RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy384
(101 letters)
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 80.6 bits (199), Expect = 9e-21
Identities = 34/74 (45%), Positives = 50/74 (67%)
Query: 28 MQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQID 87
+DF+ LS + RG+V EKL+W F LYD+N DG I K+EM ++V +IYDM+G+ P +
Sbjct: 75 FEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLK 134
Query: 88 DTTVKAHVDKIFSE 101
+ T + HVD F +
Sbjct: 135 EDTPRQHVDVFFQK 148
Score = 26.3 bits (58), Expect = 1.6
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 42 SVQEKLQWIFGLYDLNGDGLITKKEMEEV 70
+ ++ + F D N DG++T E E
Sbjct: 137 TPRQHVDVFFQKMDKNKDGIVTLDEFLES 165
Score = 24.4 bits (53), Expect = 8.0
Identities = 4/47 (8%), Positives = 17/47 (36%)
Query: 35 LSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
L + + +E G + G++ ++ +++ + +
Sbjct: 9 LEAQTNFTKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDAS 55
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 81.1 bits (200), Expect = 1e-20
Identities = 33/75 (44%), Positives = 50/75 (66%)
Query: 27 CMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQI 86
+DF+ LS + RG+VQEKL W F LYD+N DG ITK+EM +++ +IYDM+G+ P +
Sbjct: 120 SFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVL 179
Query: 87 DDTTVKAHVDKIFSE 101
+ + HV+ F +
Sbjct: 180 KEDAPRQHVETFFQK 194
Score = 27.5 bits (61), Expect = 0.62
Identities = 10/50 (20%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 42 SVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTV 91
+ ++ ++ F D N DG++T E E + + R++ Q+ + +
Sbjct: 183 APRQHVETFFQKMDKNKDGVVTIDEFIESCQK-DENIMRSM--QLFENVI 229
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 80.8 bits (199), Expect = 2e-20
Identities = 34/74 (45%), Positives = 50/74 (67%)
Query: 28 MQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQID 87
+DF+ LS + RG+V EKL+W F LYD+N DG I K+EM ++V +IYDM+G+ P +
Sbjct: 108 FEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLK 167
Query: 88 DTTVKAHVDKIFSE 101
+ T + HVD F +
Sbjct: 168 EDTPRQHVDVFFQK 181
Score = 28.0 bits (62), Expect = 0.43
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 9/56 (16%)
Query: 42 SVQEKLQWIFGLYDLNGDGLITKKEMEEVVT---SIYDMLGRNIEPQIDDTTVKAH 94
+ ++ + F D N DG++T E E +I L Q+ + H
Sbjct: 170 TPRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSL------QLFQNVMVEH 219
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 79.5 bits (196), Expect = 3e-20
Identities = 32/75 (42%), Positives = 49/75 (65%)
Query: 27 CMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQI 86
+F+ LS SRG++ EKL+W F LYDL+ DG IT+ EM ++V +IY M+G +E
Sbjct: 81 EFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPE 140
Query: 87 DDTTVKAHVDKIFSE 101
++ T + VD+IF+
Sbjct: 141 EENTPEKRVDRIFAM 155
Score = 27.5 bits (61), Expect = 0.66
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 42 SVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73
+ ++++ IF + D N DG +T +E +E +
Sbjct: 144 TPEKRVDRIFAMMDKNADGKLTLQEFQEGSKA 175
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 80.5 bits (198), Expect = 4e-20
Identities = 34/75 (45%), Positives = 50/75 (66%)
Query: 27 CMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQI 86
+DF+ LS + RG+V EKL+W F LYD+N DG ITK+EM ++ SIYDM+GR+ P +
Sbjct: 147 HFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPIL 206
Query: 87 DDTTVKAHVDKIFSE 101
+ HV++ F +
Sbjct: 207 REDAPLEHVERFFQK 221
Score = 27.7 bits (61), Expect = 0.68
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Query: 42 SVQEKLQWIFGLYDLNGDGLITKKEMEEVVT---SIYDMLGRNIEPQIDDTTV 91
+ E ++ F D N DG++T E E +I + + Q+ + +
Sbjct: 210 APLEHVERFFQKMDRNQDGVVTIDEFLETCQKDENIMNSM------QLFENVI 256
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 77.6 bits (191), Expect = 1e-19
Identities = 29/74 (39%), Positives = 50/74 (67%)
Query: 28 MQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQID 87
++F+ LS SRG +++KL+W F +YDL+G+G I+K EM E+V +IY M+ ++ D
Sbjct: 82 FREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPED 141
Query: 88 DTTVKAHVDKIFSE 101
++T + +KIF +
Sbjct: 142 ESTPEKRTEKIFRQ 155
Score = 27.5 bits (61), Expect = 0.70
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 42 SVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73
+ +++ + IF D N DG ++ +E S
Sbjct: 144 TPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKS 175
Score = 25.2 bits (55), Expect = 4.2
Identities = 6/53 (11%), Positives = 20/53 (37%)
Query: 29 QDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + L + + E +W G G ++ +E +++ + + +
Sbjct: 10 PEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDAS 62
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 75.2 bits (185), Expect = 1e-18
Identities = 30/74 (40%), Positives = 47/74 (63%)
Query: 28 MQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQID 87
++F+ LS SRG + +KL W F LYDL+ +GLI+ EM +V +IY M+G ++ D
Sbjct: 82 FKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPED 141
Query: 88 DTTVKAHVDKIFSE 101
+ T + V+KIF+
Sbjct: 142 EDTPEKRVNKIFNM 155
Score = 25.2 bits (55), Expect = 3.7
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 42 SVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73
+ ++++ IF + D N DG +T +E E
Sbjct: 144 TPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKR 175
Score = 24.0 bits (52), Expect = 9.7
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 42 SVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+E QW G + G + K E +++ + +
Sbjct: 23 DKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPS 62
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 74.5 bits (183), Expect = 4e-18
Identities = 15/74 (20%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 28 MQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQID 87
+F+ ++ + + +++KL+W F LYD +G+G I K E+ ++ ++ + G+
Sbjct: 76 FLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQ------Q 129
Query: 88 DTTVKAHVDKIFSE 101
+ + ++ +F +
Sbjct: 130 TLSPEEFINLVFHK 143
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 73.4 bits (180), Expect = 8e-18
Identities = 33/75 (44%), Positives = 46/75 (61%)
Query: 27 CMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQI 86
++F+ +LS SRG+++EKL W F LYDLN DG IT EM +V S+Y M+G +
Sbjct: 81 HFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNE 140
Query: 87 DDTTVKAHVDKIFSE 101
D+ T + V KIF
Sbjct: 141 DEATPEMRVKKIFKL 155
Score = 26.7 bits (59), Expect = 1.2
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 21 LYLVISCMQDFLGILSRVSRG--SVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73
+ +++ + +G + ++ + + +++ IF L D N DG IT E E
Sbjct: 121 MLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKV 175
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 72.1 bits (177), Expect = 2e-17
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 28 MQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI----- 82
+++ L+ V RG+++ KL+W F +YD + +G I ++E+ ++V SIY +
Sbjct: 78 FLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEA 137
Query: 83 EPQIDDTTVKAHVDKIFSE 101
E Q T + VD+IF
Sbjct: 138 EQQGKLLTPEEVVDRIFLL 156
Score = 27.5 bits (61), Expect = 0.62
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 21 LYLVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVT---SIYDM 77
+Y + + + + +E + IF L D NGDG ++ E E + M
Sbjct: 124 IYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARRDKWVMKM 183
