BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3840
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 7 NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
+G+ + TG +G R+W G+L + L H+ PI ++KWNK G +I+S V+ TI+W+
Sbjct: 119 DGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNV 178
Query: 67 ASGQCEQQFSF------------HSAP---ALDVDWQSNTSFASCSTDQHIHVCKLHSDK 111
SG Q F HS +DV+W + F I V ++
Sbjct: 179 ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT 238
Query: 112 PVKSFEGH 119
P GH
Sbjct: 239 PTGKLIGH 246
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%)
Query: 36 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFAS 95
H GPI L++N +LSA D T IW +G + F HS + W + S
Sbjct: 246 HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVIS 305
Query: 96 CSTDQHIHVCKL 107
CS D + + L
Sbjct: 306 CSMDGSVRLWSL 317
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7 NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+GS + + SYDG RIW T+ G LK+ + P+ +K++ G YIL+A +D T +W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
D + G+C + ++ H + + + S S D +++ L + + V+ +GHT
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Query: 121 RV 122
V
Sbjct: 283 DV 284
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 7 NGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
NG +LA+ S D +IW + DG + T+ HK I + W+ N ++SA DKT IWD
Sbjct: 37 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT 120
+SG+C + HS ++ ++ S S D+ + + + + +K+ H+
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 9 SFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
+ + +GS+D RIW G TL H P+ A+ +N+ G+ I+S+ D IWD A
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 68 SGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIHVCKLHSDKPVKSFEGHTRVYY 124
SGQC + P + V + N + +T D + + K +K++ GH Y
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 28 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 87
+L TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 17 ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 88 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
S+++ S S D+ + + + S K +K+ +GH+ +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+ + L + S D +IW S G TL H +F +N + N I+S D++ IWD
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 66 AASGQCEQQFSFHSAPA 82
+G C + HS P
Sbjct: 139 VKTGMCLKTLPAHSDPV 155
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7 NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+GS + + SYDG RIW T+ G LK+ + P+ +K++ G YIL+A +D T +W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
D + G+C + ++ H + + + S S D +++ L + + V+ +GHT
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Query: 121 RV 122
V
Sbjct: 283 DV 284
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 7 NGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
NG +LA+ S D +IW + DG + T+ HK I + W+ N ++SA DKT IWD
Sbjct: 37 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT 120
+SG+C + HS ++ ++ S S D+ + + + + K +K+ H+
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 9 SFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
+ + +GS+D RIW G TL H P+ A+ +N+ G+ I+S+ D IWD A
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 68 SGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIHVCKLHSDKPVKSFEGHTRVYY 124
SGQC + P + V + N + +T D + + K +K++ GH Y
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 28 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 87
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 88 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
S+++ S S D+ + + + S K +K+ +GH+ +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+ + L + S D +IW S G TL H +F +N + N I+S D++ IWD
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF 93
+G+C + HS P V + + S
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7 NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+GS + + SYDG RIW T+ G LK+ + P+ +K++ G YIL+A +D T +W
Sbjct: 177 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 236
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
D + G+C + ++ H + + + S S D +++ L + + V+ +GHT
Sbjct: 237 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 296
Query: 121 RV 122
V
Sbjct: 297 DV 298
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 7 NGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
NG +LA+ S D +IW + DG + T+ HK I + W+ N ++SA DKT IWD
Sbjct: 51 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 110
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT 120
+SG+C + HS ++ ++ S S D+ + + + + K +K+ H+
Sbjct: 111 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 166
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 9 SFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
+ + +GS+D RIW G TL H P+ A+ +N+ G+ I+S+ D IWD A
Sbjct: 137 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 196
Query: 68 SGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIHVCKLHSDKPVKSFEGHTRVYY 124
SGQC + P + V + N + +T D + + K +K++ GH Y
Sbjct: 197 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 255
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 28 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 87
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 31 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 90
Query: 88 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
S+++ S S D+ + + + S K +K+ +GH+ +
Sbjct: 91 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 128
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+ + L + S D +IW S G TL H +F +N + N I+S D++ IWD
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 152
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF 93
+G+C + HS P V + + S
Sbjct: 153 VKTGKCLKTLPAHSDPVSAVHFNRDGSL 180
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7 NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+GS + + SYDG RIW T+ G LK+ + P+ +K++ G YIL+A +D T +W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
D + G+C + ++ H + + + S S D +++ L + + V+ +GHT
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Query: 121 RV 122
V
Sbjct: 283 DV 284
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 7 NGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
NG +LA+ S D +IW + DG + T+ HK I + W+ N ++SA DKT IWD
Sbjct: 37 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT 120
+SG+C + HS ++ ++ S S D+ + + + + K +K+ H+
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 9 SFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
+ + +GS+D RIW G TL H P+ A+ +N+ G+ I+S+ D IWD A
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 68 SGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIHVCKLHSDKPVKSFEGHTRVYY 124
SGQC + P + V + N + +T D + + K +K++ GH Y
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 28 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 87
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 88 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
S+++ S S D+ + + + S K +K+ +GH+ +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+ + L + S D +IW S G TL H +F +N + N I+S D++ IWD
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF 93
+G+C + HS P V + + S
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7 NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+GS + + SYDG RIW T+ G LK+ + P+ +K++ G YIL+A +D T +W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
D + G+C + ++ H + + + S S D +++ L + + V+ +GHT
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Query: 121 RV 122
V
Sbjct: 283 DV 284
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 7 NGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
NG +LA S D +IW + DG + T+ HK I + W+ N ++SA DKT IWD
Sbjct: 37 NGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT 120
+SG+C + HS ++ ++ S S D+ + + + + K +K+ H+
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 9 SFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
+ + +GS+D RIW G TL H P+ A+ +N+ G+ I+S+ D IWD A
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 68 SGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIHVCKLHSDKPVKSFEGHTRVYY 124
SGQC + P + V + N + +T D + + K +K++ GH Y
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 28 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 87
+LK TL H + ++K++ G ++ ++ DK IW A G+ E+ S H DV W
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 88 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
S+++ S S D+ + + + S K +K+ +GH+ +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+ + L + S D +IW S G TL H +F +N + N I+S D++ IWD
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF 93
+G+C + HS P V + + S
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7 NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+GS + + SYDG RIW T+ G LK+ + P+ +K++ G YIL+A +D T +W
Sbjct: 156 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 215
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
D + G+C + ++ H + + + S S D +++ L + + V+ +GHT
Sbjct: 216 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 275
Query: 121 RV 122
V
Sbjct: 276 DV 277
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 7 NGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
NG +LA+ S D +IW + DG + T+ HK I + W+ N ++SA DKT IWD
Sbjct: 30 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 89
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT 120
+SG+C + HS ++ ++ S S D+ + + + + K +K+ H+
Sbjct: 90 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 145
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 9 SFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
+ + +GS+D RIW G TL H P+ A+ +N+ G+ I+S+ D IWD A
Sbjct: 116 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 175
Query: 68 SGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIHVCKLHSDKPVKSFEGHTRVYY 124
SGQC + P + V + N + +T D + + K +K++ GH Y
Sbjct: 176 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 234
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 28 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 87
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 10 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 69
Query: 88 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
S+++ S S D+ + + + S K +K+ +GH+ +
Sbjct: 70 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 107
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+ + L + S D +IW S G TL H +F +N + N I+S D++ IWD
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF 93
+G+C + HS P V + + S
Sbjct: 132 VKTGKCLKTLPAHSDPVSAVHFNRDGSL 159
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7 NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+GS + + SYDG RIW T+ G LK+ + P+ +K++ G YIL+A +D T +W
Sbjct: 159 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 218
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
D + G+C + ++ H + + + S S D +++ L + + V+ +GHT
Sbjct: 219 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 278
Query: 121 RV 122
V
Sbjct: 279 DV 280
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 7 NGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
NG +LA+ S D +IW + DG + T+ HK I + W+ N ++SA DKT IWD
Sbjct: 33 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 92
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT 120
+SG+C + HS ++ ++ S S D+ + + + + K +K+ H+
Sbjct: 93 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 148
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 9 SFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
