Query psy3840
Match_columns 131
No_of_seqs 215 out of 1934
Neff 11.7
Searched_HMMs 29240
Date Fri Aug 16 18:47:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3840.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3840hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 8.3E-28 2.8E-32 152.3 17.3 123 3-125 171-295 (321)
2 2ynn_A Coatomer subunit beta'; 100.0 3E-27 1E-31 148.6 16.6 124 3-126 20-146 (304)
3 1vyh_C Platelet-activating fac 100.0 4.6E-27 1.6E-31 153.1 17.0 124 3-126 115-240 (410)
4 4ery_A WD repeat-containing pr 99.9 1.2E-25 4.2E-30 141.4 18.7 123 3-125 30-154 (312)
5 3ow8_A WD repeat-containing pr 99.9 7.4E-26 2.5E-30 143.4 17.6 123 3-125 129-253 (321)
6 1vyh_C Platelet-activating fac 99.9 1E-25 3.4E-30 146.8 17.2 124 3-126 157-282 (410)
7 4gqb_B Methylosome protein 50; 99.9 1.7E-25 5.7E-30 143.1 17.5 124 3-126 134-263 (344)
8 2hes_X YDR267CP; beta-propelle 99.9 1.6E-25 5.5E-30 142.2 17.3 123 3-125 65-202 (330)
9 1got_B GT-beta; complex (GTP-b 99.9 3.6E-25 1.2E-29 141.0 18.6 124 3-126 191-318 (340)
10 3frx_A Guanine nucleotide-bind 99.9 1.2E-24 4.2E-29 137.6 18.7 125 3-127 114-245 (319)
11 3fm0_A Protein CIAO1; WDR39,SG 99.9 4.5E-25 1.5E-29 140.9 16.8 123 3-125 23-155 (345)
12 4gqb_B Methylosome protein 50; 99.9 2.9E-25 1E-29 141.9 15.8 114 3-117 89-209 (344)
13 2ynn_A Coatomer subunit beta'; 99.9 5.1E-25 1.7E-29 138.5 16.4 115 3-117 62-180 (304)
14 3vl1_A 26S proteasome regulato 99.9 3.1E-25 1.1E-29 144.1 15.9 117 3-119 104-222 (420)
15 3frx_A Guanine nucleotide-bind 99.9 5.9E-25 2E-29 139.0 16.7 122 3-125 24-153 (319)
16 4ery_A WD repeat-containing pr 99.9 3.4E-24 1.2E-28 134.8 18.8 115 3-117 72-188 (312)
17 2ymu_A WD-40 repeat protein; u 99.9 2.5E-24 8.6E-29 144.6 18.4 122 3-126 433-555 (577)
18 1got_B GT-beta; complex (GTP-b 99.9 3.4E-24 1.1E-28 136.6 18.1 124 3-126 62-190 (340)
19 3fm0_A Protein CIAO1; WDR39,SG 99.9 2.2E-24 7.5E-29 137.7 16.2 123 3-125 68-199 (345)
20 2pbi_B Guanine nucleotide-bind 99.9 5E-24 1.7E-28 136.5 17.9 117 3-119 161-281 (354)
21 2pm7_B Protein transport prote 99.9 4.4E-24 1.5E-28 133.8 16.7 122 3-124 16-149 (297)
22 2xzm_R RACK1; ribosome, transl 99.9 5.2E-24 1.8E-28 135.8 17.0 105 6-110 37-150 (343)
23 2pbi_B Guanine nucleotide-bind 99.9 1.3E-23 4.4E-28 134.6 18.8 121 6-126 208-332 (354)
24 1nr0_A Actin interacting prote 99.9 2.3E-24 7.7E-29 146.4 16.2 116 3-118 154-279 (611)
25 1erj_A Transcriptional repress 99.9 1.2E-23 4E-28 136.4 18.3 113 3-116 130-245 (393)
26 2aq5_A Coronin-1A; WD40 repeat 99.9 7.6E-24 2.6E-28 137.3 17.2 120 3-122 88-221 (402)
27 2hes_X YDR267CP; beta-propelle 99.9 4E-24 1.4E-28 135.8 15.3 108 3-110 114-231 (330)
28 2ymu_A WD-40 repeat protein; u 99.9 1.1E-23 3.9E-28 141.4 18.2 119 3-123 23-142 (577)
29 3iz6_a 40S ribosomal protein R 99.9 4.1E-24 1.4E-28 138.0 14.9 120 5-124 215-348 (380)
30 1erj_A Transcriptional repress 99.9 1.9E-23 6.5E-28 135.4 17.5 123 4-126 214-358 (393)
31 1nr0_A Actin interacting prote 99.9 1.5E-23 5.1E-28 142.4 17.6 122 3-124 197-371 (611)
32 4h5i_A Guanine nucleotide-exch 99.9 3.4E-24 1.1E-28 137.9 13.1 107 3-109 226-343 (365)
33 4g56_B MGC81050 protein; prote 99.9 3.1E-23 1.1E-27 133.0 15.2 124 3-126 146-275 (357)
34 2xzm_R RACK1; ribosome, transl 99.9 1.7E-22 5.9E-27 128.8 18.5 121 3-125 83-218 (343)
35 4g56_B MGC81050 protein; prote 99.9 3E-23 1E-27 133.1 15.0 123 3-126 49-187 (357)
36 3mkq_A Coatomer beta'-subunit; 99.9 5.7E-23 1.9E-27 142.5 16.9 123 3-125 20-145 (814)
37 3dwl_C Actin-related protein 2 99.9 3.3E-24 1.1E-28 137.6 9.9 123 3-125 18-151 (377)
38 3sfz_A APAF-1, apoptotic pepti 99.9 1.2E-22 4.2E-27 146.1 18.6 124 3-126 622-749 (1249)
39 3bg1_A Protein SEC13 homolog; 99.9 1E-23 3.5E-28 133.2 11.5 108 3-110 20-137 (316)
40 4e54_B DNA damage-binding prot 99.9 1.7E-23 5.7E-28 137.1 12.9 118 3-120 216-338 (435)
41 3mmy_A MRNA export factor; mRN 99.9 1.7E-22 5.9E-27 128.6 16.8 120 3-123 46-174 (368)
42 3iz6_a 40S ribosomal protein R 99.9 1.6E-22 5.5E-27 130.5 16.8 116 4-119 165-290 (380)
43 3ei3_B DNA damage-binding prot 99.9 8.2E-23 2.8E-27 131.5 15.1 117 3-120 170-293 (383)
44 3lrv_A PRE-mRNA-splicing facto 99.9 4.7E-23 1.6E-27 131.3 13.8 114 3-117 132-252 (343)
45 1gxr_A ESG1, transducin-like e 99.9 6.2E-22 2.1E-26 124.9 18.8 119 3-121 104-226 (337)
46 3dm0_A Maltose-binding peripla 99.9 1.6E-22 5.4E-27 138.9 17.3 122 3-124 479-607 (694)
47 3vl1_A 26S proteasome regulato 99.9 7.3E-23 2.5E-27 132.9 14.9 122 3-124 146-294 (420)
48 1sq9_A Antiviral protein SKI8; 99.9 2E-22 6.9E-27 129.9 16.8 114 3-117 193-330 (397)
49 3dwl_C Actin-related protein 2 99.9 2.5E-23 8.5E-28 133.5 12.4 122 3-125 107-256 (377)
50 3f3f_A Nucleoporin SEH1; struc 99.9 9.3E-23 3.2E-27 128.7 14.7 114 3-116 18-150 (351)
51 2j04_A TAU60, YPL007P, hypothe 99.9 5.4E-23 1.8E-27 137.4 14.1 117 3-122 92-228 (588)
52 3k26_A Polycomb protein EED; W 99.9 2.3E-23 7.8E-28 132.7 11.9 112 4-115 77-198 (366)
53 2pm7_B Protein transport prote 99.9 3.5E-22 1.2E-26 125.2 16.9 119 7-125 66-209 (297)
54 2oaj_A Protein SNI1; WD40 repe 99.9 7.8E-23 2.7E-27 144.0 15.4 112 3-114 442-610 (902)
55 3dm0_A Maltose-binding peripla 99.9 2.1E-22 7.1E-27 138.4 17.0 124 3-126 437-567 (694)
56 4gq1_A NUP37; propeller, trans 99.9 7.5E-24 2.6E-28 137.3 8.9 114 3-116 96-225 (393)
57 3jrp_A Fusion protein of prote 99.9 2.1E-22 7.3E-27 128.7 15.3 123 3-125 18-152 (379)
58 4e54_B DNA damage-binding prot 99.9 1.1E-22 3.7E-27 133.3 14.0 123 3-126 126-256 (435)
59 3gre_A Serine/threonine-protei 99.9 1.1E-22 3.7E-27 132.9 13.5 118 4-121 178-304 (437)
60 3odt_A Protein DOA1; ubiquitin 99.9 5.8E-22 2E-26 124.0 16.2 119 5-125 152-271 (313)
61 1gxr_A ESG1, transducin-like e 99.9 1.3E-21 4.3E-26 123.5 17.7 122 3-125 58-188 (337)
62 2j04_B YDR362CP, TAU91; beta p 99.9 8.4E-23 2.9E-27 136.7 12.9 122 4-126 274-403 (524)
63 4aez_A CDC20, WD repeat-contai 99.9 1.1E-21 3.6E-26 127.4 17.2 120 3-124 141-263 (401)
64 3mmy_A MRNA export factor; mRN 99.9 1.8E-21 6E-26 124.0 17.4 123 3-125 93-320 (368)
65 3odt_A Protein DOA1; ubiquitin 99.9 2.6E-22 8.9E-27 125.6 13.3 113 3-117 191-304 (313)
66 1k8k_C P40, ARP2/3 complex 41 99.9 1.4E-21 4.8E-26 124.9 16.9 122 3-124 103-248 (372)
67 3vu4_A KMHSV2; beta-propeller 99.9 7.9E-22 2.7E-26 126.4 14.9 102 9-110 148-272 (355)
68 1r5m_A SIR4-interacting protei 99.9 5.8E-22 2E-26 128.3 14.3 123 3-125 115-252 (425)
69 2oit_A Nucleoporin 214KDA; NH2 99.9 1.6E-22 5.4E-27 132.8 11.6 115 3-118 99-231 (434)
70 3f3f_A Nucleoporin SEH1; struc 99.9 2.1E-21 7.3E-26 122.5 15.9 108 3-110 64-250 (351)
71 1r5m_A SIR4-interacting protei 99.9 1.5E-21 5.2E-26 126.3 15.4 118 3-121 254-393 (425)
72 3ei3_B DNA damage-binding prot 99.9 2.5E-21 8.5E-26 124.6 16.1 120 3-124 125-254 (383)
73 1sq9_A Antiviral protein SKI8; 99.9 9.5E-22 3.2E-26 126.8 14.2 109 3-111 240-397 (397)
74 1k8k_C P40, ARP2/3 complex 41 99.9 2E-21 6.8E-26 124.2 15.1 109 3-111 15-129 (372)
75 1pgu_A Actin interacting prote 99.9 1E-21 3.4E-26 132.5 14.2 107 3-109 495-614 (615)
76 3v7d_B Cell division control p 99.9 3.6E-21 1.2E-25 126.6 16.4 108 4-112 128-239 (464)
77 2pm9_A Protein WEB1, protein t 99.9 1.3E-21 4.5E-26 126.7 14.1 117 3-119 74-207 (416)
78 2aq5_A Coronin-1A; WD40 repeat 99.9 3E-21 1E-25 125.2 15.7 114 12-125 51-181 (402)
79 3i2n_A WD repeat-containing pr 99.9 3E-21 1E-25 122.7 15.3 122 4-125 176-326 (357)
80 3zwl_B Eukaryotic translation 99.9 5.7E-21 1.9E-25 121.7 16.7 108 3-111 39-153 (369)
81 3dw8_B Serine/threonine-protei 99.9 1.4E-21 4.9E-26 127.6 14.2 117 3-121 184-328 (447)
82 4aez_A CDC20, WD repeat-contai 99.9 5.7E-21 1.9E-25 123.9 16.8 118 7-124 185-308 (401)
83 3v7d_B Cell division control p 99.9 4.9E-21 1.7E-25 125.9 16.6 114 3-117 275-389 (464)
84 2oaj_A Protein SNI1; WD40 repe 99.9 1.8E-21 6.2E-26 137.1 15.3 109 3-113 24-133 (902)
85 2xyi_A Probable histone-bindin 99.9 7.7E-21 2.6E-25 124.4 17.0 123 3-125 188-326 (430)
86 3jro_A Fusion protein of prote 99.9 2.7E-21 9.1E-26 134.1 15.6 123 3-125 16-150 (753)
87 2pm9_A Protein WEB1, protein t 99.9 2.7E-21 9.2E-26 125.2 14.6 121 3-123 172-308 (416)
88 2vdu_B TRNA (guanine-N(7)-)-me 99.9 3E-21 1E-25 126.9 15.0 123 3-125 109-246 (450)
89 3lrv_A PRE-mRNA-splicing facto 99.9 6.3E-21 2.2E-25 121.5 16.0 116 11-126 88-220 (343)
90 2vdu_B TRNA (guanine-N(7)-)-me 99.9 3.4E-21 1.2E-25 126.6 15.0 116 3-119 156-281 (450)
91 1pgu_A Actin interacting prote 99.9 4.4E-21 1.5E-25 129.4 15.9 119 8-126 456-590 (615)
92 4aow_A Guanine nucleotide-bind 99.9 2.3E-20 7.8E-25 118.0 18.0 110 7-117 184-294 (340)
93 3gre_A Serine/threonine-protei 99.9 1.1E-20 3.7E-25 123.5 16.8 123 3-125 118-262 (437)
94 4h5i_A Guanine nucleotide-exch 99.9 7E-21 2.4E-25 122.5 15.6 124 3-126 183-318 (365)
95 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1E-20 3.4E-25 124.1 16.4 121 3-126 124-245 (445)
96 3zwl_B Eukaryotic translation 99.9 2.4E-20 8.1E-25 118.8 17.7 122 3-125 182-320 (369)
97 4aow_A Guanine nucleotide-bind 99.9 2.7E-20 9.2E-25 117.7 17.6 122 3-124 135-261 (340)
98 2j04_B YDR362CP, TAU91; beta p 99.9 1.4E-21 4.9E-26 130.8 12.3 112 8-120 225-353 (524)
99 3k26_A Polycomb protein EED; W 99.9 1.2E-20 4.3E-25 120.1 16.1 119 8-126 34-167 (366)
100 2xyi_A Probable histone-bindin 99.9 1.3E-20 4.6E-25 123.3 16.4 122 3-124 238-382 (430)
101 1p22_A F-BOX/WD-repeat protein 99.9 1.1E-20 3.7E-25 123.7 16.0 120 3-125 138-261 (435)
102 3dw8_B Serine/threonine-protei 99.9 2.3E-21 7.9E-26 126.6 12.6 122 3-125 35-231 (447)
103 2j04_A TAU60, YPL007P, hypothe 99.9 6.2E-21 2.1E-25 127.6 14.4 118 3-124 136-269 (588)
104 3jrp_A Fusion protein of prote 99.9 2.1E-20 7.3E-25 119.5 16.4 122 4-125 63-211 (379)
105 3mkq_A Coatomer beta'-subunit; 99.9 5.5E-21 1.9E-25 132.7 14.1 117 3-119 62-182 (814)
106 3bg1_A Protein SEC13 homolog; 99.9 8.8E-21 3E-25 119.8 13.5 111 8-118 179-305 (316)
107 1yfq_A Cell cycle arrest prote 99.9 2E-21 7E-26 123.0 10.1 114 3-117 18-148 (342)
108 2w18_A PALB2, fancn, partner a 99.9 1.3E-20 4.5E-25 119.5 13.6 115 7-123 192-328 (356)
109 3sfz_A APAF-1, apoptotic pepti 99.9 3E-20 1E-24 133.8 17.2 115 3-117 664-782 (1249)
110 1yfq_A Cell cycle arrest prote 99.9 8.8E-20 3E-24 115.5 17.1 121 4-126 158-300 (342)
111 3i2n_A WD repeat-containing pr 99.9 7.3E-20 2.5E-24 116.3 16.1 115 3-117 72-207 (357)
112 4a11_B DNA excision repair pro 99.9 6.3E-20 2.1E-24 118.3 15.7 115 3-117 193-373 (408)
113 4a11_B DNA excision repair pro 99.9 1.1E-19 3.9E-24 117.1 16.9 123 3-126 50-192 (408)
114 4gga_A P55CDC, cell division c 99.9 5.9E-20 2E-24 119.8 15.5 115 4-119 284-405 (420)
115 4gga_A P55CDC, cell division c 99.9 2.4E-19 8.3E-24 116.9 18.2 121 3-126 112-236 (420)
116 3jro_A Fusion protein of prote 99.9 7.1E-20 2.4E-24 127.0 16.1 123 4-126 61-210 (753)
117 1p22_A F-BOX/WD-repeat protein 99.8 1.8E-19 6.3E-24 117.9 16.5 119 5-126 180-302 (435)
118 4gq1_A NUP37; propeller, trans 99.8 1E-20 3.6E-25 122.6 9.6 114 7-120 155-297 (393)
119 4ggc_A P55CDC, cell division c 99.8 1.3E-19 4.6E-24 113.6 14.4 100 12-111 215-317 (318)
120 4ggc_A P55CDC, cell division c 99.8 1E-18 3.6E-23 109.5 18.2 120 3-125 32-155 (318)
121 2w18_A PALB2, fancn, partner a 99.8 4.7E-20 1.6E-24 117.0 11.5 103 3-107 233-355 (356)
122 2ovr_B FBW7, F-BOX/WD repeat p 99.8 3.3E-19 1.1E-23 116.9 15.4 114 7-123 208-322 (445)
123 3vu4_A KMHSV2; beta-propeller 99.8 1.5E-19 5.3E-24 115.8 12.1 108 3-110 202-337 (355)
124 3bws_A Protein LP49; two-domai 99.8 1.7E-18 5.7E-23 112.9 14.0 123 3-125 129-259 (433)
125 1l0q_A Surface layer protein; 99.8 7.1E-17 2.4E-21 104.0 17.7 122 3-126 38-164 (391)
126 1l0q_A Surface layer protein; 99.8 8.5E-17 2.9E-21 103.6 16.3 117 9-127 3-123 (391)
127 3bws_A Protein LP49; two-domai 99.8 8.2E-17 2.8E-21 104.9 15.6 114 3-117 176-300 (433)
128 2hqs_A Protein TOLB; TOLB, PAL 99.7 5.2E-16 1.8E-20 101.4 17.2 109 3-112 185-303 (415)
129 2oit_A Nucleoporin 214KDA; NH2 99.7 8.7E-17 3E-21 105.7 12.6 107 3-110 156-279 (434)
130 2hqs_A Protein TOLB; TOLB, PAL 99.7 2.5E-15 8.4E-20 98.2 16.7 112 8-121 143-267 (415)
131 1nir_A Nitrite reductase; hemo 99.7 3.9E-15 1.3E-19 100.3 15.3 114 3-118 144-266 (543)
132 2ecf_A Dipeptidyl peptidase IV 99.6 8.1E-15 2.8E-19 101.3 13.9 113 3-117 43-189 (741)
133 1k32_A Tricorn protease; prote 99.6 2.8E-14 9.6E-19 102.1 15.5 117 3-121 344-472 (1045)
134 2ojh_A Uncharacterized protein 99.6 1.6E-14 5.6E-19 89.2 12.0 110 3-112 135-261 (297)
135 3vgz_A Uncharacterized protein 99.6 1.6E-13 5.4E-18 87.1 16.7 123 3-127 191-321 (353)
136 3o4h_A Acylamino-acid-releasin 99.6 2.2E-15 7.5E-20 101.9 8.3 108 3-113 156-278 (582)
137 3u4y_A Uncharacterized protein 99.6 2.1E-13 7E-18 86.1 16.7 123 4-127 5-135 (331)
138 2ecf_A Dipeptidyl peptidase IV 99.6 4.8E-14 1.6E-18 97.5 14.8 96 3-100 115-230 (741)
139 1xfd_A DIP, dipeptidyl aminope 99.6 7.6E-15 2.6E-19 101.1 9.1 113 3-118 23-152 (723)
140 1nir_A Nitrite reductase; hemo 99.6 3.2E-13 1.1E-17 91.1 16.0 111 3-114 185-316 (543)
141 3vgz_A Uncharacterized protein 99.6 2.8E-13 9.6E-18 86.0 14.8 116 3-118 147-271 (353)
142 1xfd_A DIP, dipeptidyl aminope 99.6 8.4E-14 2.9E-18 96.0 11.9 115 3-118 67-246 (723)
143 3u4y_A Uncharacterized protein 99.5 1.2E-12 4.2E-17 82.5 16.0 118 3-121 90-222 (331)
144 1jmx_B Amine dehydrogenase; ox 99.5 3.3E-13 1.1E-17 85.4 12.5 109 3-111 6-136 (349)
145 2ojh_A Uncharacterized protein 99.5 3E-12 1E-16 79.0 15.6 118 3-121 91-217 (297)
146 2z3z_A Dipeptidyl aminopeptida 99.5 5.6E-13 1.9E-17 91.8 13.4 122 3-124 187-358 (706)
147 1pby_B Quinohemoprotein amine 99.5 1.4E-12 4.6E-17 82.2 13.9 114 3-119 40-173 (337)
148 1ri6_A Putative isomerase YBHE 99.5 7.7E-13 2.6E-17 83.5 12.5 108 3-112 44-164 (343)
149 1z68_A Fibroblast activation p 99.5 1.2E-13 4.2E-18 95.3 9.1 109 3-114 22-144 (719)
150 3o4h_A Acylamino-acid-releasin 99.5 2.3E-13 7.7E-18 92.1 10.2 114 3-120 116-237 (582)
151 2z3z_A Dipeptidyl aminopeptida 99.5 6.9E-13 2.4E-17 91.4 12.4 111 3-114 127-298 (706)
152 1ri6_A Putative isomerase YBHE 99.5 6.7E-12 2.3E-16 79.2 15.5 117 3-119 135-276 (343)
153 1k32_A Tricorn protease; prote 99.5 1E-12 3.5E-17 94.2 12.8 117 3-122 302-422 (1045)
154 1z68_A Fibroblast activation p 99.5 1.7E-13 5.7E-18 94.6 8.2 93 3-99 66-189 (719)
155 1pby_B Quinohemoprotein amine 99.5 2.6E-12 8.8E-17 80.9 13.0 110 9-118 2-133 (337)
156 3azo_A Aminopeptidase; POP fam 99.5 8.2E-13 2.8E-17 90.4 11.5 112 3-114 136-279 (662)
157 3scy_A Hypothetical bacterial 99.5 3E-12 1E-16 81.9 13.4 111 3-114 217-344 (361)
158 1jmx_B Amine dehydrogenase; ox 99.5 6.4E-12 2.2E-16 79.5 14.0 78 39-119 256-335 (349)
159 3hfq_A Uncharacterized protein 99.4 2.9E-12 9.8E-17 81.5 11.4 108 3-111 46-174 (347)
160 3pe7_A Oligogalacturonate lyas 99.4 1.5E-11 5.2E-16 79.1 14.8 114 3-116 42-184 (388)
161 3scy_A Hypothetical bacterial 99.4 3.2E-11 1.1E-15 77.1 16.1 106 3-108 161-290 (361)
162 3hfq_A Uncharacterized protein 99.4 1.3E-11 4.4E-16 78.5 14.1 111 3-113 193-323 (347)
163 1q7f_A NHL, brain tumor CG1071 99.4 2E-11 7E-16 75.7 14.3 108 3-111 170-282 (286)
164 4a5s_A Dipeptidyl peptidase 4 99.4 1E-12 3.6E-17 91.2 8.7 108 3-114 23-146 (740)
165 2xdw_A Prolyl endopeptidase; a 99.4 2.5E-11 8.7E-16 84.0 14.1 107 3-109 131-268 (710)
166 4a5s_A Dipeptidyl peptidase 4 99.4 2.2E-11 7.6E-16 84.7 13.5 94 3-97 68-189 (740)
167 1q7f_A NHL, brain tumor CG1071 99.3 3.6E-10 1.2E-14 70.0 16.5 115 3-119 127-247 (286)
168 3fvz_A Peptidyl-glycine alpha- 99.3 2.2E-10 7.5E-15 72.7 15.6 114 3-117 97-235 (329)
169 1xip_A Nucleoporin NUP159; bet 99.3 8E-11 2.7E-15 76.4 13.5 102 7-116 96-200 (388)
170 2bkl_A Prolyl endopeptidase; m 99.3 7.5E-11 2.6E-15 81.5 12.8 108 3-111 127-263 (695)
171 3azo_A Aminopeptidase; POP fam 99.3 1.3E-10 4.6E-15 79.6 13.5 105 5-110 87-228 (662)
172 1jof_A Carboxy-CIS,CIS-muconat 99.3 5.9E-11 2E-15 76.2 11.0 108 3-112 46-180 (365)
173 1jof_A Carboxy-CIS,CIS-muconat 99.3 2.6E-10 8.8E-15 73.3 14.0 110 3-112 89-229 (365)
174 3fvz_A Peptidyl-glycine alpha- 99.3 1.3E-10 4.6E-15 73.7 12.0 114 3-117 149-285 (329)
175 2dg1_A DRP35, lactonase; beta 99.3 2.5E-09 8.6E-14 67.5 17.0 109 3-111 51-173 (333)
176 2oiz_A Aromatic amine dehydrog 99.2 1E-09 3.4E-14 70.7 14.4 111 5-118 208-345 (361)
177 2oiz_A Aromatic amine dehydrog 99.2 4.6E-10 1.6E-14 72.2 11.7 108 6-115 13-146 (361)
178 2gop_A Trilobed protease; beta 99.2 1.7E-09 5.9E-14 68.6 13.6 92 3-97 65-188 (347)
179 3no2_A Uncharacterized protein 99.2 1.4E-09 4.7E-14 67.7 12.7 107 7-117 4-115 (276)
180 3no2_A Uncharacterized protein 99.2 1.9E-09 6.5E-14 67.1 12.9 113 4-118 84-204 (276)
181 1qks_A Cytochrome CD1 nitrite 99.2 4.6E-09 1.6E-13 71.4 15.7 110 6-117 165-283 (567)
182 3c5m_A Oligogalacturonate lyas 99.2 3.2E-10 1.1E-14 72.9 9.6 114 3-116 42-184 (396)
183 1yr2_A Prolyl oligopeptidase; 99.1 1.3E-09 4.6E-14 75.9 12.8 107 3-110 169-304 (741)
184 3e5z_A Putative gluconolactona 99.1 1.3E-08 4.4E-13 63.4 15.1 115 4-121 122-257 (296)
185 2gop_A Trilobed protease; beta 99.1 6.7E-09 2.3E-13 65.9 13.4 104 7-116 23-168 (347)
186 3e5z_A Putative gluconolactona 99.1 7.3E-09 2.5E-13 64.6 13.4 92 3-95 34-130 (296)
187 1qks_A Cytochrome CD1 nitrite 99.1 2.1E-08 7.1E-13 68.2 16.3 114 3-117 203-381 (567)
188 1xip_A Nucleoporin NUP159; bet 99.1 6.1E-09 2.1E-13 67.7 12.4 105 3-113 44-159 (388)
189 1rwi_B Serine/threonine-protei 99.1 9.1E-09 3.1E-13 63.1 12.7 108 4-111 157-266 (270)
190 3sjl_D Methylamine dehydrogena 99.1 6.9E-09 2.4E-13 67.3 12.5 113 4-118 40-178 (386)
191 2dg1_A DRP35, lactonase; beta 99.0 1.9E-09 6.6E-14 68.1 9.1 109 3-113 12-125 (333)
192 1rwi_B Serine/threonine-protei 99.0 4E-08 1.4E-12 60.2 14.1 108 4-112 74-183 (270)
193 3dsm_A Uncharacterized protein 99.0 5.2E-08 1.8E-12 61.9 14.4 116 4-122 179-314 (328)
194 3pe7_A Oligogalacturonate lyas 99.0 1.4E-08 5E-13 65.2 11.9 95 27-121 20-123 (388)
195 3hrp_A Uncharacterized protein 98.9 5.4E-08 1.8E-12 63.7 12.7 108 3-111 137-251 (409)
196 2mad_H Methylamine dehydrogena 98.9 1.5E-07 5E-12 61.0 14.5 110 5-117 29-165 (373)
197 3c5m_A Oligogalacturonate lyas 98.9 5E-08 1.7E-12 62.7 12.0 107 3-112 244-387 (396)
198 3dsm_A Uncharacterized protein 98.9 1.3E-07 4.3E-12 60.1 13.4 108 9-118 55-170 (328)
199 2xdw_A Prolyl endopeptidase; a 98.9 2.1E-07 7.2E-12 64.6 14.6 119 3-122 239-381 (710)
200 3iuj_A Prolyl endopeptidase; h 98.9 6.1E-08 2.1E-12 67.3 11.8 114 3-117 135-277 (693)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 98.8 3.3E-07 1.1E-11 57.2 13.7 115 4-119 124-266 (314)
202 2hz6_A Endoplasmic reticulum t 98.8 3E-10 1E-14 73.3 -0.3 111 7-119 8-121 (369)
203 3c75_H MADH, methylamine dehyd 98.8 1.1E-07 3.8E-12 62.5 11.7 111 6-118 82-218 (426)
204 2bkl_A Prolyl endopeptidase; m 98.8 5.1E-07 1.7E-11 62.6 15.0 107 3-111 174-306 (695)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 98.8 3.4E-07 1.2E-11 57.2 12.8 104 6-109 185-299 (314)
206 3g4e_A Regucalcin; six bladed 98.8 1.2E-06 4.2E-11 54.7 15.1 123 4-127 105-248 (297)
207 2z2n_A Virginiamycin B lyase; 98.7 5.8E-06 2E-10 51.1 16.3 105 4-111 22-130 (299)
208 2z2n_A Virginiamycin B lyase; 98.7 3E-06 1E-10 52.4 14.8 108 4-113 64-174 (299)
209 2hz6_A Endoplasmic reticulum t 98.7 2.2E-08 7.6E-13 64.6 5.0 108 7-120 91-203 (369)
210 2mad_H Methylamine dehydrogena 98.7 4.9E-06 1.7E-10 53.9 15.6 110 6-116 222-357 (373)
211 3sjl_D Methylamine dehydrogena 98.7 1.1E-06 3.8E-11 57.1 12.5 119 6-126 236-380 (386)
212 3g4e_A Regucalcin; six bladed 98.6 1.1E-06 3.7E-11 55.0 11.6 95 3-97 155-261 (297)
213 3c75_H MADH, methylamine dehyd 98.6 1.1E-06 3.9E-11 57.8 11.5 112 4-116 272-409 (426)
214 1yr2_A Prolyl oligopeptidase; 98.6 6.1E-06 2.1E-10 57.7 15.7 106 3-110 215-351 (741)
215 3dr2_A Exported gluconolactona 98.6 2.8E-06 9.7E-11 53.2 12.9 108 3-112 51-181 (305)
216 2ghs_A AGR_C_1268P; regucalcin 98.6 1.7E-05 5.9E-10 50.2 16.3 114 4-120 141-270 (326)
217 1kb0_A Quinohemoprotein alcoho 98.6 2.4E-06 8.1E-11 59.4 12.3 110 9-119 328-517 (677)
218 3dr2_A Exported gluconolactona 98.6 5.3E-06 1.8E-10 52.0 12.8 120 4-126 138-283 (305)
219 1mda_H Methylamine dehydrogena 98.5 4.4E-06 1.5E-10 54.1 12.0 119 6-126 220-363 (368)
220 1yiq_A Quinohemoprotein alcoho 98.5 4.5E-06 1.5E-10 58.1 12.7 60 59-119 455-515 (689)
221 3hrp_A Uncharacterized protein 98.5 1.1E-05 3.7E-10 52.9 13.7 103 3-107 273-408 (409)
222 2qe8_A Uncharacterized protein 98.5 9.3E-06 3.2E-10 51.8 13.1 116 3-118 23-163 (343)
223 2qc5_A Streptogramin B lactona 98.5 3.9E-05 1.3E-09 47.3 16.5 107 4-112 27-136 (300)
224 2ghs_A AGR_C_1268P; regucalcin 98.5 1.4E-05 4.8E-10 50.6 13.4 101 3-106 55-167 (326)
225 2ece_A 462AA long hypothetical 98.5 5.1E-05 1.8E-09 50.3 15.8 112 6-118 93-246 (462)
226 2qc5_A Streptogramin B lactona 98.4 5.3E-05 1.8E-09 46.7 16.5 107 4-112 69-178 (300)
227 3q7m_A Lipoprotein YFGL, BAMB; 98.4 3.8E-05 1.3E-09 49.3 13.6 111 7-119 52-172 (376)
228 1mda_H Methylamine dehydrogena 98.4 5.2E-06 1.8E-10 53.8 9.4 100 8-109 31-158 (368)
229 2iwa_A Glutamine cyclotransfer 98.4 2.2E-05 7.4E-10 48.6 11.7 111 4-117 28-143 (266)
230 3hxj_A Pyrrolo-quinoline quino 98.4 1.2E-05 4.1E-10 50.5 10.9 105 8-117 107-211 (330)
231 3iuj_A Prolyl endopeptidase; h 98.3 0.0001 3.6E-09 51.3 15.7 116 3-120 181-327 (693)
232 3hxj_A Pyrrolo-quinoline quino 98.3 1.8E-05 6.3E-10 49.6 11.1 104 9-117 148-251 (330)
233 3nok_A Glutaminyl cyclase; bet 98.2 4.3E-05 1.5E-09 47.2 11.0 106 8-118 65-173 (268)
234 2ad6_A Methanol dehydrogenase 98.2 5.2E-05 1.8E-09 51.8 12.4 61 58-119 443-504 (571)
235 3nol_A Glutamine cyclotransfer 98.2 3.9E-05 1.3E-09 47.3 10.6 107 7-118 52-164 (262)
236 2iwa_A Glutamine cyclotransfer 98.2 8.2E-05 2.8E-09 46.1 12.0 106 4-110 112-238 (266)
237 3q7m_A Lipoprotein YFGL, BAMB; 98.2 0.00018 6.1E-09 46.2 14.0 106 8-118 239-346 (376)
238 1fwx_A Nitrous oxide reductase 98.2 5.5E-05 1.9E-09 51.7 11.5 83 39-122 278-384 (595)
239 1flg_A Protein (quinoprotein e 98.1 8.2E-05 2.8E-09 51.0 12.0 61 58-119 465-526 (582)
240 2qe8_A Uncharacterized protein 98.1 0.00032 1.1E-08 44.7 13.6 73 40-112 197-281 (343)
241 3mbr_X Glutamine cyclotransfer 98.1 0.00029 9.9E-09 43.1 12.3 108 8-118 31-142 (243)
242 2xe4_A Oligopeptidase B; hydro 98.0 0.0001 3.5E-09 51.9 11.1 107 3-110 180-305 (751)
243 1w6s_A Methanol dehydrogenase 98.0 0.00049 1.7E-08 47.4 13.0 61 58-119 452-513 (599)
244 1kv9_A Type II quinohemoprotei 97.9 0.0002 6.7E-09 49.9 11.0 61 58-119 437-498 (668)
245 1yiq_A Quinohemoprotein alcoho 97.9 0.00051 1.7E-08 48.0 13.0 71 4-74 242-344 (689)
246 1npe_A Nidogen, entactin; glyc 97.9 0.00089 3E-08 41.0 17.3 107 4-111 86-200 (267)
247 3nok_A Glutaminyl cyclase; bet 97.9 0.00074 2.5E-08 41.8 12.2 109 6-118 103-219 (268)
248 2fp8_A Strictosidine synthase; 97.9 0.0012 4E-08 41.6 15.4 107 4-112 26-177 (322)
249 1npe_A Nidogen, entactin; glyc 97.9 0.0012 3.9E-08 40.5 16.0 113 4-118 129-247 (267)
250 3nol_A Glutamine cyclotransfer 97.9 0.00048 1.6E-08 42.5 10.6 109 6-118 94-210 (262)
251 2ece_A 462AA long hypothetical 97.8 0.0006 2E-08 45.4 11.1 106 4-110 145-290 (462)
252 3tc9_A Hypothetical hydrolase; 97.8 0.0015 5.1E-08 43.2 12.9 107 4-112 144-260 (430)
253 1fwx_A Nitrous oxide reductase 97.8 0.0001 3.5E-09 50.4 7.1 108 3-111 283-433 (595)
254 1kb0_A Quinohemoprotein alcoho 97.8 0.0011 3.7E-08 46.3 12.3 110 8-117 174-354 (677)
255 3mbr_X Glutamine cyclotransfer 97.7 0.0021 7.3E-08 39.3 12.0 107 7-117 73-187 (243)
256 2p4o_A Hypothetical protein; p 97.5 0.0053 1.8E-07 38.4 15.3 107 3-110 38-148 (306)
257 2fp8_A Strictosidine synthase; 97.5 0.004 1.4E-07 39.2 11.5 104 3-109 191-313 (322)
258 3amr_A 3-phytase; beta-propell 97.5 0.0066 2.3E-07 39.2 12.9 119 7-128 39-188 (355)
259 3qqz_A Putative uncharacterize 97.5 0.0061 2.1E-07 37.5 12.0 105 3-107 33-149 (255)
260 1kv9_A Type II quinohemoprotei 97.4 0.008 2.8E-07 42.0 12.9 110 8-117 162-341 (668)
261 3pbp_A Nucleoporin NUP82; beta 97.4 0.011 3.7E-07 39.3 13.3 101 4-105 73-208 (452)
262 3qqz_A Putative uncharacterize 97.3 0.009 3.1E-07 36.8 11.8 104 3-107 127-251 (255)
263 1w6s_A Methanol dehydrogenase 97.3 0.0036 1.2E-07 43.2 10.0 110 8-118 62-200 (599)
264 2xe4_A Oligopeptidase B; hydro 97.3 0.021 7.1E-07 40.4 15.5 107 3-109 227-354 (751)
265 3tc9_A Hypothetical hydrolase; 97.2 0.014 4.9E-07 38.5 11.8 105 3-108 185-300 (430)
266 1tl2_A L10, protein (tachylect 97.2 0.0025 8.7E-08 38.5 7.4 97 3-105 47-159 (236)
267 4hw6_A Hypothetical protein, I 97.2 0.017 5.9E-07 38.2 11.8 108 4-112 146-262 (433)
268 1k3i_A Galactose oxidase precu 97.1 0.014 4.8E-07 40.6 11.4 105 7-112 197-326 (656)
269 2p9w_A MAL S 1 allergenic prot 97.1 0.022 7.5E-07 36.5 12.5 105 5-110 74-216 (334)
270 3pbp_A Nucleoporin NUP82; beta 97.1 0.03 1E-06 37.2 13.1 102 7-110 31-159 (452)
271 2ad6_A Methanol dehydrogenase 97.0 0.015 5.2E-07 39.9 10.6 108 8-118 62-194 (571)
272 2be1_A Serine/threonine-protei 96.9 0.0018 6.1E-08 41.6 5.1 111 8-118 10-139 (339)
273 3sov_A LRP-6, low-density lipo 96.8 0.041 1.4E-06 34.9 14.8 112 5-116 130-245 (318)
274 4a2l_A BT_4663, two-component 96.7 0.098 3.4E-06 37.2 14.9 103 7-112 416-529 (795)
275 3v65_B Low-density lipoprotein 96.6 0.067 2.3E-06 34.8 14.6 101 10-110 173-278 (386)
276 2p9w_A MAL S 1 allergenic prot 96.6 0.065 2.2E-06 34.4 12.8 105 4-108 20-167 (334)
277 1flg_A Protein (quinoprotein e 96.6 0.01 3.4E-07 40.9 7.1 75 17-92 465-541 (582)
278 3v64_C Agrin; beta propeller, 96.6 0.068 2.3E-06 34.3 15.0 112 4-116 166-282 (349)
279 3v64_C Agrin; beta propeller, 96.4 0.083 2.8E-06 33.9 15.7 102 9-110 129-235 (349)
280 3v65_B Low-density lipoprotein 96.4 0.093 3.2E-06 34.1 14.6 101 9-110 88-191 (386)
281 4a2l_A BT_4663, two-component 96.4 0.16 5.3E-06 36.2 16.0 100 10-111 369-482 (795)
282 1ijq_A LDL receptor, low-densi 96.4 0.088 3E-06 33.2 15.8 99 10-109 91-195 (316)
283 3p5b_L Low density lipoprotein 96.3 0.11 3.7E-06 34.1 16.0 103 8-110 171-278 (400)
284 1n7d_A LDL receptor, low-densi 96.3 0.032 1.1E-06 39.3 8.3 114 4-117 503-622 (699)
285 2ism_A Putative oxidoreductase 96.2 0.12 4.1E-06 33.2 12.6 92 3-96 37-151 (352)
286 4hw6_A Hypothetical protein, I 96.2 0.052 1.8E-06 36.0 8.6 70 39-108 229-303 (433)
287 1n7d_A LDL receptor, low-densi 96.2 0.028 9.7E-07 39.5 7.6 101 9-109 466-571 (699)
288 3v9f_A Two-component system se 96.1 0.23 8E-06 35.2 14.7 101 9-111 418-526 (781)
289 3kya_A Putative phosphatase; s 95.9 0.21 7.3E-06 33.8 12.1 104 4-108 146-277 (496)
290 3p5b_L Low density lipoprotein 95.9 0.19 6.6E-06 32.8 16.3 101 10-111 85-192 (400)
291 3sov_A LRP-6, low-density lipo 95.9 0.17 5.7E-06 32.1 16.2 101 9-109 92-197 (318)
292 1tl2_A L10, protein (tachylect 95.8 0.12 4.3E-06 31.3 8.1 97 7-108 3-115 (236)
293 2p4o_A Hypothetical protein; p 95.8 0.17 5.9E-06 31.5 11.7 73 38-112 32-107 (306)
294 3m0c_C LDL receptor, low-densi 95.6 0.39 1.3E-05 34.5 16.8 104 7-110 481-590 (791)
295 1ijq_A LDL receptor, low-densi 95.6 0.21 7.2E-06 31.4 15.3 100 10-110 3-109 (316)
296 3kya_A Putative phosphatase; s 95.6 0.31 1.1E-05 33.1 11.2 103 4-107 200-339 (496)
297 3a9g_A Putative uncharacterize 95.5 0.27 9.1E-06 31.7 13.1 93 3-96 35-151 (354)
298 3m0c_C LDL receptor, low-densi 95.4 0.48 1.6E-05 34.1 15.4 99 12-110 440-547 (791)
299 4a0p_A LRP6, LRP-6, low-densit 95.2 0.49 1.7E-05 33.0 15.6 112 5-117 131-245 (628)
300 1k3i_A Galactose oxidase precu 95.1 0.17 5.8E-06 35.3 8.2 92 7-98 410-530 (656)
301 2g8s_A Glucose/sorbosone dehyd 95.1 0.36 1.2E-05 31.0 13.1 94 3-96 24-146 (353)
302 3v9f_A Two-component system se 95.0 0.64 2.2E-05 33.0 14.8 100 9-111 374-480 (781)
303 2xzh_A Clathrin heavy chain 1; 94.9 0.42 1.5E-05 30.9 13.5 106 18-123 180-304 (365)
304 4a0p_A LRP6, LRP-6, low-densit 94.8 0.67 2.3E-05 32.4 16.1 107 4-110 44-156 (628)
305 3s94_A LRP-6, low-density lipo 94.5 0.77 2.6E-05 32.0 13.1 106 5-110 92-203 (619)