Query: 78 LGRNIEP 84
L ++ P
Sbjct: 184 LQMDLNP 190
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 71.7 bits (176), Expect = 2e-17
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 27 CMQDFLGILSRVS-RGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQ 85
+DFL +LS S + K + F ++D + DG + ++++ +V + G + +
Sbjct: 79 SFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNC---LTGEGEDTR 135
Query: 86 IDDTTVKAHVDKIFSE 101
+ + +K +D I E
Sbjct: 136 LSASEMKQLIDNILEE 151
Score = 26.7 bits (59), Expect = 1.2
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 43 VQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDML 78
+++ + I D++ DG I E + V++ D
Sbjct: 141 MKQLIDNILEESDIDRDGTINLSEFQHVISRSPDFA 176
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 71.4 bits (175), Expect = 8e-17
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 28 MQDFLGILSRVS-RGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQI 86
++F LS + +K+ + F LYDL G I ++E++++V + G N +
Sbjct: 104 FEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMN----L 159
Query: 87 DDTTVKAHVDKIFSE 101
DT ++ +DK F E
Sbjct: 160 KDTVIEDIIDKTFEE 174
Score = 25.9 bits (57), Expect = 2.3
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 43 VQEKLQWIFGLYDLNGDGLITKKEMEEVV 71
+++ + F D DG I K+E +V
Sbjct: 164 IEDIIDKTFEEADTKHDGKIDKEEWRSLV 192
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 70.2 bits (172), Expect = 1e-16
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 28 MQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQID 87
+++ LS V +G V +KL+W F LYD++G+G I + E+ ++ +I + N +
Sbjct: 71 FMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCN-----E 125
Query: 88 DTTVKAHVDKIFSE 101
T + + +F +
Sbjct: 126 AMTAEEFTNMVFDK 139
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 68.6 bits (168), Expect = 5e-16
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 28 MQDFLGILSRVS-RGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQI 86
+F+ L V EK+++ F LYDL G I ++E++E+V ++ E +
Sbjct: 93 FGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHE----SELVL 148
Query: 87 DDTTVKAHVDKIFSE 101
+ ++ VDK F +
Sbjct: 149 SEDMIEVMVDKAFVQ 163
Score = 25.9 bits (57), Expect = 2.2
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 43 VQEKLQWIFGLYDLNGDGLITKKEMEEVV 71
++ + F D DG I E ++ V
Sbjct: 153 IEVMVDKAFVQADRKNDGKIDIDEWKDFV 181
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 68.3 bits (167), Expect = 9e-16
Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 29 QDFLGILSRVS-RGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQID 87
+DFL +LS S + K + F ++D + DG + ++++ +V + G + ++
Sbjct: 112 EDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNC---LTGEGEDTRLS 168
Query: 88 DTTVKAHVDKIFSE 101
+ +K +D I E
Sbjct: 169 ASEMKQLIDNILEE 182
Score = 26.7 bits (59), Expect = 1.1
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 43 VQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDML 78
+++ + I D++ DG I E + V++ D
Sbjct: 172 MKQLIDNILEESDIDRDGTINLSEFQHVISRSPDFA 207
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 68.1 bits (166), Expect = 1e-15
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 27 CMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQI 86
++++ L + G +KL+W F LYD++G+G I+K E+ E+V +I+ M+ +
Sbjct: 89 DFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLL 148
Query: 87 --DDTTVKAHVDKIFSE 101
D+ T + +KI+
Sbjct: 149 PDDENTPEKRAEKIWKY 165
Score = 27.6 bits (61), Expect = 0.56
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 42 SVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73
+ +++ + I+ + N D +T+KE E +
Sbjct: 154 TPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLA 185
Score = 24.9 bits (54), Expect = 4.8
Identities = 8/53 (15%), Positives = 19/53 (35%)
Query: 29 QDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
++ L L ++ S +E W G IT+++ + + +
Sbjct: 18 KEILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPK 70
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 56.7 bits (137), Expect = 2e-11
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 39 SRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKI 98
S KL + F LYDL+ D I++ E+ +V+ + + I D + + D+
Sbjct: 107 PLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGV-------NISDEQLGSIADRT 159
Query: 99 FSE 101
E
Sbjct: 160 IQE 162
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 48.8 bits (116), Expect = 7e-09
Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 28 MQDFLGILSRV-SRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQI 86
M+ G++++ + S QE F ++D +G+ L+ E+ +T ++ G P +
Sbjct: 50 MEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLM 109
Query: 87 DDTTVKAHVDKIFSE 101
+ + +D + +
Sbjct: 110 SEDELINIIDGVLRD 124
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 49.0 bits (117), Expect = 1e-08
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 39 SRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKI 98
S + KL + F LYDL+ DG I++ EM +V+ M+G + + ++ D+
Sbjct: 108 PLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRL---MVGVQ----VTEEQLENIADRT 160
Query: 99 FSE 101
E
Sbjct: 161 VQE 163
Score = 25.1 bits (55), Expect = 3.8
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 45 EKLQWIFGLYDLNGDGLITKKE 66
+L F D N G +++ +
Sbjct: 29 LRLHHRFRALDRNKKGYLSRMD 50
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 46.5 bits (111), Expect = 7e-08
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 29 QDFLGILSRVS-RGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQID 87
++F+ +S+ S +G ++KL++ F +YD++ DG I+ E+ +V+ M+G N +
Sbjct: 58 KEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLK---MMVGNN----LK 110
Query: 88 DTTVKAHVDKIFSE 101
DT ++ VDK
Sbjct: 111 DTQLQQIVDKTIIN 124
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 44.3 bits (104), Expect = 8e-07
Identities = 7/74 (9%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 28 MQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIE-PQI 86
+ F + + + +++K +++F + G ++ + ++ + + E
Sbjct: 151 VLSFKTGIISLCKAHLEDKYRYLFKQVA-SSTGFCDQRRLGLLLHDSIQIPRQLGEVASF 209
Query: 87 DDTTVKAHVDKIFS 100
+ ++ V F
Sbjct: 210 GGSNIEPSVRSCFQ 223
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 42.7 bits (100), Expect = 2e-06
Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 29 QDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLG-RNIEPQID 87
+ +++ +L+ F + D N DG +T +E++E++ I+ + D
Sbjct: 82 DELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERAD 141
Query: 88 D 88
+
Sbjct: 142 E 142
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 39.2 bits (91), Expect = 2e-05
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 47 LQWIFGLYDLNGDGLITKKEMEEVVT----SIYDMLGRNIEPQIDDTTVKAHVDKIFSE 101
+ F L+D+N DG++ ++E+E + T +YD + + + + +
Sbjct: 22 PKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKN 80
Score = 25.7 bits (56), Expect = 1.8
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 48 QWIFGLYDLNGDGLITKKEMEE 69
+ + D N D L+T +E
Sbjct: 75 EHVMKNVDTNQDRLVTLEEFLA 96
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 39.0 bits (91), Expect = 5e-05
Identities = 6/36 (16%), Positives = 16/36 (44%)
Query: 44 QEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLG 79
+ ++ F +D +G+G I + + ++ G
Sbjct: 3 ERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFG 38
Score = 30.9 bits (70), Expect = 0.034
Identities = 9/50 (18%), Positives = 18/50 (36%)