+ + +GS+D RIW G TL H P+ A+ +N+ G+ I+S+ D IWD A
Sbjct: 119 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 178
Query: 68 SGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIHVCKLHSDKPVKSFEGHTRVYY 124
SGQC + P + V + N + +T D + + K +K++ GH Y
Sbjct: 179 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 237
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 28 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 87
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 13 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 72
Query: 88 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
S+++ S S D+ + + + S K +K+ +GH+ +
Sbjct: 73 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 110
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+ + L + S D +IW S G TL H +F +N + N I+S D++ IWD
Sbjct: 75 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 134
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF 93
+G+C + HS P V + + S
Sbjct: 135 VKTGKCLKTLPAHSDPVSAVHFNRDGSL 162
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7 NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+GS + + SYDG RIW T+ G LK+ + P+ +K++ G YIL+A +D T +W
Sbjct: 161 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 220
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
D + G+C + ++ H + + + S S D +++ L + + V+ +GHT
Sbjct: 221 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 280
Query: 121 RV 122
V
Sbjct: 281 DV 282
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 7 NGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
NG +LA+ S D +IW + DG + T+ HK I + W+ N ++SA DKT IWD
Sbjct: 35 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 94
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT 120
+SG+C + HS ++ ++ S S D+ + + + + K +K+ H+
Sbjct: 95 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 150
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 9 SFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
+ + +GS+D RIW G TL H P+ A+ +N+ G+ I+S+ D IWD A
Sbjct: 121 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 180
Query: 68 SGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIHVCKLHSDKPVKSFEGHTRVYY 124
SGQC + P + V + N + +T D + + K +K++ GH Y
Sbjct: 181 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 239
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 28 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 87
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 15 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 74
Query: 88 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
S+++ S S D+ + + + S K +K+ +GH+ +
Sbjct: 75 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 112
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+ + L + S D +IW S G TL H +F +N + N I+S D++ IWD
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF 93
+G+C + HS P V + + S
Sbjct: 137 VKTGKCLKTLPAHSDPVSAVHFNRDGSL 164
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7 NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+GS + + SYDG RIW T+ G LK+ + P+ +K++ G YIL+A +D T +W
Sbjct: 165 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 224
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
D + G+C + ++ H + + + S S D +++ L + + V+ +GHT
Sbjct: 225 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 284
Query: 121 RV 122
V
Sbjct: 285 DV 286
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 7 NGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
NG +LA+ S D +IW + DG + T+ HK I + W+ N ++SA DKT IWD
Sbjct: 39 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 98
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT 120
+SG+C + HS ++ ++ S S D+ + + + + K +K+ H+
Sbjct: 99 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 154
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 9 SFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
+ + +GS+D RIW G TL H P+ A+ +N+ G+ I+S+ D IWD A
Sbjct: 125 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 184
Query: 68 SGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIHVCKLHSDKPVKSFEGHTRVYY 124
SGQC + P + V + N + +T D + + K +K++ GH Y
Sbjct: 185 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 243
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 28 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 87
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 19 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 78
Query: 88 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
S+++ S S D+ + + + S K +K+ +GH+ +
Sbjct: 79 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 116
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+ + L + S D +IW S G TL H +F +N + N I+S D++ IWD
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 140
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF 93
+G+C + HS P V + + S
Sbjct: 141 VKTGKCLKTLPAHSDPVSAVHFNRDGSL 168
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7 NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+GS + + SYDG RIW T+ G LK+ + P+ +K++ G YIL+A +D T +W
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
D + G+C + ++ H + + + S S D +++ L + + V+ +GHT
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 279
Query: 121 RV 122
V
Sbjct: 280 DV 281
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 7 NGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
NG +LA+ S D +IW + DG + T+ HK I + W+ N ++SA DKT IWD
Sbjct: 34 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT 120
+SG+C + HS ++ ++ S S D+ + + + + K +K+ H+
Sbjct: 94 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 9 SFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
+ + +GS+D RIW G TL H P+ A+ +N+ G+ I+S+ D IWD A
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 68 SGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIHVCKLHSDKPVKSFEGHTRVYY 124
SGQC + P + V + N + +T D + + K +K++ GH Y
Sbjct: 180 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 28 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 87
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 88 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
S+++ S S D+ + + + S K +K+ +GH+ +
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 111
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+ + L + S D +IW S G TL H +F +N + N I+S D++ IWD
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 66 AASGQCEQQFSFHSAPA 82
+G+C + HS P
Sbjct: 136 VKTGKCLKTLPAHSDPV 152
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7 NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+GS + + SYDG RIW T+ G LK+ + P+ +K++ G YIL+A +D T +W
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
D + G+C + ++ H + + + S S D +++ L + + V+ +GHT
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 279
Query: 121 RV 122
V
Sbjct: 280 DV 281
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 7 NGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
NG +LA+ S D +IW + DG + T+ HK I + W+ N ++SA DKT IWD
Sbjct: 34 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT 120
+SG+C + HS ++ ++ S S D+ + + + + K +K+ H+
Sbjct: 94 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 9 SFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
+ + +GS+D RIW G TL H P+ A+ +N+ G+ I+S+ D IWD A
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 68 SGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIHVCKLHSDKPVKSFEGHTRVYY 124
SGQC + P + V + N + +T D + + K +K++ GH Y
Sbjct: 180 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 28 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 87
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 88 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
S+++ S S D+ + + + S K +K+ +GH+ +
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 111
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+ + L + S D +IW S G TL H +F +N + N I+S D++ IWD
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF 93
+G+C + HS P V + + S
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSL 163
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7 NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+GS + + SYDG RIW T+ G LK+ + P+ +K++ G YIL+A +D T +W
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
D + G+C + ++ H + + + S S D +++ L + + V+ +GHT
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Query: 121 RV 122
V
Sbjct: 286 DV 287
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 7 NGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
NG +LA+ S D +IW + DG + T+ HK I + W+ N ++SA DKT IWD
Sbjct: 40 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT 120
+SG+C + HS ++ ++ S S D+ + + + + K +K+ H+
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 9 SFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
+ + +GS+D RIW G TL H P+ A+ +N+ G+ I+S+ D IWD A
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 68 SGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIHVCKLHSDKPVKSFEGHTRVYY 124
SGQC + P + V + N + +T D + + K +K++ GH Y
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 28 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 87
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 88 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
S+++ S S D+ + + + S K +K+ +GH+ +
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 117
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+ + L + S D +IW S G TL H +F +N + N I+S D++ IWD
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF 93
+G+C + HS P V + + S
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7 NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+GS + + SYDG RIW T+ G LK+ + P+ +K++ G YIL+A +D T +W
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
D + G+C + ++ H + + + S S D +++ L + + V+ +GHT
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Query: 121 RV 122
V
Sbjct: 286 DV 287
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 7 NGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
NG +LA+ S D +IW + DG + T+ HK I + W+ N ++SA DKT IWD
Sbjct: 40 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT 120
+SG+C + HS ++ ++ S S D+ + + + + K +K+ H+
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 9 SFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
+ + +GS+D RIW G TL H P+ A+ +N+ G+ I+S+ D IWD A
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 68 SGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIHVCKLHSDKPVKSFEGHTRVYY 124
SGQC + P + V + N + +T D + + K +K++ GH Y
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 28 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 87
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 88 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
S+++ S S D+ + + + S K +K+ +GH+ +
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 117
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+ + L + S D +IW S G TL H +F +N + N I+S D++ IWD
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF 93
+G+C + HS P V + + S
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7 NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+GS + + SYDG RIW T+ G LK+ + P+ +K++ G YIL+A +D T +W
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
D + G+C + ++ H + + + S S D +++ L + + V+ +GHT
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Query: 121 RV 122
V
Sbjct: 286 DV 287
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 7 NGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
NG +LA+ S D +IW + DG + T+ HK I + W+ N ++SA DKT IWD
