Query psy384
Match_columns 101
No_of_seqs 187 out of 1009
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 18:45:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0044|consensus 99.8 2.1E-20 4.5E-25 127.1 9.2 99 2-101 45-155 (193)
2 KOG0034|consensus 99.7 7.8E-16 1.7E-20 104.5 9.7 95 2-101 52-155 (187)
3 COG5126 FRQ1 Ca2+-binding prot 99.5 7.7E-14 1.7E-18 92.5 9.3 76 3-82 39-125 (160)
4 KOG0027|consensus 99.2 6.9E-11 1.5E-15 77.4 8.5 86 3-96 27-128 (151)
5 KOG0031|consensus 99.1 1.7E-09 3.8E-14 71.1 9.5 77 3-83 51-135 (171)
6 KOG0038|consensus 99.0 6E-10 1.3E-14 73.0 6.2 80 14-100 70-156 (189)
7 KOG0028|consensus 99.0 2.1E-09 4.6E-14 71.0 8.5 67 23-97 83-150 (172)
8 PF00036 EF-hand_1: EF hand; 98.9 2E-09 4.3E-14 52.3 3.2 29 46-74 1-29 (29)
9 KOG0030|consensus 98.8 3.2E-08 6.9E-13 64.2 8.3 55 24-78 64-121 (152)
10 PTZ00184 calmodulin; Provision 98.8 1.7E-07 3.7E-12 59.7 9.6 71 3-73 30-112 (149)
11 PF13405 EF-hand_6: EF-hand do 98.7 1.7E-08 3.6E-13 49.5 2.8 27 46-72 1-27 (31)
12 PF13833 EF-hand_8: EF-hand do 98.7 8.2E-08 1.8E-12 52.3 5.6 51 23-73 2-53 (54)
13 PTZ00183 centrin; Provisional 98.7 4E-07 8.6E-12 58.8 9.8 51 23-73 67-118 (158)
14 PLN02964 phosphatidylserine de 98.6 1.6E-07 3.5E-12 73.8 7.4 51 23-73 193-243 (644)
15 PF13499 EF-hand_7: EF-hand do 98.6 7.5E-08 1.6E-12 54.3 4.1 47 46-100 1-47 (66)
16 KOG0037|consensus 98.5 1.5E-06 3.3E-11 60.1 8.6 71 3-83 76-158 (221)
17 PF13499 EF-hand_7: EF-hand do 98.5 5.9E-07 1.3E-11 50.6 5.3 49 23-71 14-66 (66)
18 PF13202 EF-hand_5: EF hand; P 98.4 3.9E-07 8.5E-12 42.6 3.0 25 47-71 1-25 (25)
19 cd05025 S-100A1 S-100A1: S-100 98.2 7E-06 1.5E-10 49.4 6.4 49 44-96 8-59 (92)
20 cd05027 S-100B S-100B: S-100B 98.2 7.5E-06 1.6E-10 49.3 6.1 49 45-97 8-59 (88)
21 cd00051 EFh EF-hand, calcium b 98.2 1.2E-05 2.6E-10 43.1 6.2 49 23-71 14-62 (63)
22 cd05031 S-100A10_like S-100A10 98.1 1.2E-05 2.6E-10 48.6 6.2 49 44-96 7-58 (94)
23 cd05022 S-100A13 S-100A13: S-1 98.1 1E-05 2.2E-10 48.9 5.0 29 45-73 8-37 (89)
24 cd05026 S-100Z S-100Z: S-100Z 98.0 1.5E-05 3.2E-10 48.4 5.3 49 45-97 10-61 (93)
25 smart00027 EH Eps15 homology d 98.0 9.9E-05 2.1E-09 44.7 8.9 59 23-83 24-83 (96)
26 KOG0027|consensus 98.0 2.4E-05 5.1E-10 51.1 6.1 51 23-73 22-72 (151)
27 cd00213 S-100 S-100: S-100 dom 98.0 2.9E-05 6.3E-10 46.1 5.9 50 44-96 7-58 (88)
28 PTZ00183 centrin; Provisional 98.0 5E-05 1.1E-09 48.9 7.3 51 23-73 104-154 (158)
29 KOG0036|consensus 97.9 0.0001 2.2E-09 55.4 8.6 65 23-100 65-129 (463)
30 PTZ00184 calmodulin; Provision 97.9 9.2E-05 2E-09 47.0 7.5 52 23-74 25-76 (149)
31 cd00052 EH Eps15 homology doma 97.9 0.00015 3.2E-09 40.3 7.0 51 23-75 13-63 (67)
32 KOG0044|consensus 97.8 0.00018 3.9E-09 49.3 8.4 65 3-74 25-93 (193)
33 cd05022 S-100A13 S-100A13: S-1 97.8 0.00016 3.5E-09 43.7 6.8 56 23-78 23-80 (89)
34 cd00213 S-100 S-100: S-100 dom 97.8 0.00025 5.5E-09 42.1 7.6 54 23-76 24-82 (88)
35 cd05025 S-100A1 S-100A1: S-100 97.8 0.00026 5.5E-09 42.5 7.7 57 23-79 24-86 (92)
36 KOG0031|consensus 97.8 8.6E-05 1.9E-09 49.2 5.4 46 43-96 30-75 (171)
37 cd00252 SPARC_EC SPARC_EC; ext 97.7 0.00021 4.5E-09 45.2 6.9 26 45-70 48-73 (116)
38 KOG0034|consensus 97.7 0.00026 5.7E-09 48.2 6.9 70 4-73 87-175 (187)
39 KOG2643|consensus 97.6 2.5E-05 5.4E-10 59.0 1.9 50 23-74 213-262 (489)
40 smart00054 EFh EF-hand, calciu 97.6 5.1E-05 1.1E-09 34.5 2.4 27 47-73 2-28 (29)
41 cd05031 S-100A10_like S-100A10 97.6 0.00024 5.2E-09 42.9 5.9 52 24-75 25-81 (94)
42 cd05027 S-100B S-100B: S-100B 97.6 0.00068 1.5E-08 40.7 7.5 54 23-76 23-82 (88)
43 COG5126 FRQ1 Ca2+-binding prot 97.6 0.00042 9.2E-09 46.2 6.9 50 23-72 106-155 (160)
44 cd05030 calgranulins Calgranul 97.5 0.00045 9.8E-09 41.4 6.0 55 23-77 24-83 (88)
45 cd05029 S-100A6 S-100A6: S-100 97.5 0.00052 1.1E-08 41.2 5.9 47 46-97 11-59 (88)
46 cd05026 S-100Z S-100Z: S-100Z 97.5 0.00057 1.2E-08 41.3 6.1 55 23-77 25-85 (93)
47 cd05029 S-100A6 S-100A6: S-100 97.5 0.0007 1.5E-08 40.7 6.3 54 24-77 27-83 (88)
48 cd00252 SPARC_EC SPARC_EC; ext 97.5 0.00016 3.5E-09 45.7 3.6 40 24-71 63-106 (116)
49 cd05023 S-100A11 S-100A11: S-1 97.5 0.00058 1.3E-08 41.1 5.8 54 24-77 26-84 (89)
50 smart00027 EH Eps15 homology d 97.4 0.00034 7.3E-09 42.3 3.9 31 43-73 8-38 (96)
51 KOG0030|consensus 97.3 0.00062 1.3E-08 44.4 5.2 38 42-83 8-45 (152)
52 KOG0751|consensus 97.3 0.0014 3.1E-08 50.6 7.8 72 1-74 53-137 (694)
53 cd00052 EH Eps15 homology doma 97.3 0.00028 6E-09 39.2 3.0 26 48-73 2-27 (67)
54 PRK12309 transaldolase/EF-hand 97.3 0.001 2.2E-08 50.0 6.8 26 49-74 361-386 (391)
55 cd00051 EFh EF-hand, calcium b 97.2 0.001 2.2E-08 35.3 4.7 28 47-74 2-29 (63)
56 KOG2562|consensus 97.1 0.0016 3.4E-08 49.7 6.2 56 23-78 329-384 (493)
57 PF14788 EF-hand_10: EF hand; 97.1 0.0035 7.6E-08 34.1 5.8 49 26-74 2-50 (51)
58 PF14658 EF-hand_9: EF-hand do 96.9 0.0022 4.8E-08 36.7 4.3 41 49-97 2-43 (66)
59 KOG4666|consensus 96.9 0.0016 3.5E-08 48.0 4.4 51 23-73 273-324 (412)
60 cd05023 S-100A11 S-100A11: S-1 96.9 0.0034 7.4E-08 37.7 5.1 30 45-74 9-40 (89)
61 PRK12309 transaldolase/EF-hand 96.8 0.0063 1.4E-07 45.8 6.8 58 42-100 331-388 (391)
62 KOG0028|consensus 96.5 0.042 9.2E-07 36.7 8.5 52 23-74 47-98 (172)
63 PF12763 EF-hand_4: Cytoskelet 96.5 0.027 5.8E-07 34.9 7.0 67 4-78 10-76 (104)
64 PF14658 EF-hand_9: EF-hand do 96.5 0.016 3.5E-07 33.1 5.5 51 23-73 12-64 (66)
65 cd05024 S-100A10 S-100A10: A s 96.3 0.021 4.5E-07 34.7 5.7 55 24-78 22-81 (91)
66 KOG0037|consensus 96.2 0.055 1.2E-06 37.7 8.0 73 4-77 114-192 (221)
67 KOG0041|consensus 96.1 0.016 3.5E-07 40.2 5.0 30 45-74 99-128 (244)
68 KOG2643|consensus 95.8 0.012 2.5E-07 45.0 3.7 51 24-74 403-454 (489)
69 PLN02964 phosphatidylserine de 95.8 0.073 1.6E-06 42.6 8.3 28 47-74 181-208 (644)
70 KOG4065|consensus 95.8 0.06 1.3E-06 34.3 6.3 57 44-100 65-124 (144)
71 KOG4223|consensus 95.7 0.0094 2E-07 43.7 2.6 49 23-71 214-267 (325)
72 PF00036 EF-hand_1: EF hand; 95.7 0.022 4.9E-07 27.1 3.2 28 5-37 1-28 (29)
73 KOG4347|consensus 95.6 0.016 3.4E-07 46.0 3.8 49 18-67 558-612 (671)
74 cd05030 calgranulins Calgranul 95.6 0.051 1.1E-06 32.4 5.2 29 45-73 8-38 (88)
75 KOG0377|consensus 94.3 0.15 3.2E-06 39.4 5.7 47 46-96 548-594 (631)
76 PF08726 EFhand_Ca_insen: Ca2+ 94.2 0.039 8.5E-07 31.8 2.0 29 43-72 4-32 (69)
77 KOG0040|consensus 93.9 0.11 2.3E-06 45.4 4.6 61 5-71 2297-2359(2399)
78 KOG0377|consensus 93.9 0.27 5.8E-06 38.1 6.3 51 23-73 561-615 (631)
79 PF13833 EF-hand_8: EF-hand do 92.0 0.49 1.1E-05 25.0 4.2 31 58-96 1-32 (54)
80 KOG0751|consensus 92.0 0.29 6.2E-06 38.4 4.3 47 24-74 162-208 (694)
81 KOG0039|consensus 92.0 0.39 8.6E-06 38.5 5.3 66 24-100 3-68 (646)
82 PF12631 GTPase_Cys_C: Catalyt 91.3 0.76 1.6E-05 26.4 4.7 49 45-101 23-71 (73)
83 KOG4223|consensus 89.9 0.92 2E-05 33.5 5.1 45 29-73 61-105 (325)
84 KOG0041|consensus 89.8 2.5 5.5E-05 29.6 6.9 52 23-74 113-164 (244)
85 KOG2871|consensus 89.7 0.15 3.3E-06 38.4 1.0 34 42-75 306-339 (449)
86 PF09069 EF-hand_3: EF-hand; 88.7 1.4 3E-05 26.6 4.5 52 44-100 2-56 (90)
87 PF10591 SPARC_Ca_bdg: Secrete 88.6 0.21 4.5E-06 31.3 0.9 31 42-72 51-81 (113)
88 PF10591 SPARC_Ca_bdg: Secrete 87.7 0.53 1.2E-05 29.4 2.4 45 23-69 68-112 (113)
89 PF12174 RST: RCD1-SRO-TAF4 (R 87.6 3.8 8.2E-05 23.6 5.9 50 24-79 7-56 (70)
90 KOG0036|consensus 86.8 2.9 6.2E-05 32.1 6.1 50 23-72 96-145 (463)
91 PF09068 EF-hand_2: EF hand; 85.6 0.95 2.1E-05 28.9 2.7 49 25-73 59-125 (127)
92 KOG0040|consensus 85.6 1.5 3.1E-05 38.9 4.4 38 41-82 2246-2286(2399)
93 cd05024 S-100A10 S-100A10: A s 85.5 3.3 7.1E-05 25.1 4.9 28 45-73 8-35 (91)
94 PF00404 Dockerin_1: Dockerin 85.3 1.6 3.4E-05 19.3 2.6 17 55-71 1-17 (21)
95 PLN02952 phosphoinositide phos 84.7 4.7 0.0001 32.3 6.6 51 23-74 14-66 (599)
96 KOG0038|consensus 82.8 12 0.00025 25.1 7.4 50 24-73 123-177 (189)
97 cd08324 CARD_NOD1_CARD4 Caspas 82.8 8 0.00017 23.1 6.6 70 3-77 7-76 (85)
98 KOG4347|consensus 80.4 3.5 7.6E-05 33.2 4.5 50 25-74 534-584 (671)
99 KOG4065|consensus 79.3 9.9 0.00021 24.4 5.4 46 23-68 81-140 (144)
100 PF09279 EF-hand_like: Phospho 78.7 10 0.00022 21.7 5.8 45 46-97 1-45 (83)
101 PF07879 PHB_acc_N: PHB/PHA ac 78.4 1.8 4E-05 24.5 1.8 22 52-73 10-31 (64)
102 KOG4251|consensus 77.4 3.4 7.4E-05 29.9 3.3 27 45-71 101-127 (362)
103 KOG0035|consensus 75.8 7.1 0.00015 32.7 5.1 46 23-69 802-848 (890)
104 KOG0046|consensus 75.3 5.2 0.00011 31.7 4.0 27 47-74 21-47 (627)
105 KOG4578|consensus 71.8 4.9 0.00011 30.2 3.0 51 23-73 347-398 (421)
106 KOG2562|consensus 71.4 4.1 9E-05 31.6 2.7 21 51-71 284-304 (493)
107 KOG0046|consensus 69.3 33 0.00073 27.4 7.1 53 23-75 32-87 (627)
108 PF05042 Caleosin: Caleosin re 68.5 10 0.00022 25.7 3.8 30 44-73 95-124 (174)
109 KOG3866|consensus 67.8 11 0.00023 28.3 4.1 29 50-78 249-277 (442)
110 KOG1707|consensus 65.1 8.2 0.00018 31.0 3.2 30 45-74 315-344 (625)
111 TIGR01848 PHA_reg_PhaR polyhyd 63.2 6 0.00013 24.7 1.8 22 52-73 10-31 (107)
112 KOG3555|consensus 62.9 6.7 0.00015 29.6 2.3 27 44-70 249-275 (434)
113 PF08672 APC2: Anaphase promot 62.8 24 0.00053 19.5 4.4 34 41-75 11-46 (60)
114 KOG4251|consensus 57.3 24 0.00053 25.6 4.2 48 25-72 252-308 (362)
115 PF05042 Caleosin: Caleosin re 57.0 7.8 0.00017 26.3 1.6 28 47-74 9-36 (174)
116 KOG2557|consensus 56.9 32 0.00069 26.3 4.9 52 25-76 74-125 (427)
117 PF01023 S_100: S-100/ICaBP ty 55.6 28 0.00061 17.9 3.5 28 46-73 7-36 (44)
118 PF06226 DUF1007: Protein of u 55.5 13 0.00027 25.7 2.6 27 52-78 57-83 (212)
119 PF11829 DUF3349: Protein of u 55.1 47 0.001 20.3 5.1 67 25-98 19-85 (96)
120 TIGR00450 mnmE_trmE_thdF tRNA 54.5 35 0.00075 26.2 5.0 33 61-101 405-437 (442)
121 PF10897 DUF2713: Protein of u 53.0 27 0.0006 24.4 3.8 57 22-80 174-242 (246)
122 KOG1707|consensus 51.7 32 0.00069 27.8 4.4 30 45-74 195-224 (625)
123 KOG2243|consensus 51.7 11 0.00023 34.0 2.0 24 50-73 4062-4085(5019)
124 PF09373 PMBR: Pseudomurein-bi 47.8 25 0.00053 16.9 2.2 20 59-78 2-21 (33)
125 KOG3442|consensus 47.2 42 0.00091 21.6 3.7 33 59-100 53-85 (132)
126 PF10440 WIYLD: Ubiquitin-bind 46.9 36 0.00077 19.3 3.1 38 62-100 23-60 (65)
127 PRK12606 GTP cyclohydrolase I; 46.9 63 0.0014 22.4 4.9 39 57-95 12-50 (201)
128 PLN02223 phosphoinositide phos 46.7 74 0.0016 25.4 5.7 55 42-100 13-67 (537)
129 PF14164 YqzH: YqzH-like prote 45.6 56 0.0012 18.5 5.7 38 45-82 8-46 (64)
130 KOG4004|consensus 44.3 16 0.00034 25.7 1.6 28 43-70 220-247 (259)
131 KOG1955|consensus 42.4 27 0.00059 27.9 2.7 32 43-74 263-294 (737)
132 PF04282 DUF438: Family of unk 42.1 32 0.00068 19.9 2.4 10 62-71 46-55 (71)
133 PF14297 DUF4373: Domain of un 41.9 70 0.0015 18.6 5.3 42 25-67 43-86 (87)
134 COG0486 ThdF Predicted GTPase 40.2 77 0.0017 24.8 4.9 49 45-101 401-449 (454)
135 PF07500 TFIIS_M: Transcriptio 38.3 30 0.00064 21.3 2.1 34 2-36 52-90 (115)
136 PF03986 Autophagy_N: Autophag 38.0 22 0.00048 23.3 1.5 34 1-34 1-36 (145)
137 TIGR01592 holin_SPP1 holin, SP 37.8 85 0.0018 18.3 4.1 29 70-99 16-44 (75)
138 PF09967 DUF2201: VWA-like dom 37.2 40 0.00088 21.2 2.6 24 56-79 5-28 (126)
139 cd08330 CARD_ASC_NALP1 Caspase 37.0 87 0.0019 18.2 6.2 65 4-73 8-72 (82)
140 PF14069 SpoVIF: Stage VI spor 36.8 90 0.002 18.3 4.5 32 63-98 29-60 (79)
141 cd06404 PB1_aPKC PB1 domain is 36.7 29 0.00062 20.7 1.7 39 24-62 18-76 (83)
142 PRK05291 trmE tRNA modificatio 36.3 92 0.002 23.9 4.8 33 61-101 412-444 (449)
143 PF09061 Stirrup: Stirrup; In 35.5 89 0.0019 17.9 3.9 21 59-79 47-67 (79)
144 PF08976 DUF1880: Domain of un 34.0 29 0.00064 22.0 1.5 30 2-36 5-34 (118)
145 KOG1029|consensus 33.3 41 0.00088 28.4 2.5 40 42-81 226-266 (1118)
146 PF14000 Packaging_FI: DNA pac 32.7 1.3E+02 0.0028 19.3 4.3 34 63-96 1-34 (125)
147 PRK13696 hypothetical protein; 32.6 67 0.0014 18.1 2.7 30 24-54 21-50 (62)
148 PF14842 FliG_N: FliG N-termin 32.5 81 0.0018 19.2 3.3 17 60-76 46-62 (108)
149 PF11116 DUF2624: Protein of u 32.3 1.2E+02 0.0025 18.2 5.5 56 24-79 13-68 (85)
150 PF07868 DUF1655: Protein of u 32.3 78 0.0017 17.0 2.7 34 61-100 1-34 (55)
151 PF14129 DUF4296: Domain of un 30.5 79 0.0017 18.4 2.9 20 59-78 2-21 (87)
152 PF10668 Phage_terminase: Phag 29.6 56 0.0012 18.2 2.0 23 48-71 10-32 (60)
153 PF12283 Protein_K: Bacterioph 29.2 1E+02 0.0022 16.6 2.9 37 50-86 13-50 (56)
154 PRK09279 pyruvate phosphate di 28.9 3.7E+02 0.008 23.0 7.9 73 27-100 137-217 (879)
155 PF00427 PBS_linker_poly: Phyc 28.1 56 0.0012 21.1 2.1 53 19-73 38-98 (131)
156 smart00845 GatB_Yqey GatB doma 27.0 1.8E+02 0.0038 18.6 4.9 12 89-100 91-102 (147)
157 TIGR03573 WbuX N-acetyl sugar 27.0 1.4E+02 0.0031 22.0 4.4 19 19-37 296-314 (343)
158 PF14513 DAG_kinase_N: Diacylg 27.0 1.8E+02 0.004 18.8 4.9 54 6-59 27-83 (138)
159 PF10256 Erf4: Golgin subfamil 26.5 80 0.0017 19.3 2.6 24 58-81 26-49 (118)
160 KOG1265|consensus 26.4 3.5E+02 0.0076 23.6 6.7 70 25-97 204-275 (1189)
161 PF14162 YozD: YozD-like prote 26.2 1.2E+02 0.0026 16.5 4.1 12 88-99 30-41 (57)
162 KOG3449|consensus 26.1 1.8E+02 0.0038 18.3 5.0 26 48-73 4-29 (112)
163 PF07574 SMC_Nse1: Nse1 non-SM 25.9 1.2E+02 0.0026 20.5 3.6 20 60-79 14-33 (200)
164 PF02637 GatB_Yqey: GatB domai 25.9 1.1E+02 0.0025 19.4 3.3 54 43-100 41-103 (148)
165 PF11363 DUF3164: Protein of u 25.8 1.7E+02 0.0038 20.0 4.3 32 41-72 115-146 (195)
166 PF15017 AF1Q: Drug resistance 25.2 40 0.00087 20.3 1.0 17 54-70 68-84 (87)
167 smart00510 TFS2M Domain in the 25.0 79 0.0017 19.2 2.3 33 2-34 50-86 (102)
168 COG5562 Phage envelope protein 25.0 56 0.0012 21.3 1.7 15 23-37 86-100 (137)
169 PF09851 SHOCT: Short C-termin 24.9 91 0.002 14.6 3.1 15 59-73 14-28 (31)
170 PF08833 Axin_b-cat_bind: Axin 24.9 62 0.0013 17.0 1.5 13 88-100 5-17 (45)
171 PF09336 Vps4_C: Vps4 C termin 24.1 1.2E+02 0.0027 16.6 2.8 24 25-48 29-52 (62)
172 PF01893 UPF0058: Uncharacteri 23.7 92 0.002 18.8 2.3 53 1-53 1-57 (89)
173 PF04056 Ssl1: Ssl1-like; Int 23.7 1.2E+02 0.0026 20.8 3.2 68 2-73 24-91 (193)
174 COG1512 Beta-propeller domains 23.5 1.1E+02 0.0024 22.2 3.1 46 56-101 37-89 (271)
175 PRK09347 folE GTP cyclohydrola 23.3 2.1E+02 0.0046 19.5 4.4 18 65-82 6-23 (188)
176 PF09204 Colicin_immun: Bacter 23.3 76 0.0017 19.0 1.9 66 23-100 14-85 (88)
177 PF02761 Cbl_N2: CBL proto-onc 23.2 1.8E+02 0.0039 17.4 5.1 48 25-72 22-69 (85)
178 KOG0169|consensus 22.9 4.6E+02 0.01 22.0 8.7 48 23-74 186-233 (746)
179 PF03395 Pox_P4A: Poxvirus P4A 22.6 3.8E+02 0.0082 23.0 6.2 56 28-83 469-530 (888)
180 PF04558 tRNA_synt_1c_R1: Glut 22.5 1.4E+02 0.0031 19.8 3.3 49 43-100 83-131 (164)
181 PF09873 DUF2100: Uncharacteri 22.3 2.5E+02 0.0054 19.7 4.5 44 56-99 36-83 (215)
182 KOG3555|consensus 22.2 67 0.0014 24.5 1.8 45 24-72 265-309 (434)
183 PHA00097 K protein K 22.1 1.5E+02 0.0032 16.0 2.9 36 50-85 13-49 (56)
184 PHA02142 putative RNA ligase 21.5 42 0.0009 25.4 0.7 26 49-74 273-298 (366)
185 PF12069 DUF3549: Protein of u 21.4 1.1E+02 0.0023 23.1 2.7 44 53-96 74-117 (340)
186 PF09743 DUF2042: Uncharacteri 21.1 2.2E+02 0.0048 20.5 4.3 46 53-99 42-95 (272)
187 TIGR00134 gatE_arch glutamyl-t 20.9 3.1E+02 0.0067 22.4 5.4 53 44-100 515-575 (620)
188 PF13642 DUF4144: protein stru 20.9 2.1E+02 0.0046 17.5 3.6 39 59-97 61-99 (101)
189 cd00642 GTP_cyclohydro1 GTP cy 20.8 2.5E+02 0.0055 19.1 4.3 14 68-81 7-20 (185)
190 PRK04028 glutamyl-tRNA(Gln) am 20.6 3E+02 0.0066 22.5 5.3 53 45-100 522-582 (630)
191 PTZ00373 60S Acidic ribosomal 20.1 2.4E+02 0.0052 17.7 5.1 26 48-73 6-31 (112)
192 PF01885 PTS_2-RNA: RNA 2'-pho 20.1 1.9E+02 0.0042 19.5 3.6 35 55-97 26-60 (186)
No 1
>KOG0044|consensus
Probab=99.84 E-value=2.1e-20 Score=127.11 Aligned_cols=99 Identities=38% Similarity=0.617 Sum_probs=88.6
Q ss_pred chHHHHHHHHHhcchh------hhhHh------cccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHH
Q psy384 2 YDDKLKQFLFLMLPLY------NYLLY------LVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEE 69 (101)
Q Consensus 2 ~~e~~~~~~~~~~p~~------~~l~~------~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~ 69 (101)
-.++|+++|..++|.+ .++++ +|.|+|.||+++++..++|+.+++++|+|++||.||+|+|+++|+..