Query: 25 ISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
++ L + L G+ D +GDG +T + +T+
Sbjct: 78 VTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALTAF 127
>2hps_A Coelenterazine-binding protein with bound coelent;
bioluminescence, southeast collabora structural
genomics, secsg, structural genomics, PSI; HET: CTZ;
1.72A {Renilla muelleri} PDB: 2hq8_A
Length = 186
Score = 38.6 bits (90), Expect = 6e-05
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEP 84
K++ D+ GDG I++++ E + I + + E
Sbjct: 14 RKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEK 53
Score = 30.5 bits (69), Expect = 0.063
Identities = 6/47 (12%), Positives = 18/47 (38%)
Query: 28 MQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
D L + + + ++ D + DG ++ E + + ++
Sbjct: 85 ATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAV 131
Score = 25.5 bits (56), Expect = 3.0
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIY 75
+K F D N +G I++ E V
Sbjct: 138 DKAITCFNTLDFNKNGQISRDEFLVTVNDFL 168
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR
{Saccharopolyspora erythraea} SCOP: a.39.1.5
Length = 176
Score = 37.8 bits (88), Expect = 1e-04
Identities = 8/38 (21%), Positives = 21/38 (55%)
Query: 44 QEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
++L+ F +D +G+G + + + E+ I + G++
Sbjct: 6 SDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKD 43
Score = 32.0 bits (73), Expect = 0.016
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 43 VQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+ ++ I G+ D N DG I E +T++
Sbjct: 100 LGPVVKGIVGMCDKNADGQINADEFAAWLTAL 131
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 37.4 bits (86), Expect = 2e-04
Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 20 LLYLVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLG 79
L +++ ++FL I R + + I+ YD + G I+ E++ + L
Sbjct: 79 LANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKD----LF 134
Query: 80 RNIEPQIDDTTVKAHVDKIFSE 101
+ +I + + D +
Sbjct: 135 LQHKKKIPPNKLDEYTDAMMKI 156
Score = 31.2 bits (70), Expect = 0.034
Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 35 LSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAH 94
+ S+ + + IF YD++ G + E++ V + + P I +
Sbjct: 186 MDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKD----MMELVRPSISGGDLDKF 241
Query: 95 VDKIFSE 101
+ + +
Sbjct: 242 RECLLTH 248
Score = 30.4 bits (68), Expect = 0.073
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 50 IFGLYDLNGDGLITKKEMEEV 70
I+ +D + +G I KE+++
Sbjct: 16 IWQHFDADDNGYIEGKELDDF 36
Score = 29.6 bits (66), Expect = 0.14
Identities = 11/75 (14%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 28 MQDFLGILSR-VSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQI 86
++D + + + E + ++D N DG + ++ ++ + L +
Sbjct: 130 LKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDAS 189
Query: 87 DDTTVKAHVDKIFSE 101
K +KIF+
Sbjct: 190 SQVERKRDFEKIFAH 204
Score = 28.5 bits (63), Expect = 0.33
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 38 VSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEV 70
+S G + + + + D+N DG I K E+
Sbjct: 233 ISGGDLDKFRECLLTHCDMNKDGKIQKSELALC 265
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 37.2 bits (86), Expect = 3e-04
Identities = 10/53 (18%), Positives = 25/53 (47%)
Query: 44 QEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVD 96
++ F LYD +G+G I + E++ ++ + + + ++ T K +
Sbjct: 190 GKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMA 242
Score = 35.2 bits (81), Expect = 0.001
Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 13/83 (15%)
Query: 28 MQDFLGILSRVSRGSVQEK---------LQWIFGLYDLNGDGLITKKEMEEVVTSIYDML 78
+ + +L + + + YD + G I +E++ + L
Sbjct: 77 IVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKD----L 132
Query: 79 GRNIEPQIDDTTVKAHVDKIFSE 101
+DDT + + D +
Sbjct: 133 LEKANKTVDDTKLAEYTDLMLKL 155
Score = 30.2 bits (68), Expect = 0.085
Identities = 7/52 (13%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 50 IFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFSE 101
I+ +D +G G + KE++ ++ L + + + + +
Sbjct: 21 IWLHFDADGSGYLEGKELQNLIQE----LLQA--RKKAGLELSPEMKTFVDQ 66
Score = 24.4 bits (53), Expect = 9.0
Identities = 7/68 (10%), Positives = 19/68 (27%), Gaps = 3/68 (4%)
Query: 32 LGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTV 91
L + + + +++ Y DG I + E+ + + +
Sbjct: 45 LLQARKKAGLELSPEMKTFVDQYGQRDDGKI---GIVELAHVLPTEENFLLLFRCQQLKS 101
Query: 92 KAHVDKIF 99
K +
Sbjct: 102 CEEFMKTW 109
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 36.7 bits (85), Expect = 4e-04
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIE 83
+L F +DL+ DG + E+ + ++ E
Sbjct: 36 SRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDE 74
Score = 30.6 bits (69), Expect = 0.048
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 43 VQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+ + + D +GDG + E++ ++ +
Sbjct: 126 IALLSNSYYDVLDDDGDGTVDVDELKTMMKAF 157
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 34.5 bits (80), Expect = 6e-04
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 31 FLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+S+ ++ LQ IF D +G+G I + E + SI
Sbjct: 22 VKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSI 65
Score = 25.2 bits (56), Expect = 1.5
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 47 LQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+ +F D+NGDG ++ +E++ V+
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKK 29
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal
binding protein; NMR {Neanthes diversicolor} SCOP:
a.39.1.5 PDB: 2scp_A
Length = 174
Score = 35.5 bits (82), Expect = 0.001
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIE 83
+K++ F D + DG IT+ + E + E
Sbjct: 6 QKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAE 44
Score = 30.8 bits (70), Expect = 0.040
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 43 VQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
V+ L F D N D I++ E +
Sbjct: 92 VEGPLPLFFRAVDTNEDNNISRDEYGIFFGML 123
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 35.3 bits (82), Expect = 0.001
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 30 DFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDT 89
DFL +E F +D++G+G I+ +E++ + +IE + D
Sbjct: 114 DFLAATIDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRI------FGRDDIENPLIDK 167
Query: 90 TVKA 93
+ +
Sbjct: 168 AIDS 171
Score = 28.7 bits (65), Expect = 0.20
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI-EPQIDD 88
L+ IF D++ G ++ +E+ + +G P I
Sbjct: 57 NNLRNIFIALDVDNSGTLSSQEILDG----LKKIGYQKIPPDIHQ 97
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent
protein; HET: CZN; 1.60A {Aequorea victoria} SCOP:
a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 34.8 bits (80), Expect = 0.001
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIY-DMLGRNIEPQ 85
+ + +F D+N +G I+ EM + I + LG E
Sbjct: 16 GRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQA 57
Score = 31.3 bits (71), Expect = 0.025
Identities = 8/54 (14%), Positives = 19/54 (35%)
Query: 21 LYLVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+ D L ++ ++ +F + D + +G IT E + +
Sbjct: 85 IEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAA 138
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 33.7 bits (78), Expect = 0.002