Sbjct: 40 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT 120
+SG+C + HS ++ ++ S S D+ + + + + K +K+ H+
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 9 SFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
+ + +GS+D RIW G TL H P+ A+ +N+ G+ I+S+ D IWD A
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 68 SGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIHVCKLHSDKPVKSFEGHTRVYY 124
SGQC + P + V + N + +T D + + K +K++ GH Y
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 28 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 87
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 88 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
S+++ S S D+ + + + S K +K+ +GH+ +
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 117
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+ + L + S D +IW S G TL H +F +N + N I+S D++ IWD
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF 93
+G+C + HS P V + + S
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7 NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+GS + + SYDG RIW T+ G LK+ + P+ +K++ G YIL+A +D T +W
Sbjct: 184 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 243
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
D + G+C + ++ H + + + S S D +++ L + + V+ +GHT
Sbjct: 244 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 303
Query: 121 RV 122
V
Sbjct: 304 DV 305
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 7 NGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
NG +LA+ S D +IW + DG + T+ HK I + W+ N ++SA DKT IWD
Sbjct: 58 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 117
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT 120
+SG+C + HS ++ ++ S S D+ + + + + K +K+ H+
Sbjct: 118 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 173
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 9 SFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
+ + +GS+D RIW G TL H P+ A+ +N+ G+ I+S+ D IWD A
Sbjct: 144 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 203
Query: 68 SGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIHVCKLHSDKPVKSFEGHTRVYY 124
SGQC + P + V + N + +T D + + K +K++ GH Y
Sbjct: 204 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 262
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 28 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 87
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 38 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 97
Query: 88 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
S+++ S S D+ + + + S K +K+ +GH+ +
Sbjct: 98 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 135
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 6 NNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
++ + L + S D +IW S G TL H +F +N + N I+S D++ IW
Sbjct: 99 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSNTSF 93
D +G+C + HS P V + + S
Sbjct: 159 DVKTGKCLKTLPAHSDPVSAVHFNRDGSL 187
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7 NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+GS + + SYDG RIW T+ G LK+ + P+ +K++ G YIL+A +D T +W
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
D + G+C + ++ H + + + S S D +++ L + + V+ +GHT
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 301
Query: 121 RV 122
V
Sbjct: 302 DV 303
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 7 NGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
NG +LA+ S D +IW + DG + T+ HK I + W+ N ++SA DKT IWD
Sbjct: 56 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 115
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT 120
+SG+C + HS ++ ++ S S D+ + + + + K +K+ H+
Sbjct: 116 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 171
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 9 SFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
+ + +GS+D RIW G TL H P+ A+ +N+ G+ I+S+ D IWD A
Sbjct: 142 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 201
Query: 68 SGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIHVCKLHSDKPVKSFEGHTRVYY 124
SGQC + P + V + N + +T D + + K +K++ GH Y
Sbjct: 202 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 260
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 28 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 87
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 36 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 95
Query: 88 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
S+++ S S D+ + + + S K +K+ +GH+ +
Sbjct: 96 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 133
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 6 NNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
++ + L + S D +IW S G TL H +F +N + N I+S D++ IW
Sbjct: 97 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSNTSF 93
D +G+C + HS P V + + S
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSL 185
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 6/122 (4%)
Query: 7 NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+GS + + SYDG RIW T+ G LK+ + P+ +K++ G YIL+A +D +W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW 222
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
D + G+C + ++ H + + + S S D +++ L + + V+ +GHT
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Query: 121 RV 122
V
Sbjct: 283 DV 284
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 7 NGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
NG +LA+ S D +IW + DG + T+ HK I + W+ N ++SA DKT IWD
Sbjct: 37 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT 120
+SG+C + HS ++ ++ S S D+ + + + + +K+ H+
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 9 SFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
+ + +GS+D RIW G TL H P+ A+ +N+ G+ I+S+ D IWD A
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 68 SGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIHVCKLHSDKPVKSFEGHTRVYY 124
SGQC + P + V + N + +T D + + K +K++ GH Y
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKY 241
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 28 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 87
+L TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 17 ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 88 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
S+++ S S D+ + + + S K +K+ +GH+ +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+ + L + S D +IW S G TL H +F +N + N I+S D++ IWD
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 66 AASGQCEQQFSFHSAPA 82
+G C + HS P
Sbjct: 139 VKTGMCLKTLPAHSDPV 155
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 11 LATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKW--NKRGNYILSAGVDKTTIIWDAA 67
+ T S DG +W G L + H + L ++ GN +S G DK ++WD
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228
Query: 68 SGQCEQQFSFHSAPALDVD-WQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVY 123
SGQC Q F H + V + S +FAS S D + L +D+ V + + ++
Sbjct: 229 SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF 285
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 30 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW-- 87
K ++ H + A + IL+A D T +WD SGQ Q F H A L +D
Sbjct: 147 KKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 206
Query: 88 -QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH 119
++ +F S D+ V + S + V++FE H
Sbjct: 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH 239
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 30 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
+ TL H + + W K I+S+ D I+WD+
Sbjct: 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDS 93
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 8 GSFLATGSYDGYARIWT---SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
G+FL GS+ R W S ++ H GP+ + W+ G+ + +A DKT +W
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSNTSFASCST---DQHIHVCKLHSDKPVKSFEGHTR 121
D +S Q Q + H AP + W +++ T D+ + S P+ + R
Sbjct: 114 DLSSNQA-IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPER 172
Query: 122 VY 123
Y
Sbjct: 173 CY 174
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 6 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNY--ILSAGVDKTTII 63
++GS + T S D A++W + + QH P+ + W K NY +++ DKT
Sbjct: 96 DDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKF 155
Query: 64 WDAAS 68
WD S
Sbjct: 156 WDTRS 160
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+G FLATG+ D RIW + + L H+ I++L + G+ ++S D+T IWD
Sbjct: 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 193
Query: 66 AASGQCEQQFSFH 78
+GQC S
Sbjct: 194 LRTGQCSLTLSIE 206
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 21/137 (15%)
Query: 4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQ-------HKGPIFALKWNKRGNYILSA 55
S +G ++A GS D R+W S+ G L L HK ++++ + + G ++S
Sbjct: 215 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 274
Query: 56 GVDKTTIIWD------------AASGQCEQQFSFHSAPALDVDWQSNTSFA-SCSTDQHI 102
+D++ +W+ SG CE + H L V N + S S D+ +
Sbjct: 275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 334
Query: 103 HVCKLHSDKPVKSFEGH 119
S P+ +GH
Sbjct: 335 LFWDKKSGNPLLMLQGH 351
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 8 GSFLATGSYDGYARIWTSDGS---LKSTLGQ-HKGPIFALKWNKRGNYILSAGVDKTTII 63
G+ LA+ D RIW ++G KS L + H+ + + W+ GNY+ SA D TT I
Sbjct: 28 GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87
Query: 64 WDAASG--QCEQQFSFHSAPALDVDW-QSNTSFASCSTDQHIHVCKLHSD---KPVKSFE 117
W +C H V W S A+CS D+ + V ++ + + V
Sbjct: 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN 147
Query: 118 GHTR-----VYYLAMDLL 130
HT+ V++ + +LL
Sbjct: 148 SHTQDVKHVVWHPSQELL 165
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 20/115 (17%)
Query: 10 FLATGSYDGYARIWTS---DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD- 65
LA+ SYD +++ D +TL H+ +++L ++ G + S D+T IW
Sbjct: 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223
Query: 66 ---------AASG-----QCEQQFS-FHSAPALDVDW-QSNTSFASCSTDQHIHV 104
A SG +C S FHS D+ W Q + A+ D I V
Sbjct: 224 YLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRV 278
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 45.4 bits (106), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 6 NNGSFLATGSYDGYARIWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
++G LA+ S D ++W G T+ H + ++ G++I+SA DKT +W
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
Query: 65 DAASGQCEQQFSFHSAPALDVDW-------QSNTSFASCSTDQHIHV 104
+ +G C + F+ H +W Q T ASCS DQ + V
Sbjct: 220 EVQTGYCVKTFTGHR------EWVRMVRPNQDGTLIASCSNDQTVRV 260
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 2 QSSRNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKT 60
+ S G FL +GS D ++W S G TL H + + ++ G +ILS DKT
Sbjct: 302 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361
Query: 61 TIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHV 104
+WD + +C + + H +D+ + + S DQ + V
Sbjct: 362 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 23 WTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA 82
W K L H+ P+ + ++ + ++SA D T +WD +G E+ H+
Sbjct: 94 WIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV 153
Query: 83 LDVDW-QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH 119
D+ + S ASCS D I + + +++ GH
Sbjct: 154 QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH 191
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
NG + + S D ++W G T H+ + ++ N+ G I S D+T +W
Sbjct: 203 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSFASCS 97
A+ +C+ + H + W +S++S S
Sbjct: 263 VATKECKAELREHRHVVECISWAPESSYSSIS 294