306 2xbg_A YCF48-like protein; pho 94.4 0.55 1.9E-05 29.7 13.1 70 35-106 160-231 (327)
307 2vpj_A Kelch-like protein 12; 93.9 0.64 2.2E-05 28.7 8.2 101 7-111 159-280 (301)
308 2xbg_A YCF48-like protein; pho 93.9 0.72 2.5E-05 29.2 13.3 99 4-103 170-273 (327)
309 2xn4_A Kelch-like protein 2; s 93.7 0.58 2E-05 28.9 7.8 63 48-112 204-279 (302)
310 3sbq_A Nitrous-oxide reductase 93.5 1.3 4.4E-05 30.9 9.4 83 39-122 324-431 (638)
311 3sbq_A Nitrous-oxide reductase 93.1 1.2 4.2E-05 31.0 8.8 64 4-68 330-408 (638)
312 2xzh_A Clathrin heavy chain 1; 92.9 1.2 4.1E-05 28.9 9.7 74 37-110 259-333 (365)
313 3amr_A 3-phytase; beta-propell 92.7 1.3 4.4E-05 28.8 13.7 107 10-117 145-272 (355)
314 4gq2_M Nucleoporin NUP120; bet 91.2 0.73 2.5E-05 33.9 6.5 37 81-117 237-274 (950)
315 2xn4_A Kelch-like protein 2; s 91.0 1.8 6.1E-05 26.7 8.3 102 7-111 108-231 (302)
316 4gq2_M Nucleoporin NUP120; bet 90.9 0.66 2.3E-05 34.1 6.0 37 39-75 237-273 (950)
317 1bpo_A Protein (clathrin); cla 90.8 2.7 9.2E-05 28.5 10.7 73 37-109 258-331 (494)
318 3ii7_A Kelch-like protein 7; p 90.7 1.9 6.6E-05 26.6 8.3 101 7-111 55-180 (306)
319 4asc_A Kelch repeat and BTB do 90.7 2 6.7E-05 26.8 8.3 103 7-112 148-280 (315)
320 3a9g_A Putative uncharacterize 90.7 2.2 7.7E-05 27.4 8.6 71 38-110 29-115 (354)
321 1xi4_A Clathrin heavy chain; a 90.2 5.7 0.0002 31.2 10.3 99 17-115 178-295 (1630)
322 3sre_A PON1, serum paraoxonase 89.9 2.8 9.4E-05 27.2 12.7 90 17-109 138-252 (355)
323 1zgk_A Kelch-like ECH-associat 89.0 2.8 9.5E-05 26.0 7.9 101 7-111 121-242 (308)
324 1bpo_A Protein (clathrin); cla 88.7 4.1 0.00014 27.7 17.0 106 17-122 178-302 (494)
325 4fhn_B Nucleoporin NUP120; pro 88.6 0.69 2.4E-05 34.6 4.7 36 82-117 240-276 (1139)
326 2vpj_A Kelch-like protein 12; 88.6 2.9 0.0001 25.7 8.7 101 7-111 112-233 (301)
327 1cru_A Protein (soluble quinop 88.5 4.1 0.00014 27.3 13.7 91 3-93 33-157 (454)
328 3f7f_A Nucleoporin NUP120; nuc 88.2 1.9 6.4E-05 30.9 6.3 30 89-118 230-259 (729)
329 3sre_A PON1, serum paraoxonase 88.1 3.8 0.00013 26.6 9.3 69 38-107 221-296 (355)
330 4asc_A Kelch repeat and BTB do 88.0 3.4 0.00011 25.7 8.1 102 7-111 98-223 (315)
331 2ism_A Putative oxidoreductase 87.6 4 0.00014 26.1 10.8 69 38-109 31-114 (352)
332 2be1_A Serine/threonine-protei 87.5 4.1 0.00014 26.2 8.3 67 50-116 11-83 (339)
333 3s94_A LRP-6, low-density lipo 87.2 5.9 0.0002 27.7 15.7 105 4-108 47-158 (619)
334 4fhn_B Nucleoporin NUP120; pro 86.6 0.74 2.5E-05 34.5 3.8 35 41-75 241-275 (1139)
335 3s25_A Hypothetical 7-bladed b 86.3 4.5 0.00015 25.5 9.6 100 4-112 60-179 (302)
336 3f7f_A Nucleoporin NUP120; nuc 85.6 2.6 8.8E-05 30.2 5.8 35 40-76 224-258 (729)
337 2woz_A Kelch repeat and BTB do 85.6 4.8 0.00016 25.1 7.7 104 7-113 158-291 (318)
338 1zgk_A Kelch-like ECH-associat 85.6 4.7 0.00016 25.0 10.1 102 7-112 168-290 (308)
339 3ott_A Two-component system se 85.5 7.9 0.00027 27.5 11.9 70 39-110 192-261 (758)
340 3ii7_A Kelch-like protein 7; p 85.0 5 0.00017 24.8 9.2 100 8-111 12-129 (306)
341 2woz_A Kelch repeat and BTB do 84.9 5.2 0.00018 24.9 8.2 102 7-111 109-233 (318)
342 2wg3_C Hedgehog-interacting pr 84.2 7.5 0.00026 26.2 12.9 91 3-93 20-152 (463)
343 2g8s_A Glucose/sorbosone dehyd 84.1 6.4 0.00022 25.2 8.6 52 38-90 18-76 (353)
344 3ei3_A DNA damage-binding prot 84.0 12 0.00042 28.4 11.7 98 9-107 524-634 (1158)
345 1cru_A Protein (soluble quinop 82.7 8.6 0.0003 25.7 9.8 53 38-90 27-87 (454)
346 3s25_A Hypothetical 7-bladed b 79.8 9 0.00031 24.1 8.3 64 4-71 111-179 (302)
347 3zwu_A Alkaline phosphatase PH 77.9 15 0.00053 25.7 8.3 56 40-95 478-547 (592)
348 2zwa_A Leucine carboxyl methyl 77.1 17 0.00059 25.8 10.3 105 7-112 500-638 (695)
349 2zwa_A Leucine carboxyl methyl 76.0 18 0.00063 25.6 9.5 104 7-111 397-524 (695)
350 3das_A Putative oxidoreductase 74.8 14 0.00049 23.8 10.8 73 37-109 31-116 (347)
351 3ei3_A DNA damage-binding prot 74.3 27 0.00092 26.7 10.9 97 10-108 897-998 (1158)
352 3das_A Putative oxidoreductase 73.0 16 0.00055 23.6 14.9 93 3-95 38-156 (347)
353 1xi4_A Clathrin heavy chain; a 71.8 28 0.00097 27.7 7.8 71 38-108 259-330 (1630)
354 4a9v_A PHOX; hydrolase, beta-p 69.1 27 0.00093 24.6 8.2 54 39-92 477-543 (592)
355 2wg3_C Hedgehog-interacting pr 66.0 28 0.00094 23.5 6.6 53 38-90 14-79 (463)
356 3qhy_B Beta-lactamase inhibito 63.8 23 0.0008 21.9 9.1 49 58-108 158-206 (282)
357 1q47_A Semaphorin 3A; beta pro 59.1 40 0.0014 23.1 6.7 55 9-63 422-487 (495)
358 3qhy_B Beta-lactamase inhibito 58.0 31 0.001 21.4 10.0 86 17-108 41-128 (282)
359 3zwu_A Alkaline phosphatase PH 53.9 55 0.0019 23.1 7.4 54 3-56 482-549 (592)
360 2uvk_A YJHT; unknown function, 51.5 43 0.0015 21.1 8.6 48 59-107 168-224 (357)
361 4gz8_A Semaphorin-3A; multi-do 48.4 72 0.0025 22.9 6.2 55 9-63 430-495 (667)
362 1uhe_A Aspartate 1-decarboxyla 44.8 13 0.00045 19.2 1.7 18 100-117 17-34 (97)
363 1ukf_A Avirulence protein AVRP 44.4 37 0.0013 20.0 3.6 31 81-111 120-152 (188)
364 3al9_A Plexin-A2; beta-propell 39.3 46 0.0016 23.1 4.1 56 8-63 413-476 (539)
365 3mez_B Mannose-specific lectin 38.5 43 0.0015 17.5 7.6 25 84-109 60-84 (113)
366 3uc1_A DNA gyrase subunit A; D 37.8 79 0.0027 20.2 12.3 99 7-107 108-226 (327)
367 3q6k_A 43.2 kDa salivary prote 37.1 89 0.003 20.6 7.7 78 39-116 88-197 (381)
368 3mez_A Mannose-specific lectin 36.4 47 0.0016 17.3 4.9 13 41-53 22-34 (111)
369 1vc3_B L-aspartate-alpha-decar 36.2 42 0.0014 17.4 2.7 18 100-117 18-35 (96)
370 3oug_A Aspartate 1-decarboxyla 35.8 24 0.00081 18.9 1.8 19 99-117 44-62 (114)
371 3nvq_A Semaphorin-7A; beta-pro 35.6 1.2E+02 0.004 21.5 6.8 55 9-63 381-444 (590)
372 3plx_B Aspartate 1-decarboxyla 34.8 45 0.0015 17.5 2.7 18 100-117 18-35 (102)
373 1suu_A DNA gyrase subunit A; t 32.9 94 0.0032 19.6 11.8 100 7-107 113-229 (312)
374 1pqh_A Aspartate 1-decarboxyla 32.6 30 0.001 19.3 2.0 19 99-117 58-76 (143)
375 3c12_A FLGD, flagellar protein 29.5 73 0.0025 17.3 4.5 27 20-46 43-71 (138)
376 2oqj_C Peptide 2G12.1 (ACPPSHV 28.0 30 0.001 12.5 1.2 13 103-115 6-18 (26)
377 1olz_A Semaphorin 4D; developm 24.3 2E+02 0.0069 20.7 7.0 55 9-63 416-477 (663)
378 2c45_A Aspartate 1-decarboxyla 23.9 32 0.0011 19.1 1.1 19 99-117 41-59 (139)
379 2wl1_A Pyrin, marenostrin; amy 22.6 1.2E+02 0.0042 17.6 4.7 36 93-128 135-172 (191)
380 3d8d_A Amyloid beta A4 precurs 21.2 1.2E+02 0.0042 17.1 4.8 36 49-84 54-89 (148)
381 3oky_B Putative uncharacterize 21.0 2.3E+02 0.0077 20.0 5.9 28 37-64 469-496 (565)
382 1xks_A Nuclear pore complex pr 20.1 2.1E+02 0.0073 19.4 14.0 56 11-67 111-171 (450)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.96 E-value=8.3e-28 Score=152.32 Aligned_cols=123 Identities=25% Similarity=0.394 Sum_probs=114.8
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP 81 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (131)
+|+|++++|++|+.|+.|++||+. ++.+..+.+|..+|.+++|+|+++++++++.|+.|++||+++++....+.+|...
T Consensus 171 ~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~ 250 (321)
T 3ow8_A 171 AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASW 250 (321)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSC
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCc
Confidence 478999999999999999999987 7778888999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840 82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL 125 (131)
Q Consensus 82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 125 (131)
|.+++|+|++. +++++.|+.|++||+++++++.++.+|...+..
T Consensus 251 v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~ 295 (321)
T 3ow8_A 251 VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWG 295 (321)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEE
Confidence 99999999977 899999999999999999999999988877654
No 2
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.96 E-value=3e-27 Score=148.63 Aligned_cols=124 Identities=17% Similarity=0.274 Sum_probs=112.7
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP 81 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (131)
+|+|+++++++|+.||+|++||+. +..+..+..|..++.+++|+|+++++++++.|+.|++||+.+++.+..+..|...
T Consensus 20 ~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~ 99 (304)
T 2ynn_A 20 DFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY 99 (304)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCc
Confidence 589999999999999999999987 6777888899999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCc-EEEEeCCCcEEEEeCCCC-eeeEEEecccceEEEE
Q psy3840 82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSD-KPVKSFEGHTRVYYLA 126 (131)
Q Consensus 82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~ 126 (131)
|.+++|+|++. +++++.|+.|++||++++ .....+.+|...+..+
T Consensus 100 v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v 146 (304)
T 2ynn_A 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146 (304)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEE
T ss_pred EEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEE
Confidence 99999999976 899999999999999887 5556778887766543
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.96 E-value=4.6e-27 Score=153.11 Aligned_cols=124 Identities=22% Similarity=0.369 Sum_probs=115.2
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP 81 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (131)
.|+|++.++++|+.|++|++||+. ++....+.+|.+.|.+++|+|+++++++++.|++|++||+.+++++..+.+|...
T Consensus 115 ~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~ 194 (410)
T 1vyh_C 115 IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN 194 (410)
T ss_dssp EECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCC
Confidence 478999999999999999999987 7778889999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840 82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA 126 (131)
Q Consensus 82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 126 (131)
|.+++|+|++. +++++.|+.|++||++++.++..+.+|...+..+
T Consensus 195 V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~ 240 (410)
T 1vyh_C 195 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240 (410)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEE
Confidence 99999999976 8999999999999999999999999988766543
No 4
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.95 E-value=1.2e-25 Score=141.37 Aligned_cols=123 Identities=28% Similarity=0.476 Sum_probs=113.8
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP 81 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (131)
+|+|+++++++|+.|+.|++|+.. ++....+.+|...|.+++|+|+++++++++.|+.+++||+++++.+..+..|...
T Consensus 30 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 109 (312)
T 4ery_A 30 KFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 109 (312)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred EECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCC
Confidence 478999999999999999999986 7777888899999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840 82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL 125 (131)
Q Consensus 82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 125 (131)
+.++.|+|++. +++++.|+.|++||+++++++..+..|...+..
T Consensus 110 v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 154 (312)
T 4ery_A 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 154 (312)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEE
Confidence 99999999976 899999999999999999999999888776544
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.95 E-value=7.4e-26 Score=143.38 Aligned_cols=123 Identities=20% Similarity=0.367 Sum_probs=113.7
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP 81 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (131)
+|+|+++++++|+.++.|++|++. ++....+..|...+.+++|+|+++++++++.|+.+++||+++++.+..+..|..+
T Consensus 129 ~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~ 208 (321)
T 3ow8_A 129 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP 208 (321)
T ss_dssp EECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred EECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCc
Confidence 479999999999999999999987 6677778888899999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840 82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL 125 (131)
Q Consensus 82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 125 (131)
+.+++|+|++. +++++.|+.|++||+++++.+..+.+|...+..
T Consensus 209 v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 253 (321)
T 3ow8_A 209 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLN 253 (321)
T ss_dssp CCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEE
Confidence 99999999987 899999999999999999999999998876644
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.95 E-value=1e-25 Score=146.82 Aligned_cols=124 Identities=25% Similarity=0.339 Sum_probs=114.7
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP 81 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (131)
+|+|++++|++|+.|++|++||+. ++.+..+.+|...|.+++|+|++..+++++.|+++++||++++.++..+.+|...
T Consensus 157 ~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~ 236 (410)
T 1vyh_C 157 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW 236 (410)
T ss_dssp EECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCcc
Confidence 478999999999999999999987 6777888999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840 82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA 126 (131)
Q Consensus 82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 126 (131)
+.++.++|++. +++++.|+.|++||++++++...+..|...+..+
T Consensus 237 v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~ 282 (410)
T 1vyh_C 237 VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 282 (410)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEE
Confidence 99999999987 8999999999999999999999998888766543
No 7
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.94 E-value=1.7e-25 Score=143.07 Aligned_cols=124 Identities=16% Similarity=0.239 Sum_probs=106.8
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCcceeeeee--cC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQCEQQFS--FH 78 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~~~s~~~d~~i~~~d~~~~~~~~~~~--~~ 78 (131)
+|+|++++|++|+.|++|++||+. ++.+..+.+|.+.|.+++|+|++ ..+++++.|++|++||+++++....+. .+
T Consensus 134 ~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 213 (344)
T 4gqb_B 134 SVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAP 213 (344)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeeccee
Confidence 479999999999999999999987 77888899999999999999977 578999999999999999998877764 34
Q ss_pred CCCeEEEEEcCC-Cc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840 79 SAPALDVDWQSN-TS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA 126 (131)
Q Consensus 79 ~~~v~~~~~~~~-~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 126 (131)
...+.+++|+|+ +. +++++.|+.|++||+++++++.++.+|...+..+
T Consensus 214 ~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v 263 (344)
T 4gqb_B 214 GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL 263 (344)
T ss_dssp CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEE
T ss_pred eccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 457899999996 44 7889999999999999999999999998877554
No 8
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.6e-25 Score=142.20 Aligned_cols=123 Identities=26% Similarity=0.507 Sum_probs=102.6
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC--------CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc----c
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD--------GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG----Q 70 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~----~ 70 (131)
+|+|++++|++|+.|++|++|+.. .+.+..+.+|.+.|.+++|+|+++++++++.|+++++||++.. +
T Consensus 65 ~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~ 144 (330)
T 2hes_X 65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYE 144 (330)
T ss_dssp EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCE
T ss_pred EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeE
Confidence 478999999999999999999974 2345677899999999999999999999999999999999532 4
Q ss_pred eeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC--eeeEEEecccceEEE
Q psy3840 71 CEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSD--KPVKSFEGHTRVYYL 125 (131)
Q Consensus 71 ~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~ 125 (131)
.+..+..|...|.+++|+|++. +++++.|+.|++||.+++ +++..+.+|...+..
T Consensus 145 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~ 202 (330)
T 2hes_X 145 CISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWS 202 (330)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEE
T ss_pred EEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEE
Confidence 5667788999999999999976 899999999999999876 678888888876644
No 9
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.94 E-value=3.6e-25 Score=141.01 Aligned_cols=124 Identities=18% Similarity=0.243 Sum_probs=110.8
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC--C
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH--S 79 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~--~ 79 (131)
+|+|+++++++|+.|+.|++||+. +.....+.+|...|.+++|+|+++++++++.|+.+++||+++++.+..+... .
T Consensus 191 ~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~ 270 (340)
T 1got_B 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII 270 (340)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcc
Confidence 478999999999999999999987 7778888999999999999999999999999999999999998877666532 3
Q ss_pred CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840 80 APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA 126 (131)
Q Consensus 80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 126 (131)
..+.+++|+|++. +++++.|+.|++||+++++.+..+.+|...+..+
T Consensus 271 ~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 318 (340)
T 1got_B 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred cceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEE
Confidence 4799999999987 8999999999999999999999999998877543
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.94 E-value=1.2e-24 Score=137.57 Aligned_cols=125 Identities=24% Similarity=0.332 Sum_probs=112.5
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCC------CCEEEEEeCCCcEEEEECCCcceeeeee
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKR------GNYILSAGVDKTTIIWDAASGQCEQQFS 76 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~s~~~d~~i~~~d~~~~~~~~~~~ 76 (131)
+|+|++.++++|+.|++|++||+.+..+..+.+|...+.++.++|. +..+++++.|+.+++||+++.+....+.
T Consensus 114 ~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 193 (319)
T 3frx_A 114 DIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI 193 (319)
T ss_dssp EECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec
Confidence 4789999999999999999999998888899999999999999984 4489999999999999999999888899
Q ss_pred cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEEe
Q psy3840 77 FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLAM 127 (131)
Q Consensus 77 ~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 127 (131)
+|...+.+++|+|++. +++++.|+.|++||+++++++..+..+......++
T Consensus 194 ~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~ 245 (319)
T 3frx_A 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAF 245 (319)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEE
Confidence 9999999999999987 89999999999999999999998887665444443
No 11
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.94 E-value=4.5e-25 Score=140.86 Aligned_cols=123 Identities=26% Similarity=0.487 Sum_probs=104.5
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCCc----eeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc--ceeeeee
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGSL----KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG--QCEQQFS 76 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~--~~~~~~~ 76 (131)
+|+|++++|++|+.|++|++||+.+.. .....+|...|.+++|+|+++++++++.|+.+++||+..+ +.+..+.
T Consensus 23 ~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 102 (345)
T 3fm0_A 23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE 102 (345)
T ss_dssp EECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC
T ss_pred EECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc
Confidence 589999999999999999999987432 1233679999999999999999999999999999998876 4567788
Q ss_pred cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC---eeeEEEecccceEEE
Q psy3840 77 FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSD---KPVKSFEGHTRVYYL 125 (131)
Q Consensus 77 ~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~ 125 (131)
+|...|.+++|+|++. +++++.|+.|++||++++ +++..+..|...+..
T Consensus 103 ~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~ 155 (345)
T 3fm0_A 103 GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKH 155 (345)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEE
T ss_pred CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEE
Confidence 8999999999999987 899999999999999876 345666777766543
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.94 E-value=2.9e-25 Score=141.92 Aligned_cols=114 Identities=19% Similarity=0.254 Sum_probs=100.2
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCcee----ecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKS----TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF 77 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~----~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~ 77 (131)
+|+++ +.+++|+.||+|++||+. ++... ...+|.+.|.+++|+|+++++++++.|++|++||+++++.+..+.+
T Consensus 89 ~~s~d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~ 167 (344)
T 4gqb_B 89 TWVGE-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRA 167 (344)
T ss_dssp EEETT-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEeCC-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 36776 578899999999999987 44332 3457999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840 78 HSAPALDVDWQSNTS--FASCSTDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 78 ~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~~~~ 117 (131)
|...|.+++|+|++. +++++.|+.|++||+++++++..+.
T Consensus 168 h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 209 (344)
T 4gqb_B 168 HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG 209 (344)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC
T ss_pred cCCceEEEEecCCCCCceeeeccccccccccccccceeeeee
Confidence 999999999999864 7899999999999999998877764
No 13
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.94 E-value=5.1e-25 Score=138.46 Aligned_cols=115 Identities=23% Similarity=0.303 Sum_probs=102.2
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc-ceeeeeecCCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQQFSFHSA 80 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~-~~~~~~~~~~~ 80 (131)
.|+|++++|++|+.|++|++||+. ++.+..+.+|.+.|.+++|+|+++++++++.|+++++||++++ .....+.+|..
T Consensus 62 ~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~ 141 (304)
T 2ynn_A 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH 141 (304)
T ss_dssp EEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCS
T ss_pred EEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCC
Confidence 478899999999999999999987 7888889999999999999999999999999999999999887 44566778999
Q ss_pred CeEEEEEcCC-Cc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840 81 PALDVDWQSN-TS-FASCSTDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 81 ~v~~~~~~~~-~~-~~~~~~d~~i~i~d~~~~~~~~~~~ 117 (131)
.|.+++|+|+ +. +++++.|+.|++||++++.+...+.
T Consensus 142 ~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~ 180 (304)
T 2ynn_A 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180 (304)
T ss_dssp CEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE
T ss_pred cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec
Confidence 9999999994 55 8999999999999998876655554
No 14
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.94 E-value=3.1e-25 Score=144.05 Aligned_cols=117 Identities=18% Similarity=0.261 Sum_probs=108.2
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP 81 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (131)
++++++++|++|+.|+.|++||+. ++....+.+|.+.|.+++|+|+++++++++.|+.+++||+++++.+..+..|...
T Consensus 104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~ 183 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT 183 (420)
T ss_dssp EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSC
T ss_pred EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCc
Confidence 578999999999999999999987 5556666799999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840 82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH 119 (131)
Q Consensus 82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~ 119 (131)
|.+++|+|++. +++++.|+.|++||+++++.+..+..|
T Consensus 184 v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 222 (420)
T 3vl1_A 184 VTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRK 222 (420)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBT
T ss_pred EEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecC
Confidence 99999999977 899999999999999999999988754
No 15
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.94 E-value=5.9e-25 Score=139.02 Aligned_cols=122 Identities=25% Similarity=0.352 Sum_probs=107.3
Q ss_pred cccCC-CCEEEEEeCCCeEEEEcCC------CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeee
Q psy3840 3 SSRNN-GSFLATGSYDGYARIWTSD------GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 75 (131)
Q Consensus 3 ~~~~~-~~~l~~~~~d~~i~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~ 75 (131)
+|+|+ +++|++|+.|++|++|++. +.++..+.+|...|.+++|+|+++++++++.|++|++||+++++.+..+
T Consensus 24 ~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~ 103 (319)
T 3frx_A 24 ATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF 103 (319)
T ss_dssp EECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEE
Confidence 35664 4899999999999999975 2346678899999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840 76 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL 125 (131)
Q Consensus 76 ~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 125 (131)
.+|...|.+++|+|++. +++++.|+.|++||++ ++++..+.+|...+..
T Consensus 104 ~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~ 153 (319)
T 3frx_A 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQ 153 (319)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEE
T ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEE
Confidence 99999999999999976 8999999999999997 5677777777765543
No 16
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.94 E-value=3.4e-24 Score=134.76 Aligned_cols=115 Identities=26% Similarity=0.455 Sum_probs=106.9
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP 81 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (131)
+|+|++++|++|+.|+.|++||+. ++.+..+.+|...+.+++|+|+++++++++.|+.+++||+++++.+..+..|..+
T Consensus 72 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 151 (312)
T 4ery_A 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151 (312)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred EEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCc
Confidence 478999999999999999999987 7778888999999999999999999999999999999999999999999989999
Q ss_pred eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840 82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~ 117 (131)
+.+++|+|++. +++++.|+.|++||+++++.+..+.