T Consensus 45 ~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~ 124 (193)
T KOG0044|consen 45 TLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLK 124 (193)
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHH
Confidence 4578999999999966 34444 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCCCCChhhHHHHHHhhccC
Q psy384 70 VVTSIYDMLGRNIEPQIDDTTVKAHVDKIFSE 101 (101)
Q Consensus 70 ~l~~l~~~~g~~~~~~~~~~~~~~~vd~if~~ 101 (101)
++.+++.++|....+ ..+.+++++|+++|++
T Consensus 125 iv~~i~~m~~~~~~~-~~~~~~~~~v~~if~k 155 (193)
T KOG0044|consen 125 IVQAIYQMTGSKALP-EDEETPEERVDKIFSK 155 (193)
T ss_pred HHHHHHHHcccccCC-cccccHHHHHHHHHHH
Confidence 999999999985554 6678999999999974
No 2
>KOG0034|consensus
Probab=99.66 E-value=7.8e-16 Score=104.45 Aligned_cols=95 Identities=29% Similarity=0.518 Sum_probs=79.2
Q ss_pred chHHHHHHH-HHhcchhhhhHh------ccc-ccHHHHHHHHHhhcCC-CHHHHHHHHhhhhccCCCccccHHHHHHHHH
Q psy384 2 YDDKLKQFL-FLMLPLYNYLLY------LVI-SCMQDFLGILSRVSRG-SVQEKLQWIFGLYDLNGDGLITKKEMEEVVT 72 (101)
Q Consensus 2 ~~e~~~~~~-~~~~p~~~~l~~------~g~-I~f~eFl~~l~~~~~~-~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~ 72 (101)
-++||..+. ...||+..||++ +|. |+|++|+..++.+.+. ..++|+++||++||.+++|+|+.+|+.+++.
T Consensus 52 t~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~ 131 (187)
T KOG0034|consen 52 TKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILR 131 (187)
T ss_pred CHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHH
Confidence 467888885 335999999997 355 9999999999999864 5556999999999999999999999999999
Q ss_pred HHHHhhCCCCCCCCChhhHHHHHHhhccC
Q psy384 73 SIYDMLGRNIEPQIDDTTVKAHVDKIFSE 101 (101)
Q Consensus 73 ~l~~~~g~~~~~~~~~~~~~~~vd~if~~ 101 (101)
. +.|.+... +++++++++|++|.+
T Consensus 132 ~---~~~~~~~~--~~e~~~~i~d~t~~e 155 (187)
T KOG0034|consen 132 M---MVGENDDM--SDEQLEDIVDKTFEE 155 (187)
T ss_pred H---HHccCCcc--hHHHHHHHHHHHHHH
Confidence 8 45554432 689999999999863
No 3
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.54 E-value=7.7e-14 Score=92.47 Aligned_cols=76 Identities=30% Similarity=0.432 Sum_probs=60.8
Q ss_pred hHHHHHHHHHh--cchh---hhhHh--c---ccccHHHHHHHHHhhc-CCCHHHHHHHHhhhhccCCCccccHHHHHHHH
Q psy384 3 DDKLKQFLFLM--LPLY---NYLLY--L---VISCMQDFLGILSRVS-RGSVQEKLQWIFGLYDLNGDGLITKKEMEEVV 71 (101)
Q Consensus 3 ~e~~~~~~~~~--~p~~---~~l~~--~---g~I~f~eFl~~l~~~~-~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l 71 (101)
+.+|..+++.+ +|.. .+++. . +.|+|.+|+.+|+... ++++++++++||++||.|++|+|+..||+.++
T Consensus 39 ~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl 118 (160)
T COG5126 39 RNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVL 118 (160)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHH
Confidence 46777777755 2222 45554 2 7999999999999887 67889999999999999999999999999999
Q ss_pred HHHHHhhCCCC
Q psy384 72 TSIYDMLGRNI 82 (101)
Q Consensus 72 ~~l~~~~g~~~ 82 (101)
++ +|.+.
T Consensus 119 ~~----lge~~ 125 (160)
T COG5126 119 KS----LGERL 125 (160)
T ss_pred Hh----hcccC
Confidence 95 66543
No 4
>KOG0027|consensus
Probab=99.24 E-value=6.9e-11 Score=77.37 Aligned_cols=86 Identities=24% Similarity=0.401 Sum_probs=61.9
Q ss_pred hHHHHHHHHHhcch--hh---hhHh------cccccHHHHHHHHHhhcC-CC----HHHHHHHHhhhhccCCCccccHHH
Q psy384 3 DDKLKQFLFLMLPL--YN---YLLY------LVISCMQDFLGILSRVSR-GS----VQEKLQWIFGLYDLNGDGLITKKE 66 (101)
Q Consensus 3 ~e~~~~~~~~~~p~--~~---~l~~------~g~I~f~eFl~~l~~~~~-~~----~~e~l~~aF~~fD~d~~G~Is~~e 66 (101)
.++|..+++.+.+. .. .++. +|.|+|.+|+.++..... .. ..+.++.||++||.||+|+||.+|
T Consensus 27 ~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~e 106 (151)
T KOG0027|consen 27 VEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASE 106 (151)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHH
Confidence 45677777776432 22 2222 489999999999987653 22 356999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCCCChhhHHHHHH
Q psy384 67 MEEVVTSIYDMLGRNIEPQIDDTTVKAHVD 96 (101)
Q Consensus 67 l~~~l~~l~~~~g~~~~~~~~~~~~~~~vd 96 (101)
|+.+|.. +|.+.+ .+.+++++.
T Consensus 107 l~~~l~~----lg~~~~----~~e~~~mi~ 128 (151)
T KOG0027|consen 107 LKKVLTS----LGEKLT----DEECKEMIR 128 (151)
T ss_pred HHHHHHH----hCCcCC----HHHHHHHHH
Confidence 9999996 565543 455555543
No 5
>KOG0031|consensus
Probab=99.08 E-value=1.7e-09 Score=71.10 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=62.3
Q ss_pred hHHHHHHHHHhcchh--hhhHh-----cccccHHHHHHHHHhhc-CCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHH
Q psy384 3 DDKLKQFLFLMLPLY--NYLLY-----LVISCMQDFLGILSRVS-RGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74 (101)
Q Consensus 3 ~e~~~~~~~~~~p~~--~~l~~-----~g~I~f~eFl~~l~~~~-~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l 74 (101)
+++++..|..++... ++|.. .|.|+|.-||.++...+ ..++++.+..||+.||.+++|.|..+.|+.+|++
T Consensus 51 keDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt- 129 (171)
T KOG0031|consen 51 KEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTT- 129 (171)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHH-
Confidence 678888888886544 33332 48999999999998665 5678999999999999999999999999999986
Q ss_pred HHhhCCCCC
Q psy384 75 YDMLGRNIE 83 (101)
Q Consensus 75 ~~~~g~~~~ 83 (101)
.|.+.+
T Consensus 130 ---~gDr~~ 135 (171)
T KOG0031|consen 130 ---MGDRFT 135 (171)
T ss_pred ---hcccCC
Confidence 565443
No 6
>KOG0038|consensus
Probab=99.05 E-value=6e-10 Score=72.98 Aligned_cols=80 Identities=24% Similarity=0.421 Sum_probs=65.1
Q ss_pred cchhhhhHh------cccccHHHHHHHHHhhcC-CCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHhhCCCCCCCC
Q psy384 14 LPLYNYLLY------LVISCMQDFLGILSRVSR-GSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQI 86 (101)
Q Consensus 14 ~p~~~~l~~------~g~I~f~eFl~~l~~~~~-~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g~~~~~~~ 86 (101)
||+.+||.. .|.++|++|+.++++++. ...+-++..||++||.|+|++|..++|...++++-+ . .+
T Consensus 70 npfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr---~----eL 142 (189)
T KOG0038|consen 70 NPFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTR---D----EL 142 (189)
T ss_pred ChHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhh---c----cC
Confidence 677777776 389999999999999986 455568899999999999999999999999998632 2 24
Q ss_pred ChhhHHHHHHhhcc
Q psy384 87 DDTTVKAHVDKIFS 100 (101)
Q Consensus 87 ~~~~~~~~vd~if~ 100 (101)
++++.+.+++++..
T Consensus 143 s~eEv~~i~ekvie 156 (189)
T KOG0038|consen 143 SDEEVELICEKVIE 156 (189)
T ss_pred CHHHHHHHHHHHHH
Confidence 57778888887754
No 7
>KOG0028|consensus
Probab=99.04 E-value=2.1e-09 Score=71.02 Aligned_cols=67 Identities=19% Similarity=0.390 Sum_probs=57.1
Q ss_pred cccccHHHHHHHHHhhc-CCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHh
Q psy384 23 LVISCMQDFLGILSRVS-RGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDK 97 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~-~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd~ 97 (101)
+|.|+|++|...|+... ..++.+.+..||+++|.|++|.||..+|+.+++. +|.+++ ++++.++|+.
T Consensus 83 ~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvake----Lgenlt----D~El~eMIeE 150 (172)
T KOG0028|consen 83 SGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKE----LGENLT----DEELMEMIEE 150 (172)
T ss_pred CceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHH----hCcccc----HHHHHHHHHH
Confidence 48999999999988655 5668899999999999999999999999999986 666544 7888877764
No 8
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.89 E-value=2e-09 Score=52.29 Aligned_cols=29 Identities=31% Similarity=0.559 Sum_probs=26.4
Q ss_pred HHHHHhhhhccCCCccccHHHHHHHHHHH
Q psy384 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSI 74 (101)
Q Consensus 46 ~l~~aF~~fD~d~~G~Is~~el~~~l~~l 74 (101)
+++++|+.||+|+||+|+.+|+..+|+++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 47889999999999999999999999863
No 9
>KOG0030|consensus
Probab=98.84 E-value=3.2e-08 Score=64.21 Aligned_cols=55 Identities=22% Similarity=0.358 Sum_probs=45.8
Q ss_pred ccccHHHHHHHHHhhcC---CCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHhh
Q psy384 24 VISCMQDFLGILSRVSR---GSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDML 78 (101)
Q Consensus 24 g~I~f~eFl~~l~~~~~---~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~ 78 (101)
..|+|++|+.++..+.+ +...+..-...++||++|+|+|...||+++|+++++.+
T Consensus 64 ~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl 121 (152)
T KOG0030|consen 64 KRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKL 121 (152)
T ss_pred hhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhc
Confidence 57999999999987763 34556677799999999999999999999999855433
No 10
>PTZ00184 calmodulin; Provisional
Probab=98.75 E-value=1.7e-07 Score=59.72 Aligned_cols=71 Identities=18% Similarity=0.334 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhcc--hh---hhhHh------cccccHHHHHHHHHhhcC-CCHHHHHHHHhhhhccCCCccccHHHHHHH
Q psy384 3 DDKLKQFLFLMLP--LY---NYLLY------LVISCMQDFLGILSRVSR-GSVQEKLQWIFGLYDLNGDGLITKKEMEEV 70 (101)
Q Consensus 3 ~e~~~~~~~~~~p--~~---~~l~~------~g~I~f~eFl~~l~~~~~-~~~~e~l~~aF~~fD~d~~G~Is~~el~~~ 70 (101)
.++|..++..++. .. .++++ +|.|+|++|+.++..... ....+.+..+|+.||.+++|+|+.+|++.+
T Consensus 30 ~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~ 109 (149)
T PTZ00184 30 TKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHV 109 (149)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHH
Confidence 4566666655432 11 23332 489999999999886653 456678999999999999999999999999
Q ss_pred HHH
Q psy384 71 VTS 73 (101)
Q Consensus 71 l~~ 73 (101)
+..
T Consensus 110 l~~ 112 (149)
T PTZ00184 110 MTN 112 (149)
T ss_pred HHH
Confidence 875
No 11
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.69 E-value=1.7e-08 Score=49.48 Aligned_cols=27 Identities=30% Similarity=0.679 Sum_probs=24.6
Q ss_pred HHHHHhhhhccCCCccccHHHHHHHHH
Q psy384 46 KLQWIFGLYDLNGDGLITKKEMEEVVT 72 (101)
Q Consensus 46 ~l~~aF~~fD~d~~G~Is~~el~~~l~ 72 (101)
+++.+|+.||.|++|+|+.+|++.+++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 478899999999999999999999998
No 12
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.68 E-value=8.2e-08 Score=52.32 Aligned_cols=51 Identities=22% Similarity=0.322 Sum_probs=43.5
Q ss_pred cccccHHHHHHHHHhhcCC-CHHHHHHHHhhhhccCCCccccHHHHHHHHHH
Q psy384 23 LVISCMQDFLGILSRVSRG-SVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~~-~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~ 73 (101)
+|.|+.++|..++..+... -+++.+..+|..+|.|++|+|+.+|+..++..
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 4899999999999655433 55666999999999999999999999998864
No 13
>PTZ00183 centrin; Provisional
Probab=98.68 E-value=4e-07 Score=58.81 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=44.0
Q ss_pred cccccHHHHHHHHHhhc-CCCHHHHHHHHhhhhccCCCccccHHHHHHHHHH
Q psy384 23 LVISCMQDFLGILSRVS-RGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~-~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~ 73 (101)
.|.|+|++|+.++.... .....+.++.+|+.||.+++|+|+.+|+..++..
T Consensus 67 ~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 67 SGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred CCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 47999999999887654 3456678999999999999999999999999875
No 14
>PLN02964 phosphatidylserine decarboxylase
Probab=98.61 E-value=1.6e-07 Score=73.82 Aligned_cols=51 Identities=22% Similarity=0.316 Sum_probs=46.6
Q ss_pred cccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHH
Q psy384 23 LVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~ 73 (101)
+|.|+|+||+.++..+....+++++++||+.||.|++|+|+.+||..+|..
T Consensus 193 dG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 193 DGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 489999999999987655677889999999999999999999999999987
No 15
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.60 E-value=7.5e-08 Score=54.33 Aligned_cols=47 Identities=32% Similarity=0.677 Sum_probs=37.0
Q ss_pred HHHHHhhhhccCCCccccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHhhcc
Q psy384 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFS 100 (101)
Q Consensus 46 ~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd~if~ 100 (101)
+++.+|+.||.|++|+|+.+|+..++..+ |.... ...+++.++.+|+
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~----~~~~~----~~~~~~~~~~~~~ 47 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHL----GRDMS----DEESDEMIDQIFR 47 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT----TSHST----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHh----ccccc----HHHHHHHHHHHHH
Confidence 57899999999999999999999999874 32221 5667777777764
No 16
>KOG0037|consensus
Probab=98.48 E-value=1.5e-06 Score=60.07 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=53.9
Q ss_pred hHHHHHHHH--HhcchhhhhHh----------cccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHH
Q psy384 3 DDKLKQFLF--LMLPLYNYLLY----------LVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEV 70 (101)
Q Consensus 3 ~e~~~~~~~--~~~p~~~~l~~----------~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~ 70 (101)
.+|+++.+. ...|+..+.++ .|+|+|.||......+ ...+.+|+-||+|++|.|+..||+..
T Consensus 76 ~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i------~~Wr~vF~~~D~D~SG~I~~sEL~~A 149 (221)
T KOG0037|consen 76 AKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI------NQWRNVFRTYDRDRSGTIDSSELRQA 149 (221)
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH------HHHHHHHHhcccCCCCcccHHHHHHH
Confidence 355666555 23455554444 3899999998876644 46889999999999999999999999
Q ss_pred HHHHHHhhCCCCC
Q psy384 71 VTSIYDMLGRNIE 83 (101)
Q Consensus 71 l~~l~~~~g~~~~ 83 (101)
+.. +|..++
T Consensus 150 l~~----~Gy~Ls 158 (221)
T KOG0037|consen 150 LTQ----LGYRLS 158 (221)
T ss_pred HHH----cCcCCC
Confidence 996 676655
No 17
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.46 E-value=5.9e-07 Score=50.60 Aligned_cols=49 Identities=22% Similarity=0.319 Sum_probs=40.9
Q ss_pred cccccHHHHHHHHHhhcC----CCHHHHHHHHhhhhccCCCccccHHHHHHHH
Q psy384 23 LVISCMQDFLGILSRVSR----GSVQEKLQWIFGLYDLNGDGLITKKEMEEVV 71 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~----~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l 71 (101)
+|.|+.+|+..++..... ....+.+..+|+.+|.|++|.|+.+|+..++
T Consensus 14 ~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 14 DGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp SSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 599999999999887753 2345677778999999999999999998764
No 18
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.40 E-value=3.9e-07 Score=42.62 Aligned_cols=25 Identities=36% Similarity=0.618 Sum_probs=22.5
Q ss_pred HHHHhhhhccCCCccccHHHHHHHH
Q psy384 47 LQWIFGLYDLNGDGLITKKEMEEVV 71 (101)
Q Consensus 47 l~~aF~~fD~d~~G~Is~~el~~~l 71 (101)
++.+|+.+|.|+||.|+.+|+..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4679999999999999999999864
No 19
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.22 E-value=7e-06 Score=49.45 Aligned_cols=49 Identities=24% Similarity=0.408 Sum_probs=35.2
Q ss_pred HHHHHHHhhhhc-cCCCcc-ccHHHHHHHHHH-HHHhhCCCCCCCCChhhHHHHHH
Q psy384 44 QEKLQWIFGLYD-LNGDGL-ITKKEMEEVVTS-IYDMLGRNIEPQIDDTTVKAHVD 96 (101)
Q Consensus 44 ~e~l~~aF~~fD-~d~~G~-Is~~el~~~l~~-l~~~~g~~~~~~~~~~~~~~~vd 96 (101)
.+.++.+|++|| .+++|+ |+.+|++.+++. +...+|..+ +...+++++.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~----s~~~v~~i~~ 59 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQK----DADAVDKIMK 59 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCC----CHHHHHHHHH
Confidence 467899999997 999995 999999999985 544344322 2444555443
No 20
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.20 E-value=7.5e-06 Score=49.31 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=35.2
Q ss_pred HHHHHHhhhhc-cCCCc-cccHHHHHHHHHH-HHHhhCCCCCCCCChhhHHHHHHh
Q psy384 45 EKLQWIFGLYD-LNGDG-LITKKEMEEVVTS-IYDMLGRNIEPQIDDTTVKAHVDK 97 (101)
Q Consensus 45 e~l~~aF~~fD-~d~~G-~Is~~el~~~l~~-l~~~~g~~~~~~~~~~~~~~~vd~ 97 (101)
..++.+|+.|| +||+| +|+.+||+.+|++ +...+|... +++++++++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~----~~~~v~~~i~~ 59 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIK----EQEVVDKVMET 59 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCC----CHHHHHHHHHH
Confidence 46889999998 89999 6999999999986 222345433 24556665543
No 21
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.17 E-value=1.2e-05 Score=43.12 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=42.8
Q ss_pred cccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHH
Q psy384 23 LVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVV 71 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l 71 (101)
+|.|++++|..++.......+.+.+..+|+.+|.+++|.|+.+++..++
T Consensus 14 ~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 14 DGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred CCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4899999999998877666677788889999999999999999987654
No 22
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.13 E-value=1.2e-05 Score=48.64 Aligned_cols=49 Identities=18% Similarity=0.363 Sum_probs=35.6
Q ss_pred HHHHHHHhhhhcc-CC-CccccHHHHHHHHHH-HHHhhCCCCCCCCChhhHHHHHH
Q psy384 44 QEKLQWIFGLYDL-NG-DGLITKKEMEEVVTS-IYDMLGRNIEPQIDDTTVKAHVD 96 (101)
Q Consensus 44 ~e~l~~aF~~fD~-d~-~G~Is~~el~~~l~~-l~~~~g~~~~~~~~~~~~~~~vd 96 (101)
...++.+|+.||. || +|+|+.+||+.+++. ++..+|..++ +..+++++.