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 6 NNGSFLATGSYDGYARIWT-SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+ G F+ + + D R+W + TL H+ + +L ++K Y+++ VD+T +W
Sbjct: 348 SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Query: 65 D 65
+
Sbjct: 408 E 408
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 9 SFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
+++ TG+ D R++ S + L H G ++ALK+ G ++S D+T +WD
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIK 191
Query: 68 SGQCEQQFSFHSAPA--LD-VDWQSNTSFASCSTDQHIHVCKLHSDKPV 113
G C F H++ LD V++++ + S D +HV KL + V
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 240
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 49 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW-QSNTSFASCSTDQHIHVCKL 107
GN ++S D T I+WD A +C S H+ + S S D I + L
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339
Query: 108 HSDKPVKSFEGHT 120
+ + + + +GHT
Sbjct: 340 ENGELMYTLQGHT 352
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 1 MQSSRNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK 59
+++ +G+ + +GSYD +W + L H I++ ++ +SA +D
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332
Query: 60 TTIIWDAASGQCEQQFSFHSA 80
T IWD +G+ H+A
Sbjct: 333 TIRIWDLENGELMYTLQGHTA 353
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 50 NYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS 109
NY+++ DK ++D+ + + Q S H + + S STD+ + V +
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK 192
Query: 110 DKPVKSFEGH 119
FEGH
Sbjct: 193 GCCTHVFEGH 202
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 9 SFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
+++ TG+ D R++ S + L H G ++ALK+ G ++S D+T +WD
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIK 191
Query: 68 SGQCEQQFSFHSAPA--LD-VDWQSNTSFASCSTDQHIHVCKLHSDKPV 113
G C F H++ LD V++++ + S D +HV KL + V
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 240
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 49 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW-QSNTSFASCSTDQHIHVCKL 107
GN ++S D T I+WD A +C S H+ + S S D I + L
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
Query: 108 HSDKPVKSFEGHT 120
+ + + +GHT
Sbjct: 340 ENGELXYTLQGHT 352
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 1 MQSSRNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK 59
+++ +G+ + +GSYD +W + L H I++ ++ +SA D
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDT 332
Query: 60 TTIIWDAASGQCEQQFSFHSA 80
T IWD +G+ H+A
Sbjct: 333 TIRIWDLENGELXYTLQGHTA 353
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 50 NYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS 109
NY+++ DK ++D+ + + Q S H + + S STD+ + V +
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK 192
Query: 110 DKPVKSFEGH 119
FEGH
Sbjct: 193 GCCTHVFEGH 202
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 10 FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 69
+ A+ +DG ++W ++ ++ T H+ + L + G YI + G DK +IWD +
Sbjct: 186 YFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL 245
Query: 70 QCEQQFSFHSAPALD-VDWQSNTSFASCSTDQHIHVCKL--HSDKPVKSFEGH 119
Q+ F + ++ + + + + TDQ + + L S PV + E
Sbjct: 246 TYPQR-EFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAE 297
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 41 FALKWNKRGNYILSAGVDKTTIIW-------DAASGQCEQQFSFHSAPALDVDWQSNTSF 93
F+ K N+ ++S DKT +IW + G + + H+ D+ F
Sbjct: 31 FSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90
Query: 94 A-SCSTDQHIHVCKLHSDKPVKSFEGH-TRVYYLAM 127
A S S D+ + + L + K F GH + VY +A
Sbjct: 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF 126
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 5 RNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
R +G +A+ S D ++W +G L TL H ++ + ++ G I SA DKT +W
Sbjct: 271 RPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
+ +GQ Q + HS+ V + + + AS S D+ + + + + +++ GH+
Sbjct: 331 N-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS 385
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 7 NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
+G +A+ S D ++W +G L TL H ++ + ++ G I SA DKT +W+
Sbjct: 27 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN- 85
Query: 67 ASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
+GQ Q + HS+ V + + + AS S D+ + + + + +++ GH+ +
Sbjct: 86 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVW 143
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 7 NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
+G +A+ S D ++W +G L TL H ++ + ++ G I SA DKT +W+
Sbjct: 109 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN- 167
Query: 67 ASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
+GQ Q + HS+ V + + + AS S D+ + + + + +++ GH+
Sbjct: 168 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS 221
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 7 NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
+G +A+ S D ++W +G L TL H + + ++ G I SA DKT +W+
Sbjct: 191 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN- 249
Query: 67 ASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
+GQ Q + HS+ V ++ + + AS S D+ + + + + +++ GH+ +
Sbjct: 250 RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVW 307
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 7 NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
+G +A+ S D ++W +G L TL H + + ++ G I SA DKT +W+
Sbjct: 478 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN- 536
Query: 67 ASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHV 104
+GQ Q + HS+ V + + + AS S+D+ + +
Sbjct: 537 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKL 575
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 7 NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
+G +A+ S D ++W +G L TL H + + ++ G I SA DKT +W+
Sbjct: 355 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN- 413
Query: 67 ASGQCEQQFSFHSAPALDVDWQ-SNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
+GQ Q + HS+ V + + + AS S D+ + + + + +++ GH+
Sbjct: 414 RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHS 467
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 11 LATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ 70
+A+ S D ++W +G L TL H + + ++ G I SA DKT +W+ +GQ
Sbjct: 441 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQ 499
Query: 71 CEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
Q + HS+ V + + + AS S D+ + + + + +++ GH+ +
Sbjct: 500 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVW 553
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 7 NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+G +A+ S D ++W +G L TL H ++ + ++ G I SA DKT +W+
Sbjct: 519 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 30 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 89
++ L H + + ++ G I SA DKT +W+ +GQ Q + HS+ V +
Sbjct: 9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP 67
Query: 90 N-TSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
+ + AS S D+ + + + + +++ GH+
Sbjct: 68 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHS 98
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 5 RNNGSFLATGSYDGYARIWTSDGS--------LKSTLGQHKGPIFALKWNKRGNYILSAG 56
R + S LA GS+D IW + S L + + H+ + + W+ G Y+ +
Sbjct: 67 RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS 126
Query: 57 VDKTTIIWDA-ASG---QCEQQFSFHSAPALDVDWQ-SNTSFASCSTDQHIHVCKLHSD- 110
DK+ IW+ SG +C HS V W S AS S D + + K + D
Sbjct: 127 RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD 186
Query: 111 -KPVKSFEGH 119
+ V GH
Sbjct: 187 WECVAVLNGH 196
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 10 FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAAS 68
+ +GS+D A++W +GSL L H ++ K N L+A DKT +W +
Sbjct: 116 VVISGSWDKTAKVW-KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW--QN 172
Query: 69 GQCEQQFS-FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
+ + FS H+ + + F SCS D I + H+ ++++EGH Y
Sbjct: 173 DKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVY 229
Score = 33.1 bits (74), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 6 NNGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
++G F++ S DG ++ G + T H+ ++ +K G+ I+S G D+T IW
Sbjct: 194 DDGHFISC-SNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIW 251
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHV 104
+G +Q + + VD SN S+D + +
Sbjct: 252 SKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDNLVRI 291
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTI 62
S+ +G+ + DG D SLK+ H G +F L W+ G I SA DKT
Sbjct: 207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNV--AHSGSVFGLTWSPDGTKIASASADKTIK 264
Query: 63 IWDAASGQCEQQF 75
IW+ A+ + E+
Sbjct: 265 IWNVATLKVEKTI 277
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 29 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-------FHSAP 81
KST G+H + ++++N G+ S G D T ++++ G F HS
Sbjct: 182 FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS 241
Query: 82 ALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTRV 122
+ W + T AS S D+ I + + + K K+ TR+
Sbjct: 242 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 283
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 8 GSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWNKRGNYILSAG 56
G + A+G G RIW + + LK+T+ GP+ + W+ I + G
Sbjct: 71 GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVG 122
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 32 TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT 91
TL H G +++L W N+I+SA D I+W+A + Q H ++ + N
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 92 SFASC 96
+C
Sbjct: 121 QSVAC 125
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 19/131 (14%)
Query: 7 NGSFLATGSYDGYARIWT------SDGSLK--STLGQHKGPIFALKW--NKRGNYILSAG 56
NG +A G D I+ DG++ L HKG + ++ ++ I +G
Sbjct: 119 NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG 178
Query: 57 VDKTTIIWDAASGQCEQQF-----SFHSAPALDVDWQSNTS--FASCSTDQHIHVCKLH- 108
D+T ++WD +GQ F S H+A L + S + F S S D + + L
Sbjct: 179 -DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI 237
Query: 109 SDKPVKSFEGH 119
+ + V+++ GH
Sbjct: 238 TSRAVRTYHGH 248
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 40.0 bits (92), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 7 NGSFLATGSYDGYARIWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+G + +G+YD ++W + + TL H +++L+++ G +++S +D + +WD
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWD 305
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG 118
+G C + H + ++ + N S + D + + + + + +++ +G
Sbjct: 306 VETGNCIHTLTGHQSLTSGMELKDNI-LVSGNADSTVKIWDIKTGQCLQTLQG 357
Score = 40.0 bits (92), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 8 GSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
G+ + +GS D ++W++ G TL H G +++ + R N I+S D+T +W+A
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ--MRDNIIISGSTDRTLKVWNA 186
Query: 67 ASGQCEQQFSFHSA 80
+G+C H++
Sbjct: 187 ETGECIHTLYGHTS 200
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 5/128 (3%)
Query: 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTT 61
SS+ + + +GS D ++W ++ G TL H + + +++ ++S D T
Sbjct: 164 SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK--RVVSGSRDATL 221
Query: 62 IIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT- 120
+WD +GQC H A V + S + D + V ++ + + +GHT
Sbjct: 222 RVWDIETGQCLHVLMGHVAAVRCVQYDGR-RVVSGAYDFMVKVWDPETETCLHTLQGHTN 280
Query: 121 RVYYLAMD 128
RVY L D
Sbjct: 281 RVYSLQFD 288
