>pdb|1K93|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
Length = 144
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 7 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 38
>pdb|2LQC|A Chain A, Nmr Solution Structure Of A Ca2+-Calmodulin With A
Binding Motif (Nscate) Peptide From The N-Terminal
Cytoplasmic Domain Of The L-Type Voltage-Cated Calcium
Channel Alpha1c Subunit
Length = 77
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 42
>pdb|2BE6|A Chain A, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|B Chain B, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|C Chain C, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|1ZUZ|A Chain A, Calmodulin In Complex With A Mutant Peptide From Human
Drp-1 Kinase
Length = 150
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 43
>pdb|1DMO|A Chain A, Calmodulin, Nmr, 30 Structures
pdb|3CLN|A Chain A, Structure Of Calmodulin Refined At 2.2 Angstroms
Resolution
Length = 148
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 42
>pdb|1QTX|A Chain A, The 1.65 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 42
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey
Skeletal Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 39 SRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73
++G +E+L+ F ++D N DG I +E+ E++ +
Sbjct: 90 AKGKSEEELEDCFRIFDKNADGFIDIEELGEILRA 124
>pdb|1F70|A Chain A, Refined Solution Structure Of Calmodulin N-Terminal
Domain
pdb|2PQ3|A Chain A, N-Terminal Calmodulin Zn-Trapped Intermediate
pdb|2KUG|A Chain A, Halothane Binds To Druggable Sites In
Calcium-Calmodulin: Solution Structure Of Halothane-Cam
N-Terminal Domain
Length = 76
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 42
>pdb|2IX7|A Chain A, Structure Of Apo-Calmodulin Bound To Unconventional
Myosin V
pdb|2IX7|B Chain B, Structure Of Apo-Calmodulin Bound To Unconventional
Myosin V
Length = 145
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 10 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 41
>pdb|2VAY|A Chain A, Calmodulin Complexed With Cav1.1 Iq Peptide
pdb|2LGF|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
L-Selectin
Length = 146
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 9 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 40
>pdb|1CDM|A Chain A, Modulation Of Calmodulin Plasticity In Molecular
Recognition On The Basis Of X-Ray Structures
Length = 144
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 8 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 39
>pdb|4GOW|D Chain D, Crystal Structure Of Ca2+CAM:KV7.4 (KCNQ4) B HELIX
COMPLEX
Length = 144
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 9 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 40
>pdb|1J7O|A Chain A, Solution Structure Of Calcium-calmodulin N-terminal
Domain
Length = 76
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 42
>pdb|1QS7|A Chain A, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
pdb|1QS7|C Chain C, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 145
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 8 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 39
>pdb|1TNW|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
pdb|1TNX|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
Length = 162
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 39 SRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDD 88
++G +E+L F ++D N DG I +E+ E++ + + + IE I+D
Sbjct: 90 AKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHV---IEEDIED 136
>pdb|3KHE|A Chain A, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
pdb|3KHE|B Chain B, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
Length = 191
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 31 FLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTT 90
F+G S+++ ++L IF D NGDG + +KE+ E + G + +D +
Sbjct: 28 FMG--SKLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTV-SDLDSSQ 84
Query: 91 VKAHVDKIF 99
++A VD I
Sbjct: 85 IEAEVDHIL 93
>pdb|2JNF|A Chain A, Solution Structure Of Fly Troponin C, Isoform F1
Length = 158
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 31 FLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDML 78
FLG V+ +Q++L+ F LYD G+G I+ M E++ + + L
Sbjct: 79 FLG--EEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAELDETL 124
>pdb|1XFX|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin In The Presence Of 10
Millimolar Exogenously Added Calcium Chloride
pdb|1XFX|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin In The Presence Of 10
Millimolar Exogenously Added Calcium Chloride
pdb|1XFX|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin In The Presence Of 10
Millimolar Exogenously Added Calcium Chloride
pdb|1XFX|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin In The Presence Of 10
Millimolar Exogenously Added Calcium Chloride
pdb|1XFX|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin In The Presence Of 10
Millimolar Exogenously Added Calcium Chloride
pdb|1XFX|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In
Complex With Calmodulin In The Presence Of 10
Millimolar Exogenously Added Calcium Chloride
Length = 149
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V S LG+N
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVXRS----LGQN 43
>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium
Indicator Rcamp
Length = 440
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Query: 51 FGLYDLNGDGLITKKEMEEVVTSIYDMLGRN-IEPQIDD 88
F L+D +GDG IT KE+ V+ S LG+N E ++ D