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s----~~ei~~~~~ 58 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKD----PMAVDKIMK 58 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhcccc----HHHHHHHHH
Confidence 4578899999997 97 799999999999986 4444554332 445555554
No 23
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.08 E-value=1e-05 Score=48.94 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=25.0
Q ss_pred HHHHHHhhhhcc-CCCccccHHHHHHHHHH
Q psy384 45 EKLQWIFGLYDL-NGDGLITKKEMEEVVTS 73 (101)
Q Consensus 45 e~l~~aF~~fD~-d~~G~Is~~el~~~l~~ 73 (101)
..++.+|+.||+ +++|+|+.+||+.+|++
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~ 37 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQ 37 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHH
Confidence 457788999999 99999999999998887
No 24
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.04 E-value=1.5e-05 Score=48.37 Aligned_cols=49 Identities=27% Similarity=0.436 Sum_probs=33.6
Q ss_pred HHHHHHhhhhc-cCCCc-cccHHHHHHHHHH-HHHhhCCCCCCCCChhhHHHHHHh
Q psy384 45 EKLQWIFGLYD-LNGDG-LITKKEMEEVVTS-IYDMLGRNIEPQIDDTTVKAHVDK 97 (101)
Q Consensus 45 e~l~~aF~~fD-~d~~G-~Is~~el~~~l~~-l~~~~g~~~~~~~~~~~~~~~vd~ 97 (101)
..+..+|..|| .||+| +||.+||+.++.. +...++.. ..+..+++++..
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~----~~~~~v~~i~~e 61 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQ----KDPMLVDKIMND 61 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccc----cCHHHHHHHHHH
Confidence 46788999999 88999 5999999999977 33333322 234455555543
No 25
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.04 E-value=9.9e-05 Score=44.70 Aligned_cols=59 Identities=29% Similarity=0.290 Sum_probs=48.5
Q ss_pred cccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHhh-CCCCC
Q psy384 23 LVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDML-GRNIE 83 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~-g~~~~ 83 (101)
+|.|+++++..++... +-+++.+..+|+.+|.+++|+|+.+|+..++..+.... |..+.
T Consensus 24 ~G~Is~~el~~~l~~~--~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~ 83 (96)
T smart00027 24 DGTVTGAQAKPILLKS--GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPIP 83 (96)
T ss_pred CCeEeHHHHHHHHHHc--CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCCC
Confidence 4899999999988653 34567789999999999999999999999998886544 55553
No 26
>KOG0027|consensus
Probab=98.01 E-value=2.4e-05 Score=51.08 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=35.7
Q ss_pred cccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHH
Q psy384 23 LVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~ 73 (101)
.|.|+-.++-..+..+....+++++...++-+|.|++|.|+.+|+..+|..
T Consensus 22 ~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~ 72 (151)
T KOG0027|consen 22 DGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEK 72 (151)
T ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHh
Confidence 366777777776666666667777777777777777777777777776665
No 27
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.99 E-value=2.9e-05 Score=46.15 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=35.0
Q ss_pred HHHHHHHhhhhcc--CCCccccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHH
Q psy384 44 QEKLQWIFGLYDL--NGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVD 96 (101)
Q Consensus 44 ~e~l~~aF~~fD~--d~~G~Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd 96 (101)
.+.++.+|+.||. |++|+|+.+|+..+++.. .|..++.+.+...+++++.
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~---~g~~~~~~~~~~ei~~i~~ 58 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETE---LPNFLKNQKDPEAVDKIMK 58 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHH---hhhhccCCCCHHHHHHHHH
Confidence 3568889999999 899999999999999862 2333222233455555543
No 28
>PTZ00183 centrin; Provisional
Probab=97.98 E-value=5e-05 Score=48.87 Aligned_cols=51 Identities=20% Similarity=0.282 Sum_probs=43.8
Q ss_pred cccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHH
Q psy384 23 LVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~ 73 (101)
+|.|+..||..++......-..+.+..+|..+|.+++|.|+.+++..++..
T Consensus 104 ~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 104 TGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred CCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 489999999999886655556678999999999999999999999988764
No 29
>KOG0036|consensus
Probab=97.91 E-value=0.0001 Score=55.44 Aligned_cols=65 Identities=22% Similarity=0.237 Sum_probs=54.9
Q ss_pred cccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHhhcc
Q psy384 23 LVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFS 100 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd~if~ 100 (101)
.|.+||+||...+.. .+.++...|...|.++||.|..+|+.+.++. .|.+ +++++.+.+++++++
T Consensus 65 dg~vDy~eF~~Y~~~-----~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~----~gi~----l~de~~~k~~e~~d~ 129 (463)
T KOG0036|consen 65 DGRVDYSEFKRYLDN-----KELELYRIFQSIDLEHDGKIDPNEIWRYLKD----LGIQ----LSDEKAAKFFEHMDK 129 (463)
T ss_pred CCcccHHHHHHHHHH-----hHHHHHHHHhhhccccCCccCHHHHHHHHHH----hCCc----cCHHHHHHHHHHhcc
Confidence 489999999988763 4668889999999999999999999999986 5544 458888888888875
No 30
>PTZ00184 calmodulin; Provisional
Probab=97.91 E-value=9.2e-05 Score=46.96 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=44.0
Q ss_pred cccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHH
Q psy384 23 LVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l 74 (101)
+|.|++++|..++.........+.+..+|+.+|.+++|.|+.+++..++...
T Consensus 25 ~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 25 DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred CCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 5999999999988766544456788999999999999999999999887643
No 31
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.86 E-value=0.00015 Score=40.34 Aligned_cols=51 Identities=22% Similarity=0.216 Sum_probs=42.9
Q ss_pred cccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHH
Q psy384 23 LVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIY 75 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~ 75 (101)
+|.|+.+|+..++... +-+.+.+...|+.+|.+++|.|+.+|+..++..+.
T Consensus 13 ~G~i~~~el~~~l~~~--g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 13 DGLISGDEARPFLGKS--GLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred CCcCcHHHHHHHHHHc--CCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 4899999999887654 33566789999999999999999999998887654
No 32
>KOG0044|consensus
Probab=97.84 E-value=0.00018 Score=49.26 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=52.0
Q ss_pred hHHHHHHHHHh---cchhhhhHhcccccHHHHHHHHHhhcC-CCHHHHHHHHhhhhccCCCccccHHHHHHHHHHH
Q psy384 3 DDKLKQFLFLM---LPLYNYLLYLVISCMQDFLGILSRVSR-GSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74 (101)
Q Consensus 3 ~e~~~~~~~~~---~p~~~~l~~~g~I~f~eFl~~l~~~~~-~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l 74 (101)
..+++++|... +| +|.++-++|..++..+.+ +++..-...+|+.||.|++|.|+..|+...+..+
T Consensus 25 ~~ei~~~Yr~Fk~~cP-------~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~ 93 (193)
T KOG0044|consen 25 KKEIQQWYRGFKNECP-------SGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLT 93 (193)
T ss_pred HHHHHHHHHHhcccCC-------CCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH
Confidence 35566666555 33 689999999999998875 7788888999999999999999999966665543
No 33
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=97.80 E-value=0.00016 Score=43.66 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=45.7
Q ss_pred cccccHHHHHHHHHh-hcCCCHH-HHHHHHhhhhccCCCccccHHHHHHHHHHHHHhh
Q psy384 23 LVISCMQDFLGILSR-VSRGSVQ-EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDML 78 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~-~~~~~~~-e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~ 78 (101)
+|.|+..|+..++.. +...-+. +.+...++..|.|+||.|+.+|+..++..+....
T Consensus 23 ~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~~ 80 (89)
T cd05022 23 KESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKAV 80 (89)
T ss_pred CCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 589999999999887 4332222 6799999999999999999999999998875443
No 34
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.80 E-value=0.00025 Score=42.05 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=44.0
Q ss_pred cccccHHHHHHHHHhhcC-----CCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHH
Q psy384 23 LVISCMQDFLGILSRVSR-----GSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYD 76 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~-----~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~ 76 (101)
+|.|+..++..++....+ ....+.+..+++.+|.+++|.|+.+++..++..+.+
T Consensus 24 ~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 24 KDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred CCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 489999999998865222 124678999999999999999999999998887643
No 35
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.79 E-value=0.00026 Score=42.54 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=46.0
Q ss_pred cc-cccHHHHHHHHHh-h---cC-CCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHhhC
Q psy384 23 LV-ISCMQDFLGILSR-V---SR-GSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLG 79 (101)
Q Consensus 23 ~g-~I~f~eFl~~l~~-~---~~-~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g 79 (101)
+| .|+..|+..++.. + .. ..+++.+..+|+.+|.|++|.|+.+|+..++..+....+
T Consensus 24 ~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~~~ 86 (92)
T cd05025 24 DKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVACN 86 (92)
T ss_pred CCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 48 5999999999864 2 11 235678999999999999999999999999988765554
No 36
>KOG0031|consensus
Probab=97.75 E-value=8.6e-05 Score=49.16 Aligned_cols=46 Identities=28% Similarity=0.518 Sum_probs=36.1
Q ss_pred HHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHH
Q psy384 43 VQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVD 96 (101)
Q Consensus 43 ~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd 96 (101)
.-.++++||.+.|.|+||.|.+++|+.++.+ +|..++ ++.+++++.
T Consensus 30 QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aS----lGk~~~----d~elDaM~~ 75 (171)
T KOG0031|consen 30 QIQEFKEAFNLMDQNRDGFIDKEDLRDMLAS----LGKIAS----DEELDAMMK 75 (171)
T ss_pred HHHHHHHHHHHHhccCCCcccHHHHHHHHHH----cCCCCC----HHHHHHHHH
Confidence 3468899999999999999999999999886 555433 556666554
No 37
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.74 E-value=0.00021 Score=45.21 Aligned_cols=26 Identities=27% Similarity=0.631 Sum_probs=13.6
Q ss_pred HHHHHHhhhhccCCCccccHHHHHHH
Q psy384 45 EKLQWIFGLYDLNGDGLITKKEMEEV 70 (101)
Q Consensus 45 e~l~~aF~~fD~d~~G~Is~~el~~~ 70 (101)
.++.|+|..+|.|+||+|+.+||..+
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~ 73 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPI 73 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHH
Confidence 34555555555555555555555533
No 38
>KOG0034|consensus
Probab=97.66 E-value=0.00026 Score=48.24 Aligned_cols=70 Identities=20% Similarity=0.224 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcchhh---hhH---h------cccccHHHHHHHHHhhcC-CCH------HHHHHHHhhhhccCCCccccH
Q psy384 4 DKLKQFLFLMLPLYN---YLL---Y------LVISCMQDFLGILSRVSR-GSV------QEKLQWIFGLYDLNGDGLITK 64 (101)
Q Consensus 4 e~~~~~~~~~~p~~~---~l~---~------~g~I~f~eFl~~l~~~~~-~~~------~e~l~~aF~~fD~d~~G~Is~ 64 (101)
++|..++....|... ++- + +|.|+.+|+..++..+.. +.. ++.+...|..+|.|+||+|+.
T Consensus 87 ~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~Isf 166 (187)
T KOG0034|consen 87 EEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISF 166 (187)
T ss_pred HHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcH
Confidence 566666666666552 222 1 599999999999987765 222 345677899999999999999
Q ss_pred HHHHHHHHH
Q psy384 65 KEMEEVVTS 73 (101)
Q Consensus 65 ~el~~~l~~ 73 (101)
+|...++..
T Consensus 167 eEf~~~v~~ 175 (187)
T KOG0034|consen 167 EEFCKVVEK 175 (187)
T ss_pred HHHHHHHHc
Confidence 999998875
No 39
>KOG2643|consensus
Probab=97.64 E-value=2.5e-05 Score=58.98 Aligned_cols=50 Identities=28% Similarity=0.486 Sum_probs=41.9
Q ss_pred cccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHH
Q psy384 23 LVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l 74 (101)
.|-|+|.||+-.+..+.. ++.-.+-||++||.||||-|+++|+..++.-+
T Consensus 213 ~GLIsfSdYiFLlTlLS~--p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li 262 (489)
T KOG2643|consen 213 SGLISFSDYIFLLTLLSI--PERNFRIAFKMFDLDGNGEIDKEEFETVQQLI 262 (489)
T ss_pred CCeeeHHHHHHHHHHHcc--CcccceeeeeeeecCCCCcccHHHHHHHHHHH
Confidence 489999999988887764 33456789999999999999999999887644
No 40
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.64 E-value=5.1e-05 Score=34.52 Aligned_cols=27 Identities=33% Similarity=0.641 Sum_probs=24.4
Q ss_pred HHHHhhhhccCCCccccHHHHHHHHHH
Q psy384 47 LQWIFGLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 47 l~~aF~~fD~d~~G~Is~~el~~~l~~ 73 (101)
++.+|+.+|.+++|.|+..++..++.+
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 577999999999999999999998865
No 41
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.64 E-value=0.00024 Score=42.88 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=43.1
Q ss_pred ccccHHHHHHHHHhhc-----CCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHH
Q psy384 24 VISCMQDFLGILSRVS-----RGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIY 75 (101)
Q Consensus 24 g~I~f~eFl~~l~~~~-----~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~ 75 (101)
|.|+..|+..++.... ...+++.+...++.+|.+++|.|+.+|+..++..+.
T Consensus 25 G~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 25 NTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred CeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 8999999999886421 233567899999999999999999999998887653
No 42
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.60 E-value=0.00068 Score=40.74 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=44.9
Q ss_pred cc-cccHHHHHHHHHh-----hcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHH
Q psy384 23 LV-ISCMQDFLGILSR-----VSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYD 76 (101)
Q Consensus 23 ~g-~I~f~eFl~~l~~-----~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~ 76 (101)
+| .|+..|+..+|.. .....+++.+...++..|.|++|.|+.+|+..++..+..
T Consensus 23 dG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~ 82 (88)
T cd05027 23 DKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTT 82 (88)
T ss_pred CcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 47 5999999999987 333456677999999999999999999999998887643
No 43
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=97.58 E-value=0.00042 Score=46.15 Aligned_cols=50 Identities=18% Similarity=0.322 Sum_probs=45.0
Q ss_pred cccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHH
Q psy384 23 LVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVT 72 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~ 72 (101)
+|.|+..+...++..+-...+.+++...++.+|.|++|+|+.+++...+.
T Consensus 106 dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 106 DGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred CceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 49999999999999776667888999999999999999999999998764
No 44
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.53 E-value=0.00045 Score=41.37 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=44.8
Q ss_pred cccccHHHHHHHHHhhcC-----CCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHh
Q psy384 23 LVISCMQDFLGILSRVSR-----GSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDM 77 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~-----~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~ 77 (101)
+|.|+..|+..++....+ ...++.+...|+.+|.|++|.|+.+|+..++..+...
T Consensus 24 ~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~~ 83 (88)
T cd05030 24 PDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVA 83 (88)
T ss_pred cccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 369999999999864322 1237889999999999999999999999999887543
No 45
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.49 E-value=0.00052 Score=41.23 Aligned_cols=47 Identities=23% Similarity=0.453 Sum_probs=34.4
Q ss_pred HHHHHhhhhcc-CC-CccccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHh
Q psy384 46 KLQWIFGLYDL-NG-DGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDK 97 (101)
Q Consensus 46 ~l~~aF~~fD~-d~-~G~Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd~ 97 (101)
.+...|..||. || +|+|+.+||+.+++... .+|.+++ ++++++++..
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~-~lg~k~t----~~ev~~m~~~ 59 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKEL-TIGSKLQ----DAEIAKLMED 59 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHH-hcCCCCC----HHHHHHHHHH
Confidence 56778999998 77 89999999999997532 2565543 5566666543
No 46
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.49 E-value=0.00057 Score=41.33 Aligned_cols=55 Identities=15% Similarity=0.025 Sum_probs=44.6
Q ss_pred cc-cccHHHHHHHHHhhc-----CCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHh
Q psy384 23 LV-ISCMQDFLGILSRVS-----RGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDM 77 (101)
Q Consensus 23 ~g-~I~f~eFl~~l~~~~-----~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~ 77 (101)
+| +|+..|+..++.... .....+.+..+++.+|.|++|.|+.+|+..++..+...
T Consensus 25 dg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~ 85 (93)
T cd05026 25 DRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVA 85 (93)
T ss_pred CCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHH
Confidence 35 599999999986532 22356689999999999999999999999999887543
No 47
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.47 E-value=0.0007 Score=40.67 Aligned_cols=54 Identities=7% Similarity=0.066 Sum_probs=44.7
Q ss_pred ccccHHHHHHHHHhh---cCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHh
Q psy384 24 VISCMQDFLGILSRV---SRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDM 77 (101)
Q Consensus 24 g~I~f~eFl~~l~~~---~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~ 77 (101)
|.|+-+||..++... ....+++.+...|+..|.|++|.|+.+|+..++..+...
T Consensus 27 g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~~ 83 (88)
T cd05029 27 NTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALALI 83 (88)
T ss_pred CEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 699999999999642 223466789999999999999999999999998877543
No 48
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.47 E-value=0.00016 Score=45.74 Aligned_cols=40 Identities=20% Similarity=0.154 Sum_probs=30.4
Q ss_pred ccccHHHHHHHHHhhcCCCHHH----HHHHHhhhhccCCCccccHHHHHHHH
Q psy384 24 VISCMQDFLGILSRVSRGSVQE----KLQWIFGLYDLNGDGLITKKEMEEVV 71 (101)
Q Consensus 24 g~I~f~eFl~~l~~~~~~~~~e----~l~~aF~~fD~d~~G~Is~~el~~~l 71 (101)
|.|+.+|...+. .. .+...|+.+|.|+||+||.+|+..++
T Consensus 63 G~Ls~~EL~~~~--------l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 63 GKLSHHELAPIR--------LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred CcCCHHHHHHHH--------ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 667777765432 31 24458999999999999999999887
No 49
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.45 E-value=0.00058 Score=41.13 Aligned_cols=54 Identities=17% Similarity=0.208 Sum_probs=44.5
Q ss_pred ccccHHHHHHHHHhhcC-----CCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHh
Q psy384 24 VISCMQDFLGILSRVSR-----GSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDM 77 (101)
Q Consensus 24 g~I~f~eFl~~l~~~~~-----~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~ 77 (101)
+.|+.+||...+....+ ......+..+++.+|.|+||.|+.+|+..++..+...
T Consensus 26 ~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~~ 84 (89)
T cd05023 26 YQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAVA 84 (89)
T ss_pred CeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 38999999999886532 3345678889999999999999999999999887543
No 50
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.35 E-value=0.00034 Score=42.33 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhhccCCCccccHHHHHHHHHH
Q psy384 43 VQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 43 ~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~ 73 (101)
..+.++.+|+.||.|++|+|+.+|++.++..
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~ 38 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 3457899999999999999999999999876
No 51
>KOG0030|consensus
Probab=97.35 E-value=0.00062 Score=44.44 Aligned_cols=38 Identities=32% Similarity=0.533 Sum_probs=33.2
Q ss_pred CHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHhhCCCCC
Q psy384 42 SVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIE 83 (101)
Q Consensus 42 ~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g~~~~ 83 (101)
+..++++.+|.+||..+||+|+......+|++ +|.+++
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRa----lG~nPT 45 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRA----LGQNPT 45 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHH----hcCCCc
Confidence 45578999999999999999999999999885 777765
No 52
>KOG0751|consensus
Probab=97.33 E-value=0.0014 Score=50.63 Aligned_cols=72 Identities=13% Similarity=0.225 Sum_probs=54.7
Q ss_pred CchHHHHHHHHHhc---chhhhhHh----------cccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHH
Q psy384 1 MYDDKLKQFLFLML---PLYNYLLY----------LVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEM 67 (101)
Q Consensus 1 ~~~e~~~~~~~~~~---p~~~~l~~----------~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el 67 (101)
|+-++|...+..+. ...+++.+ .|.|+|+||...-+.+|.. ....+.||.+||+.++|.+|.+++
T Consensus 53 mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~p--Dal~~~aFqlFDr~~~~~vs~~~~ 130 (694)
T KOG0751|consen 53 MTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAP--DALFEVAFQLFDRLGNGEVSFEDV 130 (694)
T ss_pred cCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCc--hHHHHHHHHHhcccCCCceehHHH
Confidence 56677777776652 22223332 4899999999988887754 446778999999999999999999
Q ss_pred HHHHHHH
Q psy384 68 EEVVTSI 74 (101)
Q Consensus 68 ~~~l~~l 74 (101)
..+....