Score = 32.0 bits (71), Expect = 0.089, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 9 SFLATGSYDGYARIW-TSDGSLKSTL---GQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+ L +G+ D +IW G TL +H+ + L++NK N+++++ D T +W
Sbjct: 330 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLW 387
Query: 65 DAASGQ 70
D +G+
Sbjct: 388 DLKTGE 393
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 7 NGSFLATGSYDGYARIWT-SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+G L + S D +IW+ DGS TL H+ + + RG +LSA +D T +W+
Sbjct: 147 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIH 103
+G F+ P V N+ TD+ +H
Sbjct: 207 CGTGTTIHTFNRKENPHDGV----NSIALFVGTDRQLH 240
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 14 GSYDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 72
G+ +G ++ S+ +L+ + Q H I LK+ G ++S+ D IW G
Sbjct: 112 GTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 171
Query: 73 QQFSFHSAPALDV 85
+ H A D+
Sbjct: 172 RTLIGHRATVTDI 184
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 7 NGSFLATGSYDGYARIWT-SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+G L + S D +IW+ DGS TL H+ + + RG +LSA +D T +W+
Sbjct: 150 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIH 103
+G F+ P V N+ TD+ +H
Sbjct: 210 CGTGTTIHTFNRKENPHDGV----NSIALFVGTDRQLH 243
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 14 GSYDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 72
G+ +G ++ S+ +L+ + Q H I LK+ G ++S+ D IW G
Sbjct: 115 GTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 174
Query: 73 QQFSFHSAPALDV 85
+ H A D+
Sbjct: 175 RTLIGHRATVTDI 187
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 11 LATGSYDGYARIWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 69
+ +G D +IW + K L H G + L++++R I++ D T +WD +G
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWDVNTG 203
Query: 70 QCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS 109
+ H L + + +N +CS D+ I V + S
Sbjct: 204 EMLNTLIHHCEAVLHLRF-NNGMMVTCSKDRSIAVWDMAS 242
Score = 33.5 bits (75), Expect = 0.030, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 5 RNNGSFLATGSYDGYARIWTSDGSLK----------STLGQHKGPIFALKWNKRGNYILS 54
R + + +G+YDG ++W +L TL +H G +F L++++ I+S
Sbjct: 343 RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVS 400
Query: 55 AGVDKTTIIWD 65
+ D T +IWD
Sbjct: 401 SSHDDTILIWD 411
Score = 32.3 bits (72), Expect = 0.083, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 10 FLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS 68
++ + S D ++W TS TL HK I L++ R ++S D T +WD
Sbjct: 268 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIEC 325
Query: 69 GQCEQQFSFH 78
G C + H
Sbjct: 326 GACLRVLEGH 335
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 31 STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE----QQFSFHSAPALDV- 85
+TL H + L+W G ++ S G D +W +A G+ Q F+ H V
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 86 --DWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTRV 122
WQSN + ++D+HI + + S + + + H++V
Sbjct: 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV 243
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 6 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGP---IFALKWNKRGNYILSAGVDKTTI 62
++G+ LA + D +W++ L Q + P I ++ W K GNY+
Sbjct: 34 SSGNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ 92
Query: 63 IWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLH-SDKPVKSFEGHTR 121
+WD + + + HSA + W S +S S HIH + ++ V + GH++
Sbjct: 93 LWDVQQQKRLRNMTSHSARVGSLSWNSYI-LSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 151
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 31 STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ----CEQQFSFHSAPALDV- 85
+TL H + L+W G ++ S G D +W +A G+ Q F+ H V
Sbjct: 235 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 86 --DWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTRV 122
WQSN + ++D+HI + + S + + + H++V
Sbjct: 295 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV 334
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 6 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGP---IFALKWNKRGNYILSAGVDKTTI 62
++G+ LA + D +W++ L Q + P I ++ W K GNY+
Sbjct: 125 SSGNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ 183
Query: 63 IWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLH-SDKPVKSFEGHTR 121
+WD + + + HSA + W S +S S HIH + ++ V + GH++
Sbjct: 184 LWDVQQQKRLRNMTSHSARVGSLSWNSYI-LSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 242
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 31 STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ----CEQQFSFHSAPALDV- 85
+TL H + L+W G ++ S G D +W +A G+ Q F+ H V
Sbjct: 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 86 --DWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTRV 122
WQSN + ++D+HI + + S + + + H++V
Sbjct: 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV 323
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 6 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGP---IFALKWNKRGNYILSAGVDKTTI 62
++G+ LA + D +W++ L Q + P I ++ W K GNY+
Sbjct: 114 SSGNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ 172
Query: 63 IWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLH-SDKPVKSFEGHTR 121
+WD + + + HSA + W S +S S HIH + ++ V + GH++
Sbjct: 173 LWDVQQQKRLRNMTSHSARVGSLSWNSYI-LSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 231
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 17/108 (15%)
Query: 10 FLATGSYDGYARIW-TSDGSLK-STLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIW-- 64
LATGS D +W + LK T HK IF + W+ IL S+G D+ +W
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 65 ----------DAASGQCEQQFSF--HSAPALDVDWQSNTSFASCSTDQ 100
DA G E F H+A D W N + CS +
Sbjct: 350 SKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 397
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 33 LGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQCEQQ-------FSFHSAPALD 84
L H+ + L WN ++LSA D T +WD +G E + F+ HSA D
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 85 VDWQ--SNTSFASCSTDQHIHVCKLHSD---KPVKSFEGHT 120
V W + F S + DQ + + S+ KP + HT
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHT 275
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 49 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHV 104
G Y LSA DKT +WD A+G+ Q+F H + + VD S S S D+ I V
Sbjct: 71 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 127
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 10/113 (8%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+G++ + S+D R+W + G HK + ++ +K+ + I+S DKT +W
Sbjct: 70 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW- 128
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSFA--SCSTDQHIHVCKLHSDKPVKSF 116
GQC H+ DW S + D + + +DK VK++
Sbjct: 129 TIKGQCLATLLGHN------DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 175
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Query: 8 GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKW--NKRGN----YILSAGVDKTT 61
S + +GS D ++WT G +TL H + ++ N++ + I+SAG DK
Sbjct: 113 ASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 172
Query: 62 IIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
W+ Q E F H++ + + T AS D I + L + K + +
Sbjct: 173 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 232
Query: 121 RVYYLA 126
V+ LA
Sbjct: 233 EVFSLA 238
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 29 LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIW-----DAASGQCEQQFSFHSAPA 82
L+ TL H G + +L + + N +LSA DKT I W D G + F HS
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 83 LDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGH 119
D ++ ++A S S D+ + + + + + + F GH
Sbjct: 63 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 100
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 49 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHV 104
G Y LSA DKT +WD A+G+ Q+F H + + VD S S S D+ I V
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 10/113 (8%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+G++ + S+D R+W + G HK + ++ +K+ + I+S DKT +W
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW- 134
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSFA--SCSTDQHIHVCKLHSDKPVKSF 116
GQC H+ DW S + D + + +DK VK++
Sbjct: 135 TIKGQCLATLLGHN------DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Query: 8 GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKW--NKRGN----YILSAGVDKTT 61
S + +GS D ++WT G +TL H + ++ N++ + I+SAG DK
Sbjct: 119 ASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 62 IIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
W+ Q E F H++ + + T AS D I + L + K + +
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 121 RVYYLA 126
V+ LA
Sbjct: 239 EVFSLA 244
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 29 LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIW-----DAASGQCEQQFSFHSAPA 82
L+ TL H G + +L + + N +LSA DKT I W D G + F HS
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 83 LDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGH 119
D ++ ++A S S D+ + + + + + + F GH
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 49 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHV 104
G Y LSA DKT +WD A+G+ Q+F H + + VD S S S D+ I V
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 10/113 (8%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+G++ + S+D R+W + G HK + ++ +K+ + I+S DKT +W
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW- 134
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSFA--SCSTDQHIHVCKLHSDKPVKSF 116
GQC H+ DW S + D + + +DK VK++
Sbjct: 135 TIKGQCLATLLGHN------DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Query: 8 GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKW--NKRGN----YILSAGVDKTT 61
S + +GS D ++WT G +TL H + ++ N++ + I+SAG DK
Sbjct: 119 ASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 62 IIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
W+ Q E F H++ + + T AS D I + L + K + +
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 121 RVYYLA 126
V+ LA
Sbjct: 239 EVFSLA 244
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 29 LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIW-----DAASGQCEQQFSFHSAPA 82
L+ TL H G + +L + + N +LSA DKT I W D G + F HS
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 83 LDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGH 119
D ++ ++A S S D+ + + + + + + F GH
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 49 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHV 104
G Y LSA DKT +WD A+G+ Q+F H + + VD S S S D+ I V
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 10/113 (8%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+G++ + S+D R+W + G HK + ++ +K+ + I+S DKT +W
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW- 134
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSFA--SCSTDQHIHVCKLHSDKPVKSF 116
GQC H+ DW S + D + + +DK VK++
Sbjct: 135 TIKGQCLATLLGHN------DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Query: 8 GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKW--NKRGN----YILSAGVDKTT 61
S + +GS D ++WT G +TL H + ++ N++ + I+SAG DK
Sbjct: 119 ASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 62 IIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
W+ Q E F H++ + + T AS D I + L + K + +
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 121 RVYYLA 126
V+ LA
Sbjct: 239 EVFSLA 244
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 29 LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIW-----DAASGQCEQQFSFHSAPA 82
L+ TL H G + +L + + N +LSA DKT I W D G + F HS