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 43 VQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDD 88
+ + ++ IF +D NGDG I+ E+ + + + LG ++
Sbjct: 1 MADDMERIFKRFDTNGDGKISLSELTDALRT----LGSTSADEVQR 42
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 33.4 bits (77), Expect = 0.002
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 43 VQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
V+ +L+ F D NGDG +T E++ + ++
Sbjct: 5 VKAELEAAFKKLDANGDGYVTALELQTFMVTL 36
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 34.5 bits (80), Expect = 0.002
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 29 QDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+F+ +++ +E L F +D +G G IT E+++
Sbjct: 66 GEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDF 111
Score = 29.1 bits (66), Expect = 0.19
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI-EPQIDD 88
L+ +F + D + G IT E+++ + +G + E +I D
Sbjct: 10 GGLKELFKMIDTDNSGTITFDELKDGLKR----VGSELMESEIKD 50
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 33.8 bits (78), Expect = 0.003
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDD 88
EKL+ F + D +G G ITK+++++ + G + D
Sbjct: 52 EKLKSTFLVLDEDGKGYITKEQLKKG----LEKDGLKLPYNFDL 91
Score = 31.8 bits (73), Expect = 0.019
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 30 DFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDT 89
+F+ + S ++ + F ++D++ DG IT E+ + L +
Sbjct: 108 EFIAAALDRKQLS-KKLIYCAFRVFDVDNDGEITTAELAHI-------LYNGNKKGNITQ 159
Query: 90 TVKAHVDKIFSE 101
V ++ +
Sbjct: 160 RDVNRVKRMIRD 171
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 34.0 bits (78), Expect = 0.003
Identities = 7/53 (13%), Positives = 14/53 (26%), Gaps = 4/53 (7%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDK 97
E +F + G + E+ + LG I + +
Sbjct: 117 ELAYNLFVMNARARSGTLEPHEILPALQQ----LGFYINQRTSLLLHRLFARG 165
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 32.7 bits (75), Expect = 0.005
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+L+ +F D N G + ++E + T +
Sbjct: 27 ARLRSVFAACDANRSGRLEREEFRALCTEL 56
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 33.9 bits (78), Expect = 0.005
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 15/93 (16%)
Query: 20 LLYLVISCMQDFLG-----------ILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEME 68
L +S M+ F G I S+++ +++L IF D NGDG + KKE+
Sbjct: 319 TLCGALSNMRKFEGSQKLAQAAILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELI 378
Query: 69 EVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFSE 101
E Y++L + V+ VD I E
Sbjct: 379 EG----YNVLRNFKNELGELKNVEEEVDNILKE 407
Score = 28.1 bits (63), Expect = 0.45
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 44 QEKLQWIFGLYDLNGDGLITKKEMEEV 70
+E+L+ F L+D + G ITK+E+ +
Sbjct: 434 EERLRRAFNLFDTDKSGKITKEELANL 460
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 33.5 bits (77), Expect = 0.005
Identities = 15/95 (15%), Positives = 37/95 (38%), Gaps = 13/95 (13%)
Query: 20 LLYLVISCMQDFLG-----------ILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEME 68
L ++ ++ F + S+++ ++L IF D N DG++ + E+
Sbjct: 295 SLESAMTNIRQFQAEKKLAQAALLYMASKLTTLDETKQLTEIFRKLDTNNDGMLDRDELV 354
Query: 69 EVVTSIYDM--LGRNIEPQIDDTTVKAHVDKIFSE 101
+ + N Q + +T++ +D +
Sbjct: 355 RGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPL 389
Score = 27.3 bits (61), Expect = 0.71
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 44 QEKLQWIFGLYDLNGDGLITKKEMEEV 70
+E+++ F ++D +G G I+ KE+ ++
Sbjct: 416 RERMERAFKMFDKDGSGKISTKELFKL 442
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth
muscle, myosin subfragment 2, heavy meromyosin,
essential light chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 33.4 bits (77), Expect = 0.006
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 43 VQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI-EPQIDD 88
VQE + F L D + DG I+K ++ +D LGR E ++D
Sbjct: 56 VQE-FKEAFQLIDQDKDGFISKNDIRAT----FDSLGRLCTEQELDS 97
Score = 26.5 bits (59), Expect = 1.5
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 29 QDFLGILSRVSRGSVQEK-LQWIFGLYDLNGDGLITKKEMEEVVTSI 74
FL I G+ +E + F L+D GDG ++ ++ +T+
Sbjct: 109 TMFLTIFGDRIAGTDEEDVIVNAFNLFD-EGDGKCKEETLKRSLTTW 154
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 32.2 bits (74), Expect = 0.006
Identities = 11/45 (24%), Positives = 25/45 (55%)
Query: 30 DFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+ L S + +E+++ F + D +G+G I+ E+ V+T++
Sbjct: 14 ENLYFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNL 58
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 33.2 bits (76), Expect = 0.006
Identities = 11/54 (20%), Positives = 19/54 (35%)
Query: 21 LYLVISCMQDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
L L +R ++E +F ++D +G G IT E +
Sbjct: 89 LDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKIS 142
Score = 31.6 bits (72), Expect = 0.024
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIY-DMLGRNI-EPQIDDTTVKAHVDKI 98
++ + +F D+NG+G IT E+ + L + + V+A
Sbjct: 20 KRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGC 75
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 33.2 bits (76), Expect = 0.006
Identities = 8/44 (18%), Positives = 14/44 (31%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDD 88
L F D N +G +++KE E + +
Sbjct: 188 AALVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDALFRY 231
Score = 30.9 bits (70), Expect = 0.050
Identities = 8/53 (15%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDK 97
L+ ++ D + G ++K+E+++V+ + + + + + VD
Sbjct: 253 LVLRILYAFADFDKSGQLSKEEVQKVLEDAH--IPESARKKFEHQFSVVDVDD 303
Score = 30.5 bits (69), Expect = 0.055
Identities = 6/34 (17%), Positives = 18/34 (52%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDML 78
L+ +F ++G G + +++++V+ D +
Sbjct: 122 NILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTI 155
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 32.9 bits (76), Expect = 0.007
Identities = 9/45 (20%), Positives = 21/45 (46%)
Query: 30 DFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+F+ +++ ++ L F +D +G G IT E+++
Sbjct: 84 EFIAATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEF 128
Score = 29.8 bits (68), Expect = 0.087
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 26 SCMQDFLGILSRV--SRGSVQEK--LQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
S M F + RV S +E L+ +F + D + G IT +E++ + +G N
Sbjct: 4 SAMNKFKKMALRVIAESLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKR----VGAN 59
Query: 82 I-EPQIDD 88
+ E +I D
Sbjct: 60 LKESEILD 67
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer,
domain-swapping, EF-hand; 1.75A {Chenopodium album}
SCOP: a.39.1.10 PDB: 1h4b_A
Length = 86
Score = 31.8 bits (73), Expect = 0.007
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 44 QEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDD 88
+ IF +D NGDG I+ E+ + + + LG ++
Sbjct: 10 IADRERIFKRFDTNGDGKISSSELGDALKT----LGSVTPDEVRR 50
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix,
structural genomics, protein structure initiative; NMR
{Arabidopsis thaliana} SCOP: a.39.1.5
Length = 67
Score = 31.3 bits (72), Expect = 0.008
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 47 LQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+ +F +D N DG ++ E EV +
Sbjct: 3 AKRVFEKFDKNKDGKLSLDEFREVALAF 30
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 32.7 bits (75), Expect = 0.010