T Consensus 131 ~~if~~t 137 (694)
T KOG0751|consen 131 ADIFGQT 137 (694)
T ss_pred HHHHhcc
Confidence 9998764
No 53
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.31 E-value=0.00028 Score=39.24 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=24.0
Q ss_pred HHHhhhhccCCCccccHHHHHHHHHH
Q psy384 48 QWIFGLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 48 ~~aF~~fD~d~~G~Is~~el~~~l~~ 73 (101)
+.+|+.+|.|++|+|+.+|+..++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~ 27 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGK 27 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 56899999999999999999999876
No 54
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.31 E-value=0.001 Score=49.99 Aligned_cols=26 Identities=38% Similarity=0.498 Sum_probs=12.5
Q ss_pred HHhhhhccCCCccccHHHHHHHHHHH
Q psy384 49 WIFGLYDLNGDGLITKKEMEEVVTSI 74 (101)
Q Consensus 49 ~aF~~fD~d~~G~Is~~el~~~l~~l 74 (101)
..|+.+|.|++|.|+.+|+..++...
T Consensus 361 ~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 361 AVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 34444455555555555544444443
No 55
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.24 E-value=0.001 Score=35.30 Aligned_cols=28 Identities=36% Similarity=0.680 Sum_probs=25.4
Q ss_pred HHHHhhhhccCCCccccHHHHHHHHHHH
Q psy384 47 LQWIFGLYDLNGDGLITKKEMEEVVTSI 74 (101)
Q Consensus 47 l~~aF~~fD~d~~G~Is~~el~~~l~~l 74 (101)
+..+|+.+|.+++|.|+.+|+..++..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~ 29 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL 29 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 5678999999999999999999998864
No 56
>KOG2562|consensus
Probab=97.13 E-value=0.0016 Score=49.70 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=46.9
Q ss_pred cccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHhh
Q psy384 23 LVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDML 78 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~ 78 (101)
.|.++|++|+..+-.....+...-+..-|++.|.+|+|.++..||+.+-......+
T Consensus 329 eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm 384 (493)
T KOG2562|consen 329 EGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRM 384 (493)
T ss_pred cCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHH
Confidence 48999999999877666555666789999999999999999999998877765443
No 57
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.11 E-value=0.0035 Score=34.07 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=35.0
Q ss_pred ccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHH
Q psy384 26 SCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74 (101)
Q Consensus 26 I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l 74 (101)
++|.|.-..+..+--.-.++-+..+|+..|++++|.+..+|+..+.+.+
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 5677776666544333455677889999999999999999999887753
No 58
>PF14658 EF-hand_9: EF-hand domain
Probab=96.95 E-value=0.0022 Score=36.69 Aligned_cols=41 Identities=7% Similarity=0.265 Sum_probs=31.5
Q ss_pred HHhhhhccCCCccccHHHHHHHHHHHHHhhCC-CCCCCCChhhHHHHHHh
Q psy384 49 WIFGLYDLNGDGLITKKEMEEVVTSIYDMLGR-NIEPQIDDTTVKAHVDK 97 (101)
Q Consensus 49 ~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g~-~~~~~~~~~~~~~~vd~ 97 (101)
.+|.+||.+++|.|...++..+|++ +|. .+ .++.++.+...
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra----~~~~~p----~e~~Lq~l~~e 43 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRA----VTGRSP----EESELQDLINE 43 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHH----HcCCCC----cHHHHHHHHHH
Confidence 3799999999999999999999987 443 33 25666666543
No 59
>KOG4666|consensus
Probab=96.91 E-value=0.0016 Score=47.95 Aligned_cols=51 Identities=10% Similarity=0.146 Sum_probs=46.9
Q ss_pred cccccHHHHHHHHHhhcC-CCHHHHHHHHhhhhccCCCccccHHHHHHHHHH
Q psy384 23 LVISCMQDFLGILSRVSR-GSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~-~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~ 73 (101)
+|.+||.|.+..++.+|+ ....+.++.||++|+.+-||++...+|..+++.
T Consensus 273 tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 273 TGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred CCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 489999999999999985 578899999999999999999999999998887
No 60
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=96.89 E-value=0.0034 Score=37.75 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=26.1
Q ss_pred HHHHHHhhh-hccCCCc-cccHHHHHHHHHHH
Q psy384 45 EKLQWIFGL-YDLNGDG-LITKKEMEEVVTSI 74 (101)
Q Consensus 45 e~l~~aF~~-fD~d~~G-~Is~~el~~~l~~l 74 (101)
..+..+|+. +|.+|+| +||++||+.++..-
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e 40 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTE 40 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHh
Confidence 567889999 6888986 99999999999875
No 61
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.77 E-value=0.0063 Score=45.85 Aligned_cols=58 Identities=31% Similarity=0.516 Sum_probs=42.7
Q ss_pred CHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHhhcc
Q psy384 42 SVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFS 100 (101)
Q Consensus 42 ~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd~if~ 100 (101)
..+..++.+|++||.||+|+|+.+|+.. +..++.....+-.-.++.++..+.+..+|+
T Consensus 331 ~~~~~l~~aF~~~D~dgdG~Is~~E~~~-~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 331 AFTHAAQEIFRLYDLDGDGFITREEWLG-SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred hhhHHHHHHHHHhCCCCCCcCcHHHHHH-HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 4667899999999999999999999863 344454554333334667788888877775
No 62
>KOG0028|consensus
Probab=96.50 E-value=0.042 Score=36.74 Aligned_cols=52 Identities=15% Similarity=0.145 Sum_probs=38.7
Q ss_pred cccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHH
Q psy384 23 LVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l 74 (101)
+|+|++.|+-.++-.+--....+++...-.-+|++|+|+|+.++++.+|+..
T Consensus 47 ~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k 98 (172)
T KOG0028|consen 47 AGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVK 98 (172)
T ss_pred CCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHH
Confidence 4899999994444333222344556667788999999999999999998874
No 63
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.46 E-value=0.027 Score=34.93 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcchhhhhHhcccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHhh
Q psy384 4 DKLKQFLFLMLPLYNYLLYLVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDML 78 (101)
Q Consensus 4 e~~~~~~~~~~p~~~~l~~~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~ 78 (101)
+.+.++|..+.|- +|.|+-.+-...+... +-+.+.|...+.+-|.|++|+++.+|+...|.-+...+
T Consensus 10 ~~y~~~F~~l~~~------~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~ 76 (104)
T PF12763_consen 10 QKYDQIFQSLDPQ------DGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKL 76 (104)
T ss_dssp HHHHHHHHCTSSS------TTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC------CCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHh
Confidence 4555666555541 3888888877654422 34568899999999999999999999999988775543
No 64
>PF14658 EF-hand_9: EF-hand domain
Probab=96.45 E-value=0.016 Score=33.12 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=45.5
Q ss_pred cccccHHHHHHHHHhhcC-CCHHHHHHHHhhhhccCCC-ccccHHHHHHHHHH
Q psy384 23 LVISCMQDFLGILSRVSR-GSVQEKLQWIFGLYDLNGD-GLITKKEMEEVVTS 73 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~-~~~~e~l~~aF~~fD~d~~-G~Is~~el~~~l~~ 73 (101)
.|.|.-.+.+..|-.... +..+.+|...-+.+|++|. |.|+.+.+..+|+.
T Consensus 12 tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 12 TGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred CceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 489999999998887765 7788899999999999999 99999999999875
No 65
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.30 E-value=0.021 Score=34.69 Aligned_cols=55 Identities=9% Similarity=0.016 Sum_probs=44.4
Q ss_pred ccccHHHHHHHHHhhcC-----CCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHhh
Q psy384 24 VISCMQDFLGILSRVSR-----GSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDML 78 (101)
Q Consensus 24 g~I~f~eFl~~l~~~~~-----~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~ 78 (101)
++++-.||-..+..-.+ ....+.+..+++-.|.|+||.|+..|+..++..+....
T Consensus 22 ~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ac 81 (91)
T cd05024 22 NYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIAC 81 (91)
T ss_pred CcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 68999999988864332 34567889999999999999999999999988875433
No 66
>KOG0037|consensus
Probab=96.18 E-value=0.055 Score=37.74 Aligned_cols=73 Identities=10% Similarity=0.091 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcchhhhhHh------cccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHh
Q psy384 4 DKLKQFLFLMLPLYNYLLY------LVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDM 77 (101)
Q Consensus 4 e~~~~~~~~~~p~~~~l~~------~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~ 77 (101)
+||+.++..++.- +.+++ +|+|+-.|+-.++..+--.-+.+-+..+++-||..++|.|..+++.+++..+..+
T Consensus 114 ~EF~~Lw~~i~~W-r~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~l 192 (221)
T KOG0037|consen 114 KEFKALWKYINQW-RNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRL 192 (221)
T ss_pred HHHHHHHHHHHHH-HHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHH
Confidence 5777777666542 23332 6999999999998876544456678888999999889999999999888776543
No 67
>KOG0041|consensus
Probab=96.11 E-value=0.016 Score=40.22 Aligned_cols=30 Identities=23% Similarity=0.494 Sum_probs=26.4
Q ss_pred HHHHHHhhhhccCCCccccHHHHHHHHHHH
Q psy384 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74 (101)
Q Consensus 45 e~l~~aF~~fD~d~~G~Is~~el~~~l~~l 74 (101)
.....+|+.||.+.||+|+..||+.+|..+
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL 128 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKL 128 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHh
Confidence 345678999999999999999999999874
No 68
>KOG2643|consensus
Probab=95.83 E-value=0.012 Score=44.95 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=37.5
Q ss_pred ccccHHHHHHHHHhhcCCC-HHHHHHHHhhhhccCCCccccHHHHHHHHHHH
Q psy384 24 VISCMQDFLGILSRVSRGS-VQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74 (101)
Q Consensus 24 g~I~f~eFl~~l~~~~~~~-~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l 74 (101)
+.|+-.+|-.+....+... ....+.-+|.+||.|+||.+|.+|+..+|+.-
T Consensus 403 ~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 403 ASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred CCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 4677777766655554321 12255668999999999999999999999874
No 69
>PLN02964 phosphatidylserine decarboxylase
Probab=95.82 E-value=0.073 Score=42.58 Aligned_cols=28 Identities=18% Similarity=0.465 Sum_probs=26.0
Q ss_pred HHHHhhhhccCCCccccHHHHHHHHHHH
Q psy384 47 LQWIFGLYDLNGDGLITKKEMEEVVTSI 74 (101)
Q Consensus 47 l~~aF~~fD~d~~G~Is~~el~~~l~~l 74 (101)
++.+|+.+|.|++|.|+.+|+..+|..+
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~l 208 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAF 208 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 8899999999999999999999999863
No 70
>KOG4065|consensus
Probab=95.80 E-value=0.06 Score=34.35 Aligned_cols=57 Identities=21% Similarity=0.402 Sum_probs=45.8
Q ss_pred HHHHHH-HhhhhccCCCccccHHHHHHHHHHHHH--hhCCCCCCCCChhhHHHHHHhhcc
Q psy384 44 QEKLQW-IFGLYDLNGDGLITKKEMEEVVTSIYD--MLGRNIEPQIDDTTVKAHVDKIFS 100 (101)
Q Consensus 44 ~e~l~~-aF~~fD~d~~G~Is~~el~~~l~~l~~--~~g~~~~~~~~~~~~~~~vd~if~ 100 (101)
.+.+++ -|++.|.|++|++.--||...++...+ ..|...-|-.++.+++.+||.|+.
T Consensus 65 peqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~ 124 (144)
T KOG4065|consen 65 PEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLD 124 (144)
T ss_pred HHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhc
Confidence 344554 699999999999999999999998877 456655555688999999998864
No 71
>KOG4223|consensus
Probab=95.68 E-value=0.0094 Score=43.67 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=35.8
Q ss_pred cccccHHHHHHHHHhhcCCC--HH---HHHHHHhhhhccCCCccccHHHHHHHH
Q psy384 23 LVISCMQDFLGILSRVSRGS--VQ---EKLQWIFGLYDLNGDGLITKKEMEEVV 71 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~~~--~~---e~l~~aF~~fD~d~~G~Is~~el~~~l 71 (101)
.|.|+++||+.-|......+ ++ .+-...|..+|+|+||+++.+|+++.+
T Consensus 214 DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI 267 (325)
T KOG4223|consen 214 DGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWI 267 (325)
T ss_pred CCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhccc
Confidence 38999999999887554311 11 122356778899999999999999654
No 72
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=95.68 E-value=0.022 Score=27.15 Aligned_cols=28 Identities=11% Similarity=-0.038 Sum_probs=19.3
Q ss_pred HHHHHHHHhcchhhhhHhcccccHHHHHHHHHh
Q psy384 5 KLKQFLFLMLPLYNYLLYLVISCMQDFLGILSR 37 (101)
Q Consensus 5 ~~~~~~~~~~p~~~~l~~~g~I~f~eFl~~l~~ 37 (101)
|+++++..+-..+ +|.|+++||..+|..
T Consensus 1 E~~~~F~~~D~d~-----dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDG-----DGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTS-----SSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCC-----CCcCCHHHHHHHHHh
Confidence 3555555554333 599999999998864
No 73
>KOG4347|consensus
Probab=95.61 E-value=0.016 Score=45.97 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=43.4
Q ss_pred hhhHh------cccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHH
Q psy384 18 NYLLY------LVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEM 67 (101)
Q Consensus 18 ~~l~~------~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el 67 (101)
.++++ .|.++|.+++.+++.++.+..-+++..+|++||.+++ ....++.
T Consensus 558 ~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 558 ERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 56666 4899999999999999999899999999999999999 8877776
No 74
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=95.57 E-value=0.051 Score=32.38 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=24.4
Q ss_pred HHHHHHhhhhccC--CCccccHHHHHHHHHH
Q psy384 45 EKLQWIFGLYDLN--GDGLITKKEMEEVVTS 73 (101)
Q Consensus 45 e~l~~aF~~fD~d--~~G~Is~~el~~~l~~ 73 (101)
..+...|.-|+.+ ++|+|+.+||+.++..
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~ 38 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEK 38 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHH
Confidence 4567789999866 4899999999999974
No 75
>KOG0377|consensus
Probab=94.27 E-value=0.15 Score=39.43 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=36.1
Q ss_pred HHHHHhhhhccCCCccccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHH
Q psy384 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVD 96 (101)
Q Consensus 46 ~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd 96 (101)
.|.-.|+..|.|++|.||.+|++...+-+.+.+.. +++++.+.+++.
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~----~i~~~~i~~la~ 594 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNG----AISDDEILELAR 594 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCC----CcCHHHHHHHHH
Confidence 46678999999999999999999998876555543 455666666654
No 76
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.18 E-value=0.039 Score=31.81 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=24.8
Q ss_pred HHHHHHHHhhhhccCCCccccHHHHHHHHH
Q psy384 43 VQEKLQWIFGLYDLNGDGLITKKEMEEVVT 72 (101)
Q Consensus 43 ~~e~l~~aF~~fD~d~~G~Is~~el~~~l~ 72 (101)
+.+.+..||+.. .++.++||.+||++.|.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 457889999999 88999999999998753
No 77
>KOG0040|consensus
Probab=93.88 E-value=0.11 Score=45.35 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=48.1
Q ss_pred HHHHHHHHhcchhhhhHhcccccHHHHHHHHHhhcC--CCHHHHHHHHhhhhccCCCccccHHHHHHHH
Q psy384 5 KLKQFLFLMLPLYNYLLYLVISCMQDFLGILSRVSR--GSVQEKLQWIFGLYDLNGDGLITKKEMEEVV 71 (101)
Q Consensus 5 ~~~~~~~~~~p~~~~l~~~g~I~f~eFl~~l~~~~~--~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l 71 (101)
+|++++..+.|.. .|.|+..+|+.+|..... --+.+.+..||+..|. |.-||+++++.+-|
T Consensus 2297 ~fe~~ld~vDP~r-----~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~l 2359 (2399)
T KOG0040|consen 2297 EFEEILDLVDPNR-----DGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQNL 2359 (2399)
T ss_pred hHHHHHHhcCCCC-----cCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHHHhcC
Confidence 7888888888754 499999999999876543 2344589999999999 88899999995443
No 78
>KOG0377|consensus
Probab=93.85 E-value=0.27 Score=38.06 Aligned_cols=51 Identities=22% Similarity=0.204 Sum_probs=40.4
Q ss_pred cccccHHHHHHHHHhhc---CC-CHHHHHHHHhhhhccCCCccccHHHHHHHHHH
Q psy384 23 LVISCMQDFLGILSRVS---RG-SVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~---~~-~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~ 73 (101)
+|.|+.+||..+...+. ++ -..+.+...-+..|.|+||+|+..|+-....-
T Consensus 561 SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 561 SGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred CCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 59999999999877664 22 34566777888999999999999988776653
No 79
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=92.02 E-value=0.49 Score=24.98 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=20.9
Q ss_pred CCccccHHHHHHHHHHHHHhhCCC-CCCCCChhhHHHHHH
Q psy384 58 GDGLITKKEMEEVVTSIYDMLGRN-IEPQIDDTTVKAHVD 96 (101)
Q Consensus 58 ~~G~Is~~el~~~l~~l~~~~g~~-~~~~~~~~~~~~~vd 96 (101)
.+|+|+.++|+.++.. +|.+ ++ +++++.++.
T Consensus 1 ~~G~i~~~~~~~~l~~----~g~~~~s----~~e~~~l~~ 32 (54)
T PF13833_consen 1 KDGKITREEFRRALSK----LGIKDLS----EEEVDRLFR 32 (54)
T ss_dssp SSSEEEHHHHHHHHHH----TTSSSSC----HHHHHHHHH
T ss_pred CcCEECHHHHHHHHHH----hCCCCCC----HHHHHHHHH
Confidence 4799999999999853 5654 33 555555443
No 80
>KOG0751|consensus
Probab=92.01 E-value=0.29 Score=38.36 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=39.2
Q ss_pred ccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHH
Q psy384 24 VISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74 (101)
Q Consensus 24 g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l 74 (101)
-.++|.+|...+..+ ..|..+.+|+..|+.++|.||.=++..+|.++
T Consensus 162 r~~ny~~f~Q~lh~~----~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~ 208 (694)
T KOG0751|consen 162 RHLNYAEFTQFLHEF----QLEHAEQAFREKDKAKNGFISVLDFQDIMVTI 208 (694)
T ss_pred HhccHHHHHHHHHHH----HHHHHHHHHHHhcccCCCeeeeechHhhhhhh
Confidence 368888888887765 34557889999999999999999999988875
No 81
>KOG0039|consensus
Probab=92.01 E-value=0.39 Score=38.47 Aligned_cols=66 Identities=24% Similarity=0.336 Sum_probs=49.9
Q ss_pred ccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHhhcc
Q psy384 24 VISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFS 100 (101)
Q Consensus 24 g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd~if~ 100 (101)
| ++++||. ....+.+.+++..|.++|. ++|.++.+++..++.....+... ....+...+....+++
T Consensus 3 ~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 68 (646)
T KOG0039|consen 3 G-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWL----SLIKKQTEEYAALIME 68 (646)
T ss_pred C-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhh----hhhhhhhhHHHHHhhh
Confidence 5 8899998 4457889999999999998 99999999999999887665541 1224455555555543
No 82
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=91.27 E-value=0.76 Score=26.39 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=35.8
Q ss_pred HHHHHHhhhhccCCCccccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHhhccC
Q psy384 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFSE 101 (101)
Q Consensus 45 e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd~if~~ 101 (101)
+.+..+....+....--+-..+|+.....+.+++|.. ..+++.|+||+.
T Consensus 23 ~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~--------~~ediLd~IFs~ 71 (73)
T PF12631_consen 23 EHLEDALEALENGLPLDLVAEDLREALESLGEITGEV--------VTEDILDNIFSN 71 (73)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS----------HHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCC--------ChHHHHHHHHHh
Confidence 4566667676666555678899999999999999964 347899999974
No 83
>KOG4223|consensus
Probab=89.94 E-value=0.92 Score=33.49 Aligned_cols=45 Identities=20% Similarity=0.384 Sum_probs=26.9
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHH
Q psy384 29 QDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 29 ~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~ 73 (101)
.++......+.+..+.+++...+...|.+++|+|+..|+...+..
T Consensus 61 ~e~~~~fd~l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~ 105 (325)
T KOG4223|consen 61 DEFADEFDQLTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQ 105 (325)
T ss_pred hhhhhhhhhhCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHH
Confidence 444444444444455666666666667667777776666665554
No 84
>KOG0041|consensus
Probab=89.78 E-value=2.5 Score=29.57 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=43.0
Q ss_pred cccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHH
Q psy384 23 LVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l 74 (101)
.|.|++.|.-.+|..+-...++--++..-+-.|-|.+|+||..|+--+....
T Consensus 113 DgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 113 DGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred cccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 4899999999999888765566677888889999999999988887776653
No 85
>KOG2871|consensus
Probab=89.70 E-value=0.15 Score=38.36 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=30.6
Q ss_pred CHHHHHHHHhhhhccCCCccccHHHHHHHHHHHH
Q psy384 42 SVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIY 75 (101)
Q Consensus 42 ~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~ 75 (101)
++.+.++++|+.||+.++|+|+-.-++.+|+.+.