Sbjct: 308 FSLFDKDGDGTITTKELGTVMRS----LGQNPTEAELQD 342
>pdb|1NIW|A Chain A, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|C Chain C, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|E Chain E, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|G Chain G, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1QX7|I Chain I, Crystal Structure Of Apocam Bound To The Gating Domain
Of Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|R Chain R, Crystal Structure Of Apocam Bound To The Gating Domain
Of Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|A Chain A, Crystal Structure Of Apocam Bound To The Gating Domain
Of Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|B Chain B, Crystal Structure Of Apocam Bound To The Gating Domain
Of Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|M Chain M, Crystal Structure Of Apocam Bound To The Gating Domain
Of Small Conductance Ca2+-Activated Potassium Channel
Length = 148
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V S LG+N
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVXRS----LGQN 42
>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
pdb|1NCX|A Chain A, Troponin C
pdb|1NCY|A Chain A, Troponin-C, Complex With Manganese
pdb|1NCZ|A Chain A, Troponin C
pdb|1TOP|A Chain A, Structure Of Chicken Skeletal Muscle Troponin-C At 1.78
Angstroms Resolution
Length = 162
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 39 SRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73
++G +E+L F ++D N DG I +E+ E++ +
Sbjct: 90 AKGKSEEELANCFRIFDKNADGFIDIEELGEILRA 124
>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 159
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 39 SRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73
++G +E+L F ++D N DG I +E+ E++ +
Sbjct: 87 AKGKSEEELANCFRIFDKNADGFIDIEELGEILRA 121
>pdb|3SG5|A Chain A, Crystal Structure Of Dimeric Gcamp3-D380y, Qp(Linker 1),
Lp(Linker 2)
Length = 448
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 311 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 342
>pdb|3SG7|A Chain A, Crystal Structure Of Gcamp3-Kf(Linker 1)
Length = 448
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 311 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 342
>pdb|3O77|A Chain A, The Structure Of Ca2+ Sensor (Case-16)
Length = 415
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 278 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 309
>pdb|3EK8|A Chain A, Calcium-Saturated Gcamp2 T116vG87R MUTANT MONOMER
Length = 449
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 312 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 343
>pdb|3O78|A Chain A, The Structure Of Ca2+ Sensor (Case-12)
pdb|3O78|B Chain B, The Structure Of Ca2+ Sensor (Case-12)
Length = 415
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 278 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 309
>pdb|3EVU|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2, (#1)
pdb|3EVV|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2 (#2)
pdb|3EK4|A Chain A, Calcium-Saturated Gcamp2 Monomer
pdb|3EK7|A Chain A, Calcium-Saturated Gcamp2 Dimer
Length = 449
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 312 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 343
>pdb|3EVR|A Chain A, Crystal Structure Of Calcium Bound Monomeric Gcamp2
Length = 411
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 275 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 306
>pdb|3SG6|A Chain A, Crystal Structure Of Dimeric Gcamp2-Lia(Linker 1)
Length = 450
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 313 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 344
>pdb|3SG4|A Chain A, Crystal Structure Of Gcamp3-D380y, Lp(Linker 2)
Length = 448
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 311 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 342
>pdb|3SG3|A Chain A, Crystal Structure Of Gcamp3-D380y
Length = 449
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 312 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 343
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 31 FLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTT 90
F+G S+++ ++L IF D NGDG + +KE+ E + G + +D +
Sbjct: 302 FMG--SKLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTV-SDLDSSQ 358
Query: 91 VKAHVDKIF 99
++A VD I
Sbjct: 359 IEAEVDHIL 367
>pdb|1AJ4|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1
Structure
Length = 161
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 39 SRGSVQEKLQWIFGLYDLNGDGLITKKEM 67
S+G +E+L +F ++D N DG I +E+
Sbjct: 89 SKGKTEEELSDLFRMFDKNADGYIDLEEL 117
>pdb|3SG2|A Chain A, Crystal Structure Of Gcamp2-T116v,D381y
Length = 449
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 312 EFKEAFSLFDKDGDGTITTKELGTVMRS----LGQN 343
>pdb|1Y6W|A Chain A, Trapped Intermediate Of Calmodulin
Length = 148
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+ + F L+D +GDG IT KE+ V S+
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVXRSL 39
>pdb|3EKH|A Chain A, Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER
Length = 449
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Query: 51 FGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 317 FSLFDKDGDGTITTKELGTVMRS----LGQN 343
>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp)
From Human Epithelial Cells
Length = 148
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F L+D +GDG IT +E+ V+ S LG+N
Sbjct: 11 EFKEAFSLFDKDGDGCITTRELGTVMRS----LGQN 42
>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In