T Consensus 152 v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 188 (312)
T 4ery_A 152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 188 (312)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEe
Confidence 99999999977 8999999999999999998877764
No 17
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.93 E-value=2.5e-24 Score=144.56 Aligned_cols=122 Identities=24% Similarity=0.411 Sum_probs=112.6
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA 82 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v 82 (131)
+|+|+++++++++.|+.|++||..++.+..+.+|...+.+++|+|+++++++++.|+.|++||. +++.+..+..|...|
T Consensus 433 ~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v 511 (577)
T 2ymu_A 433 AFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 511 (577)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCE
T ss_pred EECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCE
Confidence 4789999999999999999999988888999999999999999999999999999999999994 678888999999999
Q ss_pred EEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840 83 LDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA 126 (131)
Q Consensus 83 ~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 126 (131)
.+++|+|+++ |++++.|+.|++||. +++++..+.+|...+..+
T Consensus 512 ~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~ 555 (577)
T 2ymu_A 512 RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGV 555 (577)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEE
T ss_pred EEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEE
Confidence 9999999987 899999999999995 688999999998877543
No 18
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.93 E-value=3.4e-24 Score=136.56 Aligned_cols=124 Identities=16% Similarity=0.280 Sum_probs=111.2
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc----eeeeeec
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ----CEQQFSF 77 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~----~~~~~~~ 77 (131)
.|+|++++|++|+.|++|++||.. ++.+..+..|...+.+++|+|+++++++++.|+.+++|++.+.+ ....+.+
T Consensus 62 ~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~ 141 (340)
T 1got_B 62 HWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141 (340)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEEC
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecC
Confidence 478999999999999999999986 77778888899999999999999999999999999999998753 4456778
Q ss_pred CCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840 78 HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA 126 (131)
Q Consensus 78 ~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 126 (131)
|...+.++.|++++.+++++.|+.|++||+++++++..+.+|...+..+
T Consensus 142 h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~ 190 (340)
T 1got_B 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL 190 (340)
T ss_dssp CSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEE
Confidence 8899999999999899999999999999999999999999888766543
No 19
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.93 E-value=2.2e-24 Score=137.68 Aligned_cols=123 Identities=23% Similarity=0.492 Sum_probs=106.7
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCC---CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc---eeeeee
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDG---SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ---CEQQFS 76 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~---~~~~~~ 76 (131)
+|+|++++|++|+.|+++++|+... +.+..+.+|.+.|.+++|+|+++++++++.|+.+++||++++. .+..+.
T Consensus 68 ~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 147 (345)
T 3fm0_A 68 AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN 147 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC
T ss_pred EECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec
Confidence 4799999999999999999999763 3467788999999999999999999999999999999998753 355677
Q ss_pred cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCe--eeEEEecccceEEE
Q psy3840 77 FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDK--PVKSFEGHTRVYYL 125 (131)
Q Consensus 77 ~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~ 125 (131)
.|...+.+++|+|++. +++++.|+.|++||+++++ +...+.+|...+..
T Consensus 148 ~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~ 199 (345)
T 3fm0_A 148 SHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS 199 (345)
T ss_dssp CCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEE
T ss_pred CcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEE
Confidence 7888999999999977 9999999999999998875 45677888776644
No 20
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.93 E-value=5e-24 Score=136.55 Aligned_cols=117 Identities=30% Similarity=0.516 Sum_probs=106.5
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNK--RGNYILSAGVDKTTIIWDAASGQCEQQFSFHS 79 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~--~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (131)
+|+|++..|++++.|++|++||+. ++.+..+.+|...+.+++++| +++.+++++.|+.+++||+++++++..+..|.
T Consensus 161 ~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~ 240 (354)
T 2pbi_B 161 SFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE 240 (354)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred EEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 478899999999999999999987 778888999999999999988 56899999999999999999999999999999
Q ss_pred CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840 80 APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH 119 (131)
Q Consensus 80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~ 119 (131)
..|.+++|+|++. +++++.|+.|++||+++++.+..+..+
T Consensus 241 ~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~ 281 (354)
T 2pbi_B 241 SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE 281 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 9999999999976 899999999999999998877766543
No 21
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.93 E-value=4.4e-24 Score=133.83 Aligned_cols=122 Identities=23% Similarity=0.401 Sum_probs=103.0
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC---CCceeecccccccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCcc--eeeee
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD---GSLKSTLGQHKGPIFALKWNK--RGNYILSAGVDKTTIIWDAASGQ--CEQQF 75 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~---~~~~~~~~~~~~~i~~~~~~~--~~~~~~s~~~d~~i~~~d~~~~~--~~~~~ 75 (131)
+|+|++++|++|+.|++|++|++. .+.+..+.+|.++|.+++|+| +++++++++.|+++++||+++++ .+..+
T Consensus 16 ~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~ 95 (297)
T 2pm7_B 16 VMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH 95 (297)
T ss_dssp EECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE
T ss_pred EECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe
Confidence 488999999999999999999986 356778899999999999986 48999999999999999998874 45667
Q ss_pred ecCCCCeEEEEEcCC--Cc-EEEEeCCCcEEEEeCCCCe--eeEEEecccceEE
Q psy3840 76 SFHSAPALDVDWQSN--TS-FASCSTDQHIHVCKLHSDK--PVKSFEGHTRVYY 124 (131)
Q Consensus 76 ~~~~~~v~~~~~~~~--~~-~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~ 124 (131)
..|...|.+++|+|+ +. +++++.|+.|++||++++. ....+.+|...+.
T Consensus 96 ~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~ 149 (297)
T 2pm7_B 96 AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN 149 (297)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEE
T ss_pred ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccc
Confidence 778889999999996 55 8999999999999998763 2345566765543
No 22
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.93 E-value=5.2e-24 Score=135.77 Aligned_cols=105 Identities=20% Similarity=0.358 Sum_probs=95.8
Q ss_pred CCCCEEEEEeCCCeEEEEcCCC--------CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec
Q psy3840 6 NNGSFLATGSYDGYARIWTSDG--------SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF 77 (131)
Q Consensus 6 ~~~~~l~~~~~d~~i~~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~ 77 (131)
+++++|++|+.|++|++||+.. .+...+.+|...|.+++|+|++.++++++.|+++++||+++++.+..+.+
T Consensus 37 ~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~ 116 (343)
T 2xzm_R 37 EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVG 116 (343)
T ss_dssp CCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEEC
T ss_pred CCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 3899999999999999999752 34566789999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC
Q psy3840 78 HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSD 110 (131)
Q Consensus 78 ~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~ 110 (131)
|...|.+++|+|++. +++++.|+.|++||++..
T Consensus 117 h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~ 150 (343)
T 2xzm_R 117 HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150 (343)
T ss_dssp CCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC
T ss_pred CCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC
Confidence 999999999999987 899999999999999743
No 23
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.93 E-value=1.3e-23 Score=134.65 Aligned_cols=121 Identities=18% Similarity=0.255 Sum_probs=106.8
Q ss_pred CCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC--CCCe
Q psy3840 6 NNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH--SAPA 82 (131)
Q Consensus 6 ~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~--~~~v 82 (131)
++++.+++|+.|+.|++||+. ++.+..+.+|...|.+++|+|++..+++++.|+++++||++.++.+..+..+ ...+
T Consensus 208 ~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA 287 (354)
T ss_dssp SSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence 367899999999999999987 7778888999999999999999999999999999999999988776665533 3468
Q ss_pred EEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840 83 LDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA 126 (131)
Q Consensus 83 ~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 126 (131)
.+++|+|++. +++++.|+.|++||+++++.+..+.+|...+..+
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l 332 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTL 332 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEE
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEE
Confidence 8999999987 8899999999999999999999999998876543
No 24
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.93 E-value=2.3e-24 Score=146.40 Aligned_cols=116 Identities=23% Similarity=0.400 Sum_probs=104.8
Q ss_pred cccCCCC-EEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee----
Q psy3840 3 SSRNNGS-FLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS---- 76 (131)
Q Consensus 3 ~~~~~~~-~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~---- 76 (131)
+|+|++. .|++|+.|++|++||.. ++....+.+|.+.|.+++|+|+++++++++.|+++++||+.+++.+..+.
T Consensus 154 ~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~ 233 (611)
T 1nr0_A 154 DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL 233 (611)
T ss_dssp EECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS
T ss_pred EECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccc
Confidence 4788876 69999999999999976 66677889999999999999999999999999999999999998877774
Q ss_pred ---cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840 77 ---FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 77 ---~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~ 118 (131)
.|...|.+++|+|+++ +++++.|+.|++||+++++++.++..
T Consensus 234 ~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~ 279 (611)
T 1nr0_A 234 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV 279 (611)
T ss_dssp SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred cccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecC
Confidence 6888999999999987 89999999999999999988887754
No 25
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.93 E-value=1.2e-23 Score=136.38 Aligned_cols=113 Identities=27% Similarity=0.448 Sum_probs=102.0
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP 81 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (131)
+|+|++++|++|+.|+.|++||+. ++.+..+.+|...|.+++|+|++..+++++.|+++++||+++++....+. +...
T Consensus 130 ~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~ 208 (393)
T 1erj_A 130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDG 208 (393)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSC
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCC
Confidence 478999999999999999999987 66777889999999999999999999999999999999999998877766 4568
Q ss_pred eEEEEEcC-CCc-EEEEeCCCcEEEEeCCCCeeeEEE
Q psy3840 82 ALDVDWQS-NTS-FASCSTDQHIHVCKLHSDKPVKSF 116 (131)
Q Consensus 82 v~~~~~~~-~~~-~~~~~~d~~i~i~d~~~~~~~~~~ 116 (131)
+.+++++| ++. +++++.|+.|++||+++++.+..+
T Consensus 209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~ 245 (393)
T 1erj_A 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245 (393)
T ss_dssp EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEee
Confidence 99999999 666 899999999999999999877766
No 26
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.93 E-value=7.6e-24 Score=137.31 Aligned_cols=120 Identities=23% Similarity=0.434 Sum_probs=108.3
Q ss_pred cccC-CCCEEEEEeCCCeEEEEcCC-C-------CceeecccccccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCccee
Q psy3840 3 SSRN-NGSFLATGSYDGYARIWTSD-G-------SLKSTLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQCE 72 (131)
Q Consensus 3 ~~~~-~~~~l~~~~~d~~i~~~~~~-~-------~~~~~~~~~~~~i~~~~~~~~~-~~~~s~~~d~~i~~~d~~~~~~~ 72 (131)
+|+| ++++|++|+.|+.|++|++. + +.+..+.+|...|.+++|+|++ ..+++++.|+.+++||+++++.+
T Consensus 88 ~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 167 (402)
T 2aq5_A 88 AWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV 167 (402)
T ss_dssp EECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE
T ss_pred EeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc
Confidence 4788 89999999999999999987 3 5677888999999999999997 69999999999999999999998
Q ss_pred eee--ecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEE-ecccce
Q psy3840 73 QQF--SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSF-EGHTRV 122 (131)
Q Consensus 73 ~~~--~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~ 122 (131)
..+ ..|...+.+++|+|++. +++++.|+.|++||+++++.+..+ ..|...
T Consensus 168 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 221 (402)
T 2aq5_A 168 LTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT 221 (402)
T ss_dssp EEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSS
T ss_pred EEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCC
Confidence 888 77889999999999976 999999999999999999999888 667653
No 27
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4e-24 Score=135.77 Aligned_cols=108 Identities=26% Similarity=0.417 Sum_probs=96.1
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-C----CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc--ceeeee
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-G----SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG--QCEQQF 75 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~----~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~--~~~~~~ 75 (131)
+|+|++++|++|+.|++|++||+. . +.+..+.+|...|.+++|+|++.++++++.|+++++||..++ +++..+
T Consensus 114 ~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~ 193 (330)
T 2hes_X 114 AWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL 193 (330)
T ss_dssp EECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred EECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc
Confidence 479999999999999999999984 2 345677889999999999999999999999999999998765 577888
Q ss_pred ecCCCCeEEEEEcCC--Cc-EEEEeCCCcEEEEeCCCC
Q psy3840 76 SFHSAPALDVDWQSN--TS-FASCSTDQHIHVCKLHSD 110 (131)
Q Consensus 76 ~~~~~~v~~~~~~~~--~~-~~~~~~d~~i~i~d~~~~ 110 (131)
.+|...|.+++|+|+ +. +++++.|+.|++||++++
T Consensus 194 ~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 194 NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 899999999999998 54 899999999999998754
No 28
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.93 E-value=1.1e-23 Score=141.38 Aligned_cols=119 Identities=25% Similarity=0.459 Sum_probs=104.9
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA 82 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v 82 (131)
+|+|||++|++|+.|+.|++||..++.+.++.+|.+.|.+++|+|+++++++++.|++|++||. +++.+..+..|...|
T Consensus 23 a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~~~~~v 101 (577)
T 2ymu_A 23 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 101 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCE
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEECCCCCE
Confidence 5899999999999999999999889999999999999999999999999999999999999995 677888899999999
Q ss_pred EEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceE
Q psy3840 83 LDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVY 123 (131)
Q Consensus 83 ~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 123 (131)
.+++|+|++. +++++.|+.+++|+.... .......+...+
T Consensus 102 ~~~~~s~d~~~l~~~~~d~~~~~~~~~~~-~~~~~~~~~~~v 142 (577)
T 2ymu_A 102 RGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSV 142 (577)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTCC-EEEEECCCSSCE
T ss_pred EEEEECCCCCEEEEEcCCCceeecccccc-eeeeccCCCCce
Confidence 9999999987 899999999999997644 334444444433
No 29
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.92 E-value=4.1e-24 Score=137.98 Aligned_cols=120 Identities=18% Similarity=0.214 Sum_probs=103.7
Q ss_pred cCCCCEEEEEeCCCeEEEEcCC--CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC---
Q psy3840 5 RNNGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS--- 79 (131)
Q Consensus 5 ~~~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~--- 79 (131)
+++++++++|+.|++|++||+. +..+..+.+|.+.|.+++|+|+++++++++.|+++++||+++++.+..+..+.
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 294 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN 294 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence 3478999999999999999986 56778889999999999999999999999999999999999998877765432
Q ss_pred ----CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEE----ecccceEE
Q psy3840 80 ----APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSF----EGHTRVYY 124 (131)
Q Consensus 80 ----~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~~ 124 (131)
..+.+++|+|++. +++++.|+.|++||+.+++.+..+ .+|...+.
T Consensus 295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~ 348 (380)
T 3iz6_a 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRIS 348 (380)
T ss_dssp CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCC
T ss_pred ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceE
Confidence 2488999999987 889999999999999999888776 56766554
No 30
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.92 E-value=1.9e-23 Score=135.37 Aligned_cols=123 Identities=24% Similarity=0.486 Sum_probs=104.6
Q ss_pred ccC-CCCEEEEEeCCCeEEEEcCC-CCceeec-------ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc-----
Q psy3840 4 SRN-NGSFLATGSYDGYARIWTSD-GSLKSTL-------GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG----- 69 (131)
Q Consensus 4 ~~~-~~~~l~~~~~d~~i~~~~~~-~~~~~~~-------~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~----- 69 (131)
++| +++++++|+.|+.|++||+. +..+..+ .+|...|.+++|+|+++++++++.|+.+++||+++.
T Consensus 214 ~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~ 293 (393)
T 1erj_A 214 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 293 (393)
T ss_dssp ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccc
Confidence 566 89999999999999999987 4444444 578899999999999999999999999999999753
Q ss_pred -------ceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840 70 -------QCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA 126 (131)
Q Consensus 70 -------~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 126 (131)
.+...+.+|...+.+++|+|++. +++++.|+.|++||+++++++..+.+|...+..+
T Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v 358 (393)
T 1erj_A 294 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358 (393)
T ss_dssp -------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred ccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEE
Confidence 33456677888999999999976 8999999999999999999999999998876544
No 31
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.92 E-value=1.5e-23 Score=142.42 Aligned_cols=122 Identities=23% Similarity=0.395 Sum_probs=102.9
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecc-------cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeee
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLG-------QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ 74 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~-------~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~ 74 (131)
+|+|++++|++|+.|++|++||.. ++....+. +|.+.|.+++|+|+++++++++.|+++++||+++++.+..
T Consensus 197 ~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~ 276 (611)
T 1nr0_A 197 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT 276 (611)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeee
Confidence 489999999999999999999976 66666653 7999999999999999999999999999999987654432
Q ss_pred -------------------------------------------eecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC
Q psy3840 75 -------------------------------------------FSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSD 110 (131)
Q Consensus 75 -------------------------------------------~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~ 110 (131)
+.+|...|.+++|+|+++ +++++.|+.|++||++++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 277 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp EECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred ecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence 345778899999999987 899999999999999998
Q ss_pred eeeEEE-ecccceEE
Q psy3840 111 KPVKSF-EGHTRVYY 124 (131)
Q Consensus 111 ~~~~~~-~~~~~~~~ 124 (131)
+....+ .+|...+.
T Consensus 357 ~~~~~~~~~h~~~v~ 371 (611)
T 1nr0_A 357 ISNRVFPDVHATMIT 371 (611)
T ss_dssp CEEECSSCSCSSCEE
T ss_pred ceeeecccCCcceEE
Confidence 776654 45555443
No 32
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.92 E-value=3.4e-24 Score=137.90 Aligned_cols=107 Identities=16% Similarity=0.159 Sum_probs=93.9
Q ss_pred cccCCCCEEEEEeCCC----eEEEEcCCCC-----ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceee
Q psy3840 3 SSRNNGSFLATGSYDG----YARIWTSDGS-----LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ 73 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~----~i~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~ 73 (131)
+|+|+++.+++++.|+ .++.|++... ....+.+|...|.+++|+|+++++++|+.|++|++||+++++++.
T Consensus 226 ~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~ 305 (365)
T 4h5i_A 226 NFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSK 305 (365)
T ss_dssp EEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEE
Confidence 4789999999998877 5788887522 234567788999999999999999999999999999999999888
Q ss_pred ee-ecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCC
Q psy3840 74 QF-SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHS 109 (131)
Q Consensus 74 ~~-~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~ 109 (131)
.+ .+|...|++++|+|+++ |++++.|++|+|||+..
T Consensus 306 ~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 306 IFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 75 67999999999999987 89999999999999964
No 33
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.91 E-value=3.1e-23 Score=133.04 Aligned_cols=124 Identities=14% Similarity=0.267 Sum_probs=108.1
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCcceeeeee--cC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQCEQQFS--FH 78 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~~~s~~~d~~i~~~d~~~~~~~~~~~--~~ 78 (131)
+|+|++++|++|+.|+.|++||+. ++.+..+.+|...|.+++|+|++ ..+++++.|+.|++||+++++....+. .+
T Consensus 146 ~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~ 225 (357)
T 4g56_B 146 SVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCAS 225 (357)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTC
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccc
Confidence 478999999999999999999987 77788889999999999999976 478999999999999999988766554 35
Q ss_pred CCCeEEEEEcCCC-c-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840 79 SAPALDVDWQSNT-S-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA 126 (131)
Q Consensus 79 ~~~v~~~~~~~~~-~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 126 (131)
...+.+++|+|++ . +++++.|+.|++||+++++++..+.+|...+..+
T Consensus 226 ~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l 275 (357)
T 4g56_B 226 DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL 275 (357)
T ss_dssp CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE
T ss_pred cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEE
Confidence 5679999999974 4 7889999999999999999999999888776543
No 34
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.91 E-value=1.7e-22 Score=128.76 Aligned_cols=121 Identities=19% Similarity=0.303 Sum_probs=102.7
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee---cC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS---FH 78 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~---~~ 78 (131)
+|+|++.++++|+.|++|++||+. ++.+..+.+|...|.+++|+|+++++++++.|+.+++||+.... ..... .|
T Consensus 83 ~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~ 161 (343)
T 2xzm_R 83 ALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENH 161 (343)
T ss_dssp EECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSC
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCC
Confidence 478999999999999999999987 77788889999999999999999999999999999999997433 22222 56
Q ss_pred CCCeEEEEEcCCC----------c-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840 79 SAPALDVDWQSNT----------S-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL 125 (131)
Q Consensus 79 ~~~v~~~~~~~~~----------~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 125 (131)
...+.+++|+|++ . +++++.|+.|++|| .+.+....+.+|...+..
T Consensus 162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~ 218 (343)
T 2xzm_R 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNH 218 (343)
T ss_dssp SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEE
T ss_pred CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceE
Confidence 7789999999975 3 89999999999999 456777788888776644
No 35
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.91 E-value=3e-23 Score=133.09 Aligned_cols=123 Identities=18% Similarity=0.231 Sum_probs=95.3
Q ss_pred cccCCCCEEEEEeC------CCeEEEEcCC-CC----ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcce
Q psy3840 3 SSRNNGSFLATGSY------DGYARIWTSD-GS----LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC 71 (131)
Q Consensus 3 ~~~~~~~~l~~~~~------d~~i~~~~~~-~~----~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~ 71 (131)
+|+|||++|++|+. |+.|++|+.. +. .......|...|.+++|+|++. +++++.|++|++||+.+++.
T Consensus 49 ~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~ 127 (357)
T 4g56_B 49 RYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKES 127 (357)
T ss_dssp EECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC-------
T ss_pred EECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccce
Confidence 58999999999997 6789999875 32 2233456888999999999875 55678899999999988765
Q ss_pred ee----eeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840 72 EQ----QFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA 126 (131)
Q Consensus 72 ~~----~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 126 (131)
.. ...+|...|.+++|+|+++ +++++.|+.|++||+++++++..+.+|...+..+
T Consensus 128 ~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v 187 (357)
T 4g56_B 128 LLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCV 187 (357)
T ss_dssp -CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred eEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 43 2336788999999999987 8999999999999999999999999998877654
No 36
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.91 E-value=5.7e-23 Score=142.54 Aligned_cols=123 Identities=18% Similarity=0.279 Sum_probs=112.4
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP 81 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (131)
+|+|+++++++|+.||.|++||.. ++.+..+.+|.++|.+++|+|+++++++++.|+.+++||+.+++.+..+..|...
T Consensus 20 ~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 99 (814)
T 3mkq_A 20 DFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY 99 (814)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC
Confidence 589999999999999999999986 7778888899999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCc-EEEEeCCCcEEEEeCCCC-eeeEEEecccceEEE
Q psy3840 82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSD-KPVKSFEGHTRVYYL 125 (131)
Q Consensus 82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~ 125 (131)
+.+++|+|++. +++++.|+.|++||++++ .....+.+|...+..
T Consensus 100 v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~ 145 (814)
T 3mkq_A 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145 (814)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEE
T ss_pred EEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEE
Confidence 99999999986 899999999999999987 677777878766544
No 37
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.91 E-value=3.3e-24 Score=137.62 Aligned_cols=123 Identities=15% Similarity=0.265 Sum_probs=99.5
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-C--CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc---eeeeee
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-G--SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ---CEQQFS 76 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~--~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~---~~~~~~ 76 (131)
+|+|++++|++|+.|+.|++||+. + +.+..+.+|.+.|.+++|+|+++++++++.|+.+++||+.+++ ....+.
T Consensus 18 ~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~ 97 (377)
T 3dwl_C 18 AFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLL 97 (377)
T ss_dssp EECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECC
T ss_pred EECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEec
Confidence 579999999999999999999987 4 5677888999999999999999999999999999999999876 566677
Q ss_pred cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCe---eeEEEec-ccceEEE
Q psy3840 77 FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDK---PVKSFEG-HTRVYYL 125 (131)
Q Consensus 77 ~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~---~~~~~~~-~~~~~~~ 125 (131)
.|...+.+++|+|++. +++++.|+.|++||+++++ .+..+.. |...+..
T Consensus 98 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~ 151 (377)
T 3dwl_C 98 RLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILS 151 (377)
T ss_dssp CCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEE
T ss_pred ccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEE
Confidence 7889999999999976 8999999999999999886 3667766 7666544
No 38
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.91 E-value=1.2e-22 Score=146.14 Aligned_cols=124 Identities=19% Similarity=0.330 Sum_probs=114.3
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP 81 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (131)
+|+|+++++++|+.||+|++||.. ++.+..+.+|.+.|.+++|+|+++++++++.|+.+++||+.+++.+..+..|...
T Consensus 622 ~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~ 701 (1249)
T 3sfz_A 622 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQ 701 (1249)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCc
Confidence 589999999999999999999987 7788889999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCC--Cc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840 82 ALDVDWQSN--TS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA 126 (131)
Q Consensus 82 v~~~~~~~~--~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 126 (131)
+.+++|+|+ +. +++++.|+.|++||+++++++..+.+|...+..+
T Consensus 702 v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~ 749 (1249)
T 3sfz_A 702 VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749 (1249)
T ss_dssp EEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEE
T ss_pred EEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEE
Confidence 999999995 33 7899999999999999999999999888776543
No 39
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.91 E-value=1e-23 Score=133.20 Aligned_cols=108 Identities=27% Similarity=0.474 Sum_probs=94.8
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CC--ceeecccccccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCcc--eeeee
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GS--LKSTLGQHKGPIFALKWNK--RGNYILSAGVDKTTIIWDAASGQ--CEQQF 75 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~--~~~~~~~~~~~i~~~~~~~--~~~~~~s~~~d~~i~~~d~~~~~--~~~~~ 75 (131)
+|+|++++|++|+.|++|++||+. ++ .+..+.+|.++|.+++|+| +++++++++.|+++++||+++++ ....+
T Consensus 20 ~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~ 99 (316)
T 3bg1_A 20 QMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH 99 (316)
T ss_dssp EECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEE
T ss_pred eEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEc
Confidence 478999999999999999999986 32 4567889999999999986 48999999999999999998873 55667
Q ss_pred ecCCCCeEEEEEcCC--Cc-EEEEeCCCcEEEEeCCCC
Q psy3840 76 SFHSAPALDVDWQSN--TS-FASCSTDQHIHVCKLHSD 110 (131)
Q Consensus 76 ~~~~~~v~~~~~~~~--~~-~~~~~~d~~i~i~d~~~~ 110 (131)
..|...|.+++|+|+ +. +++++.|+.|++||++.+
T Consensus 100 ~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 100 AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence 788899999999997 55 899999999999999876
No 40
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.91 E-value=1.7e-23 Score=137.13 Aligned_cols=118 Identities=18% Similarity=0.211 Sum_probs=103.1
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCcceeee---eecC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQ---FSFH 78 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~s~~~d~~i~~~d~~~~~~~~~---~~~~ 78 (131)
+|+|++++|++|+.||.|++||+.++.+..+.+|...|.+++|+|++. ++++++.|+.|++||+++.+.... ...|
T Consensus 216 ~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h 295 (435)
T 4e54_B 216 DVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPH 295 (435)
T ss_dssp EEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBC
T ss_pred EECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeec
Confidence 368899999999999999999999888889999999999999999765 788999999999999988664433 3467
Q ss_pred CCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840 79 SAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 120 (131)
Q Consensus 79 ~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 120 (131)
...|.+++|+|++. |++++.|+.|++||+++++....+..|.
T Consensus 296 ~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~ 338 (435)
T 4e54_B 296 RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP 338 (435)
T ss_dssp SSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred cccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence 88999999999987 8999999999999999988777665543
No 41
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.91 E-value=1.7e-22 Score=128.62 Aligned_cols=120 Identities=29% Similarity=0.548 Sum_probs=104.7
Q ss_pred cccCC---CCEEEEEeCCCeEEEEcCC--CCce-eecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee
Q psy3840 3 SSRNN---GSFLATGSYDGYARIWTSD--GSLK-STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS 76 (131)
Q Consensus 3 ~~~~~---~~~l~~~~~d~~i~~~~~~--~~~~-~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~ 76 (131)
+|+|+ +++|++|+.||.|++||+. +..+ ..+.+|.+.|.+++|+|+++++++++.|+.+++||+++++.+. +.
T Consensus 46 ~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~ 124 (368)
T 3mmy_A 46 SFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IA 124 (368)
T ss_dssp EECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EE
T ss_pred EEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-ec
Confidence 47787 6999999999999999987 4444 6778899999999999999999999999999999999988765 45
Q ss_pred cCCCCeEEEEE--cCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceE
Q psy3840 77 FHSAPALDVDW--QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVY 123 (131)
Q Consensus 77 ~~~~~v~~~~~--~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 123 (131)
.|...+.+++| +|++. +++++.|+.|++||+++++++..+..+....
T Consensus 125 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 174 (368)
T 3mmy_A 125 QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCY 174 (368)
T ss_dssp ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEE
T ss_pred cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCce
Confidence 58889999999 88877 8999999999999999999888888776433
No 42
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.91 E-value=1.6e-22 Score=130.53 Aligned_cols=116 Identities=19% Similarity=0.349 Sum_probs=100.6
Q ss_pred ccCC-CCEEEEEeCCCeEEEEcCC-CCceeec-----ccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECC-Ccceeee
Q psy3840 4 SRNN-GSFLATGSYDGYARIWTSD-GSLKSTL-----GQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAA-SGQCEQQ 74 (131)
Q Consensus 4 ~~~~-~~~l~~~~~d~~i~~~~~~-~~~~~~~-----~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~-~~~~~~~ 74 (131)
|.|+ +..|++|+.|++|++||+. ++.+..+ .+|...+.++.++| ++.++++++.|+.+++||++ .++.+..
T Consensus 165 ~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~ 244 (380)
T 3iz6_a 165 YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT 244 (380)
T ss_dssp CCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE
T ss_pred EecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence 4454 5679999999999999987 5555544 57889999999987 88999999999999999998 4577788
Q ss_pred eecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840 75 FSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH 119 (131)
Q Consensus 75 ~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~ 119 (131)
+.+|...|.+++|+|++. +++++.|+.|++||+++++++..+..+
T Consensus 245 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~ 290 (380)
T 3iz6_a 245 YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE 290 (380)
T ss_dssp ECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred ECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc
Confidence 889999999999999987 899999999999999999988887654
No 43
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.91 E-value=8.2e-23 Score=131.54 Aligned_cols=117 Identities=18% Similarity=0.228 Sum_probs=104.6
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCC-EEEEEeCCCcEEEEECCC----cceeeeeec
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAAS----GQCEQQFSF 77 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~s~~~d~~i~~~d~~~----~~~~~~~~~ 77 (131)
+|+|+++++++|+.|+.|++||+.++.+..+..|...|.+++|+|+++ ++++++.|+.+++||+++ +..+..+ .
T Consensus 170 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~ 248 (383)
T 3ei3_B 170 DVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-P 248 (383)
T ss_dssp EEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-E
T ss_pred EECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-c
Confidence 478999999999999999999999888899999999999999999998 999999999999999987 5555555 5
Q ss_pred CCCCeEEEEEcC-CCc-EEEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840 78 HSAPALDVDWQS-NTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 120 (131)
Q Consensus 78 ~~~~v~~~~~~~-~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 120 (131)
+...+.+++|+| ++. +++++.|+.|++||+++++.+..+..|.
T Consensus 249 ~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 249 HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence 788999999999 876 8999999999999999988777776553
No 44
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.7e-23 Score=131.30 Aligned_cols=114 Identities=13% Similarity=0.103 Sum_probs=95.6
Q ss_pred cccC--CCCEEEEEeCCCeEEEEcCC-CCceeecc-cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee-eeeec
Q psy3840 3 SSRN--NGSFLATGSYDGYARIWTSD-GSLKSTLG-QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE-QQFSF 77 (131)
Q Consensus 3 ~~~~--~~~~l~~~~~d~~i~~~~~~-~~~~~~~~-~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~-~~~~~ 77 (131)
+++| +++++++++.|+.|++||+. ++...... .+...+.+++|+|++.++++|+.|+.|++||+++++.+ ..+..
T Consensus 132 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~ 211 (343)
T 3lrv_A 132 YGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV 211 (343)
T ss_dssp ECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC
T ss_pred EcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec
Confidence 4678 99999999999999999987 45544443 45558999999999999999999999999999999877 77777
Q ss_pred -CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840 78 -HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 78 -~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~ 117 (131)
|..+|.+++|+|++. +++++ ++.|++||+++++.+..+.
T Consensus 212 ~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~ 252 (343)
T 3lrv_A 212 DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYP 252 (343)
T ss_dssp CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSC
T ss_pred cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeec
Confidence 889999999999987 77777 5599999999887655443
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.91 E-value=6.2e-22 Score=124.86 Aligned_cols=119 Identities=17% Similarity=0.265 Sum_probs=105.9
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCC-C--ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDG-S--LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS 79 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~-~--~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (131)
+|+|+++++++++.|+.|++||+.. + ....+..|...+.+++|+|+++.+++++.|+.+++||+++++.+..+..|.
T Consensus 104 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~ 183 (337)
T 1gxr_A 104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 183 (337)
T ss_dssp EECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred EEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc
Confidence 4789999999999999999999873 3 456677888999999999999999999999999999999999999998889
Q ss_pred CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccc
Q psy3840 80 APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTR 121 (131)
Q Consensus 80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 121 (131)
..+.+++|+|++. +++++.|+.|++||+++++.+..+.....
T Consensus 184 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 226 (337)
T 1gxr_A 184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ 226 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC
T ss_pred CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCc
Confidence 9999999999976 89999999999999999988887764433
No 46
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.91 E-value=1.6e-22 Score=138.94 Aligned_cols=122 Identities=20% Similarity=0.272 Sum_probs=106.1
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCCceeec----ccccccEEEEEEcCCC--CEEEEEeCCCcEEEEECCCcceeeeee
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTL----GQHKGPIFALKWNKRG--NYILSAGVDKTTIIWDAASGQCEQQFS 76 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~--~~~~s~~~d~~i~~~d~~~~~~~~~~~ 76 (131)
+|+|++++|++|+.|++|++||..+.....+ .+|...|.+++|+|++ ..+++++.|+.|++||+++++....+.