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFSE 101
++L IF D NGDG + + E+ E + M G++ +D + V+ VD++
Sbjct: 335 KELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASM-LDASAVEHEVDQVLDA 390
Score = 27.7 bits (62), Expect = 0.56
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 44 QEKLQWIFGLYDLNGDGLITKKEMEEV 70
+E+L+ F ++D + G I+ E+ +
Sbjct: 417 RERLERAFRMFDSDNSGKISSTELATI 443
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 32.3 bits (74), Expect = 0.011
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 30 DFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73
+F+ + +E+L F +D +G G IT +E+ +
Sbjct: 108 EFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLFGV 151
Score = 31.5 bits (72), Expect = 0.028
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFSE 101
++L IF D NGDG + +KE+ E + G + +D + ++A VD I
Sbjct: 40 KELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVS-DLDSSQIEAEVDHILQS 95
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 32.4 bits (74), Expect = 0.013
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFSE 101
++L IF D NGDG + ++E+ + Y L D +++ VD I
Sbjct: 346 KELTDIFRHIDKNGDGQLDRQELIDG----YSKLSGEEVAVFDLPQIESEVDAILGA 398
Score = 28.1 bits (63), Expect = 0.48
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 44 QEKLQWIFGLYDLNGDGLITKKEMEEV 70
++KL+ F +D +G+G I+ E+ V
Sbjct: 425 KDKLESAFQKFDQDGNGKISVDELASV 451
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 31.7 bits (73), Expect = 0.014
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 47 LQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI-EPQIDD 88
+ +F D+NGDG ++ +E++ V+ E +
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSK----KRAIKNEQLLQL 40
Score = 31.0 bits (71), Expect = 0.024
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 29 QDFLGILSRVSRGSV---QEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+F + + + L+ ++ L D++GDG +TK+E+
Sbjct: 56 NEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKH 104
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 30.5 bits (70), Expect = 0.017
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 39 SRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+R +++ LQ F +D +GDG IT E+ + +
Sbjct: 1 ARAGLED-LQVAFRAFDQDGDGHITVDELRRAMAGL 35
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 31.8 bits (72), Expect = 0.017
Identities = 9/41 (21%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 45 EKLQWIF-GLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEP 84
+K+++ F D+N DG I + E+++T ++ ++
Sbjct: 8 QKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSD 48
Score = 29.9 bits (67), Expect = 0.084
Identities = 7/32 (21%), Positives = 18/32 (56%)
Query: 43 VQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
Q ++ ++F D++GDG++ +E + +
Sbjct: 103 CQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNF 134
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 31.8 bits (72), Expect = 0.018
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 30 DFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+FL + +L +F D +G+ L+ ++E + V +
Sbjct: 115 EFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKL 159
Score = 30.2 bits (68), Expect = 0.079
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFSE 101
++ +F +D N G + E+ + + ++ D T +A
Sbjct: 48 QRRIELFKKFDKNETGKLCYDEVYSGCLEVLKL--DEFTSRVRDITKRAFDKSRTLG 102
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 31.0 bits (71), Expect = 0.019
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 44 QEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + F ++D +G G I+ KE+ V+ LG+N
Sbjct: 19 IAEFKAAFDMFDADGGGDISTKELGTVMRM----LGQN 52
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 31.5 bits (72), Expect = 0.020
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+ + +F D N +G ++ +E+ V+ S+
Sbjct: 39 KYINELFYKLDTNHNGSLSHREIYTVLASV 68
Score = 29.6 bits (67), Expect = 0.13
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 30 DFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEV 70
+F+ R L+ F D + DG I+K ++ +
Sbjct: 94 EFMAGCYRWKNIE-STFLKAAFNKIDKDEDGYISKSDIVSL 133
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 31.3 bits (72), Expect = 0.025
Identities = 8/39 (20%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 51 FGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI-EPQIDD 88
F + D++ DG ++K++++ + + LGR + ++
Sbjct: 24 FSMIDVDRDGFVSKEDIKAI----SEQLGRAPDDKELTA 58
Score = 29.8 bits (68), Expect = 0.084
Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 29 QDFLGILSR-VSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDML 78
FL I S +S +E ++ F ++D + + +++++ ++ D
Sbjct: 70 TMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNF 120
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 30.9 bits (71), Expect = 0.029
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 51 FGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI-EPQIDD 88
F + D N DG I K+++ ++ +G+N + ++
Sbjct: 13 FNMIDQNRDGFIDKEDLHDM----LASMGKNPTDEYLEG 47
Score = 29.0 bits (66), Expect = 0.13
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 29 QDFLGILSRVSRGSVQEK-LQWIFGLYDLNGDGLITKKEMEEVVTSI 74
FL + G+ E ++ F +D G I + + E++T++
Sbjct: 59 TMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTM 105
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 31.4 bits (71), Expect = 0.030
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 29 QDFLGILSR--VSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDML 78
+FL +++R S +E + F ++D +G+G I+ E+ V+T++ + L
Sbjct: 368 PEFLTMMARKMKDTDSEEEIRE-AFRVFDKDGNGYISAAELRHVMTNLGEKL 418
Score = 29.9 bits (67), Expect = 0.12
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 44 QEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI-EPQIDDTTVKAHVDK 97
+ + F L+D +GDG IT KE+ V+ S LG+N E ++ D + VD
Sbjct: 311 IAEFKEAFSLFDKDGDGTITTKELGTVMRS----LGQNPTEAELQD--MINEVDA 359
Score = 24.5 bits (53), Expect = 8.4
Identities = 3/39 (7%), Positives = 15/39 (38%)
Query: 38 VSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYD 76
+ ++ E ++ + T+ E++ ++ +
Sbjct: 240 FFKSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVN 278
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 29.9 bits (68), Expect = 0.036
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 44 QEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
Q++ + F L+D + D +T +E+ V+ ++
Sbjct: 13 QQEYKEAFQLFDKDNDNKLTAEELGTVMRAL 43
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 30.6 bits (69), Expect = 0.054
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 43 VQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+ + + ++F + D +GD +I K E V S
Sbjct: 107 LTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSY 138
Score = 30.2 bits (68), Expect = 0.065
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 44 QEKLQWIF-GLYDLNGDGLITKKEMEEVVTSIYDMLG 79
+ K+ +F YD N DG+I + E + I ++
Sbjct: 11 RNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHS 47
Score = 24.0 bits (52), Expect = 9.0
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 41 GSVQEKLQWIFGLYDLNGDGLITKKEMEEVVT 72
G + F G ++T++ + T
Sbjct: 139 GIPKSDCDAAFDTLSDGGKTMVTREIFARLWT 170
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 30.2 bits (69), Expect = 0.056
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 29 QDFLGILSRVSRGSVQEKLQWI---FGLYDLNGDGLITKKEMEEVVTSI 74
+ FL +L+R + + + F ++D + G+I E+ V+TS+