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 83 LDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGH 119
D ++ ++A S S D+ + + + + + + F GH
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 17/108 (15%)
Query: 10 FLATGSYDGYARIWT-SDGSLK-STLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIW-- 64
LATGS D +W + LK T HK IF + W+ IL S+G D+ +W
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 65 ----------DAASGQCEQQFSF--HSAPALDVDWQSNTSFASCSTDQ 100
DA G E F H+A D W N + CS +
Sbjct: 350 SKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 397
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 33 LGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQCEQQ-------FSFHSAPALD 84
L H+ + L WN ++LSA D T +WD +G E + F+ HSA D
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 85 VDWQ--SNTSFASCSTDQHIHVCKLHSD---KPVKSFEGHT 120
V W + F S + DQ + + S+ KP + HT
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHT 275
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 49 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHV 104
G Y LSA DKT +WD A+G+ Q+F H + + VD S S S D+ I V
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 10/113 (8%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+G++ + S+D R+W + G HK + ++ +K+ + I+S DKT +W
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW- 134
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSFA--SCSTDQHIHVCKLHSDKPVKSF 116
GQC H+ DW S + D + + +DK VK++
Sbjct: 135 TIKGQCLATLLGHN------DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Query: 8 GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKW--NKRGN----YILSAGVDKTT 61
S + +GS D ++WT G +TL H + ++ N++ + I+SAG DK
Sbjct: 119 ASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 62 IIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
W+ Q E F H++ + + T AS D I + L + K + +
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 121 RVYYLA 126
V+ LA
Sbjct: 239 EVFSLA 244
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 29 LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIW-----DAASGQCEQQFSFHSAPA 82
L+ TL H G + +L + + N +LSA DKT I W D G + F HS
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 83 LDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGH 119
D ++ ++A S S D+ + + + + + + F GH
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 11 LATGSYDGYARIWT-SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 69
+ + S+D ++W S+ L+STL H G + + + G+ S G D ++WD A G
Sbjct: 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG 593
Query: 70 QCEQQFSFHSAPALDVDWQSNTSFASCSTDQH-IHVCKLHSDKPVKSFE 117
+ + +S + + S + C+ +H I + L S V+ +
Sbjct: 594 K--KLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLK 640
Score = 29.3 bits (64), Expect = 0.70, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Query: 6 NNGSFLATGSYDGYARIW--TSD----GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK 59
+N + + S D +W T D G + L H + + + G + LS D
Sbjct: 393 DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452
Query: 60 TTIIWDAASGQCEQQFSFHSAPALDVDWQ-SNTSFASCSTDQHIHV 104
+WD A+G ++F H+ L V + N S S D+ I +
Sbjct: 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKL 498
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 8 GSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKW--NKRGNYILSAGVDKTTI 62
G LAT S D +I+ +G L TL H+GP++ + W K G + S D +
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 63 IWDAASGQCEQ--QFSFHSAPALDVDW 87
IW +G+ Q + HSA V W
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQW 107
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 9 SFLATGSYDGYARIWTSDGSL----KSTLGQHKGP--IFALKWNKRGNYI-LSAGVDKTT 61
S+LA+ S D IWT D K+ L + K P ++ W+ GN + LS G +K T
Sbjct: 220 SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 279
Query: 62 IIWDAASGQCEQQFSFH 78
+ + G+ E H
Sbjct: 280 LWKENLEGKWEPAGEVH 296
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 11 LATGSYDGYARIW--TSDGS---LKSTLGQHKGPIFALKWNKR---GNYILSAGVDKTTI 62
TG D +IW SD L+STL H + + W+ +Y+ S D+T I
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 63 IWDAASGQ 70
IW + Q
Sbjct: 233 IWTQDNEQ 240
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 36 HKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQ-------FSFHSAPALDVDW 87
H+ + L WN N Y+LSA D T +WD + E + F+ H+A DV W
Sbjct: 180 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW 239
Query: 88 Q--SNTSFASCSTDQHIHVCKL---HSDKPVKSFEGHT 120
+ F S + DQ + + ++ KP + + HT
Sbjct: 240 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 277
Score = 36.2 bits (82), Expect = 0.006, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 17/107 (15%)
Query: 11 LATGSYDGYARIWT-SDGSLK-STLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIW--- 64
LATGS D +W + LK + HK IF ++W+ IL S+G D+ +W
Sbjct: 293 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352
Query: 65 ---------DAASGQCEQQF--SFHSAPALDVDWQSNTSFASCSTDQ 100
DA G E F H+A D W N + CS +
Sbjct: 353 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE 399
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 36 HKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQ-------FSFHSAPALDVDW 87
H+ + L WN N Y+LSA D T +WD + E + F+ H+A DV W
Sbjct: 182 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW 241
Query: 88 Q--SNTSFASCSTDQHIHVCKL---HSDKPVKSFEGHT 120
+ F S + DQ + + ++ KP + + HT
Sbjct: 242 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 279
Score = 36.2 bits (82), Expect = 0.006, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 17/107 (15%)
Query: 11 LATGSYDGYARIWT-SDGSLK-STLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIW--- 64
LATGS D +W + LK + HK IF ++W+ IL S+G D+ +W
Sbjct: 295 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354
Query: 65 ---------DAASGQCEQQF--SFHSAPALDVDWQSNTSFASCSTDQ 100
DA G E F H+A D W N + CS +
Sbjct: 355 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE 401
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 17/108 (15%)
Query: 10 FLATGSYDGYARIWT-SDGSLK-STLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWD- 65
LATGS D +W + LK + HK IF ++W+ IL S+G D+ +WD
Sbjct: 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Query: 66 -----------AASGQCEQQFSF--HSAPALDVDWQSNTSFASCSTDQ 100
A G E F H+A D W N + CS +
Sbjct: 348 SKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 395
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 33 LGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQCEQQ-------FSFHSAPALD 84
L H+ + L WN ++LSA D T +WD ++ E + F+ H+A D
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 85 VDWQ--SNTSFASCSTDQHIHVCKLHSD---KPVKSFEGHT 120
V W + F S + DQ + + S+ KP S + HT
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHT 273
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 8 GSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKW--NKRGNYILSAGVDKTTI 62
G LAT S D +I+ +G L TL H+GP++ + W K G + S D +
Sbjct: 23 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82
Query: 63 IWDAASGQCEQ--QFSFHSAPALDVDW 87
IW +G+ Q + HSA V W
Sbjct: 83 IWKEENGRWSQIAVHAVHSASVNSVQW 109
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 9 SFLATGSYDGYARIWTSDGSL----KSTLGQHKGP--IFALKWNKRGNYI-LSAGVDKTT 61
S+LA+ S D IWT D K+ L + K P ++ W+ GN + LS G +K T
Sbjct: 222 SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 281
Query: 62 IIWDAASGQCEQQFSFH 78
+ + G+ E H
Sbjct: 282 LWKENLEGKWEPAGEVH 298
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 11 LATGSYDGYARIW--TSDGS---LKSTLGQHKGPIFALKWNKR---GNYILSAGVDKTTI 62
TG D +IW SD L+STL H + + W+ +Y+ S D+T I
Sbjct: 175 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 234
Query: 63 IW 64
IW
Sbjct: 235 IW 236
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 17/108 (15%)
Query: 10 FLATGSYDGYARIWT-SDGSLK-STLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIW-- 64
LATGS D +W + LK + HK IF ++W+ IL S+G D+ +W
Sbjct: 296 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Query: 65 ----------DAASGQCEQQFSF--HSAPALDVDWQSNTSFASCSTDQ 100
DA G E F H+A D W N + CS +
Sbjct: 356 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE 403
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 33 LGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQ-------FSFHSAPALD 84
L H+ + L WN N Y+LSA D T +WD + E + F+ H+A D
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 85 VDWQ--SNTSFASCSTDQHIHVCKLHSD---KPVKSFEGHT 120
V W + F S + DQ + + ++ KP + + HT
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 281
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 6 NNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
++G F +GS+DG R+W + G+ H + ++ ++ I+S DKT +W
Sbjct: 96 SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 155
Query: 65 DAASGQCE--QQFSFHSAPALDVDWQSNTS---FASCSTDQHIHVCKLHSDKPVKSFEGH 119
+ G C+ Q HS V + N+S SC D+ + V L + K + GH
Sbjct: 156 NTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH 214
Query: 120 T 120
T
Sbjct: 215 T 215
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 19 YARIWTSDGSLKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIW-----DAASGQCE 72
+ + T +L+ TL H G + + + + ILSA DKT I+W + G +
Sbjct: 20 FQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ 79
Query: 73 QQFSFHSAPALDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTR 121
+ HS DV S+ FA S S D + + L + + F GHT+
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK 129
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 8 GSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKW--NKRGNYILSAGVDKTTI 62
G LAT S D +I+ +G L TL H+GP++ + W K G + S D +
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 63 IWDAASGQCEQ--QFSFHSAPALDVDW 87
IW +G+ Q + HSA V W
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQW 107
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 9 SFLATGSYDGYARIWTSDGSL----KSTLGQHKGP--IFALKWNKRGNYI-LSAGVDKTT 61
S+LA+ S D IWT D K+ L + K P ++ W+ GN + LS G +K T
Sbjct: 220 SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 279
Query: 62 IIWDAASGQCEQQFSFH 78
+ + G+ E H
Sbjct: 280 LWKENLEGKWEPAGEVH 296
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 11 LATGSYDGYARIW--TSDGS---LKSTLGQHKGPIFALKWNKR---GNYILSAGVDKTTI 62
TG D +IW SD L+STL H + + W+ +Y+ S D+T I
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 63 IW 64
IW
Sbjct: 233 IW 234
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 6 NNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
++G F +GS+DG R+W + G+ H + ++ ++ I+S DKT +W
Sbjct: 73 SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 132
Query: 65 DAASGQCE--QQFSFHSAPALDVDWQSNTS---FASCSTDQHIHVCKLHSDKPVKSFEGH 119
+ G C+ Q HS V + N+S SC D+ + V L + K + GH
Sbjct: 133 NTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH 191
Query: 120 T 120
T
Sbjct: 192 T 192
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 24 TSDGSLKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIW-----DAASGQCEQQFSF 77
T +L+ TL H G + + + + ILSA DKT I+W + G ++
Sbjct: 2 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 61
Query: 78 HSAPALDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTR 121
HS DV S+ FA S S D + + L + + F GHT+
Sbjct: 62 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK 106
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 49 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHV 104
G Y LSA DKT +WD A+G+ Q+F H + VD S S S D+ I V
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKV 133
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 10/113 (8%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+G++ + S+D R+W + G HK + ++ +K+ + I+S DKT +W