The Two-Calcium State At 2-Angstroms Resolution
Length = 162
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 39 SRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73
++G +E+L F ++D N DG I +E+ E++ +
Sbjct: 90 AKGKSEEELADCFRIFDKNADGFIDIEELGEILRA 124
>pdb|3CTN|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr,
30 Structures
Length = 76
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 39 SRGSVQEKLQWIFGLYDLNGDGLITKKEM 67
S+G +E+L +F ++D N DG I +E+
Sbjct: 4 SKGKTEEELSDLFRMFDKNADGYIDLEEL 32
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer
Bepridil At 2.15 A Resolution
pdb|1J1D|A Chain A, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|D Chain D, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|A Chain A, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|D Chain D, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 161
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 39 SRGSVQEKLQWIFGLYDLNGDGLITKKEM 67
S+G +E+L +F ++D N DG I +E+
Sbjct: 89 SKGKSEEELSDLFRMFDKNADGYIDLEEL 117
>pdb|2K2A|A Chain A, Solution Structure Of The Apo C Terminal Domain Of
Lethoceru C Isoform F1
Length = 70
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 43 VQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDML-GRNIEPQIDD 88
+Q++L+ F LYD G+G I+ M E++ + + L +++ ID+
Sbjct: 1 MQQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDE 47
>pdb|2JT8|A Chain A, Solution Structure Of The F153-To-5-Flurotryptophan Mutant
Of Human Cardiac Troponin C
Length = 161
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 39 SRGSVQEKLQWIFGLYDLNGDGLITKKEM 67
S+G +E+L +F ++D N DG I E+
Sbjct: 89 SKGKSEEELSDLFRMFDKNADGYIDLDEL 117
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 48 QWIFG----LYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQID 87
Q +FG LY + GDG+IT +MEE + + D G + +D
Sbjct: 143 QLLFGPDGFLYIILGDGMITLDDMEE-MDGLSDFTGSVLRLDVD 185
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 48 QWIFG----LYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQID 87
Q +FG LY + GDG+IT +MEE + + D G + +D
Sbjct: 143 QLLFGPDGFLYIILGDGMITLDDMEE-MDGLSDFTGSVLRLDVD 185
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 48 QWIFG----LYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQID 87
Q +FG LY + GDG+IT +MEE + + D G + +D
Sbjct: 143 QLLFGPDGFLYIILGDGMITLDDMEE-MDGLSDFTGSVLRLDVD 185
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 48 QWIFG----LYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQID 87
Q +FG LY + GDG+IT +MEE + + D G + +D
Sbjct: 164 QLLFGPDGFLYIILGDGMITLDDMEE-MDGLSDFTGSVLRLDVD 206
>pdb|2JT3|A Chain A, Solution Structure Of F153w Cardiac Troponin C
Length = 161
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 39 SRGSVQEKLQWIFGLYDLNGDGLITKKEM 67
S+G +E+L +F ++D N DG I E+
Sbjct: 89 SKGKSEEELSDLFRMFDKNADGYIDLDEL 117
>pdb|2J04|B Chain B, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
pdb|2J04|D Chain D, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
Length = 524
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 6/54 (11%)
Query: 32 LGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEE-VVTSIYDMLGRNIEP 84
+G+L +S S ++K++ I+GL N + L+ +++E TS++D +NI+P
Sbjct: 1 MGLLKDLS--SARDKIERIYGL---NKEKLLLLAKVKEGFETSVFDFPFKNIQP 49
>pdb|3OX6|A Chain A, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|B Chain B, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|C Chain C, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|D Chain D, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|E Chain E, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|F Chain F, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
Length = 153
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSI--YDMLGRNIEPQIDDTTVKA 93
+L+ F +D NGDG I+ E+ E + ++ + + R+IE I D +
Sbjct: 89 ELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNG 138
>pdb|3A8R|A Chain A, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
pdb|3A8R|B Chain B, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
Length = 179
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVT 72
+L+ F + D N DG +T +E++E++
Sbjct: 99 RLRTFFDMVDKNADGRLTAEEVKEIIA 125
>pdb|3RPJ|A Chain A, Structure Of A Curlin Genes Transcriptional Regulator
Protein From Proteus Mirabilis Hi4320.
pdb|3RPJ|B Chain B, Structure Of A Curlin Genes Transcriptional Regulator
Protein From Proteus Mirabilis Hi4320
Length = 134
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 29 QDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGR 80
++F G + R Q + GL+D NGD + ++V+ SI++ L R
Sbjct: 54 REFWGWWXELERNGEQLIYYYQVGLFDKNGDWVNQVISKKDVIESIHETLIR 105
>pdb|2JT0|A Chain A, Solution Structure Of F104w Cardiac Troponin C
Length = 161
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 39 SRGSVQEKLQWIFGLYDLNGDGLITKKEM 67
S+G +E+L +F ++D N DG I E+
Sbjct: 89 SKGKSEEELSDLFRMWDKNADGYIDLDEL 117
>pdb|3EKJ|A Chain A, Calcium-Free Gcamp2 (Calcium Binding Deficient Mutant)
Length = 449
Score = 25.0 bits (53), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Query: 51 FGLYDLNGDGLITKKEMEEVVTSIYDMLGRN-IEPQIDD 88
F L+D +GDG IT K++ V+ S LG+N E ++ D
Sbjct: 317 FSLFDKDGDGGITTKQLGTVMRS----LGQNPTEAELQD 351
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,526,299
Number of Sequences: 62578
Number of extensions: 83208
Number of successful extensions: 465
Number of sequences better than 100.0: 138
Number of HSP's better than 100.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 324
Number of HSP's gapped (non-prelim): 155
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)