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N 339 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALN 339 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhc
Confidence 3567899999999999999999999999998865
No 86
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=88.72 E-value=1.4 Score=26.64 Aligned_cols=52 Identities=13% Similarity=0.459 Sum_probs=33.3
Q ss_pred HHHHHHHhhhhccCCCccccHHHHHHHHHHHHHh---hCCCCCCCCChhhHHHHHHhhcc
Q psy384 44 QEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDM---LGRNIEPQIDDTTVKAHVDKIFS 100 (101)
Q Consensus 44 ~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~---~g~~~~~~~~~~~~~~~vd~if~ 100 (101)
.+|++.+|+.+ .|.+|.++..-|..++..+..+ +|+..+ .. -++..|...|+
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~a--Fg--~~e~sv~sCF~ 56 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPA--FG--YIEPSVRSCFQ 56 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGG--GT----HHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCcccc--cc--CcHHHHHHHhc
Confidence 57999999999 7999999999999999988543 454321 21 15555555553
No 87
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=88.57 E-value=0.21 Score=31.28 Aligned_cols=31 Identities=23% Similarity=0.533 Sum_probs=21.7
Q ss_pred CHHHHHHHHhhhhccCCCccccHHHHHHHHH
Q psy384 42 SVQEKLQWIFGLYDLNGDGLITKKEMEEVVT 72 (101)
Q Consensus 42 ~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~ 72 (101)
.-...+.|-|.-+|.|+||+++..|++.+..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~ 81 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRR 81 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGS
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHH
Confidence 3456788999999999999999999887644
No 88
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=87.75 E-value=0.53 Score=29.43 Aligned_cols=45 Identities=16% Similarity=0.063 Sum_probs=30.4
Q ss_pred cccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHH
Q psy384 23 LVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEE 69 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~ 69 (101)
+|.++-.|+..+...+ ...+..++..|+..|.|+||.||..|...
T Consensus 68 d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 68 DGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred CCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3778877776654433 23445678889999999999999998653
No 89
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=87.59 E-value=3.8 Score=23.57 Aligned_cols=50 Identities=18% Similarity=0.168 Sum_probs=36.1
Q ss_pred ccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHhhC
Q psy384 24 VISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLG 79 (101)
Q Consensus 24 g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g 79 (101)
-.+.|...+.+++...+.+..+.+. ..|+.=..+.|+++|+...|+. .+|
T Consensus 7 p~~~F~~L~~~l~~~l~~~~~~~l~---~~Y~~~k~~kIsR~~fvr~lR~---IVG 56 (70)
T PF12174_consen 7 PWMPFPMLFSALSKHLPPSKMDLLQ---KHYEEFKKKKISREEFVRKLRQ---IVG 56 (70)
T ss_pred CcccHHHHHHHHHHHCCHHHHHHHH---HHHHHHHHCCCCHHHHHHHHHH---HHH
Confidence 3678888888888776654444444 4444446789999999999887 466
No 90
>KOG0036|consensus
Probab=86.76 E-value=2.9 Score=32.15 Aligned_cols=50 Identities=16% Similarity=0.076 Sum_probs=42.4
Q ss_pred cccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHH
Q psy384 23 LVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVT 72 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~ 72 (101)
+|.|+-+|.-..+...--.-..+++...|+.-|++|++.|..+|.+..+.
T Consensus 96 dG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 96 DGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred CCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 59999999988888776555667788899999999999999999998764
No 91
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=85.61 E-value=0.95 Score=28.95 Aligned_cols=49 Identities=18% Similarity=0.335 Sum_probs=32.4
Q ss_pred cccHHHHHHHHHhhc-------CC--C---------HHHHHHHHhhhhccCCCccccHHHHHHHHHH
Q psy384 25 ISCMQDFLGILSRVS-------RG--S---------VQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 25 ~I~f~eFl~~l~~~~-------~~--~---------~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~ 73 (101)
.++..+....++... +. + .+--+.|...+||.+++|.|+.-.++..+..
T Consensus 59 ~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 59 SLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 578888777766433 11 1 1225789999999999999999888877654
No 92
>KOG0040|consensus
Probab=85.55 E-value=1.5 Score=38.87 Aligned_cols=38 Identities=24% Similarity=0.557 Sum_probs=30.5
Q ss_pred CCHHHHHH---HHhhhhccCCCccccHHHHHHHHHHHHHhhCCCC
Q psy384 41 GSVQEKLQ---WIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI 82 (101)
Q Consensus 41 ~~~~e~l~---~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g~~~ 82 (101)
|-+++.|+ .+|+.||++.+|.++..+++.+|++ .|.++
T Consensus 2246 GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrs----lgY~l 2286 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRS----LGYDL 2286 (2399)
T ss_pred CCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHh----cCCCC
Confidence 44555444 5899999999999999999999986 56654
No 93
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=85.45 E-value=3.3 Score=25.08 Aligned_cols=28 Identities=11% Similarity=0.354 Sum_probs=22.1
Q ss_pred HHHHHHhhhhccCCCccccHHHHHHHHHH
Q psy384 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 45 e~l~~aF~~fD~d~~G~Is~~el~~~l~~ 73 (101)
+.+...|.-|-. +.|.+++.||+.+|.+
T Consensus 8 ~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~ 35 (91)
T cd05024 8 EKMMLTFHKFAG-EKNYLNRDDLQKLMEK 35 (91)
T ss_pred HHHHHHHHHHcC-CCCcCCHHHHHHHHHH
Confidence 346678988973 4569999999999976
No 94
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=85.35 E-value=1.6 Score=19.28 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=13.2
Q ss_pred ccCCCccccHHHHHHHH
Q psy384 55 DLNGDGLITKKEMEEVV 71 (101)
Q Consensus 55 D~d~~G~Is~~el~~~l 71 (101)
|.|+||.|+.-++..+-
T Consensus 1 DvN~DG~vna~D~~~lk 17 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLK 17 (21)
T ss_dssp -TTSSSSSSHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHH
Confidence 78999999998887543
No 95
>PLN02952 phosphoinositide phospholipase C
Probab=84.66 E-value=4.7 Score=32.32 Aligned_cols=51 Identities=8% Similarity=0.099 Sum_probs=40.0
Q ss_pred cccccHHHHHHHHHhhcC--CCHHHHHHHHhhhhccCCCccccHHHHHHHHHHH
Q psy384 23 LVISCMQDFLGILSRVSR--GSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~--~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l 74 (101)
+|.++|++|.+....+.. ..+..++..+|.-|-.++ +.++.++|...|...
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~ 66 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLH 66 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHh
Confidence 589999999887665542 346678999999996544 689999999999873
No 96
>KOG0038|consensus
Probab=82.83 E-value=12 Score=25.07 Aligned_cols=50 Identities=26% Similarity=0.331 Sum_probs=34.8
Q ss_pred ccccHHHHHHHHHhhcCC--CHHH---HHHHHhhhhccCCCccccHHHHHHHHHH
Q psy384 24 VISCMQDFLGILSRVSRG--SVQE---KLQWIFGLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 24 g~I~f~eFl~~l~~~~~~--~~~e---~l~~aF~~fD~d~~G~Is~~el~~~l~~ 73 (101)
+.|.-.+....+..+.++ +.++ ....+-.--|.||||+++..|+.+++..
T Consensus 123 ~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 123 EFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred CcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 577777777766666543 3333 2334455669999999999999988754
No 97
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=82.81 E-value=8 Score=23.15 Aligned_cols=70 Identities=14% Similarity=0.061 Sum_probs=52.3
Q ss_pred hHHHHHHHHHhcchhhhhHhcccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHh
Q psy384 3 DDKLKQFLFLMLPLYNYLLYLVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDM 77 (101)
Q Consensus 3 ~e~~~~~~~~~~p~~~~l~~~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~ 77 (101)
++.+.+=....-|+...+..+|.|+=+++-...+ ..++.++.+..+.. ....|-..++-+.+++..+++.
T Consensus 7 Re~LV~rI~~v~plLD~Ll~n~~it~E~y~~V~a---~~T~qdkmRkLld~--v~akG~~~k~~F~~iL~e~~~~ 76 (85)
T cd08324 7 RELLVTHIRNTQCLVDNLLKNDYFSTEDAEIVCA---CPTQPDKVRKILDL--VQSKGEEVSEYFLYLLQQLADA 76 (85)
T ss_pred HHHHHHHHHhhHHHHHHHhccCCccHHHHHHHHh---CCCCHHHHHHHHHH--HHhcCchHHHHHHHHHHHHHHh
Confidence 4555555566678888888899999999866543 45677899998887 4556667788888888887653
No 98
>KOG4347|consensus
Probab=80.43 E-value=3.5 Score=33.23 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=37.1
Q ss_pred cccHHHHHHHHHhhcCC-CHHHHHHHHhhhhccCCCccccHHHHHHHHHHH
Q psy384 25 ISCMQDFLGILSRVSRG-SVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74 (101)
Q Consensus 25 ~I~f~eFl~~l~~~~~~-~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l 74 (101)
.|+|..|........+. .+..-+...|+.+|.+++|.|+..++..-+..+
T Consensus 534 yi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l 584 (671)
T KOG4347|consen 534 YIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSIL 584 (671)
T ss_pred HHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHH
Confidence 36666666655544443 445567789999999999999999888877765
No 99
>KOG4065|consensus
Probab=79.25 E-value=9.9 Score=24.39 Aligned_cols=46 Identities=22% Similarity=0.233 Sum_probs=31.1
Q ss_pred cccccHHHHHHHHHhhcC----------CCHHHHHHH----HhhhhccCCCccccHHHHH
Q psy384 23 LVISCMQDFLGILSRVSR----------GSVQEKLQW----IFGLYDLNGDGLITKKEME 68 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~----------~~~~e~l~~----aF~~fD~d~~G~Is~~el~ 68 (101)
+|.++=-|.+.++..... -.++.++.. +.+--|.|+||+|...|+.
T Consensus 81 nn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEfl 140 (144)
T KOG4065|consen 81 NNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFL 140 (144)
T ss_pred CCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHH
Confidence 578888888888775532 123444433 4555699999999988764
No 100
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=78.74 E-value=10 Score=21.75 Aligned_cols=45 Identities=22% Similarity=0.440 Sum_probs=31.1
Q ss_pred HHHHHhhhhccCCCccccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHh
Q psy384 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDK 97 (101)
Q Consensus 46 ~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd~ 97 (101)
++..+|+.|-. +.+++|.+++...|.. .-|. +..+.+++++++.+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~---eQ~~---~~~~~~~~~~li~~ 45 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLRE---EQGE---PRLTDEQAKELIEK 45 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHH---TSS----TTSSHHHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHH---Hhcc---ccCcHHHHHHHHHH
Confidence 36778999955 7899999999999876 2332 12346666666654
No 101
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=78.44 E-value=1.8 Score=24.52 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.8
Q ss_pred hhhccCCCccccHHHHHHHHHH
Q psy384 52 GLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 52 ~~fD~d~~G~Is~~el~~~l~~ 73 (101)
++||...+.|||.+++.+++..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 5899999999999999998864
No 102
>KOG4251|consensus
Probab=77.39 E-value=3.4 Score=29.88 Aligned_cols=27 Identities=41% Similarity=0.517 Sum_probs=16.2
Q ss_pred HHHHHHhhhhccCCCccccHHHHHHHH
Q psy384 45 EKLQWIFGLYDLNGDGLITKKEMEEVV 71 (101)
Q Consensus 45 e~l~~aF~~fD~d~~G~Is~~el~~~l 71 (101)
+++...|+--|.|.||+||..|+++.+
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwI 127 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWI 127 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHH
Confidence 455556666666666666666665443
No 103
>KOG0035|consensus
Probab=75.77 E-value=7.1 Score=32.71 Aligned_cols=46 Identities=11% Similarity=0.007 Sum_probs=39.3
Q ss_pred cccccHHHHHHHHHhhc-CCCHHHHHHHHhhhhccCCCccccHHHHHH
Q psy384 23 LVISCMQDFLGILSRVS-RGSVQEKLQWIFGLYDLNGDGLITKKEMEE 69 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~-~~~~~e~l~~aF~~fD~d~~G~Is~~el~~ 69 (101)
.|.++|.+|...|..-. ..+.+.++..+|+.+=++.. +|..+||..
T Consensus 802 ~~qv~~~e~~ddl~R~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 802 QGQVQLLEFEDDLEREYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred ccceeHHHHHhHhhhhhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 48999999999998665 46788999999999977777 899999886
No 104
>KOG0046|consensus
Probab=75.34 E-value=5.2 Score=31.73 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=14.2
Q ss_pred HHHHhhhhccCCCccccHHHHHHHHHHH
Q psy384 47 LQWIFGLYDLNGDGLITKKEMEEVVTSI 74 (101)
Q Consensus 47 l~~aF~~fD~d~~G~Is~~el~~~l~~l 74 (101)
++..|...| |++|+|+..|+..++...
T Consensus 21 l~~kF~~~d-~~~G~v~~~~l~~~f~k~ 47 (627)
T KOG0046|consen 21 LKEKFNKLD-DQKGYVTVYELPDAFKKA 47 (627)
T ss_pred HHHHHHhhc-CCCCeeehHHhHHHHHHh
Confidence 444555555 555555555555555443
No 105
>KOG4578|consensus
Probab=71.82 E-value=4.9 Score=30.15 Aligned_cols=51 Identities=14% Similarity=0.050 Sum_probs=40.1
Q ss_pred cccccHHHHHHHHHhhcC-CCHHHHHHHHhhhhccCCCccccHHHHHHHHHH
Q psy384 23 LVISCMQDFLGILSRVSR-GSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~-~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~ 73 (101)
++.|+-.|+-..-..+.. ..+....+..|+..|.|+|-.||.+|++..+..
T Consensus 347 nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 347 NNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred cCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 367887787776665543 456778888999999999999999999877754
No 106
>KOG2562|consensus
Probab=71.45 E-value=4.1 Score=31.64 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=17.8
Q ss_pred hhhhccCCCccccHHHHHHHH
Q psy384 51 FGLYDLNGDGLITKKEMEEVV 71 (101)
Q Consensus 51 F~~fD~d~~G~Is~~el~~~l 71 (101)
|-..|.|++|.|++++|...-
T Consensus 284 FweLD~Dhd~lidk~~L~ry~ 304 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYG 304 (493)
T ss_pred HhhhccccccccCHHHHHHHh
Confidence 666699999999999998654
No 107
>KOG0046|consensus
Probab=69.27 E-value=33 Score=27.42 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=44.2
Q ss_pred cccccHHHHHHHHHhhcC---CCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHH
Q psy384 23 LVISCMQDFLGILSRVSR---GSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIY 75 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~---~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~ 75 (101)
+|.|+..+....+..... .-.+++++.+-.-.+.|.+|.|+.+|+..+.-.+.
T Consensus 32 ~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 32 KGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred CCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 599999999998876542 24678899999999999999999999998776654
No 108
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=68.48 E-value=10 Score=25.69 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=27.3
Q ss_pred HHHHHHHhhhhccCCCccccHHHHHHHHHH
Q psy384 44 QEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 44 ~e~l~~aF~~fD~d~~G~Is~~el~~~l~~ 73 (101)
.++....|..|++.+.+.+|..|+..+++.
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 578999999999999999999999998875
No 109
>KOG3866|consensus
Probab=67.77 E-value=11 Score=28.25 Aligned_cols=29 Identities=34% Similarity=0.654 Sum_probs=24.1
Q ss_pred HhhhhccCCCccccHHHHHHHHHHHHHhh
Q psy384 50 IFGLYDLNGDGLITKKEMEEVVTSIYDML 78 (101)
Q Consensus 50 aF~~fD~d~~G~Is~~el~~~l~~l~~~~ 78 (101)
.|.+.|.|+||++...||..+.+.-...+
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKv 277 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKV 277 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHh
Confidence 68899999999999999998887654433
No 110
>KOG1707|consensus
Probab=65.06 E-value=8.2 Score=30.98 Aligned_cols=30 Identities=20% Similarity=0.459 Sum_probs=26.6
Q ss_pred HHHHHHhhhhccCCCccccHHHHHHHHHHH
Q psy384 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74 (101)
Q Consensus 45 e~l~~aF~~fD~d~~G~Is~~el~~~l~~l 74 (101)
+.+...|..||.|+||.++..|+..+....
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~ 344 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTA 344 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhC
Confidence 567789999999999999999999888764
No 111
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=63.24 E-value=6 Score=24.68 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.6
Q ss_pred hhhccCCCccccHHHHHHHHHH
Q psy384 52 GLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 52 ~~fD~d~~G~Is~~el~~~l~~ 73 (101)
++||.+.+-|||.++++.++..
T Consensus 10 RLYDT~tS~YITLedi~~lV~~ 31 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVRE 31 (107)
T ss_pred cccCCCccceeeHHHHHHHHHC
Confidence 5899999999999999998864
No 112
>KOG3555|consensus
Probab=62.87 E-value=6.7 Score=29.62 Aligned_cols=27 Identities=30% Similarity=0.631 Sum_probs=24.2
Q ss_pred HHHHHHHhhhhccCCCccccHHHHHHH
Q psy384 44 QEKLQWIFGLYDLNGDGLITKKEMEEV 70 (101)
Q Consensus 44 ~e~l~~aF~~fD~d~~G~Is~~el~~~ 70 (101)
...+-|.|.-+|.|.||.++..||+.+
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I 275 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAI 275 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhh
Confidence 467899999999999999999999865
No 113
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=62.85 E-value=24 Score=19.50 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=23.2
Q ss_pred CCHHHHHHHHhhhh--ccCCCccccHHHHHHHHHHHH
Q psy384 41 GSVQEKLQWIFGLY--DLNGDGLITKKEMEEVVTSIY 75 (101)
Q Consensus 41 ~~~~e~l~~aF~~f--D~d~~G~Is~~el~~~l~~l~ 75 (101)
.-+-++++...++| +. +...+|.+||+.++..+-
T Consensus 11 sl~l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~lv 46 (60)
T PF08672_consen 11 SLPLDRIHSMLKMFPKDP-GGYDISLEELQEFLDRLV 46 (60)
T ss_dssp SEEHHHHHHHHHHH-GGG---TT--HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccCCC-CCCCCCHHHHHHHHHHHH
Confidence 34667888888888 55 334589999999998764
No 114
>KOG4251|consensus
Probab=57.29 E-value=24 Score=25.61 Aligned_cols=48 Identities=25% Similarity=0.432 Sum_probs=32.8
Q ss_pred cccHHHHHHHHHhhc---CC-C-----HHHHHHHHhhhhccCCCccccHHHHHHHHH
Q psy384 25 ISCMQDFLGILSRVS---RG-S-----VQEKLQWIFGLYDLNGDGLITKKEMEEVVT 72 (101)
Q Consensus 25 ~I~f~eFl~~l~~~~---~~-~-----~~e~l~~aF~~fD~d~~G~Is~~el~~~l~ 72 (101)
.++-.+|+....-.. .+ + .+.+.+..=.+.|.|.||.+|.+||..++.
T Consensus 252 qlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~d 308 (362)
T KOG4251|consen 252 QLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVD 308 (362)
T ss_pred eecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcC
Confidence 678888876533211 11 1 234666666778999999999999987754
No 115
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=56.99 E-value=7.8 Score=26.26 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=21.9
Q ss_pred HHHHhhhhccCCCccccHHHHHHHHHHH
Q psy384 47 LQWIFGLYDLNGDGLITKKEMEEVVTSI 74 (101)
Q Consensus 47 l~~aF~~fD~d~~G~Is~~el~~~l~~l 74 (101)
|+.--..||+|+||.|..-|-..-++++
T Consensus 9 LQqHvaFFDrd~DGiI~P~dTy~GFraL 36 (174)
T PF05042_consen 9 LQQHVAFFDRDKDGIIYPWDTYQGFRAL 36 (174)
T ss_pred HhhhhceeCCCCCeeECHHHHHHHHHHh
Confidence 4444556999999999999987777664
No 116
>KOG2557|consensus
Probab=56.93 E-value=32 Score=26.29 Aligned_cols=52 Identities=12% Similarity=0.385 Sum_probs=44.8
Q ss_pred cccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHH
Q psy384 25 ISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYD 76 (101)
Q Consensus 25 ~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~ 76 (101)
.++++.+....+....++..++...+....|.+++|..++..+.+.+....+
T Consensus 74 ~~~l~k~~~~~~~~~~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~vlk 125 (427)
T KOG2557|consen 74 KMTLEKLVIAKATYEKGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVVLK 125 (427)
T ss_pred cchHHHHhhHHhhhccCcccHHHHHHHHHHhhccccccchhHHHHHHHHHhh
Confidence 6888888877777777877888899999999999999999999999988653
No 117
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=55.57 E-value=28 Score=17.92 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=20.6
Q ss_pred HHHHHhhhhc-c-CCCccccHHHHHHHHHH
Q psy384 46 KLQWIFGLYD-L-NGDGLITKKEMEEVVTS 73 (101)
Q Consensus 46 ~l~~aF~~fD-~-d~~G~Is~~el~~~l~~ 73 (101)
.+..+|.-|- + .....+++.||+.+|..