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW- 134
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTSFA--SCSTDQHIHVCKLHSDKPVKSF 116
GQC H+ DW S + D + + +DK VK++
Sbjct: 135 TIKGQCLATLLGHN------DWVSQVRVVPNEKADDDSVTIISAGNDKXVKAW 181
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 7/127 (5%)
Query: 8 GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKW--NKRGN----YILSAGVDKTT 61
S + +GS D ++WT G +TL H + ++ N++ + I+SAG DK
Sbjct: 119 ASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXV 178
Query: 62 IIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
W+ Q E F H++ + + T AS D I + L + K +
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQD 238
Query: 121 RVYYLAM 127
V+ LA
Sbjct: 239 EVFSLAF 245
Score = 29.6 bits (65), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 29 LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIW-----DAASGQCEQQFSFHSAPA 82
L+ TL H G + +L + + N +LSA DKT I W D G + F HS
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 83 LDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGH 119
D ++ ++A S S D+ + + + + + + F GH
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 30 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 89
+ TL H I+A+ W +LSA D IIWD+ + S+ + +
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 90 NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRV 122
+ ++ +C +I C +++ +K+ EG+ RV
Sbjct: 108 SGNYVACGGLDNI--CSIYN---LKTREGNVRV 135
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 36 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFA 94
H G + +L +S D + +WD G C Q F+ H + + + N +FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 95 SCSTDQHIHVCKLHSDKPVKSF 116
+ S D + L +D+ + ++
Sbjct: 243 TGSDDATCRLFDLRADQELMTY 264
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 8 GSFLATGSYDGYARIW---TSDGSLKST--LGQHKGPIFALKWNKRGNYILSAGVDKTTI 62
G+++A G D I+ T +G+++ + L H G + ++ + S+G D T
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCA 167
Query: 63 IWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH 119
+WD +GQ F+ H+ + + +T F S + D + + ++F GH
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 21/123 (17%)
Query: 6 NNGSFLATGSYDGYARIW-TSDGSLK-------STLGQHKGPIFALKWNKRG-NYILSAG 56
+N + +A+GS D +W DG L TL H + + W+ N +LSAG
Sbjct: 92 HNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG 151
Query: 57 VDKTTIIWDAASGQCEQQF--SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK 114
D ++WD +G H VDW + + +C DK V+
Sbjct: 152 CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL----------ICTSCRDKRVR 201
Query: 115 SFE 117
E
Sbjct: 202 VIE 204
Score = 29.3 bits (64), Expect = 0.58, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 78 HSAPALDVDW--QSNTSFASCSTDQHIHVCKLHSD-------KPVKSFEGHTR 121
H+AP LD+ W ++ AS S D + V ++ +PV + EGHT+
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 30 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 89
+ TL H I+A+ W +LSA D IIWD+ + S+ + +
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 90 NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRV 122
+ ++ +C +I C +++ +K+ EG+ RV
Sbjct: 108 SGNYVACGGLDNI--CSIYN---LKTREGNVRV 135
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 36 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFA 94
H G + +L +S D + +WD G C Q F+ H + + + N +FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 95 SCSTDQHIHVCKLHSDKPVKSF 116
+ S D + L +D+ + ++
Sbjct: 243 TGSDDATCRLFDLRADQELMTY 264
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 8 GSFLATGSYDGYARIW---TSDGSLKST--LGQHKGPIFALKWNKRGNYILSAGVDKTTI 62
G+++A G D I+ T +G+++ + L H G + ++ + S+G D T
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCA 167
Query: 63 IWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH 119
+WD +GQ F+ H+ + + +T F S + D + + ++F GH
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 21/123 (17%)
Query: 6 NNGSFLATGSYDGYARIW-TSDGSLK-------STLGQHKGPIFALKWNKRG-NYILSAG 56
+N + +A+GS D +W DG L TL H + + W+ N +LSAG
Sbjct: 92 HNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG 151
Query: 57 VDKTTIIWDAASGQCEQQF--SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK 114
D ++WD +G H VDW + + +C DK V+
Sbjct: 152 XDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL----------ICTSCRDKRVR 201
Query: 115 SFE 117
E
Sbjct: 202 VIE 204
Score = 29.3 bits (64), Expect = 0.60, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 78 HSAPALDVDW--QSNTSFASCSTDQHIHVCKLHSD-------KPVKSFEGHTR 121
H+AP LD+ W ++ AS S D + V ++ +PV + EGHT+
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 8 GSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKW--NKRGNYILSAGVDKTTI 62
G +AT S D +I+ +G L TL H+GP++ + W K G + S D +
Sbjct: 21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80
Query: 63 IWDAASGQCEQ--QFSFHSAPALDVDW 87
IW +G+ Q + HSA V W
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQW 107
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 9 SFLATGSYDGYARIWTSDGSL----KSTLGQHKGP--IFALKWNKRGNYI-LSAGVDKTT 61
S++A+ S D IWT D K+ L + K P ++ W+ GN + LS G +K T
Sbjct: 220 SYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 279
Query: 62 IIWDAASGQCEQQFSFH 78
+ + G+ E H
Sbjct: 280 LWKENLEGKWEPAGEVH 296
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 11 LATGSYDGYARIW--TSDGS---LKSTLGQHKGPIFALKWNKR---GNYILSAGVDKTTI 62
TG D +IW SD L+STL H + + W+ +Y+ S D+T I
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI 232
Query: 63 IW 64
IW
Sbjct: 233 IW 234
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 15/125 (12%)
Query: 6 NNGSFLATGSYDGYARIWT-SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
NNG+F + S+D R+W +G + H + ++ ++ I+S G D +W
Sbjct: 77 NNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVW 136
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSNTSFA---------SCSTDQHIHVCKLHSDKPVKS 115
+ G+C S + DW S F+ S D + V L + + V
Sbjct: 137 N-VKGECMHTLSRGA----HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTD 191
Query: 116 FEGHT 120
+GHT
Sbjct: 192 LKGHT 196
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 33 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV 85
L H + + + GN+ +SA D + +W+ +GQC+ +F H+ L V
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSV 115
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 52 ILSAGVDKTTIIW----DAASGQC-----EQQFSFHSAPALDVDWQSNTSFA-SCSTDQH 101
++S DKT + W D S +C +++ HSA DV +N +FA S S D
Sbjct: 31 VVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHS 90
Query: 102 IHVCKLHSDKPVKSFEGHTR 121
+ + L + + F GHT+
Sbjct: 91 LRLWNLQNGQCQYKFLGHTK 110
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+ +LATG++ G I+ G + +L I ++ ++ G Y+ S +D I+D
Sbjct: 133 DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD 192
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH 119
A+G+ H+ P + + ++ + S D +I + + + GH
Sbjct: 193 IATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 247
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+ L T S DGY +I+ +L TL H + + + + +S+ DK+ +WD
Sbjct: 217 DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD 276
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHV 104
+ C F H V + N S S DQ IH+
Sbjct: 277 VGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHI 316
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 17/122 (13%)
Query: 3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKW--NKRGN--YILSAGVD 58
SSR N F T Y G L H I+++ W NK+ N +++ +D
Sbjct: 8 SSRENLYFQGTNQY----------GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLD 57
Query: 59 KTTIIWDAASGQCEQQFSF--HSAPALDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKS 115
+W + + Q+S H + VD A S S D HI + L + K +KS
Sbjct: 58 DLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKS 117
Query: 116 FE 117
+
Sbjct: 118 ID 119
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 37 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA----PALDVDWQSNTS 92
+G IFAL W + + G D T +WD + +C Q+++ + V N
Sbjct: 253 QGGIFALSWLDSQKF-ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 311
Query: 93 FASCSTDQHIHVCKLHSDKPVKSFEGHTR 121
S S D ++ +L D+ +K+ GH +
Sbjct: 312 IISLSLDGTLNFYELGHDEVLKTISGHNK 340
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 7 NGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
G L + S D A +W S +G TL H G I+++ + Y ++ D + +WD
Sbjct: 43 EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102
Query: 66 AASGQC 71
++GQC
Sbjct: 103 VSNGQC 108
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 33 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP--ALDVD 86
L H+ P+ +K+NK G+ + S D + +W + +G+ H+ ++DVD
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVD 83
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 37 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA----PALDVDWQSNTS 92
+G IFAL W + + G D T +WD + +C Q+++ + V N
Sbjct: 253 QGGIFALSWLDSQKF-ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 311
Query: 93 FASCSTDQHIHVCKLHSDKPVKSFEGHTR 121
S S D ++ +L D+ +K+ GH +
Sbjct: 312 IISLSLDGTLNFYELGHDEVLKTISGHNK 340
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 36 HKGPIFALKWNKRGNYILSA------------GVDKTTIIWDAASGQCEQQFSF-HSAPA 82
+K P+ L R NYI S G T IWD A+ + SAPA
Sbjct: 84 NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA 143
Query: 83 ---LDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
L + S F SC +D +I V LH+ V+ F+GHT
Sbjct: 144 CYALAISPDSKVCF-SCCSDGNIAVWDLHNQTLVRQFQGHT 183
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 30 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 89
+ TL H I+A+ W ++SA D IIWD+ + S+ + +
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 90 NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRV 122
+ ++ +C +I C +++ +K+ EG+ RV
Sbjct: 108 SGNYVACGGLDNI--CSIYN---LKTREGNVRV 135
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 36 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFA 94
H G + +L +S D + +WD G C Q F+ H + + + N +FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 95 SCSTDQHIHVCKLHSDKPVKSF 116
+ S D + L +D+ + ++
Sbjct: 243 TGSDDATCRLFDLRADQELMTY 264
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 8 GSFLATGSYDGYARIW---TSDGSLKST--LGQHKGPIFALKWNKRGNYILSAGVDKTTI 62
G+++A G D I+ T +G+++ + L H G + ++ + S+G D T
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCA 167
Query: 63 IWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH 119
+WD +GQ F+ H+ + + +T F S + D + + ++F GH
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 30 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 89
+ TL H I+A+ W ++SA D IIWD+ + S+ + +
Sbjct: 59 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 118
Query: 90 NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRV 122
+ ++ +C +I C +++ +K+ EG+ RV
Sbjct: 119 SGNYVACGGLDNI--CSIYN---LKTREGNVRV 146
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 36 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFA 94
H G + +L +S D + +WD G C Q F+ H + + + N +FA
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 95 SCSTDQHIHVCKLHSDKPVKSF 116
+ S D + L +D+ + ++
Sbjct: 254 TGSDDATCRLFDLRADQELMTY 275
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 8 GSFLATGSYDGYARIW---TSDGSLKST--LGQHKGPIFALKWNKRGNYILSAGVDKTTI 62
G+++A G D I+ T +G+++ + L H G + ++ + S+G D T
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCA 178
Query: 63 IWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH 119
+WD +GQ F+ H+ + + +T F S + D + + ++F GH
Sbjct: 179 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 236
