RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy384
(101 letters)
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 45.8 bits (109), Expect = 2e-07
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 28 MQDFLGILSR-VSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+FL ++S + RG +E+L+ F L+D + DG I+ E+ V+ S+
Sbjct: 74 FPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSL 121
Score = 25.3 bits (56), Expect = 5.2
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
++L+ F L+D + DGLI + E+ +++ S+
Sbjct: 20 QELKEAFQLFDRDSDGLIDRNELGKILRSL 49
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 36.0 bits (84), Expect = 2e-04
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 12/56 (21%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFSE 101
+L+ F L+D +GDG I+ E++ + S+ + + +D++ E
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLG------------EGLSEEEIDEMIRE 44
Score = 33.3 bits (77), Expect = 0.003
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 29 QDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVT 72
+ L + G +E++ + D +GDG I +E E++
Sbjct: 20 DELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELMA 63
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 32.4 bits (75), Expect = 0.003
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+L+ F L+D +GDG I +E ++++ ++
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKAL 29
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 34.5 bits (79), Expect = 0.005
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 49 WIFGLYDLNGDGLITKKEMEEVVTSIYDM 77
W+ L D G GL+ +KE++E+ +I+ +
Sbjct: 874 WLASLGDAAGQGLVERKELDELARAIHKI 902
>gnl|CDD|183426 PRK12309, PRK12309, transaldolase/EF-hand domain-containing
protein; Provisional.
Length = 391
Score = 33.6 bits (77), Expect = 0.010
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 48 QWIFGLYDLNGDGLITKKE 66
Q IF LYDL+GDG IT++E
Sbjct: 337 QEIFRLYDLDGDGFITREE 355
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not
undergo calcium dependent conformational changes.
Length = 29
Score = 29.7 bits (68), Expect = 0.027
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 46 KLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+L+ F +D +GDG I+ +E +E++ +
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKKL 29
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 29.2 bits (67), Expect = 0.046
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 50 IFGLYDLNGDGLITKKEMEEVV 71
+F +D NGDG I+K+E++ ++
Sbjct: 4 LFRQFDTNGDGKISKEELKRLL 25
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 29.7 bits (67), Expect = 0.14
Identities = 17/68 (25%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 30 DFLGILSRVSRGS-VQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDD 88
+FL +++R + + +E+++ F ++D +G+G I+ E+ V+T++ + L + ++D+
Sbjct: 68 EFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLT---DEEVDE 124
Query: 89 TTVKAHVD 96
+A VD
Sbjct: 125 MIREADVD 132
Score = 28.6 bits (64), Expect = 0.41
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Query: 51 FGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 17 FSLFDKDGDGTITTKELGTVMRS----LGQN 43
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 27.6 bits (62), Expect = 0.18
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 50 IFGLYDLNGDGLITKKEMEEVVTSI 74
F L+D +GDG I+ +E+ + + S+
Sbjct: 5 AFKLFDKDGDGYISAEELRKALRSL 29
>gnl|CDD|180659 PRK06690, PRK06690, acetyl-CoA acetyltransferase; Provisional.
Length = 361
Score = 28.2 bits (63), Expect = 0.76
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 50 IFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDD 88
G +G++ E++++ + L + +E +IDD
Sbjct: 12 PIG----KKNGMLKDYEVQQLAAPLLTFLSKGMEREIDD 46
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 25.8 bits (57), Expect = 1.8
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 31 FLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVV 71
+ +++ V+E ++ F D +GDG I+ +E E +
Sbjct: 20 LKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
Score = 24.6 bits (54), Expect = 3.9
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 53 LYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFSE 101
L D +GDG I +E+ +++ ++ L D V+ ++ F+E
Sbjct: 2 LLDKDGDGYIDVEELRKLLKALGLKL--------TDEEVEELIEADFNE 42
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 26.3 bits (58), Expect = 3.5
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 38 VSRGSVQEKLQWIFGLYDLNGDGLITKK 65
+ ++ E+LQW+ Y L+ ++ +K
Sbjct: 1293 NTHAALAERLQWMQATYALDDSDVLMQK 1320
>gnl|CDD|173944 cd08185, Fe-ADH1, Iron-containing alcohol dehydrogenases-like.
Iron-containing alcohol dehydrogenases-like (ADH).
Alcohol dehydrogenase catalyzes the reduction of
acetaldehyde to alcohol with NADP as cofactor. Its
activity requires iron ions. The protein structure
represents a dehydroquinate synthase fold and is a
member of the iron-containing alcohol dehydrogenase-like
family. They are distinct from other alcohol
dehydrogenases which contain different protein domains.
Proteins of this family have not been characterized.
Their specific function is unknown. They are present in
bacteria and archaea.
Length = 380
Score = 25.6 bits (57), Expect = 4.7
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIF 99
KL GL DL D +TK+++ ++ + + +G E + T + +++I+
Sbjct: 326 RKLLKRIGLDDLLSDLGVTKEDIPKLADNARETMGGLFEADPAELT-REDIEEIY 379
>gnl|CDD|236210 PRK08267, PRK08267, short chain dehydrogenase; Provisional.
Length = 260
Score = 25.3 bits (56), Expect = 6.2
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 49 WIFGLYDLNGDGL 61
W G YD+N GL
Sbjct: 26 WRVGAYDINEAGL 38
>gnl|CDD|130734 TIGR01673, holin_LLH, phage holin, LL-H family. This model
represents a putative phage holin from a number of phage
and prophage regions of Gram-positive bacteria. Like
other holins, it is small (about 100 amino acids) with
stretches of hydrophobic sequence and is encoded
adjacent to lytic enzymes [Mobile and extrachromosomal
element functions, Prophage functions].
Length = 108
Score = 24.4 bits (53), Expect = 8.2
Identities = 6/54 (11%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 48 QWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFSE 101
+ ++ +G G ++ +T P+ D ++ ++ +E
Sbjct: 53 SAVQQNFNESGGGAEKLEQAFNYITEELKKAHI---PKPSDAQIEGAIEAAVAE 103
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.143 0.416
Gapped
Lambda K H
0.267 0.0908 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,257,405
Number of extensions: 447012
Number of successful extensions: 463
Number of sequences better than 10.0: 1
Number of HSP's gapped: 463
Number of HSP's successfully gapped: 40
Length of query: 101
Length of database: 10,937,602
Length adjustment: 67
Effective length of query: 34
Effective length of database: 7,965,884
Effective search space: 270840056
Effective search space used: 270840056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (23.9 bits)