T Consensus 7 ~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 7 TIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 4566788884 2 33557999999999875
No 118
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=55.50 E-value=13 Score=25.66 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=22.8
Q ss_pred hhhccCCCccccHHHHHHHHHHHHHhh
Q psy384 52 GLYDLNGDGLITKKEMEEVVTSIYDML 78 (101)
Q Consensus 52 ~~fD~d~~G~Is~~el~~~l~~l~~~~ 78 (101)
.-||.|++|.++.+|+..+.......+
T Consensus 57 ~~~D~~~dg~~~~~el~~l~~~~~~~l 83 (212)
T PF06226_consen 57 EGLDKDGDGKLDPEELAALAKEIFDNL 83 (212)
T ss_pred HhhhhcccCCCCHHHHHHHHHHHHhhh
Confidence 368999999999999999988776544
No 119
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=55.09 E-value=47 Score=20.31 Aligned_cols=67 Identities=9% Similarity=0.129 Sum_probs=43.9
Q ss_pred cccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHhh
Q psy384 25 ISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKI 98 (101)
Q Consensus 25 ~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd~i 98 (101)
.|-=.+|...++.+.+.-+++++..+=..+-.++..-++..++...+.. .++.-.+ .++++++..++
T Consensus 19 GvP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~---vt~~~P~----~~di~RV~~~L 85 (96)
T PF11829_consen 19 GVPPTDYVPLLALLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITR---VTDELPT----PEDIERVRARL 85 (96)
T ss_dssp -B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHH---HCSS-S-----HHHHHHHHHHH
T ss_pred CCCCCccHHHHHHhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH---HHcCCcC----HHHHHHHHHHH
Confidence 4777888888888877667777777767776677776788888877776 4554333 66677666554
No 120
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=54.52 E-value=35 Score=26.24 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=26.6
Q ss_pred cccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHhhccC
Q psy384 61 LITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFSE 101 (101)
Q Consensus 61 ~Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd~if~~ 101 (101)
-+-..+|+..+..+.+++|... .+++.|+||+.
T Consensus 405 el~a~~l~~a~~~l~~itG~~~--------~ediLd~iFs~ 437 (442)
T TIGR00450 405 DMLVFHLREAINCLGQVTGEVV--------TEDVLDEIFSN 437 (442)
T ss_pred HHHHHHHHHHHHHHHHHhCCCC--------cHHHHHHHHhc
Confidence 4677899999999999999653 37889999863
No 121
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=53.05 E-value=27 Score=24.39 Aligned_cols=57 Identities=19% Similarity=0.192 Sum_probs=39.1
Q ss_pred hcccccHHHHHHHHHhhcC-C-----------CHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHhhCC
Q psy384 22 YLVISCMQDFLGILSRVSR-G-----------SVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGR 80 (101)
Q Consensus 22 ~~g~I~f~eFl~~l~~~~~-~-----------~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g~ 80 (101)
..|.++|..++.-|+.... + +..++|...-+.||+|.+|.|-. ...+-+.+|+..|.
T Consensus 174 d~geldFn~iL~~Mk~~~~Egk~d~~~iTKM~~Aa~kLI~F~qSfDPdSte~I~I--~~d~s~~iydlfgv 242 (246)
T PF10897_consen 174 DKGELDFNDILDKMKLQVNEGKLDPDIITKMRDAAPKLIKFVQSFDPDSTEPIKI--GKDMSKLIYDLFGV 242 (246)
T ss_pred hcCCCcHHHHHHHHHHhhccCCcCcHHHHHHHHhhHHHHHHHHhcCCCCcCceee--ecchHHHHHHHhcc
Confidence 3589999999999997753 1 23356666678899999998753 12233455666664
No 122
>KOG1707|consensus
Probab=51.69 E-value=32 Score=27.81 Aligned_cols=30 Identities=23% Similarity=0.478 Sum_probs=25.5
Q ss_pred HHHHHHhhhhccCCCccccHHHHHHHHHHH
Q psy384 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74 (101)
Q Consensus 45 e~l~~aF~~fD~d~~G~Is~~el~~~l~~l 74 (101)
..+..+|++.|.|+||.++-.|+-..=+.+
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~C 224 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKC 224 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHh
Confidence 356778999999999999999998876654
No 123
>KOG2243|consensus
Probab=51.68 E-value=11 Score=34.04 Aligned_cols=24 Identities=33% Similarity=0.711 Sum_probs=21.7
Q ss_pred HhhhhccCCCccccHHHHHHHHHH
Q psy384 50 IFGLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 50 aF~~fD~d~~G~Is~~el~~~l~~ 73 (101)
.|+-||+||.|.||+.++...|..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~ 4085 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG 4085 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc
Confidence 688999999999999999988764
No 124
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=47.81 E-value=25 Score=16.91 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=13.0
Q ss_pred CccccHHHHHHHHHHHHHhh
Q psy384 59 DGLITKKEMEEVVTSIYDML 78 (101)
Q Consensus 59 ~G~Is~~el~~~l~~l~~~~ 78 (101)
.|.|+.+++..+........
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~ 21 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFY 21 (33)
T ss_pred CceecHHHHHHHHHHHHHHH
Confidence 56777777777776654433
No 125
>KOG3442|consensus
Probab=47.16 E-value=42 Score=21.63 Aligned_cols=33 Identities=15% Similarity=0.497 Sum_probs=24.2
Q ss_pred CccccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHhhcc
Q psy384 59 DGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFS 100 (101)
Q Consensus 59 ~G~Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd~if~ 100 (101)
.|.||.+|-.++|. +.++...+.++.+-+++|+
T Consensus 53 ~~~iTlqEa~qILn---------V~~~ln~eei~k~yehLFe 85 (132)
T KOG3442|consen 53 NGKITLQEAQQILN---------VKEPLNREEIEKRYEHLFE 85 (132)
T ss_pred cccccHHHHhhHhC---------CCCCCCHHHHHHHHHHHHh
Confidence 47799888887763 2235667888998888885
No 126
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=46.93 E-value=36 Score=19.33 Aligned_cols=38 Identities=21% Similarity=0.428 Sum_probs=25.3
Q ss_pred ccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHhhcc
Q psy384 62 ITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFS 100 (101)
Q Consensus 62 Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd~if~ 100 (101)
|+...++.+++.++++-|.+- ..+.++.-.-++|.||.
T Consensus 23 ~~~~~v~~vl~~LL~lY~~nW-~lIEed~Y~~L~dai~e 60 (65)
T PF10440_consen 23 FSKKQVRPVLKNLLKLYDGNW-ELIEEDNYRVLADAIFE 60 (65)
T ss_pred CCHHHHHHHHHHHHHHHcCCc-hhhhcccHHHHHHHHHH
Confidence 777888888888888887662 23334444556777664
No 127
>PRK12606 GTP cyclohydrolase I; Reviewed
Probab=46.92 E-value=63 Score=22.39 Aligned_cols=39 Identities=13% Similarity=0.105 Sum_probs=22.1
Q ss_pred CCCccccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHH
Q psy384 57 NGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHV 95 (101)
Q Consensus 57 d~~G~Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~v 95 (101)
++.|.++.+++...+..+...+|.+++-.--.++|+.++
T Consensus 12 ~~~~~~d~~~~~~av~~iL~alGeD~~regL~~TP~RVa 50 (201)
T PRK12606 12 RRGRRFDPPALEAAVRELLEALGEDPDREGLLDTPQRVA 50 (201)
T ss_pred ccCCccCHHHHHHHHHHHHHHhCCCCCCcchhhHHHHHH
Confidence 344556666666677777767776654333334454443
No 128
>PLN02223 phosphoinositide phospholipase C
Probab=46.71 E-value=74 Score=25.41 Aligned_cols=55 Identities=5% Similarity=-0.040 Sum_probs=40.5
Q ss_pred CHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHhhcc
Q psy384 42 SVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFS 100 (101)
Q Consensus 42 ~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd~if~ 100 (101)
.+.+.++.+|..|- ++.|..+.+.|..++.-+.+.-|.. ....++.+.+++++++
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~---~~~~~~a~~i~~~~~~ 67 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDED---GAGLNAAEKIAAELKR 67 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccc---cCCHHHHHHHHHHHHh
Confidence 45678899999994 7889999999999996655555532 2335677888887764
No 129
>PF14164 YqzH: YqzH-like protein
Probab=45.61 E-value=56 Score=18.49 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=30.9
Q ss_pred HHHHHHhhhhccC-CCccccHHHHHHHHHHHHHhhCCCC
Q psy384 45 EKLQWIFGLYDLN-GDGLITKKEMEEVVTSIYDMLGRNI 82 (101)
Q Consensus 45 e~l~~aF~~fD~d-~~G~Is~~el~~~l~~l~~~~g~~~ 82 (101)
..++.+|+-|..| ..-.+|..|.+.+...+....++..
T Consensus 8 Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i~~~~~~~~ 46 (64)
T PF14164_consen 8 KMIINCLRQYGYDVECMPLSDEEWEELCKHIQERKNEEP 46 (64)
T ss_pred HHHHHHHHHhCCcccCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 4577899999888 6778999999999999877776543
No 130
>KOG4004|consensus
Probab=44.35 E-value=16 Score=25.65 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=22.8
Q ss_pred HHHHHHHHhhhhccCCCccccHHHHHHH
Q psy384 43 VQEKLQWIFGLYDLNGDGLITKKEMEEV 70 (101)
Q Consensus 43 ~~e~l~~aF~~fD~d~~G~Is~~el~~~ 70 (101)
.+......|.-.|.|+||+|+.+|-...
T Consensus 220 me~c~~~f~e~cd~~nd~~ial~ew~~c 247 (259)
T KOG4004|consen 220 MEHCTTRFFETCDLDNDKYIALDEWAGC 247 (259)
T ss_pred HHhhchhhhhcccCCCCCceeHHHhhcc
Confidence 4566778899999999999998776543
No 131
>KOG1955|consensus
Probab=42.37 E-value=27 Score=27.86 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=27.5
Q ss_pred HHHHHHHHhhhhccCCCccccHHHHHHHHHHH
Q psy384 43 VQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74 (101)
Q Consensus 43 ~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l 74 (101)
+-++|.-++.+.|.|.||-++..|+...+.-+
T Consensus 263 pi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 263 PIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred chHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 45678889999999999999999998877654
No 132
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=42.12 E-value=32 Score=19.85 Aligned_cols=10 Identities=10% Similarity=0.431 Sum_probs=4.5
Q ss_pred ccHHHHHHHH
Q psy384 62 ITKKEMEEVV 71 (101)
Q Consensus 62 Is~~el~~~l 71 (101)
++.+|+..++
T Consensus 46 ~~~eeiq~LC 55 (71)
T PF04282_consen 46 MPVEEIQKLC 55 (71)
T ss_pred CCHHHHHHHh
Confidence 4444444433
No 133
>PF14297 DUF4373: Domain of unknown function (DUF4373)
Probab=41.93 E-value=70 Score=18.56 Aligned_cols=42 Identities=21% Similarity=0.346 Sum_probs=23.9
Q ss_pred cccHHHHHHHHHhhcCCCHH--HHHHHHhhhhccCCCccccHHHH
Q psy384 25 ISCMQDFLGILSRVSRGSVQ--EKLQWIFGLYDLNGDGLITKKEM 67 (101)
Q Consensus 25 ~I~f~eFl~~l~~~~~~~~~--e~l~~aF~~fD~d~~G~Is~~el 67 (101)
.+.+++ +..++.....+.+ +++..-|.+||.+..|.+|...+
T Consensus 43 ~~~~~~-~~~~a~~~~~~~~~v~~II~~~~LF~~~~~~iltS~~I 86 (87)
T PF14297_consen 43 YLWWDK-LFLIARKLGVSEEYVEEIINEYGLFDIEEYGILTSEGI 86 (87)
T ss_pred EeeHHH-HHHHHHHHCcCHHHHHHHHHHhCCcccCCCcEEechhh
Confidence 466776 4555544433322 33334677888887776766543
No 134
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=40.20 E-value=77 Score=24.78 Aligned_cols=49 Identities=16% Similarity=0.218 Sum_probs=36.1
Q ss_pred HHHHHHhhhhccCCCccccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHhhccC
Q psy384 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFSE 101 (101)
Q Consensus 45 e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd~if~~ 101 (101)
+.+..+..-++.....-+-..||+.....+.+.+|.. ..++++++||++
T Consensus 401 ~~l~~a~~~~~~~~~~dl~a~dLr~A~~~LgeItG~~--------~~edlLd~IFs~ 449 (454)
T COG0486 401 EHLEDALQQLELGQPLDLLAEDLRLAQEALGEITGEF--------VSEDLLDEIFSN 449 (454)
T ss_pred HHHHHHHhhhhccCChhhhHHHHHHHHHHHHHhhCCC--------chHHHHHHHHHh
Confidence 3455555655543366788899999999999999954 457889999863
No 135
>PF07500 TFIIS_M: Transcription factor S-II (TFIIS), central domain; InterPro: IPR003618 Transcription factor S-II (TFIIS) is a eukaryotic protein which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites. TFIIS shows DNA-binding activity only in the presence of RNA polymerase II []. It is widely distributed being found in mammals, Drosophila, yeast and in the archaebacteria Sulfolobus acidocaldarius []. S-II proteins have a relatively conserved C-terminal region but variable N-terminal region, and some members of this family are expressed in a tissue-specific manner [, ]. TFIIS is a modular factor that comprises an N-terminal domain I, a central domain II, and a C-terminal domain III []. The weakly conserved domain I forms a four-helix bundle and is not required for TFIIS activity. Domain II forms a three-helix bundle, and domain III adopts a zinc-ribbon fold with a thin protruding beta-hairpin. Domain II and the linker between domains II and III are required for Pol II binding, whereas domain III is essential for stimulation of RNA cleavage. TFIIS extends from the polymerase surface via a pore to the internal active site, spanning a distance of 100 Angstroms. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. This domain is found in the central region of transcription elongation factor S-II and in several hypothetical proteins.; GO: 0006351 transcription, DNA-dependent; PDB: 3PO3_S 1ENW_A 3GTM_S 1Y1V_S 3NDQ_A 2DME_A.
Probab=38.28 E-value=30 Score=21.28 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=24.0
Q ss_pred chHHHHHHHHHhc----c-hhhhhHhcccccHHHHHHHHH
Q psy384 2 YDDKLKQFLFLML----P-LYNYLLYLVISCMQDFLGILS 36 (101)
Q Consensus 2 ~~e~~~~~~~~~~----p-~~~~l~~~g~I~f~eFl~~l~ 36 (101)
|++.++.+++++. | +..+++ +|.|+..+|+.+-.
T Consensus 52 Y~~k~Rsl~~NLkd~~N~~L~~~il-~g~i~p~~lv~ms~ 90 (115)
T PF07500_consen 52 YKQKFRSLMFNLKDPKNPDLRRRIL-SGEISPEELVTMSP 90 (115)
T ss_dssp HHHHHHHHHHHHCSSTTCCHHHHHH-HSSSTTCHHHHCTT
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHH-cCCCCHHHHhcCCH
Confidence 7888888988885 2 223443 49999999877633
No 136
>PF03986 Autophagy_N: Autophagocytosis associated protein (Atg3), N-terminal domain ; InterPro: IPR007134 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes. Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the lysosome/vacuole. Atg3 is a ubiquitin like modifier that is topologically similar to the canonical E2 enzyme []. It catalyses the conjugation of Atg8 and phosphatidylethanolamine []. This domain is the N-terminal of Atg3 while the C-terminal is represented by IPR007135 from INTERPRO.; PDB: 3T7G_C 2DYT_A.
Probab=38.02 E-value=22 Score=23.33 Aligned_cols=34 Identities=9% Similarity=0.144 Sum_probs=9.2
Q ss_pred CchHHHHHHHHHhcchh--hhhHhcccccHHHHHHH
Q psy384 1 MYDDKLKQFLFLMLPLY--NYLLYLVISCMQDFLGI 34 (101)
Q Consensus 1 ~~~e~~~~~~~~~~p~~--~~l~~~g~I~f~eFl~~ 34 (101)
|.+..+..+.-.+.|.. +.....|.|+=+||+.+
T Consensus 1 ml~s~~~~~~e~ltPv~~~S~F~etG~iTPeEFV~A 36 (145)
T PF03986_consen 1 MLRSTFSSVREYLTPVLHESKFKETGVITPEEFVAA 36 (145)
T ss_dssp ---------------------HHHHS---HHHHHHH
T ss_pred ChHHHHHHHHHHhcCCCCcccccccceeCHHHHHHh
Confidence 67777888888888866 33334699999999887
No 137
>TIGR01592 holin_SPP1 holin, SPP1 family. This model represents one of more than 30 families of phage proteins, all lacking detectable homology with each other, known or believed to act as holins. Holins act in cell lysis by bacteriophage. Members of this family are found in phage PBSX and phage SPP1, among others.
Probab=37.75 E-value=85 Score=18.29 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=19.6
Q ss_pred HHHHHHHhhCCCCCCCCChhhHHHHHHhhc
Q psy384 70 VVTSIYDMLGRNIEPQIDDTTVKAHVDKIF 99 (101)
Q Consensus 70 ~l~~l~~~~g~~~~~~~~~~~~~~~vd~if 99 (101)
++..+..+.|..+ .|++++++.+.++-+|
T Consensus 16 lvNq~L~~~G~~p-ipide~~i~~~v~~v~ 44 (75)
T TIGR01592 16 LVNQFLAMKGISP-IPVDEEGISTVVDAVF 44 (75)
T ss_pred HHHHHHHHCCCCC-CCccHHHHHHHHHHHH
Confidence 3344456678765 4678888888887664
No 138
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=37.24 E-value=40 Score=21.15 Aligned_cols=24 Identities=17% Similarity=0.465 Sum_probs=19.9
Q ss_pred cCCCccccHHHHHHHHHHHHHhhC
Q psy384 56 LNGDGLITKKEMEEVVTSIYDMLG 79 (101)
Q Consensus 56 ~d~~G~Is~~el~~~l~~l~~~~g 79 (101)
.|-+|.|+.++|++++.++..+..
T Consensus 5 iDtSGSis~~~l~~fl~ev~~i~~ 28 (126)
T PF09967_consen 5 IDTSGSISDEELRRFLSEVAGILR 28 (126)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHH
Confidence 367899999999999998876554
No 139
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=37.04 E-value=87 Score=18.20 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcchhhhhHhcccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHH
Q psy384 4 DKLKQFLFLMLPLYNYLLYLVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 4 e~~~~~~~~~~p~~~~l~~~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~ 73 (101)
.+|.+=.....|+...+...|.|+-+++-.+.+ .++..++.+..+..... .|.....-+...|+.
T Consensus 8 ~~Li~~v~~v~~ilD~L~~~~Vit~e~~~~I~a---~~T~~~kar~Lld~l~~--kG~~A~~~F~~~L~e 72 (82)
T cd08330 8 EALIARVTNVDPILDKLHGKKVITQEQYSEVRA---EKTNQEKMRKLFSFVRS--WGASCKDIFYQILRE 72 (82)
T ss_pred HHHHHHHhhHHHHHHHHHHCCCCCHHHHHHHHc---CCCcHHHHHHHHHHHHc--cCHHHHHHHHHHHHH
Confidence 344444445567777777789999999877655 34667888988888755 455666667766654
No 140
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=36.81 E-value=90 Score=18.34 Aligned_cols=32 Identities=9% Similarity=0.292 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHhh
Q psy384 63 TKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKI 98 (101)
Q Consensus 63 s~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd~i 98 (101)
+...+|++++..-.+.|..++ +++.+++|.-|
T Consensus 29 dE~~vR~lIk~vs~~an~~Vs----~~~ed~IV~~I 60 (79)
T PF14069_consen 29 DEKKVRQLIKQVSQIANKPVS----KEQEDQIVQAI 60 (79)
T ss_pred cHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHH
Confidence 456677788877777776554 66666776655
No 141
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=36.71 E-value=29 Score=20.71 Aligned_cols=39 Identities=28% Similarity=0.432 Sum_probs=25.7
Q ss_pred ccccHHHHHHHHHhhcC---------------C-----CHHHHHHHHhhhhccCCCccc
Q psy384 24 VISCMQDFLGILSRVSR---------------G-----SVQEKLQWIFGLYDLNGDGLI 62 (101)
Q Consensus 24 g~I~f~eFl~~l~~~~~---------------~-----~~~e~l~~aF~~fD~d~~G~I 62 (101)
..++|+++..-+...++ | ++.++|..||++|-.+++..+
T Consensus 18 ~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~n~~~~l 76 (83)
T cd06404 18 PSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYELNKDSEL 76 (83)
T ss_pred CCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHhcCcccE
Confidence 46788888877665543 1 245677778888777766543
No 142
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=36.33 E-value=92 Score=23.93 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=26.2
Q ss_pred cccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHhhccC
Q psy384 61 LITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFSE 101 (101)
Q Consensus 61 ~Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd~if~~ 101 (101)
-+-.++|+..+..+..++|.. ..+++.|+||+.
T Consensus 412 ~~~a~~l~~a~~~l~~i~G~~--------~~e~iLd~iF~~ 444 (449)
T PRK05291 412 ELLAEDLRLALEALGEITGEV--------TSEDLLDRIFSS 444 (449)
T ss_pred HHHHHHHHHHHHHHHHHhCCC--------ChHHHHHHHHHh
Confidence 366789999999999999964 347888888863
No 143
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=35.47 E-value=89 Score=17.86 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=17.1
Q ss_pred CccccHHHHHHHHHHHHHhhC
Q psy384 59 DGLITKKEMEEVVTSIYDMLG 79 (101)
Q Consensus 59 ~G~Is~~el~~~l~~l~~~~g 79 (101)
.|.+|+.-|..+++.+|+..+
T Consensus 47 rgrvskavlvkmlrkly~~tk 67 (79)
T PF09061_consen 47 RGRVSKAVLVKMLRKLYEATK 67 (79)
T ss_dssp HS-EEHHHHHHHHHHHHHHH-
T ss_pred cCcchHHHHHHHHHHHHHhhc
Confidence 488999999999999998886
No 144
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=33.99 E-value=29 Score=22.02 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=18.1
Q ss_pred chHHHHHHHHHhcchhhhhHhcccccHHHHHHHHH
Q psy384 2 YDDKLKQFLFLMLPLYNYLLYLVISCMQDFLGILS 36 (101)
Q Consensus 2 ~~e~~~~~~~~~~p~~~~l~~~g~I~f~eFl~~l~ 36 (101)
.+|||..+...+ |+.. .|.+.|.||+.-++
T Consensus 5 tDeQFdrLW~e~-Pvn~----~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 5 TDEQFDRLWNEM-PVNA----KGRLKYQEFLSKFS 34 (118)
T ss_dssp -HHHHHHHHTTS--B-T----TS-EEHHHHHHHT-
T ss_pred cHHHhhhhhhhC-cCCc----cCCEeHHHHHHHcc
Confidence 367777776544 2221 38999999998776
No 145
>KOG1029|consensus
Probab=33.26 E-value=41 Score=28.36 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=29.9
Q ss_pred CHHHHHHHHhhhhccCCCccccHHHHHHHHHHHH-HhhCCC
Q psy384 42 SVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIY-DMLGRN 81 (101)
Q Consensus 42 ~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~-~~~g~~ 81 (101)
-+...|.-++.+-|.|+||.++.+|+...|.-+- .+.|..