T Consensus 479 ~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~ 558 (694)
T 3dm0_A 479 AFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA 558 (694)
T ss_dssp EECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 4789999999999999999999875443332 4688899999999976 689999999999999999999999999
Q ss_pred cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEE
Q psy3840 77 FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124 (131)
Q Consensus 77 ~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 124 (131)
.|...|.+++|+|++. +++++.|+.|++||+++++++..+..+.....
T Consensus 559 ~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~ 607 (694)
T 3dm0_A 559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA 607 (694)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEE
T ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEE
Confidence 9999999999999987 89999999999999999998887766554333
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.91 E-value=7.3e-23 Score=132.91 Aligned_cols=122 Identities=20% Similarity=0.282 Sum_probs=102.9
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec---C
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF---H 78 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~---~ 78 (131)
+|+|++++|++|+.|+.|++||+. ++.+..+.+|.+.|.+++|+|+++.+++++.|+.+++||+++++.+..+.. +
T Consensus 146 ~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 225 (420)
T 3vl1_A 146 KFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENP 225 (420)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBT
T ss_pred EECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCC
Confidence 478999999999999999999987 777888889999999999999999999999999999999999988877764 2
Q ss_pred CCC---------------------eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe-cccceEE
Q psy3840 79 SAP---------------------ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE-GHTRVYY 124 (131)
Q Consensus 79 ~~~---------------------v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~ 124 (131)
... +.+++|+|++. +++++.|+.|++||+++++.+..+. .|...+.
T Consensus 226 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 294 (420)
T 3vl1_A 226 HDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCN 294 (420)
T ss_dssp TCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEE
T ss_pred CCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCce
Confidence 233 44455578877 8999999999999999998777764 3555443
No 48
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.91 E-value=2e-22 Score=129.91 Aligned_cols=114 Identities=14% Similarity=0.244 Sum_probs=104.9
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeeccc---c---cccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCccee
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQ---H---KGPIFALKWNKRGNYILSAGVD---KTTIIWDAASGQCE 72 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~---~---~~~i~~~~~~~~~~~~~s~~~d---~~i~~~d~~~~~~~ 72 (131)
+|+|++ .+++++.|+.|++||+. ++.+..+.. | ...+.+++|+|+++++++++.| +.+++||+++++.+
T Consensus 193 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~ 271 (397)
T 1sq9_A 193 DISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI 271 (397)
T ss_dssp EECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred EECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCccc
Confidence 478889 99999999999999987 677777777 8 9999999999999999999999 99999999999999
Q ss_pred eeeec-------------CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840 73 QQFSF-------------HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 73 ~~~~~-------------~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~ 117 (131)
..+.. |...+.+++|+|++. +++++.|+.|++||+++++++..+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 272 GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 88888 889999999999977 8999999999999999999999998
No 49
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.91 E-value=2.5e-23 Score=133.54 Aligned_cols=122 Identities=11% Similarity=0.126 Sum_probs=102.6
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCC----ceeeccc-ccccEEEEEEcCCCCEEEEEeCCCcEEEEECC----------
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGS----LKSTLGQ-HKGPIFALKWNKRGNYILSAGVDKTTIIWDAA---------- 67 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~----~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~---------- 67 (131)
+|+|++++|++++.|+.|++||+... ....+.. |...|.+++|+|+++++++++.|+.+++||++
T Consensus 107 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 186 (377)
T 3dwl_C 107 RWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEA 186 (377)
T ss_dssp ECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCS
T ss_pred EECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccc
Confidence 47899999999999999999998733 3566666 99999999999999999999999999999985
Q ss_pred --------CcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCee----eEEEecccceEEE
Q psy3840 68 --------SGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKP----VKSFEGHTRVYYL 125 (131)
Q Consensus 68 --------~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~~ 125 (131)
.++.+..+ .|...+.+++|+|++. +++++.|+.|++||+++++. +..+..|...+..
T Consensus 187 ~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 256 (377)
T 3dwl_C 187 SVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRS 256 (377)
T ss_dssp CSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEE
T ss_pred cccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEE
Confidence 24455556 7888999999999987 99999999999999999877 7788888776543
No 50
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.91 E-value=9.3e-23 Score=128.70 Aligned_cols=114 Identities=20% Similarity=0.300 Sum_probs=99.3
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCC-----CceeecccccccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCc------
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDG-----SLKSTLGQHKGPIFALKWNK--RGNYILSAGVDKTTIIWDAASG------ 69 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~-----~~~~~~~~~~~~i~~~~~~~--~~~~~~s~~~d~~i~~~d~~~~------ 69 (131)
+|+|++++|++|+.||.|++||+.. +....+.+|...|.+++|+| ++.++++++.|+.+++||++++
T Consensus 18 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~ 97 (351)
T 3f3f_A 18 VYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG 97 (351)
T ss_dssp EECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSS
T ss_pred EEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccc
Confidence 4789999999999999999999872 35566778999999999999 5999999999999999999876
Q ss_pred ---ceeeeeecCCCCeEEEEEcCC--Cc-EEEEeCCCcEEEEeCCCCeeeEEE
Q psy3840 70 ---QCEQQFSFHSAPALDVDWQSN--TS-FASCSTDQHIHVCKLHSDKPVKSF 116 (131)
Q Consensus 70 ---~~~~~~~~~~~~v~~~~~~~~--~~-~~~~~~d~~i~i~d~~~~~~~~~~ 116 (131)
+.+..+..|...+.+++|+|+ +. +++++.|+.|++||+++++.+..+
T Consensus 98 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 150 (351)
T 3f3f_A 98 RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSW 150 (351)
T ss_dssp CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCC
T ss_pred cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccc
Confidence 456777788899999999998 76 899999999999999887655443
No 51
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.4e-23 Score=137.42 Aligned_cols=117 Identities=11% Similarity=0.233 Sum_probs=97.4
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccc-----cEEEEEEcCCCCEEEEEeCCCcEEEEECCCcce------
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKG-----PIFALKWNKRGNYILSAGVDKTTIIWDAASGQC------ 71 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~------ 71 (131)
+|+|+|.+||+++.||+|++|+..+ .+..+. |.. .+.+++|+|+|+++++|+.||+|++||+.+++.
T Consensus 92 awSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i 169 (588)
T 2j04_A 92 KPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFY 169 (588)
T ss_dssp EECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCE
T ss_pred EECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccce
Confidence 5899999999999999999999655 555555 665 499999999999999999999999999998753
Q ss_pred -eeee----ecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCee---eEEEe-cccce
Q psy3840 72 -EQQF----SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKP---VKSFE-GHTRV 122 (131)
Q Consensus 72 -~~~~----~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~---~~~~~-~~~~~ 122 (131)
+..+ .+|...|.+++|+|++ +++++.|+.+++||+.+++. .+++. +|...
T Consensus 170 ~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~ 228 (588)
T 2j04_A 170 FESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRK 228 (588)
T ss_dssp EEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSC
T ss_pred eeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCc
Confidence 4555 4566799999999999 99999999999999987763 34553 56433
No 52
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.91 E-value=2.3e-23 Score=132.70 Aligned_cols=112 Identities=20% Similarity=0.292 Sum_probs=100.6
Q ss_pred ccCC----CCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeeee--
Q psy3840 4 SRNN----GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQF-- 75 (131)
Q Consensus 4 ~~~~----~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~~-- 75 (131)
|+|+ +++|++|+.|+.|++||+. ++.+..+.+|...|.+++|+| ++..+++++.|+.|++||+++++.+..+
T Consensus 77 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 77 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp EEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred eccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 5666 6799999999999999987 777888889999999999999 9999999999999999999999888887
Q ss_pred -ecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEE
Q psy3840 76 -SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKS 115 (131)
Q Consensus 76 -~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~ 115 (131)
..+...+.+++|+|++. +++++.|+.|++||+++++.+..
T Consensus 157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 198 (366)
T 3k26_A 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNA 198 (366)
T ss_dssp TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHH
T ss_pred cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccc
Confidence 57888999999999976 89999999999999998765443
No 53
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.90 E-value=3.5e-22 Score=125.20 Aligned_cols=119 Identities=22% Similarity=0.383 Sum_probs=99.8
Q ss_pred CCCEEEEEeCCCeEEEEcCCC---CceeecccccccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCcce--eeeeecCC
Q psy3840 7 NGSFLATGSYDGYARIWTSDG---SLKSTLGQHKGPIFALKWNKR--GNYILSAGVDKTTIIWDAASGQC--EQQFSFHS 79 (131)
Q Consensus 7 ~~~~l~~~~~d~~i~~~~~~~---~~~~~~~~~~~~i~~~~~~~~--~~~~~s~~~d~~i~~~d~~~~~~--~~~~~~~~ 79 (131)
++++|++|+.|++|++||+.. ..+..+..|...|.+++|+|+ +.++++++.|+.+++||++++.. ...+..|.
T Consensus 66 ~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~ 145 (297)
T 2pm7_B 66 FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145 (297)
T ss_dssp GCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCS
T ss_pred cCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeeccc
Confidence 489999999999999999873 245567789999999999997 88999999999999999987632 35567788
Q ss_pred CCeEEEEEcCC-------------C-cEEEEeCCCcEEEEeCCCCe----eeEEEecccceEEE
Q psy3840 80 APALDVDWQSN-------------T-SFASCSTDQHIHVCKLHSDK----PVKSFEGHTRVYYL 125 (131)
Q Consensus 80 ~~v~~~~~~~~-------------~-~~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~ 125 (131)
..+.+++|+|+ + .+++++.|+.|++||+++++ .+..+.+|...+..
T Consensus 146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~ 209 (297)
T 2pm7_B 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD 209 (297)
T ss_dssp SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEE
Confidence 89999999996 2 48999999999999998765 56677888876644
No 54
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7.8e-23 Score=144.00 Aligned_cols=112 Identities=7% Similarity=0.041 Sum_probs=95.3
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCCceee-------c-----ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGSLKST-------L-----GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ 70 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-------~-----~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~ 70 (131)
+|+|++++|++|+.|++|++||+....... + .+|...|.+++|+|+++++++|+.|++|++||+.+++
T Consensus 442 ~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~ 521 (902)
T 2oaj_A 442 LPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQ 521 (902)
T ss_dssp CCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECC
T ss_pred cccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCcc
Confidence 468999999999999999999987332211 1 1788899999999999999999999999999987652
Q ss_pred ---------------------------------------------eeeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEE
Q psy3840 71 ---------------------------------------------CEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVC 105 (131)
Q Consensus 71 ---------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~ 105 (131)
++..+..|...|++++|+|+|.+++|+.|+.|++|
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lw 601 (902)
T 2oaj_A 522 FYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLI 601 (902)
T ss_dssp C---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEE
T ss_pred ccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEE
Confidence 35567778999999999999988899999999999
Q ss_pred eCCCCeeeE
Q psy3840 106 KLHSDKPVK 114 (131)
Q Consensus 106 d~~~~~~~~ 114 (131)
|++++..+.
T Consensus 602 d~~~~~~~~ 610 (902)
T 2oaj_A 602 DRRGPAIIY 610 (902)
T ss_dssp ETTTTEEEE
T ss_pred ECCCCeEEE
Confidence 998877654
No 55
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.90 E-value=2.1e-22 Score=138.36 Aligned_cols=124 Identities=23% Similarity=0.328 Sum_probs=107.2
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeee---ecC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF---SFH 78 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~---~~~ 78 (131)
+|+|++++|++|+.|++|++||+. +.....+.+|...|.+++|+|+++.+++++.|++|++||.......... ..|
T Consensus 437 ~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h 516 (694)
T 3dm0_A 437 VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGH 516 (694)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSC
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCC
Confidence 478999999999999999999987 6777888999999999999999999999999999999998654332222 356
Q ss_pred CCCeEEEEEcCCC---cEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840 79 SAPALDVDWQSNT---SFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA 126 (131)
Q Consensus 79 ~~~v~~~~~~~~~---~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 126 (131)
...+.+++|+|++ .+++++.|+.|++||+++++....+.+|...+..+
T Consensus 517 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v 567 (694)
T 3dm0_A 517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV 567 (694)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 7789999999985 38999999999999999999999999998776543
No 56
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.90 E-value=7.5e-24 Score=137.35 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=95.0
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCC------ceeecccccccEEEEEEcC--------CCCEEEEEeCCCcEEEEECCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGS------LKSTLGQHKGPIFALKWNK--------RGNYILSAGVDKTTIIWDAAS 68 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~------~~~~~~~~~~~i~~~~~~~--------~~~~~~s~~~d~~i~~~d~~~ 68 (131)
++++++.++++|+.|++|++||.... .+..+.+|.+.|.+++|+| +++++++++.|+++++||+++
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 45667789999999999999998632 2345788999999999997 788999999999999999998
Q ss_pred cceeeeeecCCCCeEEEEEcCCC-c-EEEEeCCCcEEEEeCCCCeeeEEE
Q psy3840 69 GQCEQQFSFHSAPALDVDWQSNT-S-FASCSTDQHIHVCKLHSDKPVKSF 116 (131)
Q Consensus 69 ~~~~~~~~~~~~~v~~~~~~~~~-~-~~~~~~d~~i~i~d~~~~~~~~~~ 116 (131)
+..+..+..+..++.+++|+|++ . +++++.|+.|++||+++++.....
T Consensus 176 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~ 225 (393)
T 4gq1_A 176 EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEEN 225 (393)
T ss_dssp TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----
T ss_pred CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccc
Confidence 88777777888999999999985 3 899999999999999988665443
No 57
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.1e-22 Score=128.74 Aligned_cols=123 Identities=24% Similarity=0.401 Sum_probs=104.7
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC---CCceeecccccccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCcc--eeeee
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD---GSLKSTLGQHKGPIFALKWNKR--GNYILSAGVDKTTIIWDAASGQ--CEQQF 75 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~---~~~~~~~~~~~~~i~~~~~~~~--~~~~~s~~~d~~i~~~d~~~~~--~~~~~ 75 (131)
+|+|++++|++|+.|+.|++|++. ++.+..+.+|.+.|.+++|+|+ +.++++++.|+.|++||+.+++ .+..+
T Consensus 18 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 97 (379)
T 3jrp_A 18 VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH 97 (379)
T ss_dssp EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred EEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee
Confidence 478999999999999999999985 4556678889999999999986 9999999999999999999886 66777
Q ss_pred ecCCCCeEEEEEcCC--Cc-EEEEeCCCcEEEEeCCCCe--eeEEEecccceEEE
Q psy3840 76 SFHSAPALDVDWQSN--TS-FASCSTDQHIHVCKLHSDK--PVKSFEGHTRVYYL 125 (131)
Q Consensus 76 ~~~~~~v~~~~~~~~--~~-~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~ 125 (131)
..+...+.+++|+|+ +. +++++.|+.|++||++++. ....+..|...+..
T Consensus 98 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 152 (379)
T 3jrp_A 98 AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 152 (379)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEE
T ss_pred cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEE
Confidence 778899999999998 66 8999999999999998873 33445566655443
No 58
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.90 E-value=1.1e-22 Score=133.28 Aligned_cols=123 Identities=15% Similarity=0.099 Sum_probs=98.2
Q ss_pred cccC-CCCEEEEEeCCCeEEEEcCC-C--CceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeeeeec
Q psy3840 3 SSRN-NGSFLATGSYDGYARIWTSD-G--SLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSF 77 (131)
Q Consensus 3 ~~~~-~~~~l~~~~~d~~i~~~~~~-~--~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~ 77 (131)
+|+| ++++||+|+.||.|++||+. + .....+.+|.+.|.+++|+| ++.++++++.|++|++||++.+........
T Consensus 126 ~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 205 (435)
T 4e54_B 126 AWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASS 205 (435)
T ss_dssp EECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECC
T ss_pred EEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEecc
Confidence 4777 56799999999999999986 2 33445678999999999998 789999999999999999987654333222
Q ss_pred --CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840 78 --HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA 126 (131)
Q Consensus 78 --~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 126 (131)
....+.+++|+|++. +++|+.|+.|++||++ ++++..+.+|...+..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 206 DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHV 256 (435)
T ss_dssp SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEE
T ss_pred CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEee
Confidence 234578899999987 8999999999999987 55667777787766543
No 59
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.1e-22 Score=132.94 Aligned_cols=118 Identities=12% Similarity=0.108 Sum_probs=104.3
Q ss_pred ccCCCCEEEEEeCCCeEEEEcCC-CCceeeccc--ccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee-cCC
Q psy3840 4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQ--HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-FHS 79 (131)
Q Consensus 4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~--~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~-~~~ 79 (131)
++++++++++|+.|+.|++||+. ++.+..+.. |.+.|.+++|+|++.++++++.|+.|++||+++++.+..+. .+.
T Consensus 178 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 257 (437)
T 3gre_A 178 VNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH 257 (437)
T ss_dssp ECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC
T ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC
Confidence 45789999999999999999987 777777777 88999999999999999999999999999999999888775 566
Q ss_pred CCeEEEEEcC----CCc-EEEEeCCCcEEEEeCCCCeeeEEEecccc
Q psy3840 80 APALDVDWQS----NTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTR 121 (131)
Q Consensus 80 ~~v~~~~~~~----~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 121 (131)
.++.+++|+| ++. +++++.|+.|++||+++++++..+.+|..
T Consensus 258 ~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 304 (437)
T 3gre_A 258 APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDE 304 (437)
T ss_dssp EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSS
T ss_pred CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCC
Confidence 7899997765 454 89999999999999999999999887753
No 60
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.8e-22 Score=124.00 Aligned_cols=119 Identities=14% Similarity=0.204 Sum_probs=106.4
Q ss_pred cCCCCEEEEEeCCCeEEEEcCCCCceeeccc-ccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeE
Q psy3840 5 RNNGSFLATGSYDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 83 (131)
Q Consensus 5 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~ 83 (131)
+++++.+++++.|+.|++||. ++....+.. |...+.+++|+|++. +++++.|+.+++||+++++.+..+..|...+.
T Consensus 152 ~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~ 229 (313)
T 3odt_A 152 SFSENKFLTASADKTIKLWQN-DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVY 229 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEET-TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred cCCCCEEEEEECCCCEEEEec-CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEE
Confidence 448999999999999999994 445555555 889999999999988 89999999999999999999999999999999
Q ss_pred EEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840 84 DVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL 125 (131)
Q Consensus 84 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 125 (131)
+++|+|++.+++++.|+.|++||+++++++..+..|...+..
T Consensus 230 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~ 271 (313)
T 3odt_A 230 CIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWS 271 (313)
T ss_dssp EEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEE
T ss_pred EEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEE
Confidence 999999999999999999999999999999999888766543
No 61
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.90 E-value=1.3e-21 Score=123.46 Aligned_cols=122 Identities=23% Similarity=0.362 Sum_probs=104.0
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CC---ceeecc--cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc--eeee
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GS---LKSTLG--QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ--CEQQ 74 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~---~~~~~~--~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~--~~~~ 74 (131)
+|+|+++++++++ |+.|++|++. ++ ....+. .|...+.+++|+|+++++++++.|+.+++||+.+++ ....
T Consensus 58 ~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 136 (337)
T 1gxr_A 58 TISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE 136 (337)
T ss_dssp EECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEE
T ss_pred EEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeee
Confidence 4789999999998 9999999987 22 222222 688999999999999999999999999999999876 5566
Q ss_pred eecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840 75 FSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL 125 (131)
Q Consensus 75 ~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 125 (131)
+..+...+.+++|+|++. +++++.|+.|++||+++++.+..+..|...+..
T Consensus 137 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~ 188 (337)
T 1gxr_A 137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 188 (337)
T ss_dssp EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEE
Confidence 777888999999999976 899999999999999999999999888776544
No 62
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.90 E-value=8.4e-23 Score=136.75 Aligned_cols=122 Identities=7% Similarity=0.032 Sum_probs=102.5
Q ss_pred ccCCCCEEEEEeCCCeEEEEcCC-C-CceeecccccccEEEE--EEcCCC-CEEEEEeCCCcEEEEECCCcceeeeeecC
Q psy3840 4 SRNNGSFLATGSYDGYARIWTSD-G-SLKSTLGQHKGPIFAL--KWNKRG-NYILSAGVDKTTIIWDAASGQCEQQFSFH 78 (131)
Q Consensus 4 ~~~~~~~l~~~~~d~~i~~~~~~-~-~~~~~~~~~~~~i~~~--~~~~~~-~~~~s~~~d~~i~~~d~~~~~~~~~~~~~ 78 (131)
|+++ ..|++|+.||+|++||+. + .+...+.+|.+.|.++ .|+|++ .++++++.|+++++||+++++.+..+..+
T Consensus 274 ~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~ 352 (524)
T 2j04_B 274 FLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSR 352 (524)
T ss_dssp ESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEE
T ss_pred ecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccc
Confidence 4554 589999999999999997 4 3445678899999999 567887 89999999999999999998877776655
Q ss_pred CC--CeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840 79 SA--PALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA 126 (131)
Q Consensus 79 ~~--~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 126 (131)
.. .+.+++|+|++. +++++.|+.|++||++++.++.++.+|...+..+
T Consensus 353 ~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sv 403 (524)
T 2j04_B 353 FRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAI 403 (524)
T ss_dssp CSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEE
T ss_pred cccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEE
Confidence 43 478999999876 8899999999999999999888888898776543
No 63
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.90 E-value=1.1e-21 Score=127.35 Aligned_cols=120 Identities=19% Similarity=0.289 Sum_probs=107.5
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECC-CcceeeeeecCCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA-SGQCEQQFSFHSA 80 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~-~~~~~~~~~~~~~ 80 (131)
+|+|++++|++|+.||.|++||+. ++.+..+.+|...+.+++| ++..+++++.|+.+++||++ ....+..+..|..
T Consensus 141 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 218 (401)
T 4aez_A 141 KWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS 218 (401)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred EECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCC
Confidence 478999999999999999999987 7778888899999999999 46799999999999999999 4666778888999
Q ss_pred CeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEE
Q psy3840 81 PALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124 (131)
Q Consensus 81 ~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 124 (131)
.+.+++|+|++. +++++.|+.|++||+++++++..+..|...+.
T Consensus 219 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~ 263 (401)
T 4aez_A 219 EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVK 263 (401)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCC
T ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEE
Confidence 999999999976 89999999999999999999888887776543
No 64
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.89 E-value=1.8e-21 Score=123.97 Aligned_cols=123 Identities=18% Similarity=0.315 Sum_probs=103.3
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEE--cCCCCEEEEEeCCCcEEEEECCCcceeeee-----
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKW--NKRGNYILSAGVDKTTIIWDAASGQCEQQF----- 75 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~----- 75 (131)
+|+|++++|++++.|+.|++||+.......+..|...|.+++| +|++.++++++.|+.+++||+++++.+..+
T Consensus 93 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 172 (368)
T 3mmy_A 93 CWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPER 172 (368)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSC
T ss_pred EECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCC
Confidence 4789999999999999999999986666667789999999999 889999999999999999999765432111
Q ss_pred --------------------------------------------------------------------------------
Q psy3840 76 -------------------------------------------------------------------------------- 75 (131)
Q Consensus 76 -------------------------------------------------------------------------------- 75 (131)
T Consensus 173 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~ 252 (368)
T 3mmy_A 173 CYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK 252 (368)
T ss_dssp EEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHH
T ss_pred ceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccc
Confidence
Q ss_pred -----ecCCC------------CeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840 76 -----SFHSA------------PALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL 125 (131)
Q Consensus 76 -----~~~~~------------~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 125 (131)
..+.. .+.+++|+|++. +++++.|+.|++||+++++++..+..|...+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 320 (368)
T 3mmy_A 253 DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISA 320 (368)
T ss_dssp HSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEE
T ss_pred cceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceE
Confidence 11111 589999999976 999999999999999999999999988776644
No 65
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.6e-22 Score=125.58 Aligned_cols=113 Identities=22% Similarity=0.349 Sum_probs=100.6
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP 81 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (131)
+|+|++. +++++.|+.|++||+. ++.+..+..|.+.+.+++|+|++ .+++++.|+.+++||+++++.+..+..+...
T Consensus 191 ~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 268 (313)
T 3odt_A 191 AVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAIS 268 (313)
T ss_dssp EEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSC
T ss_pred EEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCce
Confidence 3677777 8999999999999987 77888888999999999999998 5889999999999999999999999989889
Q ss_pred eEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840 82 ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 82 v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 117 (131)
+.+++|+|++.+++++.|+.|++||+++++.+....
T Consensus 269 i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 269 IWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp EEEEEECTTSCEEEEETTSCEEEEESCGGGCCC---
T ss_pred EEEEEEccCCCEEEEeCCCcEEEEeCCCCceeehhh
Confidence 999999999998899999999999999887665544
No 66
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.89 E-value=1.4e-21 Score=124.86 Aligned_cols=122 Identities=17% Similarity=0.143 Sum_probs=105.9
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCC-C----ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECC----------
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDG-S----LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA---------- 67 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~-~----~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~---------- 67 (131)
.|+|+++++++++.|+.|++||+.. . .......|...+.+++|+|+++++++++.|+.+++||++
T Consensus 103 ~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 182 (372)
T 1k8k_C 103 RWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 182 (372)
T ss_dssp EECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred EECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccc
Confidence 4789999999999999999999873 2 223336688999999999999999999999999999954
Q ss_pred --------CcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEE
Q psy3840 68 --------SGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124 (131)
Q Consensus 68 --------~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 124 (131)
.++.+..+..|...+.+++|+|++. +++++.|+.|++||+++++++..+..|...+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~ 248 (372)
T 1k8k_C 183 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLL 248 (372)
T ss_dssp BTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEE
T ss_pred cccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeE
Confidence 5677778888888999999999986 89999999999999999999999988876554
No 67
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.89 E-value=7.9e-22 Score=126.41 Aligned_cols=102 Identities=21% Similarity=0.328 Sum_probs=90.4
Q ss_pred CEEEE--EeCCCeEEEEcCCCCc-----------------eeecccccccEEEEEEcCCCCEEEEEeCCCc-EEEEECCC
Q psy3840 9 SFLAT--GSYDGYARIWTSDGSL-----------------KSTLGQHKGPIFALKWNKRGNYILSAGVDKT-TIIWDAAS 68 (131)
Q Consensus 9 ~~l~~--~~~d~~i~~~~~~~~~-----------------~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~-i~~~d~~~ 68 (131)
..++. |+.+|.|++||+.... +..+.+|.+.|.+++|+|+++++++++.|++ +++||+++
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~ 227 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED 227 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 45555 5789999999987322 6778899999999999999999999999998 99999999
Q ss_pred cceeeeee-c-CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC
Q psy3840 69 GQCEQQFS-F-HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSD 110 (131)
Q Consensus 69 ~~~~~~~~-~-~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~ 110 (131)
++.+..+. + |...|.+++|+|++. +++++.|+.|++||++.+
T Consensus 228 ~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 228 GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 99999988 4 888999999999987 899999999999999765
No 68
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.89 E-value=5.8e-22 Score=128.26 Aligned_cols=123 Identities=29% Similarity=0.603 Sum_probs=110.1
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC-
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP- 81 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~- 81 (131)
+|+|++++|++|+.|+.|++|+..++.+..+..|...+.+++|+|+++++++++.|+.+++||+.+++.+..+..+...
T Consensus 115 ~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 194 (425)
T 1r5m_A 115 AWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGG 194 (425)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence 4789999999999999999999878888899999999999999999999999999999999999999888887766655
Q ss_pred --------------eEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840 82 --------------ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL 125 (131)
Q Consensus 82 --------------v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 125 (131)
+.++.|+|++.+++++.++.|++||+++++.+..+..|...+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~ 252 (425)
T 1r5m_A 195 SSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISV 252 (425)
T ss_dssp -----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEE
T ss_pred cceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEE
Confidence 89999999988999999999999999999888888888776544
No 69
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=1.6e-22 Score=132.83 Aligned_cols=115 Identities=10% Similarity=0.100 Sum_probs=97.0
Q ss_pred cccCCCCEEE----EEeCCCeEEEEcCC-C--------C---ceeecccccccEEEEEEcCC-CCEEEEEeCCCcEEEEE
Q psy3840 3 SSRNNGSFLA----TGSYDGYARIWTSD-G--------S---LKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWD 65 (131)
Q Consensus 3 ~~~~~~~~l~----~~~~d~~i~~~~~~-~--------~---~~~~~~~~~~~i~~~~~~~~-~~~~~s~~~d~~i~~~d 65 (131)
+|+|++++|+ +|+.|+.|++||+. + + ....+.+|...|.+++|+|+ +.++++++.|+++++||
T Consensus 99 ~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD 178 (434)
T 2oit_A 99 ALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQ 178 (434)
T ss_dssp EECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred EEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEE
Confidence 5899999999 78889999999975 1 1 13556679999999999997 88999999999999999
Q ss_pred CCCcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840 66 AASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 66 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~ 118 (131)
++++..+.....|...+.+++|+|++. +++++.|+.|++||++ ++....+..
T Consensus 179 ~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~ 231 (434)
T 2oit_A 179 VTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPC 231 (434)
T ss_dssp ESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECC
T ss_pred cCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccC
Confidence 999876666666778999999999987 9999999999999998 555555543
No 70
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.89 E-value=2.1e-21 Score=122.47 Aligned_cols=108 Identities=21% Similarity=0.403 Sum_probs=91.8
Q ss_pred cccC--CCCEEEEEeCCCeEEEEcCCC----------CceeecccccccEEEEEEcCC--CCEEEEEeCCCcEEEEECCC
Q psy3840 3 SSRN--NGSFLATGSYDGYARIWTSDG----------SLKSTLGQHKGPIFALKWNKR--GNYILSAGVDKTTIIWDAAS 68 (131)
Q Consensus 3 ~~~~--~~~~l~~~~~d~~i~~~~~~~----------~~~~~~~~~~~~i~~~~~~~~--~~~~~s~~~d~~i~~~d~~~ 68 (131)
+|+| ++++|++|+.|+.|++||+.. +.+..+..|.+.+.+++|+|+ +.++++++.|+.+++||+++
T Consensus 64 ~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 143 (351)
T 3f3f_A 64 DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE 143 (351)
T ss_dssp EECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred EEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence 3566 699999999999999999873 446777889999999999998 99999999999999999876
Q ss_pred cce------------------------------------------------------------eeeeecCCCCeEEEEEc
Q psy3840 69 GQC------------------------------------------------------------EQQFSFHSAPALDVDWQ 88 (131)
Q Consensus 69 ~~~------------------------------------------------------------~~~~~~~~~~v~~~~~~ 88 (131)
++. +..+..|...+.+++|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~ 223 (351)
T 3f3f_A 144 PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWA 223 (351)
T ss_dssp TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEEC
T ss_pred hHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEEC
Confidence 432 22344577889999999
Q ss_pred CCC----c-EEEEeCCCcEEEEeCCCC
Q psy3840 89 SNT----S-FASCSTDQHIHVCKLHSD 110 (131)
Q Consensus 89 ~~~----~-~~~~~~d~~i~i~d~~~~ 110 (131)
|++ . +++++.|+.|++||++++
T Consensus 224 p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 224 PSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp CCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred CCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 996 5 899999999999999875
No 71
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.5e-21 Score=126.32 Aligned_cols=118 Identities=17% Similarity=0.308 Sum_probs=107.7
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP 81 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (131)
+|+|+++++++++.|+.|++||+. ++.+..+..|...+.+++|+|++ .+++++.|+.+++||+++++.+..+..+...
T Consensus 254 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 332 (425)
T 1r5m_A 254 EFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVP 332 (425)
T ss_dssp EEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCC
T ss_pred EECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCcc
Confidence 478999999999999999999987 66777788899999999999999 9999999999999999999999999888899
Q ss_pred eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCe--------------------eeEEEecccc
Q psy3840 82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDK--------------------PVKSFEGHTR 121 (131)
Q Consensus 82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~--------------------~~~~~~~~~~ 121 (131)
+.+++|+|++. +++++.|+.|++||+++++ .+..+..|..
T Consensus 333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (425)
T 1r5m_A 333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQD 393 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTC
T ss_pred EEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCccc
Confidence 99999999977 8999999999999999887 8888888844
No 72
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.89 E-value=2.5e-21 Score=124.64 Aligned_cols=120 Identities=12% Similarity=0.154 Sum_probs=102.1
Q ss_pred cccC-CCCEEEEEeCCCeEEEEcCCCCceeecccc---cccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC
Q psy3840 3 SSRN-NGSFLATGSYDGYARIWTSDGSLKSTLGQH---KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH 78 (131)
Q Consensus 3 ~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~ 78 (131)
+|+| +++++++++.|+.|++||+.+..+..+..+ ...+.+++|+|+++.+++++.|+.+++||+ +++.+..+..|
T Consensus 125 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h 203 (383)
T 3ei3_B 125 KFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLH 203 (383)
T ss_dssp EEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECS
T ss_pred EeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccC
Confidence 3677 779999999999999999987766666544 478999999999999999999999999999 57778888889
Q ss_pred CCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCC----CeeeEEEecccceEE
Q psy3840 79 SAPALDVDWQSNTS--FASCSTDQHIHVCKLHS----DKPVKSFEGHTRVYY 124 (131)
Q Consensus 79 ~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~~~ 124 (131)
...+.+++|+|++. +++++.|+.|++||+++ +..+..+ .|...+.
T Consensus 204 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~ 254 (383)
T 3ei3_B 204 KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVN 254 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEE
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceE
Confidence 99999999999975 78999999999999997 5566665 4555543
No 73
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.89 E-value=9.5e-22 Score=126.78 Aligned_cols=109 Identities=20% Similarity=0.326 Sum_probs=98.9
Q ss_pred cccCCCCEEEEEeCC---CeEEEEcCC-CCceeeccc-------------ccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy3840 3 SSRNNGSFLATGSYD---GYARIWTSD-GSLKSTLGQ-------------HKGPIFALKWNKRGNYILSAGVDKTTIIWD 65 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d---~~i~~~~~~-~~~~~~~~~-------------~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d 65 (131)
+|+|++++|++++.| +.|++||+. ++.+..+.. |...+.+++|+|+++++++++.|+.+++||
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 478999999999999 999999987 777778887 999999999999999999999999999999
Q ss_pred CCCcceeeeee------cC---------------CCCeEEEEEcCCC----------c-EEEEeCCCcEEEEeCCCCe
Q psy3840 66 AASGQCEQQFS------FH---------------SAPALDVDWQSNT----------S-FASCSTDQHIHVCKLHSDK 111 (131)
Q Consensus 66 ~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~----------~-~~~~~~d~~i~i~d~~~~~ 111 (131)
+++++.+..+. .+ ...+.+++|+|++ . +++++.|+.|++||+++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 99999998888 77 8899999999996 4 8999999999999998763
No 74
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.88 E-value=2e-21 Score=124.18 Aligned_cols=109 Identities=19% Similarity=0.394 Sum_probs=96.8
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCC---ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeee--eec
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ--FSF 77 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~--~~~ 77 (131)
+|+|+++++++++.|+.|++||+... .+..+.+|...|.+++|+|+++++++++.|+.+++||+.+++.... +..