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 30 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 89
+ TL H I+A+ W ++SA D IIWD+ + S+ + +
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 90 NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRV 122
+ ++ +C +I C +++ +K+ EG+ RV
Sbjct: 108 SGNYVACGGLDNI--CSIYN---LKTREGNVRV 135
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 36 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFA 94
H G + +L +S D + +WD G C Q F+ H + + + N +FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 95 SCSTDQHIHVCKLHSDKPVKSF 116
+ S D + L +D+ + ++
Sbjct: 243 TGSDDATCRLFDLRADQELMTY 264
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 8 GSFLATGSYDGYARIW---TSDGSLKST--LGQHKGPIFALKWNKRGNYILSAGVDKTTI 62
G+++A G D I+ T +G+++ + L H G + ++ + S+G D T
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCA 167
Query: 63 IWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH 119
+WD +GQ F+ H+ + + +T F S + D + + ++F GH
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 33.5 bits (75), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 8 GSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKW--NKRGNYILSAGVDKTTI 62
G AT S D +I+ +G L TL H+GP++ + W K G + S D
Sbjct: 21 GKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVX 80
Query: 63 IWDAASGQCEQ--QFSFHSAPALDVDW 87
IW +G+ Q + HSA V W
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQW 107
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 9 SFLATGSYDGYARIWTSDGSL----KSTLGQHKGP--IFALKWNKRGNYI-LSAGVDKTT 61
S+ A+ S D IWT D K+ L + K P ++ W+ GN + LS G +K T
Sbjct: 220 SYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 279
Query: 62 IIWDAASGQCEQQFSFH 78
+ + G+ E H
Sbjct: 280 LWKENLEGKWEPAGEVH 296
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.1 bits (74), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 5 RNNGSFLATGSYDGYARIWTSDGSL-KSTLGQHKGPIFALKWNKRGNYILSAG---VDKT 60
R++G LA+G D +IW + S+ K T H + A+ W + +L+ G +DK
Sbjct: 226 RSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ 285
Query: 61 TIIWDAASG 69
W+AA+G
Sbjct: 286 IHFWNAATG 294
Score = 32.0 bits (71), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 32 TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV---DWQ 88
TL H + L W G + S G D IWDA S + + H+A V WQ
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ 271
Query: 89 SN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL 125
SN + + D+ IH + V + + ++V L
Sbjct: 272 SNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSL 309
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 8 GSFLATGSYDGYARIW-TSDGS--LKSTLGQHKGPIFALKWNKR--GNYILSAGVDKTTI 62
G+ LAT S D +I+ +G L + L H+GP++ + W GN + S D+ I
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84
Query: 63 IWDAASGQCEQ 73
IW +G E+
Sbjct: 85 IWREENGTWEK 95
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 9 SFLATGSYDGYARIWTSDGSLKST-----LGQHKGPIFALKWNKRGNYILSAGVDKTTII 63
S +A+ S DG IWT D + +T L + ++ + W+ N + +G D +
Sbjct: 229 STIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTL 288
Query: 64 W-DAASGQ 70
W ++ GQ
Sbjct: 289 WKESVDGQ 296
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 10 FLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS 68
LATGS D + ++W + ++T+ H + +++ + S D T +WDA S
Sbjct: 721 LLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATS 780
Query: 69 G 69
Sbjct: 781 A 781
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/75 (18%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 6 NNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+G +A+ D +++ ++ G + H+ + ++ +I + VDK IW
Sbjct: 631 EDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW 690
Query: 65 DAASGQCEQQFSFHS 79
++ +G+ + HS
Sbjct: 691 NSMTGELVHTYDEHS 705
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSL--------KSTLGQHKGPIFALKWNKRGNYILSAGV 57
+ + LATG +G RIW S+G L + H G + L ++ G ++SAG
Sbjct: 1144 DSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG- 1202
Query: 58 DKTTIIWDAASGQCEQQF 75
W+ +G+ Q F
Sbjct: 1203 -GYIKWWNVVTGESSQTF 1219
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 3 SSRNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTT 61
++++N LATGS D + ++W + ++T+ H + +++ + S D T
Sbjct: 715 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 774
Query: 62 IIWDAASG 69
+WD S
Sbjct: 775 RLWDVRSA 782
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+G +A+ D +++ ++ G + H+ + ++ +YI + DK IWD
Sbjct: 633 DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 692
Query: 66 AASGQCEQQFSFHS 79
+A+G+ + HS
Sbjct: 693 SATGKLVHTYDEHS 706
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 9 SFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
S L + S+DG ++W G ++ H+G + + + S DKT IW
Sbjct: 1063 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSL 29
+G LATG +G RIW SDG L
Sbjct: 1145 DGILLATGDDNGEIRIWNVSDGQL 1168
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 3 SSRNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTT 61
++++N LATGS D + ++W + ++T+ H + +++ + S D T
Sbjct: 708 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767
Query: 62 IIWDAASG 69
+WD S
Sbjct: 768 RLWDVRSA 775
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+G +A+ D +++ ++ G + H+ + ++ +YI + DK IWD
Sbjct: 626 DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685
Query: 66 AASGQCEQQFSFHS 79
+A+G+ + HS
Sbjct: 686 SATGKLVHTYDEHS 699
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 9 SFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
S L + S+DG ++W G ++ H+G + + + S DKT IW
Sbjct: 1056 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSL 29
+G LATG +G RIW SDG L
Sbjct: 1138 DGILLATGDDNGEIRIWNVSDGQL 1161
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 27 GSLKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDA--ASGQCEQQFSFHSAPAL 83
GS L H+ I A+ W+ R +YIL +A D +WD ASG C H+
Sbjct: 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG-CLITLDQHNGKKS 234
Query: 84 DVDWQSNTSFAS-----CSTDQHIHVCKLHSDKPVK 114
+NT+ C T +H+ + +D ++
Sbjct: 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 17/78 (21%)
Query: 10 FLATGSYDGYARIW-----------------TSDGSLKSTLGQHKGPIFALKWNKRGNYI 52
LAT S D ++W +++S H G + L + G ++
Sbjct: 201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260
Query: 53 LSAGVDKTTIIWDAASGQ 70
L+ G D +W++++G+
Sbjct: 261 LTVGTDNRMRLWNSSNGE 278
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 8 GSFLATGSYDGYARIW-----TSDGSLKSTLGQHKGPIFALKW--NKRGNYILSAGVDKT 60
G +AT S D + +++ TS+ L + H I A+ W + G I SA DKT
Sbjct: 23 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82
Query: 61 TIIWDAASGQCE 72
+W+ Q E
Sbjct: 83 VKLWEEDPDQEE 94
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 29 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
L S H G ++++ WN G + SAG D +W A
Sbjct: 298 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 335
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 93 FASCSTDQHIHVCKLHSD 110
A+CS+DQHI V KL D
Sbjct: 26 VATCSSDQHIKVFKLDKD 43
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 8 GSFLATGSYDGYARIW-----TSDGSLKSTLGQHKGPIFALKW--NKRGNYILSAGVDKT 60
G +AT S D + +++ TS+ L + H I A+ W + G I SA DKT
Sbjct: 23 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82
Query: 61 TIIWDAASGQCE 72
+W+ Q E
Sbjct: 83 VKLWEEDPDQEE 94
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 29 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
L S H G ++++ WN G + SAG D +W A
Sbjct: 298 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 335
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 93 FASCSTDQHIHVCKLHSD 110
A+CS+DQHI V KL D
Sbjct: 26 VATCSSDQHIKVFKLDKD 43
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 8 GSFLATGSYDGYARIW-----TSDGSLKSTLGQHKGPIFALKW--NKRGNYILSAGVDKT 60
G +AT S D + +++ TS+ L + H I A+ W + G I SA DKT
Sbjct: 21 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 80
Query: 61 TIIWDAASGQCE 72
+W+ Q E
Sbjct: 81 VKLWEEDPDQEE 92
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 29 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
L S H G ++++ WN G + SAG D +W A
Sbjct: 296 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 333
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 93 FASCSTDQHIHVCKLHSD 110
A+CS+DQHI V KL D
Sbjct: 24 VATCSSDQHIKVFKLDKD 41
>pdb|1PVX|A Chain A, Do-1,4-Beta-Xylanase, Room Temperature, Ph 4.5
Length = 194
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 14 GSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG 56
G +DGY W SDG ST + G + + W GN + G
Sbjct: 8 GWHDGYYYSWWSDGGGDSTYTNNSGGTYEITWGNGGNLVGGKG 50
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 29.3 bits (64), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 12 ATGS-YDGYARIW---TSDGSLKSTLGQHKGPIFALKW-NKRGNYILSAGVDKTTIIWDA 66
ATGS D IW ++ L++ H+ I +L W ++ + +LS+G D T ++W+
Sbjct: 233 ATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP 292
Query: 67 ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTD 99
S + QF PA +W T FA + D
Sbjct: 293 ESAEQLSQF-----PARG-NWCFKTKFAPEAPD 319
>pdb|1YNA|A Chain A, Endo-1,4-Beta-Xylanase, Room Temperature, Ph 4.0
Length = 194
Score = 29.3 bits (64), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 14 GSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG 56
G +DGY W SDG ++T +G + + W GN + G
Sbjct: 8 GWHDGYYYSWWSDGGAQATYTNLEGGTYEISWGDGGNLVGGKG 50
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND
INHIBITOR Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND
INHIBITOR Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two
Binding Sites For Nucleation Promoting Factor Wasp-Vca
On Arp23 COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With
Bound Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 33 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
L +H G + + W N I++ G D+ +W
Sbjct: 48 LKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVW 79
>pdb|1HPL|A Chain A, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
pdb|1HPL|B Chain B, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
Length = 449
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 47 KRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHV 104
++ +I+ +DK W S C+ F S + VDW+S + A Q++ +
Sbjct: 69 RKTRFIIHGFIDKGEESW--LSTMCQNMFKVESVNCICVDWKSGSRTAYSQASQNVRI 124
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
CO-Crystallized With Adp And Crosslinked With
Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
CO-Crystallized With Atp And Crosslinked With
Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
CO-Crystallized With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
CO-Crystallized With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
CO-Crystallized With Amp-Pnp And Calcium
Length = 372
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 33 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
L +H G + + W N I++ G D+ +W
Sbjct: 48 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 79
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 6 NNGSFLATGSYDGYARIW-TSDGSLK-STLGQHKGPIFALKWNKRG-NYILSAGVDKTTI 62
N +ATG DG IW G++ S L H+ ++ + ++ ++ + D +
Sbjct: 247 NQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLW 306
Query: 63 IWDAASGQCEQQFSFH 78
WDA++ E+ FH
Sbjct: 307 HWDASTDVPEKSSLFH 322
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,302,282
Number of Sequences: 62578
Number of extensions: 166084
Number of successful extensions: 760
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 338
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)