T Consensus 226 Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~liema~sGq~ 266 (1118)
T KOG1029|consen 226 LPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIEMAKSGQP 266 (1118)
T ss_pred CchhhHhhheeeeccCCCCcccHHHHHHHHHHHHHHhcCCC
Confidence 3455677788999999999999999997776552 233544
No 146
>PF14000 Packaging_FI: DNA packaging protein FI
Probab=32.70 E-value=1.3e+02 Score=19.28 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHH
Q psy384 63 TKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVD 96 (101)
Q Consensus 63 s~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd 96 (101)
+++|+..=|..|...+|..+..|-+-.+|.++|-
T Consensus 1 tKee~l~RL~eLa~~LGRE~d~SGSaAeiaqRVA 34 (125)
T PF14000_consen 1 TKEENLARLRELAAQLGREPDMSGSAAEIAQRVA 34 (125)
T ss_pred ChHHHHHHHHHHHHHhCcCCCccccHHHHHHHHH
Confidence 3556666667777777777666666666666653
No 147
>PRK13696 hypothetical protein; Provisional
Probab=32.60 E-value=67 Score=18.06 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=18.5
Q ss_pred ccccHHHHHHHHHhhcCCCHHHHHHHHhhhh
Q psy384 24 VISCMQDFLGILSRVSRGSVQEKLQWIFGLY 54 (101)
Q Consensus 24 g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~f 54 (101)
|..+|+|++.-+. -........+..+|..+
T Consensus 21 ~~~SFSevi~~L~-~~~~~~~~~l~~~~Gil 50 (62)
T PRK13696 21 GDKSFSEVIRELI-EKKKGNLDKLMKAFGIL 50 (62)
T ss_pred CCCCHHHHHHHHH-HHhhccHHHHHHHHCCC
Confidence 6789999998877 22222334555565443
No 148
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=32.48 E-value=81 Score=19.20 Aligned_cols=17 Identities=41% Similarity=0.802 Sum_probs=6.0
Q ss_pred ccccHHHHHHHHHHHHH
Q psy384 60 GLITKKEMEEVVTSIYD 76 (101)
Q Consensus 60 G~Is~~el~~~l~~l~~ 76 (101)
+.|+.+++..++..++.
T Consensus 46 ~~v~~~~~~~Vl~EF~~ 62 (108)
T PF14842_consen 46 GSVSPEEVEEVLEEFYD 62 (108)
T ss_dssp ----HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 34444444444444443
No 149
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=32.32 E-value=1.2e+02 Score=18.20 Aligned_cols=56 Identities=7% Similarity=0.092 Sum_probs=40.0
Q ss_pred ccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHhhC
Q psy384 24 VISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLG 79 (101)
Q Consensus 24 g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g 79 (101)
..|+..|++......--.-..+.+.....+.-.+.=.-...++-..+++.+-...+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~ 68 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITS 68 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 67999999887665543334455666777776666667788888888888776654
No 150
>PF07868 DUF1655: Protein of unknown function (DUF1655); InterPro: IPR012450 This entry is represented by Bacteriophage bIL310, Orf15. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The proteins in this family have unknown function and are found in some Lactococcus lactis prophages [].
Probab=32.29 E-value=78 Score=17.01 Aligned_cols=34 Identities=12% Similarity=0.125 Sum_probs=19.3
Q ss_pred cccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHhhcc
Q psy384 61 LITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFS 100 (101)
Q Consensus 61 ~Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd~if~ 100 (101)
+|+.++..-.++.+.+....- --++++.++++|.
T Consensus 1 ~I~~D~~~~~~~~~LkAKaRH------~I~~~~~~~rLFD 34 (55)
T PF07868_consen 1 YILDDSIAFEFMDCLKAKARH------FIQLNEYVYRLFD 34 (55)
T ss_pred CcchHHHHHHHHHHHHHhhhh------eEeHHHHHHHhcC
Confidence 355666666666655433221 1256788888874
No 151
>PF14129 DUF4296: Domain of unknown function (DUF4296)
Probab=30.47 E-value=79 Score=18.44 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=15.2
Q ss_pred CccccHHHHHHHHHHHHHhh
Q psy384 59 DGLITKKEMEEVVTSIYDML 78 (101)
Q Consensus 59 ~G~Is~~el~~~l~~l~~~~ 78 (101)
+|.|+.++|..+|..+.-.-
T Consensus 2 ~~~I~~~kM~~IL~D~~l~~ 21 (87)
T PF14129_consen 2 DNLIPEDKMEDILYDLHLAE 21 (87)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 57888999998888875333
No 152
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=29.60 E-value=56 Score=18.18 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=15.9
Q ss_pred HHHhhhhccCCCccccHHHHHHHH
Q psy384 48 QWIFGLYDLNGDGLITKKEMEEVV 71 (101)
Q Consensus 48 ~~aF~~fD~d~~G~Is~~el~~~l 71 (101)
..||.+| .+.+|.|+..|+...|
T Consensus 10 dkA~e~y-~~~~g~i~lkdIA~~L 32 (60)
T PF10668_consen 10 DKAFEIY-KESNGKIKLKDIAEKL 32 (60)
T ss_pred HHHHHHH-HHhCCCccHHHHHHHH
Confidence 4578877 6788899966665433
No 153
>PF12283 Protein_K: Bacteriophage protein K; InterPro: IPR020962 This family of proteins is found in the microviridae (isometric ssDNA phages) and are approximately 60 amino acids in length. The function of these proteins are unknown. In phi X174 site-directed mutagenesis of gene K produces small plaques on su- hosts. The mutant phage has an identical latent period, but a more reduced burst size than that of the wild-type phi X174. The reduced burst size in the gene K mutant suggests that the gene K protein, although not essential, has a role in increasing infectivity by increasing the burst size three to six fold [].
Probab=29.24 E-value=1e+02 Score=16.62 Aligned_cols=37 Identities=24% Similarity=0.539 Sum_probs=26.9
Q ss_pred HhhhhccCCCccc-cHHHHHHHHHHHHHhhCCCCCCCC
Q psy384 50 IFGLYDLNGDGLI-TKKEMEEVVTSIYDMLGRNIEPQI 86 (101)
Q Consensus 50 aF~~fD~d~~G~I-s~~el~~~l~~l~~~~g~~~~~~~ 86 (101)
..-.|+.|.+|.+ ..++++..++.+-..+-.+++|+-
T Consensus 13 lll~yelnrsgllvene~i~~~l~~le~lllr~lsps~ 50 (56)
T PF12283_consen 13 LLLTYELNRSGLLVENEEIQSQLKQLEKLLLRDLSPSS 50 (56)
T ss_pred HHHHHHhcccccccccHHHHHHHHHHHHHHhhcCCCCc
Confidence 4457888999984 567888888888776666665543
No 154
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=28.89 E-value=3.7e+02 Score=22.98 Aligned_cols=73 Identities=18% Similarity=0.297 Sum_probs=43.5
Q ss_pred cHHHHHHHHHhhcCC----CHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHhh----CCCCCCCCChhhHHHHHHhh
Q psy384 27 CMQDFLGILSRVSRG----SVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDML----GRNIEPQIDDTTVKAHVDKI 98 (101)
Q Consensus 27 ~f~eFl~~l~~~~~~----~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~----g~~~~~~~~~~~~~~~vd~i 98 (101)
+|.-|+.+++...-+ ..++.+...=+......+.-++.++++.++....... |... |+.-.+++..-|..+
T Consensus 137 ~yrRfiq~~~~vv~gi~~~~fe~~~~~~k~~~~~~~~~~l~~~~l~~l~~~~k~~~~~~~g~~f-p~dp~~QL~~AI~aV 215 (879)
T PRK09279 137 SYRRFIQMFGDVVLGIDHELFEEILEELKEKKGVKLDTDLTAEDLKELVERYKEIVKEETGKPF-PQDPYEQLWGAIGAV 215 (879)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCCCccCCCHHHHHHHHHHHHHHHHHHhCCCC-CCChHHHHHHHHHHH
Confidence 355566666543322 2233333333445666777889999998887775444 5443 333456788888877
Q ss_pred cc
Q psy384 99 FS 100 (101)
Q Consensus 99 f~ 100 (101)
|.
T Consensus 216 ~~ 217 (879)
T PRK09279 216 FR 217 (879)
T ss_pred HH
Confidence 75
No 155
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=28.13 E-value=56 Score=21.08 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=30.7
Q ss_pred hhHhcccccHHHHHHHHHhh-------cC-CCHHHHHHHHhhhhccCCCccccHHHHHHHHHH
Q psy384 19 YLLYLVISCMQDFLGILSRV-------SR-GSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 19 ~l~~~g~I~f~eFl~~l~~~-------~~-~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~ 73 (101)
..+++|.|+-.||+..++.- .. ..+..-+..+|+.+ =|....+..|+.....-
T Consensus 38 Sqlrng~IsVreFVr~La~S~~yr~~f~~~~~~~R~iEl~~khl--LGR~p~~~~Ei~~~~~i 98 (131)
T PF00427_consen 38 SQLRNGQISVREFVRALAKSELYRKRFFEPNSNYRFIELAFKHL--LGRAPYNQAEISAYSQI 98 (131)
T ss_dssp HHHHTTSS-HHHHHHHHHTSHHHHHHHTTTS-HHHHHHHHHHHH--CSS--SSHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHHcCHHHHHHHcccccchHHHHHHHHHH--hCCCCCCHHHHHHHHHH
Confidence 33457999999999988642 11 34555566677766 34444556666655543
No 156
>smart00845 GatB_Yqey GatB domain. This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Probab=26.99 E-value=1.8e+02 Score=18.64 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=8.1
Q ss_pred hhHHHHHHhhcc
Q psy384 89 TTVKAHVDKIFS 100 (101)
Q Consensus 89 ~~~~~~vd~if~ 100 (101)
++++++|+.++.
T Consensus 91 ~el~~~v~~vi~ 102 (147)
T smart00845 91 GELEAIVDEVIA 102 (147)
T ss_pred HHHHHHHHHHHH
Confidence 467777777653
No 157
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=26.98 E-value=1.4e+02 Score=21.98 Aligned_cols=19 Identities=0% Similarity=-0.108 Sum_probs=8.9
Q ss_pred hhHhcccccHHHHHHHHHh
Q psy384 19 YLLYLVISCMQDFLGILSR 37 (101)
Q Consensus 19 ~l~~~g~I~f~eFl~~l~~ 37 (101)
..+|+|.|+=+|=+..+..
T Consensus 296 ~~IR~G~itReeal~~v~~ 314 (343)
T TIGR03573 296 IDIRSGRITREEAIELVKE 314 (343)
T ss_pred HHHHcCCCCHHHHHHHHHH
Confidence 3444455555554444443
No 158
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=26.96 E-value=1.8e+02 Score=18.83 Aligned_cols=54 Identities=13% Similarity=-0.037 Sum_probs=28.9
Q ss_pred HHHHHHHhcchhhhhHh--cccccHHHHHHHHHhhcCC-CHHHHHHHHhhhhccCCC
Q psy384 6 LKQFLFLMLPLYNYLLY--LVISCMQDFLGILSRVSRG-SVQEKLQWIFGLYDLNGD 59 (101)
Q Consensus 6 ~~~~~~~~~p~~~~l~~--~g~I~f~eFl~~l~~~~~~-~~~e~l~~aF~~fD~d~~ 59 (101)
+++++...++-+.---+ .+.|+|+.|-..|...... -+++-.+-+|..|=....
T Consensus 27 lkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~~ 83 (138)
T PF14513_consen 27 LKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKPP 83 (138)
T ss_dssp HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS-----
T ss_pred HHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCccc
Confidence 45555555543321111 3689999999999877753 566667778888855443
No 159
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=26.53 E-value=80 Score=19.34 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=19.4
Q ss_pred CCccccHHHHHHHHHHHHHhhCCC
Q psy384 58 GDGLITKKEMEEVVTSIYDMLGRN 81 (101)
Q Consensus 58 ~~G~Is~~el~~~l~~l~~~~g~~ 81 (101)
=.|+|+.+|+..++..+...+...
T Consensus 26 L~~~is~~ef~~iI~~IN~~l~~a 49 (118)
T PF10256_consen 26 LSGYISPEEFEEIINTINQILKEA 49 (118)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHH
Confidence 368999999999999987766543
No 160
>KOG1265|consensus
Probab=26.37 E-value=3.5e+02 Score=23.58 Aligned_cols=70 Identities=14% Similarity=0.253 Sum_probs=48.3
Q ss_pred cccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHH--hhCCCCCCCCChhhHHHHHHh
Q psy384 25 ISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYD--MLGRNIEPQIDDTTVKAHVDK 97 (101)
Q Consensus 25 ~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~--~~g~~~~~~~~~~~~~~~vd~ 97 (101)
..+|+.|...+..+|+. .++..+|.-+-.++.-|+|+++|..++..--. .+..-+.++.+...+..++++
T Consensus 204 ~f~~e~f~~~l~klcpR---~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liek 275 (1189)
T KOG1265|consen 204 DFTLEKFYRLLNKLCPR---PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEK 275 (1189)
T ss_pred hccHHHHHHHHHhcCCc---hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHH
Confidence 46777787777777754 25778999999999899999999988865310 011222456667777777654
No 161
>PF14162 YozD: YozD-like protein
Probab=26.21 E-value=1.2e+02 Score=16.48 Aligned_cols=12 Identities=17% Similarity=0.346 Sum_probs=6.5
Q ss_pred hhhHHHHHHhhc
Q psy384 88 DTTVKAHVDKIF 99 (101)
Q Consensus 88 ~~~~~~~vd~if 99 (101)
+..+.+++|-.|
T Consensus 30 e~El~eiADItF 41 (57)
T PF14162_consen 30 EEELEEIADITF 41 (57)
T ss_pred HHHHHHHHHHHH
Confidence 455555555544
No 162
>KOG3449|consensus
Probab=26.11 E-value=1.8e+02 Score=18.34 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=19.6
Q ss_pred HHHhhhhccCCCccccHHHHHHHHHH
Q psy384 48 QWIFGLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 48 ~~aF~~fD~d~~G~Is~~el~~~l~~ 73 (101)
-.+|-+++.-|+...+..+++.++.+
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~s 29 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILES 29 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 34677777778878888888887775
No 163
>PF07574 SMC_Nse1: Nse1 non-SMC component of SMC5-6 complex; InterPro: IPR011513 Saccharomyces cerevisiae Nse1 (Q07913 from SWISSPROT) forms part of a complex with SMC5-SMC6. This non-structural maintenance of chromosomes (SMC) complex plays an essential role in genomic stability, being involved in DNA repair and DNA metabolism [, ]. It is conserved in eukaryotes from yeast to human.; PDB: 3NW0_A.
Probab=25.91 E-value=1.2e+02 Score=20.54 Aligned_cols=20 Identities=20% Similarity=0.599 Sum_probs=10.2
Q ss_pred ccccHHHHHHHHHHHHHhhC
Q psy384 60 GLITKKEMEEVVTSIYDMLG 79 (101)
Q Consensus 60 G~Is~~el~~~l~~l~~~~g 79 (101)
|.++.+++..++..+....+
T Consensus 14 g~ls~~~~~~l~~~i~~~~~ 33 (200)
T PF07574_consen 14 GILSEEEAKKLLAKICEAHG 33 (200)
T ss_dssp SEEEHHHHHHHHHHHHHH--
T ss_pred CCCCHHHHHHHHHHHHHhcC
Confidence 55555555555555554444
No 164
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=25.88 E-value=1.1e+02 Score=19.42 Aligned_cols=54 Identities=26% Similarity=0.453 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHhhCCCC-------C-CCCC-hhhHHHHHHhhcc
Q psy384 43 VQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI-------E-PQID-DTTVKAHVDKIFS 100 (101)
Q Consensus 43 ~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g~~~-------~-~~~~-~~~~~~~vd~if~ 100 (101)
+.+.+..+..+++ +|.||....+.++..+.+. +..+ + ..++ .+.++++|+.++.
T Consensus 41 ~~~~l~~li~l~~---~~~Is~~~ak~ll~~~~~~-~~~~~~ii~~~~l~~i~d~~el~~~v~~vi~ 103 (148)
T PF02637_consen 41 SPEHLAELINLLE---DGKISKKSAKELLRELLEN-GKSPEEIIEENGLWQISDEEELEALVEEVIA 103 (148)
T ss_dssp THHHHHHHHHHHH---TTSSGHHHHHHHHHHHHHH-TS-HHHHHHHTT---B--CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHc-CCCHHHHHHHcCCCcCCCHHHHHHHHHHHHH
Confidence 3455665666654 5678888888887777644 3321 0 1222 3678888887764
No 165
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=25.77 E-value=1.7e+02 Score=20.02 Aligned_cols=32 Identities=9% Similarity=0.194 Sum_probs=23.0
Q ss_pred CCHHHHHHHHhhhhccCCCccccHHHHHHHHH
Q psy384 41 GSVQEKLQWIFGLYDLNGDGLITKKEMEEVVT 72 (101)
Q Consensus 41 ~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~ 72 (101)
+...+-...+-+.|..|+.|.|+...+..+.+
T Consensus 115 g~~~~l~~lV~~af~~dk~G~l~~~rIl~Lrr 146 (195)
T PF11363_consen 115 GADPELRALVNRAFQVDKEGNLNTSRILGLRR 146 (195)
T ss_pred CCChHHHHHHHHHHhcCCCCCcCHHHHHHHHh
Confidence 44444455678888899999999887766543
No 166
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=25.16 E-value=40 Score=20.26 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=14.3
Q ss_pred hccCCCccccHHHHHHH
Q psy384 54 YDLNGDGLITKKEMEEV 70 (101)
Q Consensus 54 fD~d~~G~Is~~el~~~ 70 (101)
=|.|+.|.||...+++|
T Consensus 68 ~ddD~gGWITPsNIkqi 84 (87)
T PF15017_consen 68 EDDDGGGWITPSNIKQI 84 (87)
T ss_pred ccCCCCccccchhhhhh
Confidence 37788999999988876
No 167
>smart00510 TFS2M Domain in the central regions of transcription elongation factor S-II (and elsewhere).
Probab=25.03 E-value=79 Score=19.25 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=17.1
Q ss_pred chHHHHHHHHHhc----chhhhhHhcccccHHHHHHH
Q psy384 2 YDDKLKQFLFLML----PLYNYLLYLVISCMQDFLGI 34 (101)
Q Consensus 2 ~~e~~~~~~~~~~----p~~~~l~~~g~I~f~eFl~~ 34 (101)
|+..++.+++++- |-..+-+-+|.|+.++++.+
T Consensus 50 Yk~k~Rsl~fNLkd~kN~~Lr~~vl~G~i~p~~lv~M 86 (102)
T smart00510 50 YKNKYRSLYFNLKDKKNPDLRRKVLNGEITPEKLATM 86 (102)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHcCCCCHHHHhcC
Confidence 5566666666652 21111112477777766554
No 168
>COG5562 Phage envelope protein [General function prediction only]
Probab=25.00 E-value=56 Score=21.29 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=13.3
Q ss_pred cccccHHHHHHHHHh
Q psy384 23 LVISCMQDFLGILSR 37 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~ 37 (101)
+|..+|+||+..++.
T Consensus 86 sGqttF~ef~~~la~ 100 (137)
T COG5562 86 SGQTTFEEFCSALAE 100 (137)
T ss_pred cCCccHHHHHHHHHh
Confidence 599999999998874
No 169
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=24.88 E-value=91 Score=14.62 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=9.4
Q ss_pred CccccHHHHHHHHHH
Q psy384 59 DGLITKKEMEEVVTS 73 (101)
Q Consensus 59 ~G~Is~~el~~~l~~ 73 (101)
.|-||.+|+...-..
T Consensus 14 ~G~IseeEy~~~k~~ 28 (31)
T PF09851_consen 14 KGEISEEEYEQKKAR 28 (31)
T ss_pred cCCCCHHHHHHHHHH
Confidence 467777777665444
No 170
>PF08833 Axin_b-cat_bind: Axin beta-catenin binding domain; InterPro: IPR014936 Proteins in this entry are found on the scaffolding protein Axin which is a component of the beta-catenin destruction complex. It competes with the tumour suppressor adenomatous polyposis coli protein (APC) for binding to beta-catenin []. ; PDB: 1QZ7_B.
Probab=24.87 E-value=62 Score=17.01 Aligned_cols=13 Identities=15% Similarity=0.588 Sum_probs=9.5
Q ss_pred hhhHHHHHHhhcc
Q psy384 88 DTTVKAHVDKIFS 100 (101)
Q Consensus 88 ~~~~~~~vd~if~ 100 (101)
++.++++|.+||+
T Consensus 5 qsILD~HvsRV~r 17 (45)
T PF08833_consen 5 QSILDDHVSRVWR 17 (45)
T ss_dssp THHHHHHHHHH--
T ss_pred HHHHHHHHHHHhc
Confidence 5678999999985
No 171
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=24.11 E-value=1.2e+02 Score=16.63 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=17.2
Q ss_pred cccHHHHHHHHHhhcCCCHHHHHH
Q psy384 25 ISCMQDFLGILSRVSRGSVQEKLQ 48 (101)
Q Consensus 25 ~I~f~eFl~~l~~~~~~~~~e~l~ 48 (101)
.|+.++|..++....+.-..+.|.