T Consensus 15 ~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 94 (372)
T 1k8k_C 15 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR 94 (372)
T ss_dssp EECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCC
T ss_pred EECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeec
Confidence 47899999999999999999998744 7788889999999999999999999999999999999988764433 355
Q ss_pred CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCe
Q psy3840 78 HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDK 111 (131)
Q Consensus 78 ~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~ 111 (131)
+...+.+++|+|++. +++++.|+.|++||++.++
T Consensus 95 ~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~ 129 (372)
T 1k8k_C 95 INRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 129 (372)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT
T ss_pred CCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCC
Confidence 778999999999976 8999999999999998775
No 75
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.88 E-value=1e-21 Score=132.46 Aligned_cols=107 Identities=14% Similarity=0.292 Sum_probs=98.3
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeeccc-ccccEEEEEEcC----------CCCEEEEEeCCCcEEEEECCCc-
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQ-HKGPIFALKWNK----------RGNYILSAGVDKTTIIWDAASG- 69 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~-~~~~i~~~~~~~----------~~~~~~s~~~d~~i~~~d~~~~- 69 (131)
+|+|++++|++++.|+.|++||+. ++.+..+.+ |...|.+++|+| +++++++++.|+.|++||+.++
T Consensus 495 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 574 (615)
T 1pgu_A 495 SISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM 574 (615)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred EECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc
Confidence 478999999999999999999996 777777777 999999999999 9999999999999999999987
Q ss_pred ceeeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCC
Q psy3840 70 QCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS 109 (131)
Q Consensus 70 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~ 109 (131)
+.+..+..|...|.+++|+|++.+++++.|+.|++|++++
T Consensus 575 ~~~~~~~~h~~~v~~l~~s~~~~l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 575 KIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNVVL 614 (615)
T ss_dssp CCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEEC-
T ss_pred eechhhhcCccceEEEEEcCCCCeEEecCCceEEEEeeec
Confidence 7788888899999999999997799999999999999875
No 76
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.88 E-value=3.6e-21 Score=126.56 Aligned_cols=108 Identities=27% Similarity=0.474 Sum_probs=97.7
Q ss_pred ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840 4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA 82 (131)
Q Consensus 4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v 82 (131)
+.++++++++|+.||.|++||+. ++.+..+.+|.+.|.+++|+|++ .+++++.|+++++||+++++.+..+..|...+
T Consensus 128 ~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v 206 (464)
T 3v7d_B 128 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV 206 (464)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred EEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCcc
Confidence 45578899999999999999987 77888889999999999999987 99999999999999999999999999999999
Q ss_pred EEEEEcC--CCc-EEEEeCCCcEEEEeCCCCee
Q psy3840 83 LDVDWQS--NTS-FASCSTDQHIHVCKLHSDKP 112 (131)
Q Consensus 83 ~~~~~~~--~~~-~~~~~~d~~i~i~d~~~~~~ 112 (131)
.+++|++ ++. +++++.|+.|++||++++..
T Consensus 207 ~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~ 239 (464)
T 3v7d_B 207 RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 239 (464)
T ss_dssp EEEEEEESSSCEEEEEEETTSCEEEEECCCCCC
T ss_pred EEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcc
Confidence 9999984 555 89999999999999987653
No 77
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.3e-21 Score=126.69 Aligned_cols=117 Identities=16% Similarity=0.318 Sum_probs=102.4
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCC-----CceeecccccccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCcc------
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDG-----SLKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQ------ 70 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~-~~~~~s~~~d~~i~~~d~~~~~------ 70 (131)
+|+|++++|++|+.|+.|++|++.. +.+..+.+|...|.+++|+|+ +.++++++.|+.|++||+++++
T Consensus 74 ~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 153 (416)
T 2pm9_A 74 DWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY 153 (416)
T ss_dssp EECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred EECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc
Confidence 4789999999999999999999874 477788899999999999997 8999999999999999999876
Q ss_pred eeee---eecCCCCeEEEEEcCC-Cc-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840 71 CEQQ---FSFHSAPALDVDWQSN-TS-FASCSTDQHIHVCKLHSDKPVKSFEGH 119 (131)
Q Consensus 71 ~~~~---~~~~~~~v~~~~~~~~-~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~ 119 (131)
.... ...|...+.+++|+|+ +. +++++.|+.|++||+++++.+..+..+
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 207 (416)
T 2pm9_A 154 TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYT 207 (416)
T ss_dssp CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCC
T ss_pred cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecc
Confidence 3322 3567789999999998 55 899999999999999999998888765
No 78
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.88 E-value=3e-21 Score=125.17 Aligned_cols=114 Identities=19% Similarity=0.309 Sum_probs=99.2
Q ss_pred EEEeCCCeEEEEcCCC-----CceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCc-------ceeeeeecC
Q psy3840 12 ATGSYDGYARIWTSDG-----SLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASG-------QCEQQFSFH 78 (131)
Q Consensus 12 ~~~~~d~~i~~~~~~~-----~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~-------~~~~~~~~~ 78 (131)
++++.||.|++|++.. .....+.+|.+.|.+++|+| ++.++++++.|+.|++||+.++ +.+..+..|
T Consensus 51 ~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h 130 (402)
T 2aq5_A 51 CEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH 130 (402)
T ss_dssp BCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC
T ss_pred EEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC
Confidence 3467899999999862 34556788999999999999 9999999999999999999987 567788889
Q ss_pred CCCeEEEEEcCCC-c-EEEEeCCCcEEEEeCCCCeeeEEE--ecccceEEE
Q psy3840 79 SAPALDVDWQSNT-S-FASCSTDQHIHVCKLHSDKPVKSF--EGHTRVYYL 125 (131)
Q Consensus 79 ~~~v~~~~~~~~~-~-~~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~ 125 (131)
...|.+++|+|++ . +++++.|+.|++||+++++.+..+ ..|...+..
T Consensus 131 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 181 (402)
T 2aq5_A 131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYS 181 (402)
T ss_dssp SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEE
T ss_pred CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEE
Confidence 9999999999996 3 899999999999999999999998 677766544
No 79
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.88 E-value=3e-21 Score=122.70 Aligned_cols=122 Identities=11% Similarity=0.165 Sum_probs=103.6
Q ss_pred ccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcC---CCCEEEEEeCCCcEEEEECCCcceeeeee----
Q psy3840 4 SRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNK---RGNYILSAGVDKTTIIWDAASGQCEQQFS---- 76 (131)
Q Consensus 4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~s~~~d~~i~~~d~~~~~~~~~~~---- 76 (131)
|+++++++++++.|+.|++||+..........|...+.+++|+| ++..+++++.|+.+++||+++++....+.
T Consensus 176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 255 (357)
T 3i2n_A 176 YNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSE 255 (357)
T ss_dssp CC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEE
T ss_pred cCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeecc
Confidence 78999999999999999999998655556677889999999999 89999999999999999999877665554
Q ss_pred -cCCCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCCC-------------------eeeEEEecccceEEE
Q psy3840 77 -FHSAPALDVDWQSNTS--FASCSTDQHIHVCKLHSD-------------------KPVKSFEGHTRVYYL 125 (131)
Q Consensus 77 -~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~-------------------~~~~~~~~~~~~~~~ 125 (131)
.|...+.+++|+|++. +++++.|+.|++||++++ +.+..+..|...+..
T Consensus 256 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~ 326 (357)
T 3i2n_A 256 KAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS 326 (357)
T ss_dssp ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE
T ss_pred CCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeE
Confidence 7889999999999865 789999999999999754 356667777766543
No 80
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.88 E-value=5.7e-21 Score=121.66 Aligned_cols=108 Identities=23% Similarity=0.465 Sum_probs=98.8
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP 81 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (131)
+|+|++++|++|+.|+.|++||+. ++.+..+.+|.+.|.+++|+|+++++++++.|+.+++||+.+++.+..+. +...
T Consensus 39 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~ 117 (369)
T 3zwl_B 39 KYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVP 117 (369)
T ss_dssp EECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSC
T ss_pred EEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCC
Confidence 478999999999999999999986 77888889999999999999999999999999999999999999888887 6789
Q ss_pred eEEEEEcCCCc-EEEEeCC-----CcEEEEeCCCCe
Q psy3840 82 ALDVDWQSNTS-FASCSTD-----QHIHVCKLHSDK 111 (131)
Q Consensus 82 v~~~~~~~~~~-~~~~~~d-----~~i~i~d~~~~~ 111 (131)
+.+++|+|++. +++++.+ +.|++||++...
T Consensus 118 v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~ 153 (369)
T 3zwl_B 118 VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS 153 (369)
T ss_dssp EEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred eEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence 99999999987 7888888 999999987653
No 81
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.88 E-value=1.4e-21 Score=127.60 Aligned_cols=117 Identities=14% Similarity=0.195 Sum_probs=99.2
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC--CCcee-------ecccccccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCcce-
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD--GSLKS-------TLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQC- 71 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~--~~~~~-------~~~~~~~~i~~~~~~~~~-~~~~s~~~d~~i~~~d~~~~~~- 71 (131)
+|+|++++|++| .|+.|++||+. +.... .+.+|...|.+++|+|++ ..+++++.|+.|++||+++++.
T Consensus 184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 478999999998 79999999997 33333 366899999999999998 9999999999999999999876
Q ss_pred ---eeeeecCCC------------CeEEEEEcCCCc-EEEEeCCCcEEEEeCCC-CeeeEEEecccc
Q psy3840 72 ---EQQFSFHSA------------PALDVDWQSNTS-FASCSTDQHIHVCKLHS-DKPVKSFEGHTR 121 (131)
Q Consensus 72 ---~~~~~~~~~------------~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~ 121 (131)
+..+..+.. .+.+++|+|+++ +++++. +.|++||+++ ++++..+..|..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~ 328 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEY 328 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGG
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccc
Confidence 677777665 899999999987 777777 9999999997 888888887764
No 82
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.88 E-value=5.7e-21 Score=123.94 Aligned_cols=118 Identities=25% Similarity=0.356 Sum_probs=103.3
Q ss_pred CCCEEEEEeCCCeEEEEcCC--CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEE
Q psy3840 7 NGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD 84 (131)
Q Consensus 7 ~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~ 84 (131)
+++.+++|+.|+.|++||+. +..+..+.+|.+.|.+++|+|+++++++++.|+.+++||+++++.+..+..+...+.+
T Consensus 185 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 264 (401)
T 4aez_A 185 NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA 264 (401)
T ss_dssp ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCE
T ss_pred CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEE
Confidence 57899999999999999987 5667788899999999999999999999999999999999999998888889999999
Q ss_pred EEEcCCCc--EEEEe--CCCcEEEEeCCCCeeeEEEecccceEE
Q psy3840 85 VDWQSNTS--FASCS--TDQHIHVCKLHSDKPVKSFEGHTRVYY 124 (131)
Q Consensus 85 ~~~~~~~~--~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~ 124 (131)
++|+|++. +++++ .|+.|++||+++++++..+..+.....
T Consensus 265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~ 308 (401)
T 4aez_A 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTS 308 (401)
T ss_dssp EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEE
T ss_pred EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 99999754 55554 699999999999999888875544333
No 83
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.88 E-value=4.9e-21 Score=125.94 Aligned_cols=114 Identities=20% Similarity=0.297 Sum_probs=103.0
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP 81 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (131)
+++++++++++|+.|+.|++||+. ++.+..+.+|...+.+++|+|+++.+++++.|+.+++||+++++.+..+..|...
T Consensus 275 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~ 354 (464)
T 3v7d_B 275 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 354 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCc
Confidence 346778999999999999999987 7778888899999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840 82 ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 82 v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 117 (131)
+.++++++ ..+++++.|+.|++||+++++......
T Consensus 355 v~~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~ 389 (464)
T 3v7d_B 355 VGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSYH 389 (464)
T ss_dssp EEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEEcC-CEEEEEeCCCcEEEEECCCCceeeeec
Confidence 99999974 459999999999999999887666554
No 84
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.8e-21 Score=137.14 Aligned_cols=109 Identities=12% Similarity=0.128 Sum_probs=96.2
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA 82 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v 82 (131)
+|+|++++||+|+.||+|++|+..+........|..+|.+++|+| ++++++++.|++|++||+++++.+..+. +...|
T Consensus 24 afspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V 101 (902)
T 2oaj_A 24 AFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKI 101 (902)
T ss_dssp EEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCE
T ss_pred EECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCE
Confidence 589999999999999999999987544444445788999999999 8899999999999999999999888886 56789
Q ss_pred EEEEEcCCCc-EEEEeCCCcEEEEeCCCCeee
Q psy3840 83 LDVDWQSNTS-FASCSTDQHIHVCKLHSDKPV 113 (131)
Q Consensus 83 ~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~ 113 (131)
++++|+|++. +++|+.|+.|++||+++++..
T Consensus 102 ~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 102 TSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS 133 (902)
T ss_dssp EEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 9999999987 899999999999999988753
No 85
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.88 E-value=7.7e-21 Score=124.44 Aligned_cols=123 Identities=20% Similarity=0.337 Sum_probs=104.4
Q ss_pred cccCCCC-EEEEEeCCCeEEEEcCCC-Cc-------eeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCc---
Q psy3840 3 SSRNNGS-FLATGSYDGYARIWTSDG-SL-------KSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASG--- 69 (131)
Q Consensus 3 ~~~~~~~-~l~~~~~d~~i~~~~~~~-~~-------~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~--- 69 (131)
+|+|++. +|++|+.||.|++|++.. .. ...+.+|...|.+++|+| ++..+++++.|+.|++||++++
T Consensus 188 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~ 267 (430)
T 2xyi_A 188 SWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS 267 (430)
T ss_dssp EECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS
T ss_pred EeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC
Confidence 4788887 999999999999999873 11 345668999999999999 7889999999999999999987
Q ss_pred ceeeeeecCCCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCC-CeeeEEEecccceEEE
Q psy3840 70 QCEQQFSFHSAPALDVDWQSNTS--FASCSTDQHIHVCKLHS-DKPVKSFEGHTRVYYL 125 (131)
Q Consensus 70 ~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~ 125 (131)
+.+..+..|...+.+++|+|++. +++++.|+.|++||+++ .+++..+..|...+..
T Consensus 268 ~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~ 326 (430)
T 2xyi_A 268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ 326 (430)
T ss_dssp SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEE
T ss_pred cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEE
Confidence 56677778889999999999864 78999999999999998 5678888888776544
No 86
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.7e-21 Score=134.13 Aligned_cols=123 Identities=24% Similarity=0.401 Sum_probs=105.2
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC---CCceeecccccccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCcc--eeeee
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD---GSLKSTLGQHKGPIFALKWNKR--GNYILSAGVDKTTIIWDAASGQ--CEQQF 75 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~---~~~~~~~~~~~~~i~~~~~~~~--~~~~~s~~~d~~i~~~d~~~~~--~~~~~ 75 (131)
+|+|+++++++|+.||.|++||+. +.....+.+|.++|.+++|+|+ ++.+++++.||.|++||+.+++ .+..+
T Consensus 16 ~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~ 95 (753)
T 3jro_A 16 VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH 95 (753)
T ss_dssp CCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred EECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc
Confidence 588999999999999999999985 4556778899999999999987 9999999999999999999886 66777
Q ss_pred ecCCCCeEEEEEcCC--Cc-EEEEeCCCcEEEEeCCCCe--eeEEEecccceEEE
Q psy3840 76 SFHSAPALDVDWQSN--TS-FASCSTDQHIHVCKLHSDK--PVKSFEGHTRVYYL 125 (131)
Q Consensus 76 ~~~~~~v~~~~~~~~--~~-~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~ 125 (131)
..|...+.+++|+|+ +. +++++.|+.|++||++++. ....+.+|...+..
T Consensus 96 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~ 150 (753)
T 3jro_A 96 AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 150 (753)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEE
T ss_pred cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEE
Confidence 788899999999998 66 8999999999999998873 34445566655443
No 87
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.7e-21 Score=125.25 Aligned_cols=121 Identities=17% Similarity=0.319 Sum_probs=104.8
Q ss_pred cccCC-CCEEEEEeCCCeEEEEcCC-CCceeecccc------cccEEEEEEcCCC-CEEEEEeCCC---cEEEEECCCc-
Q psy3840 3 SSRNN-GSFLATGSYDGYARIWTSD-GSLKSTLGQH------KGPIFALKWNKRG-NYILSAGVDK---TTIIWDAASG- 69 (131)
Q Consensus 3 ~~~~~-~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~------~~~i~~~~~~~~~-~~~~s~~~d~---~i~~~d~~~~- 69 (131)
+|+|+ +.++++++.|+.|++||+. ++.+..+..+ ...+.+++|+|++ .++++++.|+ .+++||++++
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN 251 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence 46787 7899999999999999987 5566666655 7899999999986 6899999998 9999999986
Q ss_pred ceeeeee-cCCCCeEEEEEcC-CCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceE
Q psy3840 70 QCEQQFS-FHSAPALDVDWQS-NTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVY 123 (131)
Q Consensus 70 ~~~~~~~-~~~~~v~~~~~~~-~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 123 (131)
+.+..+. .|...+.+++|+| ++. +++++.|+.|++||+++++++..+..|...+
T Consensus 252 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v 308 (416)
T 2pm9_A 252 TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWC 308 (416)
T ss_dssp SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCC
T ss_pred CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCce
Confidence 5667777 7889999999999 666 8999999999999999999999998887654
No 88
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3e-21 Score=126.90 Aligned_cols=123 Identities=15% Similarity=0.069 Sum_probs=104.9
Q ss_pred cccCCCCEE-EEEeCCCeEEEEcCC---CCceeecc--cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceee---
Q psy3840 3 SSRNNGSFL-ATGSYDGYARIWTSD---GSLKSTLG--QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ--- 73 (131)
Q Consensus 3 ~~~~~~~~l-~~~~~d~~i~~~~~~---~~~~~~~~--~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~--- 73 (131)
+|+|++++| ++|+.|+.|++|++. ++.+..+. .|...+.+++|+|+++++++++.++.+++|++.+++...
T Consensus 109 ~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~ 188 (450)
T 2vdu_B 109 RLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQ 188 (450)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCC
T ss_pred EEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccc
Confidence 479999996 889899999999976 45556555 566889999999999999999999999999998876544
Q ss_pred -eeecCCCCeEEEEEcCC---Cc-EEEEeCCCcEEEEeCCCCeeeEE-EecccceEEE
Q psy3840 74 -QFSFHSAPALDVDWQSN---TS-FASCSTDQHIHVCKLHSDKPVKS-FEGHTRVYYL 125 (131)
Q Consensus 74 -~~~~~~~~v~~~~~~~~---~~-~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~ 125 (131)
.+..|...+.+++|+|+ +. +++++.|+.|++||+++++.+.. +.+|...+..
T Consensus 189 ~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 246 (450)
T 2vdu_B 189 EPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSS 246 (450)
T ss_dssp CCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEE
T ss_pred eeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEE
Confidence 67778899999999999 86 89999999999999999988877 4577766544
No 89
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=6.3e-21 Score=121.50 Aligned_cols=116 Identities=10% Similarity=-0.018 Sum_probs=91.9
Q ss_pred EEEEeCCCeEEEEcCCCC----------ceeec-ccccccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCcceeeeeec
Q psy3840 11 LATGSYDGYARIWTSDGS----------LKSTL-GQHKGPIFALKWNK--RGNYILSAGVDKTTIIWDAASGQCEQQFSF 77 (131)
Q Consensus 11 l~~~~~d~~i~~~~~~~~----------~~~~~-~~~~~~i~~~~~~~--~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~ 77 (131)
+++++.|++|++|+..+. .+... .+|.++|.+++|+| +++++++++.|+.+++||+++++.......
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 167 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA 167 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Confidence 777788888888865421 12222 24668899999999 999999999999999999999988665533
Q ss_pred -CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeee-EEEec-ccceEEEE
Q psy3840 78 -HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPV-KSFEG-HTRVYYLA 126 (131)
Q Consensus 78 -~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~-~~~~~-~~~~~~~~ 126 (131)
+...+.+++|+|++. +++|+.|+.|++||+++++.+ ..+.. |...+..+
T Consensus 168 ~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l 220 (343)
T 3lrv_A 168 KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEV 220 (343)
T ss_dssp CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEE
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEE
Confidence 445799999999987 788999999999999999887 77877 87766543
No 90
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.4e-21 Score=126.63 Aligned_cols=116 Identities=11% Similarity=0.061 Sum_probs=102.5
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CC----ceeecccccccEEEEEEcCC---CCEEEEEeCCCcEEEEECCCcceeee
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GS----LKSTLGQHKGPIFALKWNKR---GNYILSAGVDKTTIIWDAASGQCEQQ 74 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~----~~~~~~~~~~~i~~~~~~~~---~~~~~s~~~d~~i~~~d~~~~~~~~~ 74 (131)
+|+|++++|++|+.++.|++|++. +. ....+.+|.+.|.+++|+|+ ++++++++.|+.|++||+++++.+..
T Consensus 156 ~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 156 SIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK 235 (450)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE
T ss_pred EEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee
Confidence 478999999999999999999986 33 23367789999999999999 99999999999999999999888777
Q ss_pred -eecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840 75 -FSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH 119 (131)
Q Consensus 75 -~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~ 119 (131)
+.+|...+.+++|+ ++. +++++.|+.|++||+++++++..+..+
T Consensus 236 ~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~ 281 (450)
T 2vdu_B 236 WLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYN 281 (450)
T ss_dssp ECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECH
T ss_pred eecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecch
Confidence 55788899999999 876 899999999999999999988887643
No 91
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.88 E-value=4.4e-21 Score=129.37 Aligned_cols=119 Identities=13% Similarity=0.176 Sum_probs=106.5
Q ss_pred CCEEEEEeC-CCeEEEEcCCCCce--eecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec-CCCCeE
Q psy3840 8 GSFLATGSY-DGYARIWTSDGSLK--STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF-HSAPAL 83 (131)
Q Consensus 8 ~~~l~~~~~-d~~i~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~-~~~~v~ 83 (131)
++++++++. |+.|++||+..... ..+..|...+.+++|+|+++++++++.|+.+++||+.+++.+..+.. |...+.
T Consensus 456 ~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~ 535 (615)
T 1pgu_A 456 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKIN 535 (615)
T ss_dssp SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEE
T ss_pred CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCcee
Confidence 788999999 99999999984444 66788999999999999999999999999999999999999888887 889999
Q ss_pred EEEEcC----------CCc-EEEEeCCCcEEEEeCCCC-eeeEEEecccceEEEE
Q psy3840 84 DVDWQS----------NTS-FASCSTDQHIHVCKLHSD-KPVKSFEGHTRVYYLA 126 (131)
Q Consensus 84 ~~~~~~----------~~~-~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~ 126 (131)
+++|+| ++. +++++.|+.|++||++++ +++..+.+|...+..+
T Consensus 536 ~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l 590 (615)
T 1pgu_A 536 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNL 590 (615)
T ss_dssp EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEE
T ss_pred EEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEE
Confidence 999999 877 899999999999999998 7888888888766543
No 92
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.88 E-value=2.3e-20 Score=118.02 Aligned_cols=110 Identities=16% Similarity=0.302 Sum_probs=98.1
Q ss_pred CCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEE
Q psy3840 7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV 85 (131)
Q Consensus 7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~ 85 (131)
....+++++.|+.|++||+. ++.+..+.+|.+.|.+++|+|+++++++++.|+.+++||+++.+.+..+.. ...+.++
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~ 262 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINAL 262 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEE
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEee
Confidence 34678899999999999987 677788889999999999999999999999999999999999998888775 4689999
Q ss_pred EEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840 86 DWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 86 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 117 (131)
.|+|++.+++++.|+.|++||++++..+..+.
T Consensus 263 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 294 (340)
T 4aow_A 263 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELK 294 (340)
T ss_dssp EECSSSSEEEEEETTEEEEEETTTTEEEEEEC
T ss_pred ecCCCCceeeccCCCEEEEEECCCCeEEEecc
Confidence 99999888889999999999999887776654
No 93
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.1e-20 Score=123.47 Aligned_cols=123 Identities=13% Similarity=0.080 Sum_probs=101.4
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC----CCceeeccc------------ccccEEEEE--EcCCCCEEEEEeCCCcEEEE
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD----GSLKSTLGQ------------HKGPIFALK--WNKRGNYILSAGVDKTTIIW 64 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~----~~~~~~~~~------------~~~~i~~~~--~~~~~~~~~s~~~d~~i~~~ 64 (131)
+|+|++++|++|+.|+.|++||+. ++....... +...+.++. +++++..+++++.|+.|++|
T Consensus 118 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 197 (437)
T 3gre_A 118 TMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIF 197 (437)
T ss_dssp EECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred EEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 478899999999999999999983 433332222 344566666 55789999999999999999
Q ss_pred ECCCcceeeeeec--CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe-cccceEEE
Q psy3840 65 DAASGQCEQQFSF--HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE-GHTRVYYL 125 (131)
Q Consensus 65 d~~~~~~~~~~~~--~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~ 125 (131)
|+++++.+..+.. |...+.+++|+|++. +++++.|+.|++||+++++++..+. .|...+..
T Consensus 198 d~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 262 (437)
T 3gre_A 198 DIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITH 262 (437)
T ss_dssp ETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEE
T ss_pred eCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEE
Confidence 9999999998887 788999999999977 8999999999999999999999886 56555544
No 94
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.88 E-value=7e-21 Score=122.47 Aligned_cols=124 Identities=17% Similarity=0.113 Sum_probs=100.7
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCCcee--ecccccccEEEEEEcCCCCEEEEEeCCC----cEEEEECCCcce----e
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGSLKS--TLGQHKGPIFALKWNKRGNYILSAGVDK----TTIIWDAASGQC----E 72 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~s~~~d~----~i~~~d~~~~~~----~ 72 (131)
+|+|+++++++++.++.+.+|...++.+. ....|...+.+++|+|+++.+++++.++ .++.|++..... .
T Consensus 183 ~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~ 262 (365)
T 4h5i_A 183 HFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRS 262 (365)
T ss_dssp EECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEE
T ss_pred EEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceee
Confidence 48999999999987765555555555543 4456888999999999999999998876 578888876543 3
Q ss_pred eeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEE-ecccceEEEE
Q psy3840 73 QQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSF-EGHTRVYYLA 126 (131)
Q Consensus 73 ~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~ 126 (131)
..+..+...|++++|+|+++ |++|+.|+.|+|||+++++++.++ .+|...+..+
T Consensus 263 ~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v 318 (365)
T 4h5i_A 263 KQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEV 318 (365)
T ss_dssp EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEE
T ss_pred eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEE
Confidence 45667888999999999988 899999999999999999999886 6898876543
No 95
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.87 E-value=1e-20 Score=124.07 Aligned_cols=121 Identities=21% Similarity=0.390 Sum_probs=107.9
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP 81 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (131)
+++++++++++|+.||.|++||+. ++.+..+.+|.+.|.+++|+ +..+++++.|+.+++||+.+++.+..+..|...
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~ 201 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTST 201 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCc
Confidence 456779999999999999999987 78888899999999999997 679999999999999999999999999999999
Q ss_pred eEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840 82 ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA 126 (131)
Q Consensus 82 v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 126 (131)
+.++.+++ ..+++++.|+.|++||+++++.+..+.+|...+..+
T Consensus 202 v~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 245 (445)
T 2ovr_B 202 VRCMHLHE-KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245 (445)
T ss_dssp EEEEEEET-TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred EEEEEecC-CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEE
Confidence 99999964 348999999999999999999999998888776543
No 96
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.4e-20 Score=118.79 Aligned_cols=122 Identities=11% Similarity=0.188 Sum_probs=109.2
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC--CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA 80 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (131)
+|+|+++.+++++.|+.|++||+. +..+..+..|...+.+++|+|++.++++++.|+.+++||+++++.+..+. +..
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~ 260 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDC 260 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCC
Confidence 378899999999999999999987 46677788899999999999999999999999999999999999888877 567
Q ss_pred CeEEEEEcCCCc-EEEEeCCC--------------cEEEEeCCCCeeeEEEecccceEEE
Q psy3840 81 PALDVDWQSNTS-FASCSTDQ--------------HIHVCKLHSDKPVKSFEGHTRVYYL 125 (131)
Q Consensus 81 ~v~~~~~~~~~~-~~~~~~d~--------------~i~i~d~~~~~~~~~~~~~~~~~~~ 125 (131)
.+..++|+|++. +++++.++ .+++||+++++++..+.+|...+..
T Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~ 320 (369)
T 3zwl_B 261 PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNT 320 (369)
T ss_dssp CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEE
Confidence 899999999987 78887777 8999999999999999988877654
No 97
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.87 E-value=2.7e-20 Score=117.67 Aligned_cols=122 Identities=18% Similarity=0.265 Sum_probs=105.9
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCC--ceeecccccccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCcceeeeeecC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGS--LKSTLGQHKGPIFALKWNKR--GNYILSAGVDKTTIIWDAASGQCEQQFSFH 78 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~ 78 (131)
.++++++.+++|+.|+.+++||.... ......+|...+..++|+++ ...+++++.|+.+++||+++++.+..+..|
T Consensus 135 ~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h 214 (340)
T 4aow_A 135 AFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH 214 (340)
T ss_dssp EECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCC
Confidence 36788999999999999999998733 34455678999999999885 457889999999999999999999999999
Q ss_pred CCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEE
Q psy3840 79 SAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124 (131)
Q Consensus 79 ~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 124 (131)
..+|.+++|+|++. +++++.|+.|++||+++.+++..+..+.....
T Consensus 215 ~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~ 261 (340)
T 4aow_A 215 TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA 261 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEe
Confidence 99999999999987 89999999999999999999988887655433
No 98
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.4e-21 Score=130.82 Aligned_cols=112 Identities=11% Similarity=0.025 Sum_probs=92.9
Q ss_pred CCEEEEEeCCCeEEEEcCCCC------------ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc-eeee
Q psy3840 8 GSFLATGSYDGYARIWTSDGS------------LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ-CEQQ 74 (131)
Q Consensus 8 ~~~l~~~~~d~~i~~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~-~~~~ 74 (131)
+.+|++++.|++|++||+... +...+.+|...|.+++|+|+ ..+++|+.||+|++||++++. ....
T Consensus 225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~ 303 (524)
T 2j04_B 225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFY 303 (524)
T ss_dssp SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEE
T ss_pred CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEE
Confidence 689999999999999998622 12356789999999999985 489999999999999999764 4456
Q ss_pred eecCCCCeEEE--EEcCCC-c-EEEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840 75 FSFHSAPALDV--DWQSNT-S-FASCSTDQHIHVCKLHSDKPVKSFEGHT 120 (131)
Q Consensus 75 ~~~~~~~v~~~--~~~~~~-~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 120 (131)
+..|...|.++ .|+|++ . +++++.|++|++||+++++++..+.+|.
T Consensus 304 ~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~ 353 (524)
T 2j04_B 304 DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF 353 (524)
T ss_dssp EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC
T ss_pred eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc
Confidence 78899999999 567776 5 8999999999999999887766665554
No 99
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.87 E-value=1.2e-20 Score=120.06 Aligned_cols=119 Identities=15% Similarity=0.257 Sum_probs=99.9
Q ss_pred CCEEEEEeCCCeEEEEcCC-CCceeeccc-----ccccEEEEEEcCC----CCEEEEEeCCCcEEEEECCCcceeeeeec
Q psy3840 8 GSFLATGSYDGYARIWTSD-GSLKSTLGQ-----HKGPIFALKWNKR----GNYILSAGVDKTTIIWDAASGQCEQQFSF 77 (131)
Q Consensus 8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~-----~~~~i~~~~~~~~----~~~~~s~~~d~~i~~~d~~~~~~~~~~~~ 77 (131)
...+++++.++.|++|++. ++.+..+.. |...+.+++|+|+ +.++++++.|+.|++||+.+++.+..+..
T Consensus 34 ~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 113 (366)
T 3k26_A 34 DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG 113 (366)
T ss_dssp SCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEES
T ss_pred CceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecC
Confidence 4556666667799999987 555555544 4577999999998 67999999999999999999999999999
Q ss_pred CCCCeEEEEEcC-CCc-EEEEeCCCcEEEEeCCCCeeeEEE---ecccceEEEE
Q psy3840 78 HSAPALDVDWQS-NTS-FASCSTDQHIHVCKLHSDKPVKSF---EGHTRVYYLA 126 (131)
Q Consensus 78 ~~~~v~~~~~~~-~~~-~~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~ 126 (131)
|...+.+++|+| ++. +++++.|+.|++||+++++.+..+ ..|...+..+
T Consensus 114 ~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 167 (366)
T 3k26_A 114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 167 (366)
T ss_dssp CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEE
T ss_pred CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEE
Confidence 999999999999 666 899999999999999999998888 5676665443
No 100
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.87 E-value=1.3e-20 Score=123.30 Aligned_cols=122 Identities=22% Similarity=0.363 Sum_probs=102.7
Q ss_pred cccC-CCCEEEEEeCCCeEEEEcCC-C---CceeecccccccEEEEEEcCCCC-EEEEEeCCCcEEEEECCC-cceeeee
Q psy3840 3 SSRN-NGSFLATGSYDGYARIWTSD-G---SLKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAAS-GQCEQQF 75 (131)
Q Consensus 3 ~~~~-~~~~l~~~~~d~~i~~~~~~-~---~~~~~~~~~~~~i~~~~~~~~~~-~~~s~~~d~~i~~~d~~~-~~~~~~~ 75 (131)
+|+| ++.++++++.|+.|++||+. + +.+..+..|...+.+++|+|++. .+++++.|+.|++||+++ ...+..+
T Consensus 238 ~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~ 317 (430)
T 2xyi_A 238 AWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 317 (430)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe
Confidence 3677 77899999999999999987 3 46667778999999999999876 788999999999999998 5667888
Q ss_pred ecCCCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCC--------------CeeeEEEecccceEE
Q psy3840 76 SFHSAPALDVDWQSNTS--FASCSTDQHIHVCKLHS--------------DKPVKSFEGHTRVYY 124 (131)
Q Consensus 76 ~~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~--------------~~~~~~~~~~~~~~~ 124 (131)
..|...+.+++|+|++. +++++.|+.|++||++. .+.+..+.+|...+.