Sbjct: 57 EQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSL 105
Score = 29.4 bits (67), Expect = 0.11
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 51 FGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
F L+D +G G I K + +++ + G+N
Sbjct: 11 FSLFDRHGTGRIPKTSIGDLLRA----CGQN 37
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle;
rigor-like, squid, contractIle protein; 2.60A
{Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B*
3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 30.2 bits (69), Expect = 0.057
Identities = 8/39 (20%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 51 FGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI-EPQIDD 88
F + D + DG I ++++++ + LGR + +++
Sbjct: 22 FTMIDQDRDGFIGMEDLKDM----FSSLGRVPPDDELNA 56
Score = 28.3 bits (64), Expect = 0.30
Identities = 10/51 (19%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 29 QDFLGILSRVSRGS-VQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDML 78
FL + G+ ++ L+ F ++D +G G I + +++++ ++ D
Sbjct: 68 TAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNF 118
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 30.3 bits (69), Expect = 0.060
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 30 DFLGILSRVSRGSVQ---EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQI 86
FL +L V++ Q E F ++D G+G + E+ V+T+ LG + +
Sbjct: 69 TFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTT----LGEKMTEEE 124
Query: 87 DDTTVKAHVDK 97
+T + H D
Sbjct: 125 VETVLAGHEDS 135
Score = 27.9 bits (63), Expect = 0.37
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
E+ + F L+D GDG I + +V+ + LG+N
Sbjct: 10 EEFKEAFELFDRVGDGKILYSQCGDVMRA----LGQN 42
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 30.2 bits (69), Expect = 0.066
Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 44 QEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+++Q F ++D + DG ++ +E+ + S LG+N
Sbjct: 4 ADQIQECFQIFDKDNDGKVSIEELGSALRS----LGKN 37
Score = 29.8 bits (68), Expect = 0.085
Identities = 7/47 (14%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 30 DFLGILSRV--SRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
F + + + +++ F D G+G I + E+ +++ ++
Sbjct: 59 TFKTVYRKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNL 105
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 29.8 bits (68), Expect = 0.071
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 29 QDFLGILSR-----VSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
F I +R V+ +Q++L+ F LYD G+G I+ M E++ +
Sbjct: 70 DSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAEL 120
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 29.9 bits (68), Expect = 0.072
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 29 QDFLGILSRVSR---GSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
++ L I +S G+ ++ F +D G GLI+ E+ V+ +
Sbjct: 66 EEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKML 114
Score = 25.6 bits (57), Expect = 2.6
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 45 EKLQWIFGLYDL--NGDGLITKKEMEEVVTSIYDMLGRN 81
E+++ +F L+D DG + ++ +++ LG N
Sbjct: 9 EEVREVFDLFDFWDGRDGDVDAAKVGDLLRC----LGMN 43
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 29.4 bits (67), Expect = 0.073
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI-EPQIDD 88
L+ +F + D + G IT E+++ + +G + E +I D
Sbjct: 23 GGLKELFKMIDTDNSGTITFDELKDGLKR----VGSELMESEIKD 63
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 29.1 bits (66), Expect = 0.074
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 44 QEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+E++ F ++D NGDG+I E + ++ +
Sbjct: 7 EEEILRAFKVFDANGDGVIDFDEFKFIMQKV 37
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 30.0 bits (68), Expect = 0.079
Identities = 13/60 (21%), Positives = 26/60 (43%)
Query: 29 QDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDD 88
++FL L + + + F D +GDG++T ++ V + R+ E D+
Sbjct: 93 EEFLRALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDE 152
Score = 27.3 bits (61), Expect = 0.77
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 34 ILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
LSR + G +Q L F D +G + E + + +
Sbjct: 28 CLSRGASG-IQG-LARFFRQLDRDGSRSLDADEFRQGLAKL 66
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 29.9 bits (68), Expect = 0.088
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 29 QDFLGILSR----VSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
++FL ++ R ++G +E+L F ++D N DG I +E+ E++ +
Sbjct: 76 EEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRAT 125
Score = 27.5 bits (62), Expect = 0.49
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 47 LQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI-EPQIDD 88
+ F ++D +G G I+ KE+ V+ LG+N + ++D
Sbjct: 22 FKAAFDMFDADGGGDISTKELGTVMRM----LGQNPTKEELDA 60
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 29.1 bits (66), Expect = 0.088
Identities = 8/31 (25%), Positives = 20/31 (64%)
Query: 44 QEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+E+L+ F ++D + +G I+ E+ V+ ++
Sbjct: 8 EEELKEAFKVFDKDQNGYISASELRHVMINL 38
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 29.3 bits (66), Expect = 0.095
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 51 FGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ +DLNG+G I ++ ++ LG
Sbjct: 38 YMEFDLNGNGDIDIMSLKRMLEK----LGVP 64
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 29.4 bits (67), Expect = 0.10
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 34 ILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73
+L+ + ++L+ F +D NGDG I+ E+ E + +
Sbjct: 77 LLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRA 116
Score = 28.7 bits (65), Expect = 0.19
Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 47 LQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI-EPQIDD 88
L+ F +D + DG I +++ + + +G E ++ +
Sbjct: 13 LREAFREFDKDKDGYINCRDLGNCMRT----MGYMPTEMELIE 51
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 29.5 bits (67), Expect = 0.10
Identities = 6/52 (11%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 29 QDFLGILSRVSR------GSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
G++ + + E F ++D G ++ ++ ++T +
Sbjct: 61 DQITGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGL 112
Score = 27.9 bits (63), Expect = 0.43
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 51 FGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDK 97
F L+D G G I K + + + + +G N Q+ + A
Sbjct: 10 FTLFDKKGQGAIAKDSLGDYLRA----IGYNPTNQLVQDIINADSSL 52
>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure,
asparaginase 1 family, GATD subfamily, lyase; 3.00A
{Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Length = 633
Score = 29.9 bits (67), Expect = 0.11
Identities = 8/60 (13%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 50 IFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIE--------PQIDDTTVKAHVDKIFSE 101
I + L +G I K+ EE+ + ++ + + V ++++ +
Sbjct: 527 IREAFQLYLEGKIAKEAFEEIFKELARNPSKSAREVAEEKGLTLLSEEEVTRIIEEVIQQ 586
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 29.4 bits (67), Expect = 0.11
Identities = 9/47 (19%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 29 QDFLGILSR-VSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
DF ++ + + ++++ F L+D + G I+ K + V +
Sbjct: 79 DDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKEL 125
Score = 27.9 bits (63), Expect = 0.45