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~ 52 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLK 52 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHH
Confidence 699999999998877654444443
No 172
>PF01893 UPF0058: Uncharacterised protein family UPF0058; InterPro: IPR002753 These archaebacterial proteins have no known function. Members of the family are about 90-105 amino acid residues long.; PDB: 2GF4_B.
Probab=23.73 E-value=92 Score=18.76 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=28.6
Q ss_pred CchHHHHHHHHHhcchhhhhH--hcccccHHHHHHH-HHhhc-CCCHHHHHHHHhhh
Q psy384 1 MYDDKLKQFLFLMLPLYNYLL--YLVISCMQDFLGI-LSRVS-RGSVQEKLQWIFGL 53 (101)
Q Consensus 1 ~~~e~~~~~~~~~~p~~~~l~--~~g~I~f~eFl~~-l~~~~-~~~~~e~l~~aF~~ 53 (101)
|.++|+.+++.-+.-+.+.+- .+....|++|-.. ..... ..+..+.-...|-+
T Consensus 1 M~K~ELi~LH~lL~~v~~~~e~~~~~~~~~~~Y~~L~i~P~hIHksK~eHK~AIF~L 57 (89)
T PF01893_consen 1 MHKEELIHLHQLLVEVKKYFEEENNDEEDFEEYEELGISPHHIHKSKTEHKAAIFLL 57 (89)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTT--TTTTHHHHHH---TT-TTS-HHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhccCCccchhHHHHcCCCcchhcCCHHHHHHHHHHH
Confidence 789999999987765554443 2457888888553 22221 24455555556654
No 173
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=23.69 E-value=1.2e+02 Score=20.80 Aligned_cols=68 Identities=21% Similarity=0.116 Sum_probs=37.2
Q ss_pred chHHHHHHHHHhcchhhhhHhcccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHH
Q psy384 2 YDDKLKQFLFLMLPLYNYLLYLVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 2 ~~e~~~~~~~~~~p~~~~l~~~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~ 73 (101)
+-++|.+-|+.-||+.+ .|-|...+=.+-...-..+++.+.+...-+..+....|-.|...=-.+...
T Consensus 24 ~l~~Fv~eff~qNPiSq----lgii~~~~~~a~~ls~lsgn~~~h~~~L~~~~~~~~~G~~SLqN~Le~A~~ 91 (193)
T PF04056_consen 24 ALEEFVREFFDQNPISQ----LGIIVMRDGRAERLSELSGNPQEHIEALKKLRKLEPSGEPSLQNGLEMARS 91 (193)
T ss_pred HHHHHHHHHHhcCChhh----eeeeeeecceeEEeeecCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHH
Confidence 34677788888899875 244433332111111123556666665556666777777775443333333
No 174
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=23.49 E-value=1.1e+02 Score=22.17 Aligned_cols=46 Identities=17% Similarity=0.374 Sum_probs=31.8
Q ss_pred cCCCccccHHH---HHHHHHHHHHhhCCCC----CCCCChhhHHHHHHhhccC
Q psy384 56 LNGDGLITKKE---MEEVVTSIYDMLGRNI----EPQIDDTTVKAHVDKIFSE 101 (101)
Q Consensus 56 ~d~~G~Is~~e---l~~~l~~l~~~~g~~~----~~~~~~~~~~~~vd~if~~ 101 (101)
.|..|.|+..| |.+-++++....+.++ .++..++++++.+.++|++
T Consensus 37 ~D~t~~Ls~~e~~~Leq~l~~L~~kt~~QiaVv~vpSt~g~~IE~ya~rlfd~ 89 (271)
T COG1512 37 TDLTGTLSAAERGALEQQLADLEQKTGAQIAVVTVPSTGGETIEQYATRLFDK 89 (271)
T ss_pred eeccccCChhhHHHHHHHHHHHHhccCCeEEEEEecCCCCCCHHHHHHHHHHh
Confidence 46778888765 4555555555555553 4566789999999999864
No 175
>PRK09347 folE GTP cyclohydrolase I; Provisional
Probab=23.34 E-value=2.1e+02 Score=19.53 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhhCCCC
Q psy384 65 KEMEEVVTSIYDMLGRNI 82 (101)
Q Consensus 65 ~el~~~l~~l~~~~g~~~ 82 (101)
+++...++.+...+|.++
T Consensus 6 ~~~~~~v~~iL~~lGeD~ 23 (188)
T PRK09347 6 EKIEEAVREILEALGEDP 23 (188)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 334444444444444433
No 176
>PF09204 Colicin_immun: Bacterial self-protective colicin-like immunity; InterPro: IPR015287 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). Colicin D immunity protein (ImmD) inhibits the bactericidal activity of colicin D by binding to its tRNase catalytic domain []. This entry represents the structural domain of ImmD and related klebicin and microcin immunity proteins. ; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1V74_B 1TFO_B 1TFK_B.
Probab=23.27 E-value=76 Score=19.03 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=33.3
Q ss_pred cccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHhhCCCCC------CCCChhhHHHHHH
Q psy384 23 LVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIE------PQIDDTTVKAHVD 96 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g~~~~------~~~~~~~~~~~vd 96 (101)
+|.|+=.+|.......++ .=-.++.+.....++..++.+++........ -.++++++.+.|.
T Consensus 14 ~~~IsA~~Fse~y~e~wk------------~Er~~~~~~~d~~~l~~~l~~lF~~aD~Y~pd~~re~~e~de~eLr~~v~ 81 (88)
T PF09204_consen 14 NGEISADEFSEAYIELWK------------IERDSGYLLKDDEKLFECLSSLFCAADCYNPDPDREEYEIDEDELRKEVS 81 (88)
T ss_dssp TTSS-HHHHHHHHH----------------HHHHHHTT-SS-HHHHHHHHHHHHHHHTB--STT--TT-B-HHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHhh------------ccccccccccccHHHHHHHHHHHHHHHhhCCCccccccccCHHHHHHHHH
Confidence 477777777665443332 1111122334467788889998866643221 1346778888777
Q ss_pred hhcc
Q psy384 97 KIFS 100 (101)
Q Consensus 97 ~if~ 100 (101)
.+..
T Consensus 82 ~~L~ 85 (88)
T PF09204_consen 82 ATLE 85 (88)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 177
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=23.22 E-value=1.8e+02 Score=17.39 Aligned_cols=48 Identities=19% Similarity=0.131 Sum_probs=33.8
Q ss_pred cccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHH
Q psy384 25 ISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVT 72 (101)
Q Consensus 25 ~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~ 72 (101)
.|...+|...+....+-....+...+=...|.-.+|+||.=|+--..+
T Consensus 22 IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 22 IVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp EEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred EeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 588999999999887644433444444578999999999988875544
No 178
>KOG0169|consensus
Probab=22.85 E-value=4.6e+02 Score=22.04 Aligned_cols=48 Identities=6% Similarity=0.187 Sum_probs=35.5
Q ss_pred cccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHHHH
Q psy384 23 LVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74 (101)
Q Consensus 23 ~g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l 74 (101)
.+.+...+|........... .+.+.|.-|-.+ .++++.++|..++...
T Consensus 186 ~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 186 TGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHG-KEYLSTDDLLRFLEEE 233 (746)
T ss_pred cceehHHHHHHHHHhhccCc---hHHHHHHHHhCC-CCccCHHHHHHHHHHh
Confidence 37888888887765554332 677778777555 8899999999999875
No 179
>PF03395 Pox_P4A: Poxvirus P4A protein; InterPro: IPR005058 P4A is one of the most abundant structural proteins in the Vaccinia virion.; GO: 0005198 structural molecule activity, 0019012 virion
Probab=22.64 E-value=3.8e+02 Score=22.97 Aligned_cols=56 Identities=14% Similarity=0.312 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhcCCCHHHHHHH---Hh---hhhccCCCccccHHHHHHHHHHHHHhhCCCCC
Q psy384 28 MQDFLGILSRVSRGSVQEKLQW---IF---GLYDLNGDGLITKKEMEEVVTSIYDMLGRNIE 83 (101)
Q Consensus 28 f~eFl~~l~~~~~~~~~e~l~~---aF---~~fD~d~~G~Is~~el~~~l~~l~~~~g~~~~ 83 (101)
|--|...+..+...+++..+++ ++ ++=|+-.--+|+++--+.++..+++.+|.+++
T Consensus 469 fmrFfqlLrl~~n~~p~~aiKEvlm~Y~gik~~D~Gsp~~I~~esy~~Fv~lLf~aMGF~Vt 530 (888)
T PF03395_consen 469 FMRFFQLLRLMTNKPPETAIKEVLMTYAGIKLDDKGSPHYIKKESYQDFVILLFSAMGFKVT 530 (888)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhheecCCCCCccccCHHHHHHHHHHHHHhcCCeEE
Confidence 4445555555555555554444 33 33365556679999999999999999998874
No 180
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=22.52 E-value=1.4e+02 Score=19.84 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=27.6
Q ss_pred HHHHHHHHhhhhccCCCccccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHhhcc
Q psy384 43 VQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFS 100 (101)
Q Consensus 43 ~~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd~if~ 100 (101)
+..++..|++..-.++..-|+.++|...+. +|-. ++.+++++.|++.+.
T Consensus 83 t~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cG-----VGV~----VT~E~I~~~V~~~i~ 131 (164)
T PF04558_consen 83 TNLQLDAALKYLKSNPSEPIDVAEFEKACG-----VGVV----VTPEQIEAAVEKYIE 131 (164)
T ss_dssp SHHHHHHHHHHHHHHGG-G--HHHHHHTTT-----TT--------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHcC-----CCeE----ECHHHHHHHHHHHHH
Confidence 456777888877666655677666664432 4433 447788888877653
No 181
>PF09873 DUF2100: Uncharacterized protein conserved in archaea (DUF2100); InterPro: IPR019210 This entry represents various hypothetical archaeal proteins, and has no known function.
Probab=22.34 E-value=2.5e+02 Score=19.72 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=21.9
Q ss_pred cCCCccccHHHHHHHHHHHHHhh----CCCCCCCCChhhHHHHHHhhc
Q psy384 56 LNGDGLITKKEMEEVVTSIYDML----GRNIEPQIDDTTVKAHVDKIF 99 (101)
Q Consensus 56 ~d~~G~Is~~el~~~l~~l~~~~----g~~~~~~~~~~~~~~~vd~if 99 (101)
.-..|.|..++++.++..+.+.- .+.++-.+.+++.++.+..+|
T Consensus 36 dak~G~Id~~e~kkav~~liEAde~lYksaP~H~L~~E~AkeFck~l~ 83 (215)
T PF09873_consen 36 DAKPGKIDVEEFKKAVYSLIEADEYLYKSAPSHELNGEEAKEFCKLLF 83 (215)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHhcCCcccccHhHHHHHHHHHH
Confidence 34456666666666666653211 111222334555555555554
No 182
>KOG3555|consensus
Probab=22.18 E-value=67 Score=24.50 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=31.5
Q ss_pred ccccHHHHHHHHHhhcCCCHHHHHHHHhhhhccCCCccccHHHHHHHHH
Q psy384 24 VISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVT 72 (101)
Q Consensus 24 g~I~f~eFl~~l~~~~~~~~~e~l~~aF~~fD~d~~G~Is~~el~~~l~ 72 (101)
|.++-.|.-.+ .....+..++-.|...|...||.||..|--....
T Consensus 265 l~Ld~sEl~~I----~ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 265 LLLDQSELRAI----ELDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred cccCHHHhhhh----hccCchhHHHHHHhhhcccccCccccchhhhhhc
Confidence 44555544332 2244566888899999999999999988766554
No 183
>PHA00097 K protein K
Probab=22.10 E-value=1.5e+02 Score=15.97 Aligned_cols=36 Identities=25% Similarity=0.520 Sum_probs=25.7
Q ss_pred HhhhhccCCCccc-cHHHHHHHHHHHHHhhCCCCCCC
Q psy384 50 IFGLYDLNGDGLI-TKKEMEEVVTSIYDMLGRNIEPQ 85 (101)
Q Consensus 50 aF~~fD~d~~G~I-s~~el~~~l~~l~~~~g~~~~~~ 85 (101)
..-.|+.|.+|.+ ..+|++..++.+-..+-.+++|+
T Consensus 13 llltyelnrsgllveneeiqs~lk~le~lll~~lsps 49 (56)
T PHA00097 13 LLLTYELNRSGLLVENEEIQSQLKKLEKLLLCNLSPS 49 (56)
T ss_pred HHHHHhhccccceeccHHHHHHHHHHHHHHhhcCCCC
Confidence 3456888999984 55788888888876665555543
No 184
>PHA02142 putative RNA ligase
Probab=21.49 E-value=42 Score=25.44 Aligned_cols=26 Identities=12% Similarity=0.414 Sum_probs=22.5
Q ss_pred HHhhhhccCCCccccHHHHHHHHHHH
Q psy384 49 WIFGLYDLNGDGLITKKEMEEVVTSI 74 (101)
Q Consensus 49 ~aF~~fD~d~~G~Is~~el~~~l~~l 74 (101)
.+|++||.++.++++.+++..++.++
T Consensus 273 ~vF~v~~i~~~~yl~~~e~~~~~~~~ 298 (366)
T PHA02142 273 FAFRAWFIDEQRFATDEEFQDLCRTL 298 (366)
T ss_pred EEEEEEEeccceeCCHHHHHHHHHHc
Confidence 47888888999999999999988864
No 185
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=21.36 E-value=1.1e+02 Score=23.10 Aligned_cols=44 Identities=16% Similarity=0.412 Sum_probs=34.2
Q ss_pred hhccCCCccccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHH
Q psy384 53 LYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVD 96 (101)
Q Consensus 53 ~fD~d~~G~Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd 96 (101)
.+=.|..|.+....-.++++.+.+.+|..++...++++-+.+.+
T Consensus 74 KlPLDErGLL~~A~r~~Fi~~vveAlG~~l~~~~~~eqq~~L~~ 117 (340)
T PF12069_consen 74 KLPLDERGLLNQAARDHFIKMVVEALGRDLTQELTEEQQQKLAD 117 (340)
T ss_pred ecCcccccCcCcccHHHHHHHHHHHhcccccccchhHHHHHhcc
Confidence 35678899999999999999999999999876666655454444
No 186
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms. Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.
Probab=21.10 E-value=2.2e+02 Score=20.52 Aligned_cols=46 Identities=17% Similarity=0.392 Sum_probs=28.5
Q ss_pred hhccCCCccccHHHHHHHHH-HHHHhhCCCCC-------CCCChhhHHHHHHhhc
Q psy384 53 LYDLNGDGLITKKEMEEVVT-SIYDMLGRNIE-------PQIDDTTVKAHVDKIF 99 (101)
Q Consensus 53 ~fD~d~~G~Is~~el~~~l~-~l~~~~g~~~~-------~~~~~~~~~~~vd~if 99 (101)
+|-.||..|||++.|+.=++ .+.. -|..++ ...+-..++..++.+-
T Consensus 42 i~T~dGkeyiT~~~L~~EI~~el~~-~gGRv~~~dL~~~LnVd~~~ie~~~~~i~ 95 (272)
T PF09743_consen 42 IHTTDGKEYITPEQLEKEIKDELYV-HGGRVNLVDLAQALNVDLDHIERRAQEIV 95 (272)
T ss_pred EEECCCCEEECHHHHHHHHHHHHHH-cCCceEHHHHHHhcCcCHHHHHHHHHHHH
Confidence 56789999999999986666 4443 343432 2344555666665543
No 187
>TIGR00134 gatE_arch glutamyl-tRNA(Gln) amidotransferase, subunit E. The Archaea have an Asp-tRNA(Asn) amidotransferase instead of an Asp--tRNA ligase, but the genes have not been identified. It is likely that this protein replaces gatB in Asp-tRNA(Asn) amidotransferase but that both enzymes share gatA.
Probab=20.93 E-value=3.1e+02 Score=22.42 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=35.3
Q ss_pred HHHHHHHhhhhccCCCccccHHHHHHHHHHHHHhhCCCC--------CCCCChhhHHHHHHhhcc
Q psy384 44 QEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI--------EPQIDDTTVKAHVDKIFS 100 (101)
Q Consensus 44 ~e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g~~~--------~~~~~~~~~~~~vd~if~ 100 (101)
.+.+..++++.+ +|.|+.+-.+.++..+...-+ .+ -..+++++++++|+.+..
T Consensus 515 ~~~l~~l~~~~~---~g~is~~~~k~vl~~~~~~~~-~~~~iiee~gL~qlsdeel~~iV~evI~ 575 (620)
T TIGR00134 515 LRHLRDAIKLLE---VGKIAKEGLREILKCMCDEPL-AAEDAARKLKLKLLAEEEIESIIQEIIE 575 (620)
T ss_pred HHHHHHHHHHHH---cCCCcHHHHHHHHHHHHhCCC-CHHHHHHHcCCcCCCHHHHHHHHHHHHH
Confidence 456666666665 788999888888887753211 11 124567778888888764
No 188
>PF13642 DUF4144: protein structure with unknown function; PDB: 2L6O_A.
Probab=20.88 E-value=2.1e+02 Score=17.51 Aligned_cols=39 Identities=13% Similarity=0.202 Sum_probs=26.0
Q ss_pred CccccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHh
Q psy384 59 DGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDK 97 (101)
Q Consensus 59 ~G~Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd~ 97 (101)
++.++.+|+..+++.-....|..+..++.-.++++.++-
T Consensus 61 ~~~lsl~ev~~LIq~H~~~~g~cC~~Ki~f~si~qai~~ 99 (101)
T PF13642_consen 61 SQQLSLEEVTELIQAHAFSLGQCCIAKIQFNSIEQAIEI 99 (101)
T ss_dssp EEE--HHHHHHHHHHHHHHHT---SSSSS-SSHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHhcCCeeeecccCCCHHHHHHh
Confidence 456888999999999888899888877777777776653
No 189
>cd00642 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate. The enzyme product is the precursor of tetrahydrofolate in eubacteria, fungi, and plants and of the folate analogs in methanogenic bacteria. In vertebrates and insects it is the biosynthtic precursor of tetrahydrobiopterin (BH4) which is involved in the formation of catacholamines, nitric oxide, and the stimulation of T lymphocytes. The biosynthetic reaction of BH4 is controlled by a regulatory protein GFRP which mediates feedback inhibition of GTP-CH-I by BH4. This inhibition is reversed by phenylalanine. The decameric GTP-CH-I forms a complex with two pentameric GFRP in the presence of phenylalanine or a combination of GTP and BH4, respectively.
Probab=20.80 E-value=2.5e+02 Score=19.11 Aligned_cols=14 Identities=29% Similarity=0.624 Sum_probs=5.5
Q ss_pred HHHHHHHHHhhCCC
Q psy384 68 EEVVTSIYDMLGRN 81 (101)
Q Consensus 68 ~~~l~~l~~~~g~~ 81 (101)
...++.+...+|.+
T Consensus 7 e~av~~lL~alGeD 20 (185)
T cd00642 7 AAAVREILELLGED 20 (185)
T ss_pred HHHHHHHHHHhCCC
Confidence 33333333344433
No 190
>PRK04028 glutamyl-tRNA(Gln) amidotransferase subunit E; Validated
Probab=20.64 E-value=3e+02 Score=22.53 Aligned_cols=53 Identities=23% Similarity=0.459 Sum_probs=33.6
Q ss_pred HHHHHHhhhhccCCCccccHHHHHHHHHHHHHhhCCCC--------CCCCChhhHHHHHHhhcc
Q psy384 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI--------EPQIDDTTVKAHVDKIFS 100 (101)
Q Consensus 45 e~l~~aF~~fD~d~~G~Is~~el~~~l~~l~~~~g~~~--------~~~~~~~~~~~~vd~if~ 100 (101)
+.+..++++.+ +|.||..-.+.++..+.+..|..+ -.++++++++++|+.+..
T Consensus 522 ~~l~~l~~~~~---~~~is~~~ak~v~~~~~~~~~~~~~~IIee~gl~qiSD~eL~~iV~evIa 582 (630)
T PRK04028 522 EHIEEVFKLVS---EGKIAKEAIEEILKELAENPGKSAEEAAEELGLKGLSEEEVEKIIDEIVE 582 (630)
T ss_pred HHHHHHHHHHH---cCCccHHHHHHHHHHHHhcCCCCHHHHHHHhCcccCCHHHHHHHHHHHHH
Confidence 45555555553 688888888888877654222222 124567788888888764
No 191
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=20.12 E-value=2.4e+02 Score=17.68 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=18.2
Q ss_pred HHHhhhhccCCCccccHHHHHHHHHH
Q psy384 48 QWIFGLYDLNGDGLITKKEMEEVVTS 73 (101)
Q Consensus 48 ~~aF~~fD~d~~G~Is~~el~~~l~~ 73 (101)
..+|-+.-.-|+..+|.+++..++.+
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~A 31 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSA 31 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 34555666667777888888888775
No 192
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=20.10 E-value=1.9e+02 Score=19.52 Aligned_cols=35 Identities=11% Similarity=0.296 Sum_probs=16.9
Q ss_pred ccCCCccccHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHh
Q psy384 55 DLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDK 97 (101)
Q Consensus 55 D~d~~G~Is~~el~~~l~~l~~~~g~~~~~~~~~~~~~~~vd~ 97 (101)
..|.+|+++.+||...+.. .+.. .+.+.+.++|..
T Consensus 26 ~~d~~G~v~v~dLL~~~~~----~~~~----~t~~~i~~vV~~ 60 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRF----KGLW----VTEEDIREVVET 60 (186)
T ss_dssp ---TT--EEHHHHHHHHHH----T-TT------HHHHHHHHHH
T ss_pred ccCCCCCEeHHHHHHHHHH----cCCC----CCHHHHHHHHhh
Confidence 5677888887777766553 2322 335666666653
Done!