T Consensus 318 ~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 382 (430)
T 2xyi_A 318 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS 382 (430)
T ss_dssp ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEE
T ss_pred ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCce
Confidence 88999999999999874 88999999999999986 255666666766443
No 101
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.87 E-value=1.1e-20 Score=123.72 Aligned_cols=120 Identities=21% Similarity=0.445 Sum_probs=105.4
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP 81 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (131)
+++++++++++|+.||.|++||.. ++....+.+|.+.|.+++| +++.+++++.||.|++||+.+++.+..+..|...
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~ 215 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA 215 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCc
Confidence 456689999999999999999987 7778888999999999998 7889999999999999999999999999999999
Q ss_pred eEEEEEcCCCcEEEEeCCCcEEEEeCCCCeee---EEEecccceEEE
Q psy3840 82 ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPV---KSFEGHTRVYYL 125 (131)
Q Consensus 82 v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~ 125 (131)
+.+++|++ +.+++++.|+.|++||+++++.+ ..+.+|...+..
T Consensus 216 v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 261 (435)
T 1p22_A 216 VLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 261 (435)
T ss_dssp EEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEE
T ss_pred EEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEE
Confidence 99999974 46999999999999999987655 556677766544
No 102
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.87 E-value=2.3e-21 Score=126.64 Aligned_cols=122 Identities=22% Similarity=0.328 Sum_probs=96.7
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCC-C-----------ceeeccccc------------ccEEEEEEcCCC--CEEEEEe
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDG-S-----------LKSTLGQHK------------GPIFALKWNKRG--NYILSAG 56 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~-~-----------~~~~~~~~~------------~~i~~~~~~~~~--~~~~s~~ 56 (131)
+|+|++++|++|+.||.|++|++.. + ....+.+|. +.|.+++|+|++ ..+++++
T Consensus 35 ~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s 114 (447)
T 3dw8_B 35 EFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLST 114 (447)
T ss_dssp EECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeC
Confidence 4899999999999999999999873 2 366778898 889999999988 7999999
Q ss_pred CCCcEEEEECCCccee---------------------------------------ee-eecCCCCeEEEEEcCCCc-EEE
Q psy3840 57 VDKTTIIWDAASGQCE---------------------------------------QQ-FSFHSAPALDVDWQSNTS-FAS 95 (131)
Q Consensus 57 ~d~~i~~~d~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~~~~~~-~~~ 95 (131)
.|+.|++||+.+++.. .. ...|...|.+++|+|++. +++
T Consensus 115 ~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 194 (447)
T 3dw8_B 115 NDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLS 194 (447)
T ss_dssp CSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEE
T ss_pred CCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEE
Confidence 9999999998764431 12 246888999999999987 677
Q ss_pred EeCCCcEEEEeCCC-CeeeEE-------EecccceEEE
Q psy3840 96 CSTDQHIHVCKLHS-DKPVKS-------FEGHTRVYYL 125 (131)
Q Consensus 96 ~~~d~~i~i~d~~~-~~~~~~-------~~~~~~~~~~ 125 (131)
+ .|+.|++||+++ ++.+.. +..|...+..
T Consensus 195 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 231 (447)
T 3dw8_B 195 A-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITA 231 (447)
T ss_dssp E-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEE
T ss_pred e-CCCeEEEEECCCCCceeeeeecccccccccCcceEE
Confidence 6 899999999994 444442 3456555443
No 103
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.87 E-value=6.2e-21 Score=127.62 Aligned_cols=118 Identities=10% Similarity=0.101 Sum_probs=94.9
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCCc--------eeec----ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGSL--------KSTL----GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ 70 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~--------~~~~----~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~ 70 (131)
+|||+|++|++|+.||+|++||+.++. +.++ .+|.+.|.+++|+|++ +++++.|+++++||+.++.
T Consensus 136 afSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 136 EWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp EECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSS
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCc
Confidence 589999999999999999999998442 3554 6678899999999999 8888999999999998877
Q ss_pred e---eeeee-cCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccceEE
Q psy3840 71 C---EQQFS-FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124 (131)
Q Consensus 71 ~---~~~~~-~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 124 (131)
. ...+. .|...|.+++|+ +..+++++ ++.|++||+.+++......+|...+.
T Consensus 214 ~~~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~ 269 (588)
T 2j04_A 214 HQPVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFH 269 (588)
T ss_dssp SCCCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCC
T ss_pred cccceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEE
Confidence 3 24553 677899999999 54577776 69999999998777444436766543
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.1e-20 Score=119.47 Aligned_cols=122 Identities=20% Similarity=0.369 Sum_probs=101.5
Q ss_pred ccCC--CCEEEEEeCCCeEEEEcCCC-C--ceeecccccccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCcc--eeee
Q psy3840 4 SRNN--GSFLATGSYDGYARIWTSDG-S--LKSTLGQHKGPIFALKWNKR--GNYILSAGVDKTTIIWDAASGQ--CEQQ 74 (131)
Q Consensus 4 ~~~~--~~~l~~~~~d~~i~~~~~~~-~--~~~~~~~~~~~i~~~~~~~~--~~~~~s~~~d~~i~~~d~~~~~--~~~~ 74 (131)
|+++ +++|++|+.|+.|++||+.. + .+..+..|...+.+++|+|+ +.++++++.|+.+++||++++. ....
T Consensus 63 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 142 (379)
T 3jrp_A 63 WAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 142 (379)
T ss_dssp ECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE
T ss_pred eCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE
Confidence 5555 89999999999999999873 3 66777789999999999998 9999999999999999998873 3345
Q ss_pred eecCCCCeEEEEEcC-------------CCc-EEEEeCCCcEEEEeCCCCe----eeEEEecccceEEE
Q psy3840 75 FSFHSAPALDVDWQS-------------NTS-FASCSTDQHIHVCKLHSDK----PVKSFEGHTRVYYL 125 (131)
Q Consensus 75 ~~~~~~~v~~~~~~~-------------~~~-~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~ 125 (131)
+..+...+.+++|+| ++. +++++.|+.|++||++++. .+..+.+|...+..
T Consensus 143 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~ 211 (379)
T 3jrp_A 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD 211 (379)
T ss_dssp EECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeE
Confidence 667888999999999 455 8999999999999998764 44566677766543
No 105
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.87 E-value=5.5e-21 Score=132.67 Aligned_cols=117 Identities=22% Similarity=0.295 Sum_probs=104.8
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc-ceeeeeecCCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQQFSFHSA 80 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~-~~~~~~~~~~~ 80 (131)
.|+|++++|++|+.||.|++||+. ++.+..+.+|.+.|.+++|+|+++.+++++.|+.+++||+.++ .....+..|..
T Consensus 62 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 141 (814)
T 3mkq_A 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH 141 (814)
T ss_dssp EEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS
T ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC
Confidence 478999999999999999999987 7778888899999999999999999999999999999999886 66677788889
Q ss_pred CeEEEEEcC-CCc-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840 81 PALDVDWQS-NTS-FASCSTDQHIHVCKLHSDKPVKSFEGH 119 (131)
Q Consensus 81 ~v~~~~~~~-~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~ 119 (131)
.+.+++|+| ++. +++++.|+.|++||+++++....+..+
T Consensus 142 ~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 182 (814)
T 3mkq_A 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182 (814)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC
T ss_pred cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC
Confidence 999999999 665 899999999999999888777666544
No 106
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.87 E-value=8.8e-21 Score=119.80 Aligned_cols=111 Identities=15% Similarity=0.291 Sum_probs=90.7
Q ss_pred CCEEEEEeCCCeEEEEcCCC----CceeecccccccEEEEEEcCCC----CEEEEEeCCCcEEEEECCCc---c-eeeee
Q psy3840 8 GSFLATGSYDGYARIWTSDG----SLKSTLGQHKGPIFALKWNKRG----NYILSAGVDKTTIIWDAASG---Q-CEQQF 75 (131)
Q Consensus 8 ~~~l~~~~~d~~i~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~----~~~~s~~~d~~i~~~d~~~~---~-~~~~~ 75 (131)
+++|++|+.|+.|++||+.. +.+..+.+|.+.|.+++|+|++ ..+++++.|+++++|++++. + ....+
T Consensus 179 ~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~ 258 (316)
T 3bg1_A 179 IKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL 258 (316)
T ss_dssp CCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE
T ss_pred cceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhh
Confidence 57899999999999999863 3566788999999999999986 88999999999999998763 1 22345
Q ss_pred ecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCC-C--eeeEEEec
Q psy3840 76 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHS-D--KPVKSFEG 118 (131)
Q Consensus 76 ~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~-~--~~~~~~~~ 118 (131)
..+...+.+++|+|++. |++++.|+.|++|+... + .++..+..
T Consensus 259 ~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~~~~~~~~ 305 (316)
T 3bg1_A 259 HKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNK 305 (316)
T ss_dssp EECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEEEEEECC-
T ss_pred hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEEEeeeccC
Confidence 56778999999999987 89999999999999863 3 44555543
No 107
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.86 E-value=2e-21 Score=123.00 Aligned_cols=114 Identities=15% Similarity=0.097 Sum_probs=97.7
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCCc----eeecccccccEEEEEEcCCCC-EEEEEeCCCcEEEEEC-CCcceeeeee
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGSL----KSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDA-ASGQCEQQFS 76 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~-~~~s~~~d~~i~~~d~-~~~~~~~~~~ 76 (131)
+|+|++++|++++.|+.|++|++.... ...+..|...|.+++|+|+++ ++++++.|+.+++||+ .+++. ..+.
T Consensus 18 ~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~ 96 (342)
T 1yfq_A 18 KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALT 96 (342)
T ss_dssp EEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECB
T ss_pred EEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-Eecc
Confidence 478999999999999999999987333 566678999999999999999 9999999999999999 77754 6677
Q ss_pred c--CCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCC---------CeeeEEEe
Q psy3840 77 F--HSAPALDVDWQSNTSFASCSTDQHIHVCKLHS---------DKPVKSFE 117 (131)
Q Consensus 77 ~--~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~---------~~~~~~~~ 117 (131)
. |...+.+++|+|...+++++.|+.|++||+++ ++++..+.
T Consensus 97 ~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 148 (342)
T 1yfq_A 97 NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK 148 (342)
T ss_dssp SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred ccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe
Confidence 7 88999999999933389999999999999987 66665555
No 108
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.86 E-value=1.3e-20 Score=119.50 Aligned_cols=115 Identities=11% Similarity=0.033 Sum_probs=88.3
Q ss_pred CCCEEEEEeCCCeEEEEcCC-CCceeeccccc---ccEEEEEEcCCCCEE------------EEEeCCCcEEEEECCCcc
Q psy3840 7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHK---GPIFALKWNKRGNYI------------LSAGVDKTTIIWDAASGQ 70 (131)
Q Consensus 7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~---~~i~~~~~~~~~~~~------------~s~~~d~~i~~~d~~~~~ 70 (131)
++..|++|+.|++|++||+. ++.+.++.+|. ..+.+++|+|++..+ ++|+.|+++++||..+++
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk 271 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL 271 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence 67889999999999999998 88888887654 367778999999876 567889999999999998
Q ss_pred eeeeee-----cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceE
Q psy3840 71 CEQQFS-----FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVY 123 (131)
Q Consensus 71 ~~~~~~-----~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 123 (131)
.+..+. +|...+.+.+++ +. +++++.|++|+|||+++++++.++.+|...+
T Consensus 272 ~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~v 328 (356)
T 2w18_A 272 SVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQH 328 (356)
T ss_dssp EEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CC
T ss_pred EEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCe
Confidence 776542 444444444443 44 7889999999999999999999999886643
No 109
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.86 E-value=3e-20 Score=133.83 Aligned_cols=115 Identities=22% Similarity=0.385 Sum_probs=106.0
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNK--RGNYILSAGVDKTTIIWDAASGQCEQQFSFHS 79 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~--~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (131)
+|+|+++++++++.|+.|++||+. ++.+..+.+|...+.+++|+| ++..+++++.|+.+++||+++++.+..+.+|.
T Consensus 664 ~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~ 743 (1249)
T 3sfz_A 664 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT 743 (1249)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS
T ss_pred EEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC
Confidence 479999999999999999999987 788888899999999999999 56689999999999999999999999999999
Q ss_pred CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840 80 APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~ 117 (131)
..+.+++|+|++. +++++.|+.|++||+++++....+.
T Consensus 744 ~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 782 (1249)
T 3sfz_A 744 NSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSIN 782 (1249)
T ss_dssp SCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEE
T ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceec
Confidence 9999999999987 8999999999999999988776654
No 110
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.86 E-value=8.8e-20 Score=115.48 Aligned_cols=121 Identities=12% Similarity=0.085 Sum_probs=102.5
Q ss_pred ccCCCCEEEEEeCCCeEEEEcCCC-C---ceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCc------cee
Q psy3840 4 SRNNGSFLATGSYDGYARIWTSDG-S---LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASG------QCE 72 (131)
Q Consensus 4 ~~~~~~~l~~~~~d~~i~~~~~~~-~---~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~------~~~ 72 (131)
|++++ +++++.++.|++||+.. . .......|...+.+++|+| +++++++++.|+.+++|+++.. +..
T Consensus 158 ~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 235 (342)
T 1yfq_A 158 TNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235 (342)
T ss_dssp ECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred ecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence 45544 99999999999999875 2 2234456788999999999 9999999999999999999876 677
Q ss_pred eeeecCCC---------CeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecc-cceEEEE
Q psy3840 73 QQFSFHSA---------PALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH-TRVYYLA 126 (131)
Q Consensus 73 ~~~~~~~~---------~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~ 126 (131)
..+..+.. .+.+++|+|++. +++++.|+.|++||+++++.+..+..| ...+..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~ 300 (342)
T 1yfq_A 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKI 300 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEE
T ss_pred eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEe
Confidence 77777654 899999999977 999999999999999999999999988 7776554
No 111
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.86 E-value=7.3e-20 Score=116.27 Aligned_cols=115 Identities=17% Similarity=0.232 Sum_probs=94.6
Q ss_pred cccCC---CCEEEEEeCCCeEEEEcCC-CC-ceeecccccccEEEEE------EcCCCCEEEEEeCCCcEEEEECCCcc-
Q psy3840 3 SSRNN---GSFLATGSYDGYARIWTSD-GS-LKSTLGQHKGPIFALK------WNKRGNYILSAGVDKTTIIWDAASGQ- 70 (131)
Q Consensus 3 ~~~~~---~~~l~~~~~d~~i~~~~~~-~~-~~~~~~~~~~~i~~~~------~~~~~~~~~s~~~d~~i~~~d~~~~~- 70 (131)
+|+|+ ++++++|+.|+.|++||+. ++ .+..+.+|...|.++. |+|+++.+++++.|+.+++||+++++
T Consensus 72 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~ 151 (357)
T 3i2n_A 72 TFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD 151 (357)
T ss_dssp ECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS
T ss_pred EEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC
Confidence 46777 7999999999999999987 44 6788889999999995 46889999999999999999999876
Q ss_pred eeeeeecCCC----CeEEEE----EcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840 71 CEQQFSFHSA----PALDVD----WQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 71 ~~~~~~~~~~----~v~~~~----~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~ 117 (131)
.+..+..+.. .+.++. |+|++. +++++.|+.|++||+++++......
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 207 (357)
T 3i2n_A 152 PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN 207 (357)
T ss_dssp CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC
Confidence 5666654433 788888 567776 8899999999999999988755543
No 112
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.86 E-value=6.3e-20 Score=118.29 Aligned_cols=115 Identities=24% Similarity=0.281 Sum_probs=89.5
Q ss_pred cccCCCC-EEEEEeCCCeEEEEcCCC--Cceeec---------------ccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy3840 3 SSRNNGS-FLATGSYDGYARIWTSDG--SLKSTL---------------GQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64 (131)
Q Consensus 3 ~~~~~~~-~l~~~~~d~~i~~~~~~~--~~~~~~---------------~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~ 64 (131)
+|+|+++ ++++|+.||.|++||+.. .....+ ..|...+.+++|+|+++++++++.|+.+++|
T Consensus 193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 4788888 589999999999999862 122222 5688999999999999999999999999999
Q ss_pred ECCCcc-----------------------------------------------eeeeeecCCCCeEEEEEcCCCc-EEEE
Q psy3840 65 DAASGQ-----------------------------------------------CEQQFSFHSAPALDVDWQSNTS-FASC 96 (131)
Q Consensus 65 d~~~~~-----------------------------------------------~~~~~~~~~~~v~~~~~~~~~~-~~~~ 96 (131)
|+++++ .+..+..|...|.+++|+|++. ++++
T Consensus 273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 352 (408)
T 4a11_B 273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG 352 (408)
T ss_dssp ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEE
Confidence 987643 2334456778999999999977 8999
Q ss_pred eCCCcEEEEeCCCCeeeEEEe
Q psy3840 97 STDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 97 ~~d~~i~i~d~~~~~~~~~~~ 117 (131)
+.|+.|++||+++++++....
T Consensus 353 ~~dg~i~iw~~~~~~~~~~~~ 373 (408)
T 4a11_B 353 SRDCNILAWVPSLYEPVPDDD 373 (408)
T ss_dssp ETTSCEEEEEECC--------
T ss_pred CCCCeEEEEeCCCCCccCCCC
Confidence 999999999999988776543
No 113
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.85 E-value=1.1e-19 Score=117.08 Aligned_cols=123 Identities=18% Similarity=0.333 Sum_probs=103.6
Q ss_pred cccC-CCCEEEEEeCCCeEEEEcCC-CCceeec-------------ccccccEEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q psy3840 3 SSRN-NGSFLATGSYDGYARIWTSD-GSLKSTL-------------GQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDA 66 (131)
Q Consensus 3 ~~~~-~~~~l~~~~~d~~i~~~~~~-~~~~~~~-------------~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~ 66 (131)
+|+| ++++|++|+.||.|++||+. +.....+ .+|...|.+++|+| ++.++++++.|+.+++||+
T Consensus 50 ~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~ 129 (408)
T 4a11_B 50 DIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDT 129 (408)
T ss_dssp EECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEET
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeC
Confidence 4788 99999999999999999987 3322222 25899999999999 7889999999999999999
Q ss_pred CCcceeeeeecCCCCeEEEEEcCC---C-cEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840 67 ASGQCEQQFSFHSAPALDVDWQSN---T-SFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA 126 (131)
Q Consensus 67 ~~~~~~~~~~~~~~~v~~~~~~~~---~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 126 (131)
.+++....+. +...+.++.+.|. + .+++++.++.|++||+++++.+..+..|...+..+
T Consensus 130 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~ 192 (408)
T 4a11_B 130 NTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV 192 (408)
T ss_dssp TTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred CCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence 9998877776 5678999999884 3 38899999999999999999999998887766543
No 114
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.85 E-value=5.9e-20 Score=119.84 Aligned_cols=115 Identities=18% Similarity=0.315 Sum_probs=90.7
Q ss_pred ccCC-CCEEEEE--eCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEe--CCCcEEEEECCCcceeeeeec
Q psy3840 4 SRNN-GSFLATG--SYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAG--VDKTTIIWDAASGQCEQQFSF 77 (131)
Q Consensus 4 ~~~~-~~~l~~~--~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~--~d~~i~~~d~~~~~~~~~~~~ 77 (131)
|+|. +..++++ +.|++|++||+. ++....+. +...+.++.|+|++..+++++ .|+.|++||+++++++..+.+
T Consensus 284 ~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g 362 (420)
T 4gga_A 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG 362 (420)
T ss_dssp ECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC
T ss_pred eCCCcccEEEEEeecCCCEEEEEeCCccccceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC
Confidence 4554 4555553 579999999987 55555554 445788999999999888765 689999999999999999999
Q ss_pred CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840 78 HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH 119 (131)
Q Consensus 78 ~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~ 119 (131)
|...|++++|+|++. |++++.|+.|++||+.+..+....+.+
T Consensus 363 H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~ 405 (420)
T 4gga_A 363 HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRERE 405 (420)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC------
T ss_pred CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhc
Confidence 999999999999987 999999999999999877665555443
No 115
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.85 E-value=2.4e-19 Score=116.94 Aligned_cols=121 Identities=24% Similarity=0.402 Sum_probs=100.3
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeec--ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTL--GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS 79 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~--~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (131)
+|++ ++.|++|. |++|++||.. ++....+ .+|...|++++|+|+++++++|+.|+.|++||+.+++.+..+.+|.
T Consensus 112 ~wS~-~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~ 189 (420)
T 4gga_A 112 DWSS-GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS 189 (420)
T ss_dssp EECT-TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred EECC-CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCC
Confidence 4665 46888876 8999999987 5555544 4677889999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCcEEEEeCCCcEEEEeCCCC-eeeEEEecccceEEEE
Q psy3840 80 APALDVDWQSNTSFASCSTDQHIHVCKLHSD-KPVKSFEGHTRVYYLA 126 (131)
Q Consensus 80 ~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~ 126 (131)
..+.++.+++ ..+++++.|+.+++||.+.. ..+..+.+|...+..+
T Consensus 190 ~~v~~~s~~~-~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~ 236 (420)
T 4gga_A 190 ARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGL 236 (420)
T ss_dssp SCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred CceEEEeeCC-CEEEEEeCCCceeEeeecccceeeEEecccccceeee
Confidence 9999988854 24899999999999999875 5566777777766543
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=7.1e-20 Score=127.05 Aligned_cols=123 Identities=20% Similarity=0.364 Sum_probs=103.5
Q ss_pred ccCC--CCEEEEEeCCCeEEEEcCCCC---ceeecccccccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCcc--eeee
Q psy3840 4 SRNN--GSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWNKR--GNYILSAGVDKTTIIWDAASGQ--CEQQ 74 (131)
Q Consensus 4 ~~~~--~~~l~~~~~d~~i~~~~~~~~---~~~~~~~~~~~i~~~~~~~~--~~~~~s~~~d~~i~~~d~~~~~--~~~~ 74 (131)
|+++ ++++++|+.||.|++||+... .+..+.+|...|.+++|+|+ +..+++++.||.+++||++++. ....
T Consensus 61 ~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~ 140 (753)
T 3jro_A 61 WAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140 (753)
T ss_dssp ECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred ecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE
Confidence 5666 999999999999999998743 56777889999999999998 9999999999999999998873 3445
Q ss_pred eecCCCCeEEEEEcC-------------CCc-EEEEeCCCcEEEEeCCCC----eeeEEEecccceEEEE
Q psy3840 75 FSFHSAPALDVDWQS-------------NTS-FASCSTDQHIHVCKLHSD----KPVKSFEGHTRVYYLA 126 (131)
Q Consensus 75 ~~~~~~~v~~~~~~~-------------~~~-~~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~ 126 (131)
+..+...+.++.|+| ++. +++++.|+.|++||++++ ..+..+.+|...+..+
T Consensus 141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l 210 (753)
T 3jro_A 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 210 (753)
T ss_dssp EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEE
Confidence 667888999999999 344 999999999999999877 5566777787766443
No 117
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.85 E-value=1.8e-19 Score=117.93 Aligned_cols=119 Identities=25% Similarity=0.412 Sum_probs=103.0
Q ss_pred cCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee---eeeecCCC
Q psy3840 5 RNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE---QQFSFHSA 80 (131)
Q Consensus 5 ~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~---~~~~~~~~ 80 (131)
..+++.+++|+.||.|++||+. ++.+..+.+|...|.+++|+ +..+++++.|+.+++||+++++.. ..+.+|..
T Consensus 180 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 257 (435)
T 1p22_A 180 QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 257 (435)
T ss_dssp ECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS
T ss_pred EECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC
Confidence 4478999999999999999987 77888889999999999996 459999999999999999987665 56677888
Q ss_pred CeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840 81 PALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA 126 (131)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 126 (131)
.+.++++. ...+++++.|+.|++||+++++.+..+.+|...+..+
T Consensus 258 ~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 302 (435)
T 1p22_A 258 AVNVVDFD-DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL 302 (435)
T ss_dssp CEEEEEEE-TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred cEEEEEeC-CCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEE
Confidence 99999992 2348999999999999999999999999888776543
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.84 E-value=1e-20 Score=122.65 Aligned_cols=114 Identities=13% Similarity=0.120 Sum_probs=83.4
Q ss_pred CCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCcceeeee---------
Q psy3840 7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQCEQQF--------- 75 (131)
Q Consensus 7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~~~s~~~d~~i~~~d~~~~~~~~~~--------- 75 (131)
++++|++|+.|++|++||+. +..+..+..|..++.+++|+|++ .++++++.|++|++||+++++.....
T Consensus 155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP 234 (393)
T ss_dssp EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence 78999999999999999986 66777788899999999999976 58999999999999999876543221
Q ss_pred ----------------ecCCCCeEEEEEc-CCCc-EEEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840 76 ----------------SFHSAPALDVDWQ-SNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 120 (131)
Q Consensus 76 ----------------~~~~~~v~~~~~~-~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 120 (131)
.++...+.++.|. |++. +++++.|+.+++||+.+++....+..|.
T Consensus 235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~ 297 (393)
T 4gq1_A 235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDST 297 (393)
T ss_dssp CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------
T ss_pred eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeec
Confidence 2355678888886 6766 8999999999999998877666555443
No 119
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.84 E-value=1.3e-19 Score=113.56 Aligned_cols=100 Identities=14% Similarity=0.272 Sum_probs=87.1
Q ss_pred EEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEe--CCCcEEEEECCCcceeeeeecCCCCeEEEEEcC
Q psy3840 12 ATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG--VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 89 (131)
Q Consensus 12 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 89 (131)
++++.++.|++||...........+...+..+.|+|++..+++++ .|+.|++||+++++.+..+.+|...|++++|+|
T Consensus 215 ~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp 294 (318)
T 4ggc_A 215 GGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP 294 (318)
T ss_dssp EECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred EecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence 456778999999988555555566778899999999988877654 699999999999999999999999999999999
Q ss_pred CCc-EEEEeCCCcEEEEeCCCCe
Q psy3840 90 NTS-FASCSTDQHIHVCKLHSDK 111 (131)
Q Consensus 90 ~~~-~~~~~~d~~i~i~d~~~~~ 111 (131)
++. |++++.|+.|++||+.+..
T Consensus 295 dg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 295 DGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp TSSCEEEEETTTEEEEECCSCCC
T ss_pred CCCEEEEEecCCeEEEEECCCCC
Confidence 987 9999999999999997654
No 120
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.84 E-value=1e-18 Score=109.50 Aligned_cols=120 Identities=23% Similarity=0.390 Sum_probs=97.4
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeec--ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTL--GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS 79 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~--~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (131)
+||+++ +|++|. |++|++||+. ++.+..+ .+|...|.+++|+|+++++++|+.|+++++||+++++.+..+..|.
T Consensus 32 ~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~ 109 (318)
T 4ggc_A 32 DWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS 109 (318)
T ss_dssp EECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred EECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCcc
Confidence 467764 777765 8999999987 6666554 4677889999999999999999999999999999999999999988
Q ss_pred CCeEEEEEcCCCcEEEEeCCCcEEEEeCCCC-eeeEEEecccceEEE
Q psy3840 80 APALDVDWQSNTSFASCSTDQHIHVCKLHSD-KPVKSFEGHTRVYYL 125 (131)
Q Consensus 80 ~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~ 125 (131)
..+.++.+.+ ..+++++.++.+.+|+.... ..+..+.+|...+..
T Consensus 110 ~~~~~~~~~~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (318)
T 4ggc_A 110 ARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG 155 (318)
T ss_dssp SCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred ceEEEeecCC-CEEEEEecCCceEeeecCCCceeEEEEcCccCceEE
Confidence 8887766543 24889999999999998876 455666777665544
No 121
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.84 E-value=4.7e-20 Score=117.01 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=78.7
Q ss_pred cccCCCCEE------------EEEeCCCeEEEEcCC-CCceeec-----ccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy3840 3 SSRNNGSFL------------ATGSYDGYARIWTSD-GSLKSTL-----GQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64 (131)
Q Consensus 3 ~~~~~~~~l------------~~~~~d~~i~~~~~~-~~~~~~~-----~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~ 64 (131)
+|+|++.++ ++|+.|++|++||.. ++.+..+ .+|.+.+.+..+ ++..+++++.|++|++|
T Consensus 233 afSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIW 310 (356)
T 2w18_A 233 AYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIW 310 (356)
T ss_dssp EEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEE
T ss_pred EECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEE
Confidence 478888876 567889999999987 4444333 356655444443 37889999999999999
Q ss_pred ECCCcceeeeeecCCCCeE-EEEEcCCCc-EEEEeCCCcEEEEeC
Q psy3840 65 DAASGQCEQQFSFHSAPAL-DVDWQSNTS-FASCSTDQHIHVCKL 107 (131)
Q Consensus 65 d~~~~~~~~~~~~~~~~v~-~~~~~~~~~-~~~~~~d~~i~i~d~ 107 (131)
|+.+++++.++.+|...+. .++|+|+++ +++|+.|++|+|||+
T Consensus 311 Dl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 311 DLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999999988877655 589999987 899999999999995
No 122
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.83 E-value=3.3e-19 Score=116.87 Aligned_cols=114 Identities=19% Similarity=0.399 Sum_probs=76.4
Q ss_pred CCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEE
Q psy3840 7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV 85 (131)
Q Consensus 7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~ 85 (131)
+++.+++|+.|+.|++||+. ++.+..+.+|...+.++.+ ++..+++++.|+.+++||+++++.+..+..|...+.++
T Consensus 208 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 285 (445)
T 2ovr_B 208 HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL 285 (445)
T ss_dssp ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE
T ss_pred cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEE
Confidence 35667777777777777765 5555666667777777766 56667777777777777777766666666666677777
Q ss_pred EEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccceE
Q psy3840 86 DWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVY 123 (131)
Q Consensus 86 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 123 (131)
.| ....+++++.|+.|++||+++++++..+.+|...+
T Consensus 286 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v 322 (445)
T 2ovr_B 286 QF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT 322 (445)
T ss_dssp EE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCE
T ss_pred EE-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccE
Confidence 77 22236777777777777777777776666665544
No 123
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.83 E-value=1.5e-19 Score=115.79 Aligned_cols=108 Identities=19% Similarity=0.314 Sum_probs=88.3
Q ss_pred cccCCCCEEEEEeCCCe-EEEEcCC-CCceeecc-c-ccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee--eee-
Q psy3840 3 SSRNNGSFLATGSYDGY-ARIWTSD-GSLKSTLG-Q-HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE--QQF- 75 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~-i~~~~~~-~~~~~~~~-~-~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~--~~~- 75 (131)
+|+|++++|++|+.|++ |++||+. ++.+..+. + |.+.|.+++|+|+++++++++.|+++++||++.+... ..+
T Consensus 202 ~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~ 281 (355)
T 3vu4_A 202 RLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALK 281 (355)
T ss_dssp EECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETT
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccc
Confidence 47999999999999998 9999987 77788887 5 9999999999999999999999999999999764311 110
Q ss_pred -------------------e-cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC
Q psy3840 76 -------------------S-FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSD 110 (131)
Q Consensus 76 -------------------~-~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~ 110 (131)
. ........++|++++. +++++.||.+++|++..+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 282 GWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp TTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 0 0112236789999986 899999999999998653
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.81 E-value=1.7e-18 Score=112.91 Aligned_cols=123 Identities=8% Similarity=-0.006 Sum_probs=102.2
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCcee-----ecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKS-----TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS 76 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~-----~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~ 76 (131)
+|+|++.++++++.++.|++||+. ++... .+.+|.+.+.+++|+|++..+++++.|+.+++||+++++.+..+.
T Consensus 129 ~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~ 208 (433)
T 3bws_A 129 RFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD 208 (433)
T ss_dssp EESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE
T ss_pred EEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc
Confidence 467877778888888999999987 55544 345788899999999999999999999999999999999888888
Q ss_pred cCCCCeEEEEEcCCCc-E-EEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840 77 FHSAPALDVDWQSNTS-F-ASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL 125 (131)
Q Consensus 77 ~~~~~v~~~~~~~~~~-~-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 125 (131)
.+...+.+++|+|++. + +++..++.|++||+++++.+..+..+......
T Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 259 (433)
T 3bws_A 209 LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGL 259 (433)
T ss_dssp CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEE
T ss_pred CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEE
Confidence 8888999999999976 5 45557899999999999888877665544333
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.78 E-value=7.1e-17 Score=104.00 Aligned_cols=122 Identities=9% Similarity=0.081 Sum_probs=97.5
Q ss_pred cccCCCCEE-EEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEE-EeCCCcEEEEECCCcceeeeeecCC
Q psy3840 3 SSRNNGSFL-ATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILS-AGVDKTTIIWDAASGQCEQQFSFHS 79 (131)
Q Consensus 3 ~~~~~~~~l-~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s-~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (131)
+|+|+++.+ ++++.|+.|++||+. ++.+..+..+ ..+.+++|+|+++.++. +..++.+++||+.+++.+..+..+
T Consensus 38 ~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~- 115 (391)
T 1l0q_A 38 VISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG- 115 (391)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-
T ss_pred EECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-
Confidence 478999987 566689999999987 5555555544 48999999999997755 456799999999999888777654
Q ss_pred CCeEEEEEcCCCc-E-EEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840 80 APALDVDWQSNTS-F-ASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA 126 (131)
Q Consensus 80 ~~v~~~~~~~~~~-~-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 126 (131)
..+.+++|+|+++ + ++++.++.|++||+++++.+..+..+.......