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 51 FGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI-EPQIDD 88
F L+D+N DG + E++ + + LG + + +I D
Sbjct: 29 FSLFDMNNDGFLDYHELKVAMKA----LGFELPKREILD 63
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 29.5 bits (67), Expect = 0.12
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 29 QDFLGILSRVSRGSVQEK-LQWIFGLYDLNGDGLITKKEMEEVVTSI 74
FL + +G+ E + F + D +G G I K +EE++T+
Sbjct: 78 TVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTG 124
Score = 29.1 bits (66), Expect = 0.14
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 51 FGLYDLNGDGLITKKEMEEVVTS 73
F + D N DG+I K ++ E +
Sbjct: 31 FTVIDQNADGIIDKDDLRETFAA 53
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 29.4 bits (67), Expect = 0.12
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 29 QDFLGILSR----VSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+FL ++ R S+G +E+L +F ++D N DG I +E++ ++ +
Sbjct: 75 DEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQAT 124
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 29.5 bits (66), Expect = 0.13
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
E + + +DLNG+G I ++ ++ +
Sbjct: 48 EAFKVKYMEFDLNGNGDIDIMSLKRMLEKL 77
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 29.5 bits (67), Expect = 0.13
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 29 QDFLGILSR-VSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
++FL +++ + +E++ F L+D + G IT K++ V +
Sbjct: 84 EEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKEL 130
Score = 27.2 bits (61), Expect = 0.73
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 51 FGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI-EPQIDD 88
F L+D +G G I KE++ + + LG + +I
Sbjct: 34 FDLFDTDGSGTIDAKELKVAMRA----LGFEPKKEEIKK 68
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 29.4 bits (67), Expect = 0.13
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 29 QDFLGILSR-VSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
DFL ++++ +S +E++ F L+D + G I+ K ++ V +
Sbjct: 62 GDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKEL 108
Score = 27.4 bits (62), Expect = 0.54
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 47 LQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI-EPQIDD 88
++ F L+D +G G I KE++ + + LG + +I
Sbjct: 8 IREAFDLFDADGTGTIDVKELKVAMRA----LGFEPKKEEIKK 46
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 29.0 bits (66), Expect = 0.14
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 29 QDFLGILSRVSRGSVQEKLQWI---FGLYDLNGDGLITKKEMEEVVTSI 74
++FL +L + Q + ++D G+G + E+ V+ ++
Sbjct: 66 EEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATL 114
Score = 28.3 bits (64), Expect = 0.30
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 51 FGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
F L+D GD IT ++ ++ + LG+N
Sbjct: 14 FLLFDRTGDAKITASQVGDIARA----LGQN 40
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 29.1 bits (66), Expect = 0.16
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 29 QDFLGILSRVSRGS-VQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+ +L LS E+L +F +D N G +TK +M+ ++T+
Sbjct: 67 EQYLEYLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTW 113
Score = 27.9 bits (63), Expect = 0.42
Identities = 4/31 (12%), Positives = 7/31 (22%), Gaps = 4/31 (12%)
Query: 51 FGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + G I+ LG
Sbjct: 21 IYFNEKSSGGKISIDNASYNARK----LGLA 47
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 29.1 bits (66), Expect = 0.17
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
Q +F YD + G+I K E+++ ++
Sbjct: 74 TDWQNVFRTYDRDNSGMIDKNELKQALSGF 103
Score = 25.7 bits (57), Expect = 3.0
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 44 QEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
Q L +F D + G+I+ E+++ +++
Sbjct: 6 QSFLWNVFQRVDKDRSGVISDTELQQALSNG 36
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule
2, metal-binding protein; 2.15A {Homo sapiens} PDB:
2jjz_B 2vtg_A
Length = 150
Score = 29.1 bits (65), Expect = 0.18
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
+ + +DLN +G I ++ ++ LG
Sbjct: 50 TAFKEKYMEFDLNNEGEIDLMSLKRMMEK----LGVP 82
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 29.0 bits (66), Expect = 0.18
Identities = 12/47 (25%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 29 QDFLGILSR-VSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+FL +++R + +E+++ F ++D +G+G I+ E+ V+T++
Sbjct: 67 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL 113
Score = 27.5 bits (62), Expect = 0.58
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 47 LQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI-EPQIDD 88
+ F L+D +GDG IT KE+ V+ S LG+N E ++ D
Sbjct: 13 FKEAFSLFDKDGDGTITTKELGTVMRS----LGQNPTEAELQD 51
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 27.9 bits (63), Expect = 0.18
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 51 FGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI-EPQIDD 88
F L+D N G I E++ + + LG ++ +P+I +
Sbjct: 13 FDLFDTNKTGSIDYHELKVAMRA----LGFDVKKPEILE 47
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 28.7 bits (65), Expect = 0.19
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 29 QDFLGILSRVSRGS--VQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
++FL + F +D G G I+ E+ V+T++
Sbjct: 66 EEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTAL 113
Score = 24.4 bits (54), Expect = 6.2
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 6/33 (18%)
Query: 51 FGLYDL--NGDGLITKKEMEEVVTSIYDMLGRN 81
F L+D DG + ++ +V LG N
Sbjct: 15 FELFDFWDGRDGAVDAFKLGDVCRC----LGIN 43
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 28.6 bits (65), Expect = 0.20
Identities = 10/47 (21%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 29 QDFLGILSR-VSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+FL ++ R + + + ++ L+ F +D G G I K +++ + ++
Sbjct: 62 PEFLSMMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLNL 108
Score = 27.8 bits (63), Expect = 0.45
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 51 FGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI-EPQIDD 88
F L+D G ITK+ ++ V+ G + ++
Sbjct: 12 FELFDSERTGFITKEGLQTVLKQ----FGVRVEPAAFNE 46
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis
semifasciata} SCOP: a.39.1.4
Length = 109
Score = 27.9 bits (63), Expect = 0.28
Identities = 8/38 (21%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI 82
+++ +F + D + G I ++E++ V+ + GR++
Sbjct: 41 AQVKEVFEILDKDQSGFIEEEELKGVLKG-FSAHGRDL 77
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 28.2 bits (64), Expect = 0.30
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 29 QDFLGILSR-VSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+FL ++SR + +++L F ++D NGDGLI+ E++ V+TSI
Sbjct: 67 SEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSI 113
Score = 27.4 bits (62), Expect = 0.62
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 51 FGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
F L+D + G I+ E+ V+ S LG +
Sbjct: 17 FALFDKDNSGSISASELATVMRS----LGLS 43
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 28.4 bits (64), Expect = 0.32
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
++ F D +GDG + E+ + S
Sbjct: 93 LSMREGFRKRDSSGDGRLDSNEVRAALLSS 122
Score = 25.7 bits (57), Expect = 2.8
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 44 QEKLQWIFGLYDLNGDGLITKKEMEEVVTS 73