T Consensus 116 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 164 (391)
T 1l0q_A 116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIA 164 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEE
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEE
Confidence 5789999999987 5 678889999999999999888887665554333
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.77 E-value=8.5e-17 Score=103.63 Aligned_cols=117 Identities=10% Similarity=0.057 Sum_probs=94.3
Q ss_pred CEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCcceeeeeecCCCCeEEEE
Q psy3840 9 SFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYI-LSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD 86 (131)
Q Consensus 9 ~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~-~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~ 86 (131)
..+++++.|+.|++||+. ++.+..+..| ..+.+++|+|+++.+ ++++.++.+++||+.+++.+..+..+. .+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 467888889999999987 5666666655 458999999999876 677789999999999999888877654 899999
Q ss_pred EcCCCc-E-EEEeCCCcEEEEeCCCCeeeEEEecccceEEEEe
Q psy3840 87 WQSNTS-F-ASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLAM 127 (131)
Q Consensus 87 ~~~~~~-~-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 127 (131)
|+|++. + +++..++.|++||+++++.+..+..+.......+
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~ 123 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL 123 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEE
Confidence 999987 5 4555679999999999998888876665544433
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.76 E-value=8.2e-17 Score=104.91 Aligned_cols=114 Identities=5% Similarity=0.018 Sum_probs=95.4
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEE-EeCCCcEEEEECCCcceeeeeecCCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILS-AGVDKTTIIWDAASGQCEQQFSFHSA 80 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s-~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (131)
+|++++.++++++.|+.|++||+. ++.+..+..|...+.+++|+|+++.+++ ++.++.+++||+++++.+..+..+ .
T Consensus 176 ~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~ 254 (433)
T 3bws_A 176 SIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-G 254 (433)
T ss_dssp EEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-S
T ss_pred EEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-C
Confidence 357889999999999999999987 5677777788889999999999998754 447999999999999887777653 4
Q ss_pred CeEEEEEcCCCc-EEEEe--------CCCcEEEEeCCCCeeeEEEe
Q psy3840 81 PALDVDWQSNTS-FASCS--------TDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 81 ~v~~~~~~~~~~-~~~~~--------~d~~i~i~d~~~~~~~~~~~ 117 (131)
.+..++|+|++. +++++ .|+.|++||+++++.+..+.
T Consensus 255 ~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~ 300 (433)
T 3bws_A 255 LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG 300 (433)
T ss_dssp EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE
T ss_pred CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc
Confidence 689999999986 66666 47899999999988776653
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.74 E-value=5.2e-16 Score=101.41 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=87.4
Q ss_pred cccCCCCEEEEEeCCC---eEEEEcCCCCceeecccccccEEEEEEcCCCCEEE-EEeCCCc--EEEEECCCcceeeeee
Q psy3840 3 SSRNNGSFLATGSYDG---YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKT--TIIWDAASGQCEQQFS 76 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~---~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-s~~~d~~--i~~~d~~~~~~~~~~~ 76 (131)
+|+|+|+.|++++.++ .|++||+.......+..|.+.+.+++|+|+++.++ +++.++. |++||+.+++. ..+.
T Consensus 185 ~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~ 263 (415)
T 2hqs_A 185 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVT 263 (415)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECC
T ss_pred EEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCc
Confidence 5899999999998875 89999998555556777888999999999999877 6666554 99999988775 4566
Q ss_pred cCCCCeEEEEEcCCCc-EEEEeC-CC--cEEEEeCCCCee
Q psy3840 77 FHSAPALDVDWQSNTS-FASCST-DQ--HIHVCKLHSDKP 112 (131)
Q Consensus 77 ~~~~~v~~~~~~~~~~-~~~~~~-d~--~i~i~d~~~~~~ 112 (131)
.+...+.+++|+|+++ ++.++. ++ .|++||+.+++.
T Consensus 264 ~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~ 303 (415)
T 2hqs_A 264 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP 303 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE
Confidence 6777899999999987 666654 44 688889887754
No 129
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.73 E-value=8.7e-17 Score=105.68 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=83.4
Q ss_pred cccCC-CCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC--
Q psy3840 3 SSRNN-GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH-- 78 (131)
Q Consensus 3 ~~~~~-~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~-- 78 (131)
+|+|+ +++|++++.||+|++||+. +..+....+|...+.+++|+|+++++++++.|+.+++||++ ++....+..+
T Consensus 156 ~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~ 234 (434)
T 2oit_A 156 KWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPF 234 (434)
T ss_dssp EECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTT
T ss_pred EECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcc
Confidence 47887 8899999999999999987 44444556788899999999999999999999999999998 5444444332
Q ss_pred -----CCCeEEEEEcCCCcEE--EEeCCC------cEEEEeCCCC
Q psy3840 79 -----SAPALDVDWQSNTSFA--SCSTDQ------HIHVCKLHSD 110 (131)
Q Consensus 79 -----~~~v~~~~~~~~~~~~--~~~~d~------~i~i~d~~~~ 110 (131)
...+.++.|++++.++ ....+| .+++|++++.
T Consensus 235 ~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 235 YESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 2268899999987743 233332 3899999864
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.71 E-value=2.5e-15 Score=98.23 Aligned_cols=112 Identities=15% Similarity=0.164 Sum_probs=89.3
Q ss_pred CCEEEEEeCC------CeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCC---cEEEEECCCcceeeeeecC
Q psy3840 8 GSFLATGSYD------GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK---TTIIWDAASGQCEQQFSFH 78 (131)
Q Consensus 8 ~~~l~~~~~d------~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~---~i~~~d~~~~~~~~~~~~~ 78 (131)
+..++.++.+ +.|++||..+.....+..|...+.+++|+|+++.+++++.++ .+++||+.+++.. .+..+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~ 221 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASF 221 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecC
Confidence 5666666554 789999999877888888999999999999999999998875 8999999988765 45556
Q ss_pred CCCeEEEEEcCCCc-EE-EEeCCC--cEEEEeCCCCeeeEEEecccc
Q psy3840 79 SAPALDVDWQSNTS-FA-SCSTDQ--HIHVCKLHSDKPVKSFEGHTR 121 (131)
Q Consensus 79 ~~~v~~~~~~~~~~-~~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~ 121 (131)
...+.+++|+|+++ ++ +++.++ .|++||+++++. ..+..|..
T Consensus 222 ~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~ 267 (415)
T 2hqs_A 222 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRS 267 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSS
T ss_pred CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCC
Confidence 77899999999987 65 555555 499999988765 44444543
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.68 E-value=3.9e-15 Score=100.30 Aligned_cols=114 Identities=11% Similarity=0.086 Sum_probs=95.8
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEEC--CCcceeeeeecCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA--ASGQCEQQFSFHS 79 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~--~~~~~~~~~~~~~ 79 (131)
.++|++..+++++.+++|.+||.. ++.+.++..+.. +..++|+|+++++++++.++.|++||+ .+++.+..+.. .
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-G 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-C
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-C
Confidence 477888889999999999999987 677777763333 889999999999999999999999999 78888887774 4
Q ss_pred CCeEEEEEcC----CCc-EEEEe-CCCcEEEEeCCCCeeeEEEec
Q psy3840 80 APALDVDWQS----NTS-FASCS-TDQHIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 80 ~~v~~~~~~~----~~~-~~~~~-~d~~i~i~d~~~~~~~~~~~~ 118 (131)
..+..++|+| +++ +++++ .++.|.+||..+++++..+..
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~ 266 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVST 266 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEEC
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecc
Confidence 5678999999 987 66665 589999999999998888764
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.64 E-value=8.1e-15 Score=101.31 Aligned_cols=113 Identities=12% Similarity=0.122 Sum_probs=88.1
Q ss_pred cccCCCCEEEEEeC-CC-----eEEEEcCC-CCceeeccccc------------------------ccEEEEEEcCCCCE
Q psy3840 3 SSRNNGSFLATGSY-DG-----YARIWTSD-GSLKSTLGQHK------------------------GPIFALKWNKRGNY 51 (131)
Q Consensus 3 ~~~~~~~~l~~~~~-d~-----~i~~~~~~-~~~~~~~~~~~------------------------~~i~~~~~~~~~~~ 51 (131)
+|+|||++|++++. |+ .|.+||+. ++....+..+. ..+..++|+|+|++
T Consensus 43 ~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~ 122 (741)
T 2ecf_A 43 KVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQR 122 (741)
T ss_dssp EECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSE
T ss_pred eEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCE
Confidence 58999999999998 88 89999987 44444443332 23788999999999
Q ss_pred EEEEeCCCcEEEEECCCcc--eeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840 52 ILSAGVDKTTIIWDAASGQ--CEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 52 ~~s~~~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~ 117 (131)
+++++. +.+++||+.++. ....+..+...+..++|+|+++ ++.++ ++.|++||+.+++......
T Consensus 123 l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~ 189 (741)
T 2ecf_A 123 LLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTA 189 (741)
T ss_dssp EEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCC
T ss_pred EEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEecc
Confidence 998886 899999998873 3455666677899999999998 55554 5699999999887655443
No 133
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.62 E-value=2.8e-14 Score=102.14 Aligned_cols=117 Identities=16% Similarity=0.174 Sum_probs=95.6
Q ss_pred cccCCCCEEEEEeCCCeEE-EEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840 3 SSRNNGSFLATGSYDGYAR-IWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP 81 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (131)
+|+ +++.++.++.+..+. +|+..+.....+.+|...+..++|+|+++.+++++.++.+++||+.+++.......+...
T Consensus 344 ~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~ 422 (1045)
T 1k32_A 344 GGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM 422 (1045)
T ss_dssp CSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC
T ss_pred eEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCC
Confidence 467 889999988887888 889886555555677788999999999999999999999999999999887777677788
Q ss_pred eEEEEEcCCCc-EEEEeCC----------CcEEEEeCCCCeeeEEEecccc
Q psy3840 82 ALDVDWQSNTS-FASCSTD----------QHIHVCKLHSDKPVKSFEGHTR 121 (131)
Q Consensus 82 v~~~~~~~~~~-~~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~ 121 (131)
+..++|+|+++ ++.++.+ +.|++||+.+++ +..+..|..
T Consensus 423 v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~ 472 (1045)
T 1k32_A 423 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENS 472 (1045)
T ss_dssp CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSS
T ss_pred ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCc
Confidence 89999999988 6666543 389999999877 455544443
No 134
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.62 E-value=1.6e-14 Score=89.21 Aligned_cols=110 Identities=13% Similarity=0.175 Sum_probs=86.6
Q ss_pred cccCCCCEEE-EEeCCCeEEEEcC--CCCceeecccccccEEEEEEcCCCCEEEEEe-CCCcEEEEECC-Ccceeeeeec
Q psy3840 3 SSRNNGSFLA-TGSYDGYARIWTS--DGSLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAA-SGQCEQQFSF 77 (131)
Q Consensus 3 ~~~~~~~~l~-~~~~d~~i~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~-~d~~i~~~d~~-~~~~~~~~~~ 77 (131)
.|+|+++.++ ++..++.+++|++ .+.....+..+...+.++.|+|+++.++.++ .++.+++|++. .+.....+..
T Consensus 135 ~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 214 (297)
T 2ojh_A 135 GWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD 214 (297)
T ss_dssp EECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC
T ss_pred EECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec
Confidence 5899999887 6778999999985 4555666777888899999999999877665 58899999886 4555666666
Q ss_pred CCCCeEEEEEcCCCc-EEEEeCC-----------CcEEEEeCCCCee
Q psy3840 78 HSAPALDVDWQSNTS-FASCSTD-----------QHIHVCKLHSDKP 112 (131)
Q Consensus 78 ~~~~v~~~~~~~~~~-~~~~~~d-----------~~i~i~d~~~~~~ 112 (131)
+...+..+.|+|+++ ++.++.+ +.|++||+++++.
T Consensus 215 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 215 SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 667788999999987 6666554 5699999988755
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.61 E-value=1.6e-13 Score=87.09 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=93.9
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeeccc----ccccEEEEEEcCCCCEEEEEeC-CCcEEEEECCCcceeeeee
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQ----HKGPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQCEQQFS 76 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~----~~~~i~~~~~~~~~~~~~s~~~-d~~i~~~d~~~~~~~~~~~ 76 (131)
+++|+++.+++++.++.|.+||.. ++....+.. +...+..++|+|+++.++.++. ++.+.+||+.+++.+..+.
T Consensus 191 ~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 270 (353)
T 3vgz_A 191 ALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA 270 (353)
T ss_dssp EEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence 478999999999999999999987 444444432 4456788999999997776665 5899999999998887776
Q ss_pred cCCCCeEEEEEcCCCc-E-EEEeCCCcEEEEeCCCCeeeEEEecccceEEEEe
Q psy3840 77 FHSAPALDVDWQSNTS-F-ASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLAM 127 (131)
Q Consensus 77 ~~~~~v~~~~~~~~~~-~-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 127 (131)
... ...+.|+|+++ + ++...++.|.+||+.+++.+..+.....+...++
T Consensus 271 ~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 321 (353)
T 3vgz_A 271 APE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLAL 321 (353)
T ss_dssp CSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEE
T ss_pred cCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEE
Confidence 533 35689999976 4 4445689999999999998888776554443333
No 136
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.61 E-value=2.2e-15 Score=101.85 Aligned_cols=108 Identities=9% Similarity=0.008 Sum_probs=89.8
Q ss_pred cccCCCCEEEEEeCC----CeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCC--cEEEEECCCcceeeeee
Q psy3840 3 SSRNNGSFLATGSYD----GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK--TTIIWDAASGQCEQQFS 76 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d----~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~--~i~~~d~~~~~~~~~~~ 76 (131)
+|+|||++|+.++.+ ..|.+||+.+.....+..|.+.+..++|+|+|+.++++..++ .|++||+.+++.. .+.
T Consensus 156 ~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~ 234 (582)
T 3o4h_A 156 VSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE 234 (582)
T ss_dssp EEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC
T ss_pred EECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc
Confidence 478999999988776 779999988656667788888899999999999999888888 8999999988876 555
Q ss_pred cCCCCeEEEE--------EcCCCc-EEEEeCCCcEEEEeCCCCeee
Q psy3840 77 FHSAPALDVD--------WQSNTS-FASCSTDQHIHVCKLHSDKPV 113 (131)
Q Consensus 77 ~~~~~v~~~~--------~~~~~~-~~~~~~d~~i~i~d~~~~~~~ 113 (131)
.+...+..+. |+|++. +++++.++.+++|++ ++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~ 278 (582)
T 3o4h_A 235 LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERV 278 (582)
T ss_dssp CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee
Confidence 5555566666 999987 678889999999998 6544
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.61 E-value=2.1e-13 Score=86.09 Aligned_cols=123 Identities=7% Similarity=0.019 Sum_probs=89.2
Q ss_pred ccCCCCE-EEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeC-CCcEEEEECCCcce-eeeeecCC
Q psy3840 4 SRNNGSF-LATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQC-EQQFSFHS 79 (131)
Q Consensus 4 ~~~~~~~-l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~-d~~i~~~d~~~~~~-~~~~~~~~ 79 (131)
|.+++++ ++++..++.|.+||.. ++.+.....+.... .++|+|+++.+++++. ++.+.+||+.+++. ...+..+.
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 83 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ 83 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence 4555555 5667779999999987 66655555555566 9999999997666655 88999999999887 66666655
Q ss_pred CCeEEEEEcCCCc-EEEEeCC-C--cEEEEeCCCCeeeEEEecccceEEEEe
Q psy3840 80 APALDVDWQSNTS-FASCSTD-Q--HIHVCKLHSDKPVKSFEGHTRVYYLAM 127 (131)
Q Consensus 80 ~~v~~~~~~~~~~-~~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~ 127 (131)
.+..+++|+|+++ ++++..+ + .|.+||+++++.+..+..+..+...++
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 135 (331)
T 3u4y_A 84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAI 135 (331)
T ss_dssp SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEE
T ss_pred CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEE
Confidence 5555599999987 5644444 2 899999999988887766554443333
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.61 E-value=4.8e-14 Score=97.49 Aligned_cols=96 Identities=17% Similarity=0.113 Sum_probs=76.3
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCC---ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS 79 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (131)
+|+|||++|++++. +.|.+||+.+. ....+..+...+..++|+|+|+.++.++. +.|++||+.+++.........
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCc
Confidence 48999999999886 89999999865 66677778888999999999999998874 589999999877654433322
Q ss_pred CC----------------eEEEEEcCCCc-EEEEeCCC
Q psy3840 80 AP----------------ALDVDWQSNTS-FASCSTDQ 100 (131)
Q Consensus 80 ~~----------------v~~~~~~~~~~-~~~~~~d~ 100 (131)
.. +..+.|+||++ |+.++.|+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~ 230 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE 230 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence 21 47799999987 77776554
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.58 E-value=7.6e-15 Score=101.13 Aligned_cols=113 Identities=12% Similarity=0.169 Sum_probs=86.7
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccc---cEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCc
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKG---PIFALKWNKRGNYILSAGVD---------KTTIIWDAASG 69 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~---~i~~~~~~~~~~~~~s~~~d---------~~i~~~d~~~~ 69 (131)
+|+|+|+++++ +.|++|++||+. ++....+..|.. .+.+++|+|+|+++++++.+ +.+++||+.++
T Consensus 23 ~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 101 (723)
T 1xfd_A 23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (723)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred EEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCC
Confidence 58999997776 689999999987 555555555554 48999999999999998764 67889999988
Q ss_pred ceeeeee---cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840 70 QCEQQFS---FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 70 ~~~~~~~---~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~ 118 (131)
+. ..+. .+...+..++|+|+++ ++.++. +.|++||+.+++..+....
T Consensus 102 ~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 102 DP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp CC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred ce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC
Confidence 75 3333 2333478899999987 666654 7999999998877665544
No 140
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.58 E-value=3.2e-13 Score=91.10 Aligned_cols=111 Identities=8% Similarity=0.042 Sum_probs=90.2
Q ss_pred cccCCCCEEEEEeCCCeEEEEcC--C-CCceeecccccccEEEEEEcC----CCCEEEEEeC-CCcEEEEECCCcceeee
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTS--D-GSLKSTLGQHKGPIFALKWNK----RGNYILSAGV-DKTTIIWDAASGQCEQQ 74 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~--~-~~~~~~~~~~~~~i~~~~~~~----~~~~~~s~~~-d~~i~~~d~~~~~~~~~ 74 (131)
.++|+++++++++.|+.|++||+ . ++.+.++. +......++|+| +++++++++. ++++.+||..+++++..
T Consensus 185 ~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~ 263 (543)
T 1nir_A 185 RMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI 263 (543)
T ss_dssp EECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE
T ss_pred EECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccccee
Confidence 48999999999999999999999 4 55566655 344579999999 9999998885 89999999999988877
Q ss_pred eecC-----------CCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCCCeeeE
Q psy3840 75 FSFH-----------SAPALDVDWQSNTS--FASCSTDQHIHVCKLHSDKPVK 114 (131)
Q Consensus 75 ~~~~-----------~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~ 114 (131)
+... ...+..+.++|++. +++...++.|.+||+.+.+.+.
T Consensus 264 i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~ 316 (543)
T 1nir_A 264 VSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT 316 (543)
T ss_dssp EECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE
T ss_pred ecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce
Confidence 7642 22688999999754 6777788999999998765433
No 141
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.57 E-value=2.8e-13 Score=85.96 Aligned_cols=116 Identities=9% Similarity=0.085 Sum_probs=91.8
Q ss_pred cccCCCCEEEEEe--CCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec--
Q psy3840 3 SSRNNGSFLATGS--YDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF-- 77 (131)
Q Consensus 3 ~~~~~~~~l~~~~--~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~-- 77 (131)
.++|+++.+++++ .++.|.+||.. ++.+..+..+...+..++|+|+++.+++++.++.+.+||+.+++....+..
T Consensus 147 ~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~ 226 (353)
T 3vgz_A 147 VADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLD 226 (353)
T ss_dssp EEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred EECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCC
Confidence 4788999887776 47889999987 555555554555678899999999999999999999999999988777654
Q ss_pred --CCCCeEEEEEcCCCc-EEEE-eCCCcEEEEeCCCCeeeEEEec
Q psy3840 78 --HSAPALDVDWQSNTS-FASC-STDQHIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 78 --~~~~v~~~~~~~~~~-~~~~-~~d~~i~i~d~~~~~~~~~~~~ 118 (131)
+...+..++|+|++. ++.+ ..++.|.+||+.+++.+..+..
T Consensus 227 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 227 DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 344577899999976 5444 4558999999999988777654
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.55 E-value=8.4e-14 Score=95.99 Aligned_cols=115 Identities=10% Similarity=0.096 Sum_probs=84.7
Q ss_pred cccCCCCEEEEEeCC---------CeEEEEcCCCCceeecc---cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy3840 3 SSRNNGSFLATGSYD---------GYARIWTSDGSLKSTLG---QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ 70 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d---------~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~ 70 (131)
+|||||++|++++.+ +.+.+||+.+.....+. .|...+..++|+|+|+.++.++. +.+++||+.+++
T Consensus 67 ~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~ 145 (723)
T 1xfd_A 67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ 145 (723)
T ss_dssp EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC
T ss_pred EECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc
Confidence 489999999999764 77889998844333333 34445888999999999998876 789999999887
Q ss_pred eeeeeecCCCC------------------eEEEEEcCCCc-EEEEeCCC-------------------------------
Q psy3840 71 CEQQFSFHSAP------------------ALDVDWQSNTS-FASCSTDQ------------------------------- 100 (131)
Q Consensus 71 ~~~~~~~~~~~------------------v~~~~~~~~~~-~~~~~~d~------------------------------- 100 (131)
.......+... +..++|+||++ |+.++.++
T Consensus 146 ~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 225 (723)
T 1xfd_A 146 AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSEN 225 (723)
T ss_dssp CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCC
T ss_pred eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCC
Confidence 66554433332 37899999987 76665432
Q ss_pred ---cEEEEeCCCCeeeEEEec
Q psy3840 101 ---HIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 101 ---~i~i~d~~~~~~~~~~~~ 118 (131)
.|++||+.+++....+..
T Consensus 226 ~~~~l~~~d~~~~~~~~~l~~ 246 (723)
T 1xfd_A 226 PSISLHVIGLNGPTHDLEMMP 246 (723)
T ss_dssp CEEEEEEEESSSSCCCEECCC
T ss_pred CeeEEEEEECCCCceeEEeeC
Confidence 789999988775444443
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.55 E-value=1.2e-12 Score=82.52 Aligned_cols=118 Identities=7% Similarity=0.047 Sum_probs=83.3
Q ss_pred cccCCCCEEEEEeCCC---eEEEEcCC-CCceeecccccccEEEEEEcCCCCEEE-EEeCCCc-EEEEECCCcceee---
Q psy3840 3 SSRNNGSFLATGSYDG---YARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKT-TIIWDAASGQCEQ--- 73 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~---~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~-s~~~d~~-i~~~d~~~~~~~~--- 73 (131)
+|+|++++++++..++ .|.+||+. ++.+..+.. ......++|+|++++++ +...++. +.+|++.....+.
T Consensus 90 ~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~ 168 (331)
T 3u4y_A 90 DITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG 168 (331)
T ss_dssp EECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred EECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC
Confidence 5789999999655553 89999987 444444443 34568999999998555 4455688 9999987543321
Q ss_pred -eeecCCCCeEEEEEcCCCc-E-EEEeCCCcEEEEeCCCCee---eEEEecccc
Q psy3840 74 -QFSFHSAPALDVDWQSNTS-F-ASCSTDQHIHVCKLHSDKP---VKSFEGHTR 121 (131)
Q Consensus 74 -~~~~~~~~v~~~~~~~~~~-~-~~~~~d~~i~i~d~~~~~~---~~~~~~~~~ 121 (131)
...........++|+|+++ + +++..++.|++||+++++. +..+..+..
T Consensus 169 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~ 222 (331)
T 3u4y_A 169 QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNL 222 (331)
T ss_dssp EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSC
T ss_pred CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCC
Confidence 1112345678999999987 4 4555688999999998887 766654433
No 144
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.53 E-value=3.3e-13 Score=85.41 Aligned_cols=109 Identities=4% Similarity=-0.073 Sum_probs=82.6
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeeccccc-ccEEEEEEcCCCCEEE-EEeCCCcEEEEECCCcceeeeeecCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHK-GPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSFHS 79 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~-~~i~~~~~~~~~~~~~-s~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (131)
++++++.++++++.++.|.+||.. ++.+..+..+. ..+..++|+|+++.++ +...++.+.+||+.+++.+..+....
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~ 85 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 85 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc
Confidence 467788899999999999999987 55555544332 1567899999998654 55568999999999988776665322
Q ss_pred ------CCeEEEEEcCCCc-EEEEeCC------------CcEEEEeCCCCe
Q psy3840 80 ------APALDVDWQSNTS-FASCSTD------------QHIHVCKLHSDK 111 (131)
Q Consensus 80 ------~~v~~~~~~~~~~-~~~~~~d------------~~i~i~d~~~~~ 111 (131)
..+..++|+|+++ +++++.+ +.|.+||+.+++
T Consensus 86 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 86 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 2377899999987 6666644 899999998743
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.51 E-value=3e-12 Score=79.01 Aligned_cols=118 Identities=13% Similarity=0.210 Sum_probs=82.2
Q ss_pred cccCCCCEEEEEeC--CCeEEEE--cCCCCceeecccccccEEEEEEcCCCCEEE-EEeCCCcEEEEECCC-cceeeeee
Q psy3840 3 SSRNNGSFLATGSY--DGYARIW--TSDGSLKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAAS-GQCEQQFS 76 (131)
Q Consensus 3 ~~~~~~~~l~~~~~--d~~i~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-s~~~d~~i~~~d~~~-~~~~~~~~ 76 (131)
.|+|+++++++++. ++...+| +..+.....+..+. .+..++|+|+++.++ ++..++.+++|++.. +.....+.
T Consensus 91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 169 (297)
T 2ojh_A 91 GISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT 169 (297)
T ss_dssp EECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred EECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc
Confidence 58999999999983 3445554 55544444444443 488899999999877 777899999998642 23334555
Q ss_pred cCCCCeEEEEEcCCCc-EEEEe-CCCcEEEEeCC-CCeeeEEEecccc
Q psy3840 77 FHSAPALDVDWQSNTS-FASCS-TDQHIHVCKLH-SDKPVKSFEGHTR 121 (131)
Q Consensus 77 ~~~~~v~~~~~~~~~~-~~~~~-~d~~i~i~d~~-~~~~~~~~~~~~~ 121 (131)
.+...+..+.|+|++. ++.++ .++.+.+|+++ .+..+..+..|..
T Consensus 170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 217 (297)
T 2ojh_A 170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAY 217 (297)
T ss_dssp CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSE
T ss_pred cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCc
Confidence 5667899999999987 55544 58889999876 4455555554443
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.51 E-value=5.6e-13 Score=91.81 Aligned_cols=122 Identities=15% Similarity=0.144 Sum_probs=88.1
Q ss_pred cccCCCCEEEEEe---------------------------------CCCeEEEEcCCCCceeecc---cccccEEEEEEc
Q psy3840 3 SSRNNGSFLATGS---------------------------------YDGYARIWTSDGSLKSTLG---QHKGPIFALKWN 46 (131)
Q Consensus 3 ~~~~~~~~l~~~~---------------------------------~d~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~ 46 (131)
+|+|||++|++++ .+..|.+||+.+.....+. .|...+..++|+
T Consensus 187 ~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 266 (706)
T 2z3z_A 187 FWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWS 266 (706)
T ss_dssp EECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEEC
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEE
Confidence 4899999999987 3467999998744433322 466789999999
Q ss_pred CCCCEEEEEeCCC-----cEEEEECCCcceeeeee-c-CC---CCeEEEEEcC--CCc-EEEEeCCCcEEEEeCC-CCee
Q psy3840 47 KRGNYILSAGVDK-----TTIIWDAASGQCEQQFS-F-HS---APALDVDWQS--NTS-FASCSTDQHIHVCKLH-SDKP 112 (131)
Q Consensus 47 ~~~~~~~s~~~d~-----~i~~~d~~~~~~~~~~~-~-~~---~~v~~~~~~~--~~~-~~~~~~d~~i~i~d~~-~~~~ 112 (131)
|+++.+++++.++ .+++||+.+++....+. . .. ..+..+.|+| +++ ++++..++.+++|++. ++..
T Consensus 267 pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~ 346 (706)
T 2z3z_A 267 PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRL 346 (706)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCE
T ss_pred CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCE
Confidence 9999999877665 89999999884333332 1 11 1246789999 988 6777788888888875 5666
Q ss_pred eEEEecccceEE
Q psy3840 113 VKSFEGHTRVYY 124 (131)
Q Consensus 113 ~~~~~~~~~~~~ 124 (131)
+..+..+...+.
T Consensus 347 ~~~l~~~~~~v~ 358 (706)
T 2z3z_A 347 IRQVTKGEWEVT 358 (706)
T ss_dssp EEECCCSSSCEE
T ss_pred EEecCCCCeEEE
Confidence 666666554443
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.51 E-value=1.4e-12 Score=82.19 Aligned_cols=114 Identities=11% Similarity=0.084 Sum_probs=86.6
Q ss_pred cccCCCCEEEE-EeCCCeEEEEcCC-CCceeeccc-c----cccEEEEEEcCCCCEEEEEe------------CCCcEEE
Q psy3840 3 SSRNNGSFLAT-GSYDGYARIWTSD-GSLKSTLGQ-H----KGPIFALKWNKRGNYILSAG------------VDKTTII 63 (131)
Q Consensus 3 ~~~~~~~~l~~-~~~d~~i~~~~~~-~~~~~~~~~-~----~~~i~~~~~~~~~~~~~s~~------------~d~~i~~ 63 (131)
+++|+++.+++ +..++.|.+||+. ++.+..+.. + ...+..++|+|+++.+++++ .++.+.+
T Consensus 40 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v 119 (337)
T 1pby_B 40 MVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVAL 119 (337)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEE
T ss_pred EEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEE
Confidence 47899977655 4557899999987 555444432 1 22567889999999888886 5799999
Q ss_pred EECCCcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840 64 WDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH 119 (131)
Q Consensus 64 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~ 119 (131)
||+.+++.+..+.. ...+..++|+|+++ ++++ ++.|++||+++++.+..+..+
T Consensus 120 ~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~ 173 (337)
T 1pby_B 120 YDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQ 173 (337)
T ss_dssp EETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECST
T ss_pred EECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecc
Confidence 99998887777664 45678899999987 6665 688999999999887766543
No 148
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.50 E-value=7.7e-13 Score=83.49 Aligned_cols=108 Identities=5% Similarity=0.019 Sum_probs=79.7
Q ss_pred cccCCCCEEEEEeCC-CeEEEEcCC--CCce---eecccccccEEEEEEcCCCCEEEEEeC-CCcEEEEECC---Cccee
Q psy3840 3 SSRNNGSFLATGSYD-GYARIWTSD--GSLK---STLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAA---SGQCE 72 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d-~~i~~~~~~--~~~~---~~~~~~~~~i~~~~~~~~~~~~~s~~~-d~~i~~~d~~---~~~~~ 72 (131)
+|+|+++++++++.+ +.|.+|++. .... ..+..+ +.+..++|+|+++.+++++. ++.+.+||+. ..+..
T Consensus 44 ~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~ 122 (343)
T 1ri6_A 44 VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV 122 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred EECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccc
Confidence 478999999988886 899999986 2222 223322 37789999999998876665 8889999994 33444
Q ss_pred eeeecCCCCeEEEEEcCCCc-EEEEe-CCCcEEEEeCCC-Cee
Q psy3840 73 QQFSFHSAPALDVDWQSNTS-FASCS-TDQHIHVCKLHS-DKP 112 (131)
Q Consensus 73 ~~~~~~~~~v~~~~~~~~~~-~~~~~-~d~~i~i~d~~~-~~~ 112 (131)
..+.. ...+..++|+|+++ +++++ .++.|++||+.+ ++.
T Consensus 123 ~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 123 DVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp EEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred ccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 44443 34688899999986 66655 789999999987 543
No 149
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=95.27 Aligned_cols=109 Identities=14% Similarity=0.164 Sum_probs=80.9
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCC-Cceeecccccc---cEEEEEEcCCCCEEEEEeC---------CCcEEEEECCCc
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDG-SLKSTLGQHKG---PIFALKWNKRGNYILSAGV---------DKTTIIWDAASG 69 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~-~~~~~~~~~~~---~i~~~~~~~~~~~~~s~~~---------d~~i~~~d~~~~ 69 (131)
.|+|+++++++ +.|+.|++||+.+ +....+..+.. .+.+++|+|+|++++.++. ++.+++||+.++
T Consensus 22 ~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g 100 (719)
T 1z68_A 22 NWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG 100 (719)
T ss_dssp EESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred EECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC
Confidence 47899965555 4699999999884 44444444433 3889999999999998876 689999999988
Q ss_pred ceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeE
Q psy3840 70 QCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVK 114 (131)
Q Consensus 70 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~ 114 (131)
+.+.... ....+..++|+|+|+ ++.+ .++.|++||+.+++..+
T Consensus 101 ~~~~~~~-l~~~~~~~~~SPDG~~la~~-~~~~i~~~~~~~g~~~~ 144 (719)
T 1z68_A 101 EFVRGNE-LPRPIQYLCWSPVGSKLAYV-YQNNIYLKQRPGDPPFQ 144 (719)
T ss_dssp EECCSSC-CCSSBCCEEECSSTTCEEEE-ETTEEEEESSTTSCCEE
T ss_pred cccccee-cCcccccceECCCCCEEEEE-ECCeEEEEeCCCCCcEE
Confidence 7631111 124678899999998 6655 57899999998876543
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.50 E-value=2.3e-13 Score=92.08 Aligned_cols=114 Identities=17% Similarity=0.188 Sum_probs=84.4
Q ss_pred cccCCCCE-EEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCC----CcEEEEECCCcceeeeeec
Q psy3840 3 SSRNNGSF-LATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD----KTTIIWDAASGQCEQQFSF 77 (131)
Q Consensus 3 ~~~~~~~~-l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d----~~i~~~d~~~~~~~~~~~~ 77 (131)
+|+|+++. +++...++.+.+||+.+.....+..+.. .+++|+|+|+.+++++.+ +.+++||+.+++.. .+..