++L F D +G G I+ E+ ++S
Sbjct: 26 NQELMEWFRAVDTDGSGAISVPELNAALSS 55
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand,
acetylation, calcium, metal binding protein; 1.95A
{Gallus gallus} PDB: 2kqy_A
Length = 109
Score = 27.2 bits (61), Expect = 0.52
Identities = 6/29 (20%), Positives = 19/29 (65%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTS 73
++++ +FG+ D + G I ++E++ + +
Sbjct: 42 DQIKKVFGILDQDKSGFIEEEELQLFLKN 70
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 27.4 bits (62), Expect = 0.52
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 29 QDFLGILSR-VSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+FL +++R + +E+L F ++D +G+GLI+ E+ V+T++
Sbjct: 66 PEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNL 112
Score = 27.4 bits (62), Expect = 0.55
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Query: 51 FGLYDLNGDGLITKKEMEEVVTSIYDMLGRN 81
F L+D +GDG IT KE+ V+ S LG+N
Sbjct: 16 FALFDKDGDGTITTKELGTVMRS----LGQN 42
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform
A; EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 27.1 bits (60), Expect = 0.56
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 34 ILSRVSRGSVQEK--LQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDD 88
IL+R+ + + F +D I+++E + +L + Q D
Sbjct: 11 ILARLHKAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILT---DEQFDR 64
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 27.1 bits (61), Expect = 0.57
Identities = 5/44 (11%), Positives = 17/44 (38%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDD 88
+ ++ F + D + G I + E++ + + + +
Sbjct: 41 DDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKA 84
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 27.2 bits (61), Expect = 0.61
Identities = 5/45 (11%), Positives = 16/45 (35%)
Query: 44 QEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDD 88
+ ++ F + D + G I + E++ + + +
Sbjct: 41 ADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKA 85
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 26.4 bits (59), Expect = 0.93
Identities = 10/54 (18%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 29 QDFLGILSRVSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNI 82
+ F ++ + ++ +F D + G I ++E++ V+ S + GR++
Sbjct: 28 KKFFALVGL--KAMSANDVKKVFKAIDADASGFIEEEELKFVLKS-FAADGRDL 78
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 26.9 bits (60), Expect = 0.97
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 29 QDFLGILSR--VSRGSVQEKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+D L +++ V E L F L LIT + + +
Sbjct: 23 EDMLPVMAEKMDVEEFVSE-LCKGFSLLADPERHLITAESLRRNSGIL 69
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 26.5 bits (59), Expect = 1.1
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDD 88
+L+ IF + D + G I + E++ + +
Sbjct: 41 SQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKT 84
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 26.1 bits (58), Expect = 1.4
Identities = 6/44 (13%), Positives = 15/44 (34%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDD 88
+++ IF D + G + E++ + E +
Sbjct: 41 SQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKS 84
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA
complex; 3.15A {Methanothermobacterthermautotrophicus}
SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Length = 619
Score = 26.3 bits (58), Expect = 1.7
Identities = 7/62 (11%), Positives = 20/62 (32%), Gaps = 13/62 (20%)
Query: 50 IFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEP----------QIDDTTVKAHVDKIF 99
+ L G I+K + ++V M + + + +++ + +I
Sbjct: 516 LRDAIKLLEVGKISKDALRDIVA---CMADEGLAAEDAARKLNLLLLAEDEIESIIQEIV 572
Query: 100 SE 101
Sbjct: 573 EG 574
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A
1rjv_A 1rk9_A 1g33_A
Length = 109
Score = 25.7 bits (57), Expect = 1.7
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSIYDM 77
+ ++ +F + D + G I + E+ ++
Sbjct: 41 DDVKKVFHILDKDKSGFIEEDELGSILKGFSSD 73
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 25.4 bits (56), Expect = 3.3
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+ F D +G G + E+ + + +
Sbjct: 70 NAWKENFMTVDQDGSGTVEHHELRQAIGLM 99
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein,
putative; periplasmic iron-binding protein, structural
genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP:
c.92.2.4
Length = 346
Score = 25.4 bits (55), Expect = 3.7
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 7/27 (25%)
Query: 74 IYDMLGRNIEPQIDDTTVKAHVDKIFS 100
D+LGR + + ++V++I +
Sbjct: 12 HXDLLGREV-------EIPSNVNRIVA 31
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 24.7 bits (54), Expect = 4.1
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 44 QEKLQWIFGLYDLNGDGLITKKE 66
L I+ L D G ++K +
Sbjct: 43 STLLAHIWSLCDTKDCGKLSKDQ 65
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 24.7 bits (54), Expect = 5.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 44 QEKLQWIFGLYDLNGDGLITKKE 66
+L +I+ L D + DG +T E
Sbjct: 55 IPELSYIWELSDADCDGALTLPE 77
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 24.7 bits (54), Expect = 6.5
Identities = 5/30 (16%), Positives = 16/30 (53%)
Query: 45 EKLQWIFGLYDLNGDGLITKKEMEEVVTSI 74
+ F +D + G + +E+++ +T++
Sbjct: 103 NGWRQHFISFDTDRSGTVDPQELQKALTTM 132
>1qwd_A Outer membrane lipoprotein BLC; bacterial lipocalin, lipid binding
protein; 1.75A {Escherichia coli} SCOP: b.60.1.1 PDB:
2aco_A* 3mbt_A
Length = 177
Score = 24.7 bits (53), Expect = 6.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 17 YNYLLYLVISCMQDFLGILSR 37
Y LV +D+L ILSR
Sbjct: 123 REYRHALVCGPDRDYLWILSR 143
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis
complex; NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 23.9 bits (52), Expect = 6.8
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 44 QEKLQWIFGLYDLNGDGLITKKE 66
+L I+ L D + DG +T E
Sbjct: 42 ILELSHIWELSDFDKDGALTLDE 64
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 23.7 bits (52), Expect = 7.9
Identities = 10/60 (16%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 44 QEKLQWIFGLYDLNGD--GLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKAHVDKIFSE 101
E+++ F ++ I+K+E++ V+ + LG ++ + +D++ E
Sbjct: 4 PEEIKGAFEVFAAKEGDPNQISKEELKLVMQT----LGPSLLKGMST------LDEMIEE 53
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR
initiative, midwest center for structural genomics,
MCSG, U function; HET: MSE; 1.50A {Enterococcus
faecalis} SCOP: a.275.1.1
Length = 83
Score = 23.7 bits (51), Expect = 8.2
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 50 IFGLYDLNGDGLITKKEMEEVVTSIYDMLGRNIEPQIDDTTVKA 93
I +++ NG GL++ K M + I D + + +
Sbjct: 4 IRSIWENNGFGLMSSKTMTDFDYWISDFEKIGASQKEAEQLIVK 47
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus
thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A
Length = 237
Score = 24.3 bits (53), Expect = 9.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 71 VTSIYDMLGRNIEPQIDDTTVKAHVDKIF 99
VTS+ +LGR + + V A ++F
Sbjct: 197 VTSLEKLLGRKVPMEEAKARVVAAFAEVF 225
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.143 0.416
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,528,805
Number of extensions: 78725
Number of successful extensions: 464
Number of sequences better than 10.0: 1
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 237
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)