T Consensus 116 ~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~ 192 (582)
T 3o4h_A 116 SGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDS 192 (582)
T ss_dssp EEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECC
T ss_pred eeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eeec
Confidence 56788754 3333344455599987555444444444 788999999999987766 77999999888754 5666
Q ss_pred CCCCeEEEEEcCCCc-EEEEeCCC--cEEEEeCCCCeeeEEEeccc
Q psy3840 78 HSAPALDVDWQSNTS-FASCSTDQ--HIHVCKLHSDKPVKSFEGHT 120 (131)
Q Consensus 78 ~~~~v~~~~~~~~~~-~~~~~~d~--~i~i~d~~~~~~~~~~~~~~ 120 (131)
+...+..++|+|||+ ++++..++ .|++||+.+++.. .+..|.
T Consensus 193 ~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~ 237 (582)
T 3o4h_A 193 GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS 237 (582)
T ss_dssp SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC
T ss_pred CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC
Confidence 777889999999988 77777788 8999999988776 555443
No 151
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.49 E-value=6.9e-13 Score=91.36 Aligned_cols=111 Identities=11% Similarity=0.084 Sum_probs=82.3
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCC-----Cc-eeeccccccc--------------EEEEEEcCCCCEEEEEe------
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDG-----SL-KSTLGQHKGP--------------IFALKWNKRGNYILSAG------ 56 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~-----~~-~~~~~~~~~~--------------i~~~~~~~~~~~~~s~~------ 56 (131)
+|+|||+.|+.+ .++.|.+|++.+ .. ......+... +.++.|+|+++.+++++
T Consensus 127 ~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~ 205 (706)
T 2z3z_A 127 DFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMV 205 (706)
T ss_dssp EECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTS
T ss_pred cCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCC
Confidence 589999999995 678999999865 33 3323333332 47899999999999887
Q ss_pred ---------------------------CCCcEEEEECCCcceeeeee--cCCCCeEEEEEcCCCc-EEEEeCCC-----c
Q psy3840 57 ---------------------------VDKTTIIWDAASGQCEQQFS--FHSAPALDVDWQSNTS-FASCSTDQ-----H 101 (131)
Q Consensus 57 ---------------------------~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~-~~~~~~d~-----~ 101 (131)
.+..+++||+.+++...... .+...+..++|+|+++ +++++.++ .
T Consensus 206 ~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 285 (706)
T 2z3z_A 206 KPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECK 285 (706)
T ss_dssp CCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEE
T ss_pred ceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeE
Confidence 44679999999887544332 3445688999999987 77766554 8
Q ss_pred EEEEeCCCCeeeE
Q psy3840 102 IHVCKLHSDKPVK 114 (131)
Q Consensus 102 i~i~d~~~~~~~~ 114 (131)
|++||+.+++...
T Consensus 286 v~~~d~~~g~~~~ 298 (706)
T 2z3z_A 286 VNAYDAETGRFVR 298 (706)
T ss_dssp EEEEETTTCCEEE
T ss_pred EEEEECCCCceee
Confidence 9999999884333
No 152
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.48 E-value=6.7e-12 Score=79.18 Aligned_cols=117 Identities=9% Similarity=0.074 Sum_probs=79.4
Q ss_pred cccCCCCEEEEEe-CCCeEEEEcCCC-Ccee-----eccc-ccccEEEEEEcCCCCEEEEEe-CCCcEEEEECCC--cce
Q psy3840 3 SSRNNGSFLATGS-YDGYARIWTSDG-SLKS-----TLGQ-HKGPIFALKWNKRGNYILSAG-VDKTTIIWDAAS--GQC 71 (131)
Q Consensus 3 ~~~~~~~~l~~~~-~d~~i~~~~~~~-~~~~-----~~~~-~~~~i~~~~~~~~~~~~~s~~-~d~~i~~~d~~~--~~~ 71 (131)
+|+|+++.+++++ .++.|.+|++.. ..+. .... ....+..++|+|++++++.++ .++.+.+|++.. ++.
T Consensus 135 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~ 214 (343)
T 1ri6_A 135 NISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI 214 (343)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC
T ss_pred EECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE
Confidence 4789999888887 799999999863 3222 2222 234678899999999776554 789999999954 332
Q ss_pred --eeeee---cC---CCCeEEEEEcCCCc-EE-EEeCCCcEEEEeCC--C--CeeeEEEecc
Q psy3840 72 --EQQFS---FH---SAPALDVDWQSNTS-FA-SCSTDQHIHVCKLH--S--DKPVKSFEGH 119 (131)
Q Consensus 72 --~~~~~---~~---~~~v~~~~~~~~~~-~~-~~~~d~~i~i~d~~--~--~~~~~~~~~~ 119 (131)
..... .. ...+..++|+|+++ ++ +...++.|.+||++ + .+.+..+..+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~ 276 (343)
T 1ri6_A 215 ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE 276 (343)
T ss_dssp EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS
T ss_pred EEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC
Confidence 22222 11 23466899999986 54 55578999999998 2 3444444433
No 153
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.48 E-value=1e-12 Score=94.18 Aligned_cols=117 Identities=15% Similarity=0.136 Sum_probs=95.7
Q ss_pred ccc-CCCCEEEEEeCCCeEEEEcCCCCceeecccccc-cEEEEEEcCCCCEEEEEeCCCcEE-EEECCCcceeeeeecCC
Q psy3840 3 SSR-NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKG-PIFALKWNKRGNYILSAGVDKTTI-IWDAASGQCEQQFSFHS 79 (131)
Q Consensus 3 ~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~s~~~d~~i~-~~d~~~~~~~~~~~~~~ 79 (131)
+|+ |+|+.+++++ ++.+.+|+..+.....+..|.+ .+..++|+ +++.++.++.+..+. +||+..++... +..+.
T Consensus 302 ~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~ 378 (1045)
T 1k32_A 302 DFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENL 378 (1045)
T ss_dssp EEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCC
T ss_pred eecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCc
Confidence 478 9999999987 7899999988665566677777 89999999 999999988888888 89988776543 33666
Q ss_pred CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccce
Q psy3840 80 APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRV 122 (131)
Q Consensus 80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 122 (131)
..+..++|+|+++ +++++.++.+++||+.+++.......|...
T Consensus 379 ~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~ 422 (1045)
T 1k32_A 379 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM 422 (1045)
T ss_dssp CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC
T ss_pred cceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCC
Confidence 7899999999987 888899999999999998877766555443
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.47 E-value=1.7e-13 Score=94.62 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=68.8
Q ss_pred cccCCCCEEEEEeC---------CCeEEEEcCCCCce---eecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy3840 3 SSRNNGSFLATGSY---------DGYARIWTSDGSLK---STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ 70 (131)
Q Consensus 3 ~~~~~~~~l~~~~~---------d~~i~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~ 70 (131)
+|||||++|+.++. ++.|++||+.+... ..+ ...+..++|+|+|+.++.+. ++.|++||+.+++
T Consensus 66 ~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~ 141 (719)
T 1z68_A 66 GLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDP 141 (719)
T ss_dssp EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSC
T ss_pred EECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCC
Confidence 48999999999876 68999999985444 333 24678899999999999885 7799999998877
Q ss_pred eeeeee-cCCCCe-----------------EEEEEcCCCc-EEEEeCC
Q psy3840 71 CEQQFS-FHSAPA-----------------LDVDWQSNTS-FASCSTD 99 (131)
Q Consensus 71 ~~~~~~-~~~~~v-----------------~~~~~~~~~~-~~~~~~d 99 (131)
...... ++...+ ..++|+||++ |+.++.|
T Consensus 142 ~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d 189 (719)
T 1z68_A 142 PFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFN 189 (719)
T ss_dssp CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred cEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEEC
Confidence 643321 221112 4799999987 7766544
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.47 E-value=2.6e-12 Score=80.91 Aligned_cols=110 Identities=6% Similarity=0.110 Sum_probs=82.8
Q ss_pred CEEEEEeCCCeEEEEcCC-CCceeecccccc--cEEEEEEcCCCCEEE-EEeCCCcEEEEECCCcceeeeeecCC-----
Q psy3840 9 SFLATGSYDGYARIWTSD-GSLKSTLGQHKG--PIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSFHS----- 79 (131)
Q Consensus 9 ~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~--~i~~~~~~~~~~~~~-s~~~d~~i~~~d~~~~~~~~~~~~~~----- 79 (131)
+++++++.++.|.+||.. ++.+..+..... .+..++|+|+++.++ ++..++.+.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 578899999999999987 455544442221 478899999997654 55567899999999988876665321
Q ss_pred CCeEEEEEcCCCc-EEEEe------------CCCcEEEEeCCCCeeeEEEec
Q psy3840 80 APALDVDWQSNTS-FASCS------------TDQHIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 80 ~~v~~~~~~~~~~-~~~~~------------~d~~i~i~d~~~~~~~~~~~~ 118 (131)
..+..++|+|+++ ++++. .++.|.+||+.+++.+..+..
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 133 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC
Confidence 2567899999986 66654 578999999999888777654
No 156
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.47 E-value=8.2e-13 Score=90.41 Aligned_cols=112 Identities=9% Similarity=0.071 Sum_probs=84.4
Q ss_pred cccCCCCEEEEEeCC----------CeEEEEcCCC------Cceeecc-cccccEEEEEEcCCCCEEEEEeCC-------
Q psy3840 3 SSRNNGSFLATGSYD----------GYARIWTSDG------SLKSTLG-QHKGPIFALKWNKRGNYILSAGVD------- 58 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d----------~~i~~~~~~~------~~~~~~~-~~~~~i~~~~~~~~~~~~~s~~~d------- 58 (131)
+|+|||+.|+.++.+ ..|.+||+.+ .....+. .+...+..++|+|+|+.++..+.+
T Consensus 136 ~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~ 215 (662)
T 3azo_A 136 VLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWE 215 (662)
T ss_dssp EEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTT
T ss_pred EECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCC
Confidence 589999999998876 5799999887 6666666 666778889999999999877754
Q ss_pred -CcEEEEECC-Cc---ceeeeeecCCCCeEEEEEcCCCc-EEEEeCCC--cEEEEeCCCCeeeE
Q psy3840 59 -KTTIIWDAA-SG---QCEQQFSFHSAPALDVDWQSNTS-FASCSTDQ--HIHVCKLHSDKPVK 114 (131)
Q Consensus 59 -~~i~~~d~~-~~---~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~--~i~i~d~~~~~~~~ 114 (131)
..|++||+. ++ +.......+...+..+.|+|+++ ++++..++ .|++||+.+++...
T Consensus 216 ~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~ 279 (662)
T 3azo_A 216 GTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ 279 (662)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE
T ss_pred CcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee
Confidence 379999998 56 33333334457889999999988 56666677 67777776665443
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.47 E-value=3e-12 Score=81.89 Aligned_cols=111 Identities=9% Similarity=0.062 Sum_probs=77.9
Q ss_pred cccCCCCEEEEEe-CCCeEEEEcCCCCce---eec---ccccccEEEEEEcCCCCEEEEEeC--CCcEEEEECC--Ccc-
Q psy3840 3 SSRNNGSFLATGS-YDGYARIWTSDGSLK---STL---GQHKGPIFALKWNKRGNYILSAGV--DKTTIIWDAA--SGQ- 70 (131)
Q Consensus 3 ~~~~~~~~l~~~~-~d~~i~~~~~~~~~~---~~~---~~~~~~i~~~~~~~~~~~~~s~~~--d~~i~~~d~~--~~~- 70 (131)
+|+|+++++++++ .++.|.+|++....+ ..+ ..+......++|+|++++++++.. ++.+.+|++. +++
T Consensus 217 ~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~ 296 (361)
T 3scy_A 217 IFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL 296 (361)
T ss_dssp EECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE
T ss_pred EEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE
Confidence 4899999888877 588999999863222 111 223344679999999998876665 4899999986 344
Q ss_pred -eeeeeecCCCCeEEEEEcCCCc-EEEEe-CCCcEEEE--eCCCCeeeE
Q psy3840 71 -CEQQFSFHSAPALDVDWQSNTS-FASCS-TDQHIHVC--KLHSDKPVK 114 (131)
Q Consensus 71 -~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d~~i~i~--d~~~~~~~~ 114 (131)
.+..+.. ...+..++|+|+++ +++++ .++.+.+| |.++++...
T Consensus 297 ~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 297 TKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp EEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence 3344444 45678899999987 66665 56889996 555665543
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.45 E-value=6.4e-12 Score=79.52 Aligned_cols=78 Identities=12% Similarity=0.014 Sum_probs=64.4
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEE
Q psy3840 39 PIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSF 116 (131)
Q Consensus 39 ~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~ 116 (131)
.+..++++| +++.++++ ++.+.+||+.+++.+..+... ..+..++|+|+++ +++++.++.|.+||+++++.+..+
T Consensus 256 ~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 256 LYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp CEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred cceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeeee
Confidence 345677889 99998888 889999999999887776643 4567899999976 777788899999999999998888
Q ss_pred ecc
Q psy3840 117 EGH 119 (131)
Q Consensus 117 ~~~ 119 (131)
..+
T Consensus 333 ~~~ 335 (349)
T 1jmx_B 333 KLP 335 (349)
T ss_dssp ECS
T ss_pred ecC
Confidence 655
No 159
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.43 E-value=2.9e-12 Score=81.49 Aligned_cols=108 Identities=13% Similarity=0.126 Sum_probs=76.4
Q ss_pred cccCCCCEEEEEeC---CCeEEEEcCCCC---ceeecccccccEEEEEEcCCCCEEEEEe-CCCcEEEEECCC-cc--ee
Q psy3840 3 SSRNNGSFLATGSY---DGYARIWTSDGS---LKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAAS-GQ--CE 72 (131)
Q Consensus 3 ~~~~~~~~l~~~~~---d~~i~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~s~~-~d~~i~~~d~~~-~~--~~ 72 (131)
+|+|+++ +++++. ++.|.+|++... .+..+..+...+..++|+|+++++++++ .++.+.+|++.. +. .+
T Consensus 46 a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~ 124 (347)
T 3hfq_A 46 ALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLT 124 (347)
T ss_dssp EECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred EEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeec
Confidence 4789999 555544 588999998633 2333344667788999999999888887 678999999963 32 22
Q ss_pred eeeecC---------CCCeEEEEEcCCCc-EEEEeCCCcEEEEeCC-CCe
Q psy3840 73 QQFSFH---------SAPALDVDWQSNTS-FASCSTDQHIHVCKLH-SDK 111 (131)
Q Consensus 73 ~~~~~~---------~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~-~~~ 111 (131)
..+... ...+..++|+|+++ +++...++.|.+|++. +++
T Consensus 125 ~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~ 174 (347)
T 3hfq_A 125 DTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ 174 (347)
T ss_dssp EEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSC
T ss_pred ceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCc
Confidence 232211 12478899999988 4555567889999998 443
No 160
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.43 E-value=1.5e-11 Score=79.05 Aligned_cols=114 Identities=10% Similarity=-0.019 Sum_probs=81.2
Q ss_pred cccCCCCEEEEEeC-CCe--EEEEcCCCC-ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC
Q psy3840 3 SSRNNGSFLATGSY-DGY--ARIWTSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH 78 (131)
Q Consensus 3 ~~~~~~~~l~~~~~-d~~--i~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~ 78 (131)
+|+|||+.|+.++. ++. |.+||+.+. .......+...+..+.|+|+++.++.++.++.+++||+.+++.......+
T Consensus 42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~ 121 (388)
T 3pe7_A 42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVP 121 (388)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred cCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeech
Confidence 58999999999887 664 778888744 44444455555556789999999999999999999999998876655544
Q ss_pred CCCeEEEE--EcCCCcEEEE-----------------------eCCCcEEEEeCCCCeeeEEE
Q psy3840 79 SAPALDVD--WQSNTSFASC-----------------------STDQHIHVCKLHSDKPVKSF 116 (131)
Q Consensus 79 ~~~v~~~~--~~~~~~~~~~-----------------------~~d~~i~i~d~~~~~~~~~~ 116 (131)
...+.... ++|+++++.+ ..+..|++||+.+++.....
T Consensus 122 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 184 (388)
T 3pe7_A 122 AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL 184 (388)
T ss_dssp TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE
T ss_pred hhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee
Confidence 44343333 3788774331 23467999999988654433
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.43 E-value=3.2e-11 Score=77.10 Aligned_cols=106 Identities=11% Similarity=0.169 Sum_probs=74.4
Q ss_pred cccCCCCEEEEEeC-CCeEEEEcCC--CC------ce------eecccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q psy3840 3 SSRNNGSFLATGSY-DGYARIWTSD--GS------LK------STLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDA 66 (131)
Q Consensus 3 ~~~~~~~~l~~~~~-d~~i~~~~~~--~~------~~------~~~~~~~~~i~~~~~~~~~~~~~s~~-~d~~i~~~d~ 66 (131)
+|+|+++++++++. ++.|.+|++. +. .. ............++|+|+++++++++ .++.+.+|++
T Consensus 161 ~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 240 (361)
T 3scy_A 161 RITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRY 240 (361)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEe
Confidence 57999997766654 7899999876 21 11 11222344578899999999887776 6899999999
Q ss_pred CCcce--eeeee---cCCCCeEEEEEcCCCc-EEEEeC--CCcEEEEeCC
Q psy3840 67 ASGQC--EQQFS---FHSAPALDVDWQSNTS-FASCST--DQHIHVCKLH 108 (131)
Q Consensus 67 ~~~~~--~~~~~---~~~~~v~~~~~~~~~~-~~~~~~--d~~i~i~d~~ 108 (131)
.+++. +..+. .+......++|+|+++ ++++.. ++.|.+|++.
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 241 ADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp ETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred cCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 87643 22222 2234567999999988 545544 4789999985
No 162
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.43 E-value=1.3e-11 Score=78.47 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=77.2
Q ss_pred cccCCCCEEEEE-eCCCeEEEEcCC---CCc--eeeccccc------ccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCc
Q psy3840 3 SSRNNGSFLATG-SYDGYARIWTSD---GSL--KSTLGQHK------GPIFALKWNKRGNYI-LSAGVDKTTIIWDAASG 69 (131)
Q Consensus 3 ~~~~~~~~l~~~-~~d~~i~~~~~~---~~~--~~~~~~~~------~~i~~~~~~~~~~~~-~s~~~d~~i~~~d~~~~ 69 (131)
+|+|+|++++++ ..++.|.+|++. ++. +..+.... ..+..++|+|+++++ ++...++.+.+|++...
T Consensus 193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 589999977664 458899999875 221 11222211 347889999999977 45566899999999732
Q ss_pred ---ceeeeeecCCCCeEEEEEcCCCc-EEEEeC-CCcEEEE--eCCCCeee
Q psy3840 70 ---QCEQQFSFHSAPALDVDWQSNTS-FASCST-DQHIHVC--KLHSDKPV 113 (131)
Q Consensus 70 ---~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-d~~i~i~--d~~~~~~~ 113 (131)
+.+..+..+...+..++|+|+++ +++++. ++.+.+| |.++++..
T Consensus 273 g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 273 GHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp GCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 34445555555678999999987 666655 5889999 55566544
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.42 E-value=2e-11 Score=75.70 Aligned_cols=108 Identities=12% Similarity=0.214 Sum_probs=82.6
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCCceeecccc--cccEEEEEEcCCCCEEEEEeCCC-cEEEEECCCcceeeeeecCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQH--KGPIFALKWNKRGNYILSAGVDK-TTIIWDAASGQCEQQFSFHS 79 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~s~~~d~-~i~~~d~~~~~~~~~~~~~~ 79 (131)
+++++++++++...++.|++|+..++.+..+... ...+..++++++++++++...++ .|.+||. +++.+..+..+.
T Consensus 170 ~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~ 248 (286)
T 1q7f_A 170 VVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV 248 (286)
T ss_dssp EECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS
T ss_pred EECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC
Confidence 3577888777777789999999887766665433 35688999999999888888776 9999995 566666665433
Q ss_pred --CCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCe
Q psy3840 80 --APALDVDWQSNTSFASCSTDQHIHVCKLHSDK 111 (131)
Q Consensus 80 --~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 111 (131)
..+..++++|+++++.++.++.|++|++....
T Consensus 249 ~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 249 KHAQCFDVALMDDGSVVLASKDYRLYIYRYVQLA 282 (286)
T ss_dssp CCSCEEEEEEETTTEEEEEETTTEEEEEECSCCC
T ss_pred CCCcceeEEECCCCcEEEECCCCeEEEEEccccc
Confidence 24778999999985555778999999986543
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.41 E-value=1e-12 Score=91.24 Aligned_cols=108 Identities=14% Similarity=0.064 Sum_probs=82.6
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCceeeccccccc-----EEEEEEcCCCCEEEEEeCC---------CcEEEEECC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGP-----IFALKWNKRGNYILSAGVD---------KTTIIWDAA 67 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~-----i~~~~~~~~~~~~~s~~~d---------~~i~~~d~~ 67 (131)
.|+|++++++++ |++|++||+. ++....+.+|... ...+.|||+|+.++.++.+ +.+.+||+.
T Consensus 23 ~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~ 100 (740)
T 4a5s_A 23 RWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN 100 (740)
T ss_dssp EECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred EECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECC
Confidence 478999988886 8999999987 5555555555432 2347899999999988775 566799999
Q ss_pred CcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeE
Q psy3840 68 SGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVK 114 (131)
Q Consensus 68 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~ 114 (131)
+++.. .+..+...+...+|+|||+ ++.+ .++.|++||+.+++..+
T Consensus 101 ~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~ 146 (740)
T 4a5s_A 101 KRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR 146 (740)
T ss_dssp TTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE
T ss_pred CCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEE
Confidence 98754 3555567899999999998 6555 67899999998876543
No 165
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.38 E-value=2.5e-11 Score=84.00 Aligned_cols=107 Identities=11% Similarity=0.148 Sum_probs=75.9
Q ss_pred cccCCCCEEEEEeCCC-----eEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCc----------------E
Q psy3840 3 SSRNNGSFLATGSYDG-----YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKT----------------T 61 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~-----~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~----------------i 61 (131)
+|||||++|+.+..++ .|++||+.+............+..++|+|+++.++.+..++. |
T Consensus 131 ~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v 210 (710)
T 2xdw_A 131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKL 210 (710)
T ss_dssp EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEE
T ss_pred EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEE
Confidence 5899999998876643 899999984443332222233677899999999998887765 9
Q ss_pred EEEECCCccee--eeeec--CCCCeEEEEEcCCCc-EEEEeC-----CCcEEEEeCCC
Q psy3840 62 IIWDAASGQCE--QQFSF--HSAPALDVDWQSNTS-FASCST-----DQHIHVCKLHS 109 (131)
Q Consensus 62 ~~~d~~~~~~~--~~~~~--~~~~v~~~~~~~~~~-~~~~~~-----d~~i~i~d~~~ 109 (131)
++|++.+++.. ..+.. +...+..+.|+|+++ ++.... +..|++||+.+
T Consensus 211 ~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 211 YYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred EEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 99999876532 22222 334577899999987 554433 56899999976
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.37 E-value=2.2e-11 Score=84.65 Aligned_cols=94 Identities=11% Similarity=0.052 Sum_probs=70.9
Q ss_pred cccCCCCEEEEEeCC---------CeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceee
Q psy3840 3 SSRNNGSFLATGSYD---------GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ 73 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d---------~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~ 73 (131)
+|||||++|+.++.+ +.+.+||+.+.....+..+.+.+...+|||+|+.++.+ .++.|++|++.+++..+
T Consensus 68 ~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~ 146 (740)
T 4a5s_A 68 SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR 146 (740)
T ss_dssp EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE
T ss_pred EECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEE
Confidence 469999999998876 55679999866666777788899999999999999887 56789999998876543
Q ss_pred ee-ecCCC-----------------CeEEEEEcCCCc-EEEEe
Q psy3840 74 QF-SFHSA-----------------PALDVDWQSNTS-FASCS 97 (131)
Q Consensus 74 ~~-~~~~~-----------------~v~~~~~~~~~~-~~~~~ 97 (131)
.- .++.. ....+.|+|||+ |+...
T Consensus 147 lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 147 ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred EcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence 21 12211 123589999987 66553
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.34 E-value=3.6e-10 Score=70.05 Aligned_cols=115 Identities=13% Similarity=0.202 Sum_probs=85.4
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCCceeecc--cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC--
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLG--QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH-- 78 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~-- 78 (131)
+++++++++++...++.|.+|+..++.+..+. .+...+..++++|+++.+++...++.|++||. +++.+..+...
T Consensus 127 ~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~ 205 (286)
T 1q7f_A 127 TVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGI 205 (286)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTT
T ss_pred EEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCc
Confidence 35788887777777889999998776665553 34456889999999998888888999999997 45555555433
Q ss_pred CCCeEEEEEcCCCc-EEEEeCCC-cEEEEeCCCCeeeEEEecc
Q psy3840 79 SAPALDVDWQSNTS-FASCSTDQ-HIHVCKLHSDKPVKSFEGH 119 (131)
Q Consensus 79 ~~~v~~~~~~~~~~-~~~~~~d~-~i~i~d~~~~~~~~~~~~~ 119 (131)
...+..+++++++. +++...++ .|.+||. +++.+..+..+
T Consensus 206 ~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~ 247 (286)
T 1q7f_A 206 TNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK 247 (286)
T ss_dssp SCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES
T ss_pred cCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc
Confidence 25688999999988 45555565 9999995 46666666543
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.34 E-value=2.2e-10 Score=72.69 Aligned_cols=114 Identities=13% Similarity=0.127 Sum_probs=86.9
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCC--ceeec---------ccccccEEEEEEcC-CCCEEEEEe-CCCcEEEEECCCc
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGS--LKSTL---------GQHKGPIFALKWNK-RGNYILSAG-VDKTTIIWDAASG 69 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~--~~~~~---------~~~~~~i~~~~~~~-~~~~~~s~~-~d~~i~~~d~~~~ 69 (131)
+++++++++++...++.|+.|+..++ .+..+ ..+......++++| ++..+++.+ .++.|++|+ .++
T Consensus 97 a~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g 175 (329)
T 3fvz_A 97 SIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG 175 (329)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred EECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence 46788998888888899999998865 44444 23344678999999 888888886 689999999 566
Q ss_pred ceeeeeecCC----------CCeEEEEEcCC-Cc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840 70 QCEQQFSFHS----------APALDVDWQSN-TS-FASCSTDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 70 ~~~~~~~~~~----------~~v~~~~~~~~-~~-~~~~~~d~~i~i~d~~~~~~~~~~~ 117 (131)
+.+..+.... .....++++|+ +. +++...++.|++||..+++.+..+.
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~ 235 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK 235 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence 6666654221 23789999998 77 5666678899999999888877763
No 169
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.34 E-value=8e-11 Score=76.38 Aligned_cols=102 Identities=13% Similarity=0.072 Sum_probs=79.7
Q ss_pred CCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEE
Q psy3840 7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV 85 (131)
Q Consensus 7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~ 85 (131)
++..|+++ .++.|++||+. .........|..++..+.+.+. .++++..||.+.+||+.++.... ....|.++
T Consensus 96 d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v 168 (388)
T 1xip_A 96 HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSF 168 (388)
T ss_dssp ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEE
T ss_pred CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEE
Confidence 78899998 78999999986 2233344556667888776654 38889999999999999876543 34589999
Q ss_pred EEcCCCcEEEEeCCCcEEEEeCCCCee--eEEE
Q psy3840 86 DWQSNTSFASCSTDQHIHVCKLHSDKP--VKSF 116 (131)
Q Consensus 86 ~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~ 116 (131)
+|+|+| ++.+..||.+++|+...++. ..++
T Consensus 169 ~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I 200 (388)
T 1xip_A 169 DVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEF 200 (388)
T ss_dssp EECSSE-EEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred EEcCCc-eEEEEcCCcEEEEcCCCcccccccee
Confidence 999999 77899999999999887764 4455
No 170
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.30 E-value=7.5e-11 Score=81.53 Aligned_cols=108 Identities=7% Similarity=-0.038 Sum_probs=74.2
Q ss_pred cccCCCCEEEE-----EeCCCeEEEEcCCCCceeecccccccE--EEEEEcCCCCEEEEEeCCCc-------------EE
Q psy3840 3 SSRNNGSFLAT-----GSYDGYARIWTSDGSLKSTLGQHKGPI--FALKWNKRGNYILSAGVDKT-------------TI 62 (131)
Q Consensus 3 ~~~~~~~~l~~-----~~~d~~i~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~s~~~d~~-------------i~ 62 (131)
+|||||++|+. |+.+..|++||+.+..... ..+...+ ..++|+|+++.++.++.+.. |+
T Consensus 127 ~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~ 205 (695)
T 2bkl_A 127 AVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIR 205 (695)
T ss_dssp EECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEE
T ss_pred EECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEE
Confidence 58999999994 4445689999998433320 1121222 67899999999999888766 99
Q ss_pred EEECCCcce----eeeeecCCCCeEEEEEcCCCc-EEEEeCCC----cEEEEeCCCCe
Q psy3840 63 IWDAASGQC----EQQFSFHSAPALDVDWQSNTS-FASCSTDQ----HIHVCKLHSDK 111 (131)
Q Consensus 63 ~~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~----~i~i~d~~~~~ 111 (131)
+|++.++.. +.....+...+..+.|+|+++ ++..+.++ .|++++..+++
T Consensus 206 ~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~ 263 (695)
T 2bkl_A 206 YHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD 263 (695)
T ss_dssp EEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS
T ss_pred EEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc
Confidence 999987752 222223345688999999987 66555444 67777765554
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.29 E-value=1.3e-10 Score=79.56 Aligned_cols=105 Identities=9% Similarity=0.013 Sum_probs=77.6
Q ss_pred cCCCCE-EEEEeC-CCeEEEEcCC--C-Cceeeccc-----ccccEEEEEEcCCCCEEEEEeCC----------CcEEEE
Q psy3840 5 RNNGSF-LATGSY-DGYARIWTSD--G-SLKSTLGQ-----HKGPIFALKWNKRGNYILSAGVD----------KTTIIW 64 (131)
Q Consensus 5 ~~~~~~-l~~~~~-d~~i~~~~~~--~-~~~~~~~~-----~~~~i~~~~~~~~~~~~~s~~~d----------~~i~~~ 64 (131)
|||++. |+..+. +..|.++++. + .....+.. |...+..++|+|+|+.++.++.+ ..|++|
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~ 166 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV 166 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence 489998 776654 5667778876 3 55555555 56778899999999999988766 579999
Q ss_pred ECCC------cceeeeee-cCCCCeEEEEEcCCCc-EEEEeCC--------CcEEEEeCC-CC
Q psy3840 65 DAAS------GQCEQQFS-FHSAPALDVDWQSNTS-FASCSTD--------QHIHVCKLH-SD 110 (131)
Q Consensus 65 d~~~------~~~~~~~~-~~~~~v~~~~~~~~~~-~~~~~~d--------~~i~i~d~~-~~ 110 (131)
|+.+ ++. ..+. .+...+..++|+||++ ++..+.+ ..|++||+. ++
T Consensus 167 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g 228 (662)
T 3azo_A 167 PLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG 228 (662)
T ss_dssp ETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred ECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence 9987 544 3444 4445677889999987 6655543 379999998 56
No 172
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.29 E-value=5.9e-11 Score=76.23 Aligned_cols=108 Identities=9% Similarity=0.085 Sum_probs=75.9
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC--CCceeeccccc--ccEEEEEEcCCCCE--EEEEe-------------CCCcEEE
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD--GSLKSTLGQHK--GPIFALKWNKRGNY--ILSAG-------------VDKTTII 63 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~--~~i~~~~~~~~~~~--~~s~~-------------~d~~i~~ 63 (131)
+++|++++|++++.+ .|.+|++. ++..... .+. +....++|+|+++. +++++ .++.+.+
T Consensus 46 a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~-~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v 123 (365)
T 1jof_A 46 TFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA-SHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNV 123 (365)
T ss_dssp EECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE-EEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEE
T ss_pred EECCCCCEEEEEccc-eEEEEEECCCCCEEEee-EeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEE
Confidence 478999999998887 99999974 4433222 121 23455889999994 44553 6889999
Q ss_pred EECC-Ccceeeeee----cCCCCeEEEEEcCCCc-EEEEe-CCCcEEEEeCC-CCee
Q psy3840 64 WDAA-SGQCEQQFS----FHSAPALDVDWQSNTS-FASCS-TDQHIHVCKLH-SDKP 112 (131)
Q Consensus 64 ~d~~-~~~~~~~~~----~~~~~v~~~~~~~~~~-~~~~~-~d~~i~i~d~~-~~~~ 112 (131)
|++. +++....+. .+...+..++|+|+++ +++++ .++.|++||+. +++.
T Consensus 124 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~ 180 (365)
T 1jof_A 124 FSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV 180 (365)
T ss_dssp EEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE
T ss_pred EccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE
Confidence 9997 465443333 1345789999999987 55554 46789999998 6654
No 173
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.29 E-value=2.6e-10 Score=73.26 Aligned_cols=110 Identities=15% Similarity=0.262 Sum_probs=77.6
Q ss_pred cccCCCCE--EEEEe-------------CCCeEEEEcCC--CCceeecc----cccccEEEEEEcCCCCEEEEEeC-CCc
Q psy3840 3 SSRNNGSF--LATGS-------------YDGYARIWTSD--GSLKSTLG----QHKGPIFALKWNKRGNYILSAGV-DKT 60 (131)
Q Consensus 3 ~~~~~~~~--l~~~~-------------~d~~i~~~~~~--~~~~~~~~----~~~~~i~~~~~~~~~~~~~s~~~-d~~ 60 (131)
+++|++++ ++++. .++.+.+|++. ++....+. .+...+..++|+|+|+++++++. ++.
T Consensus 89 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~ 168 (365)
T 1jof_A 89 DADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANK 168 (365)
T ss_dssp CTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred EECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCE
Confidence 47899994 44553 68899999985 44433333 24457899999999998887764 679
Q ss_pred EEEEECC-Cccee--eeeec--CCCCeEEEEEcCCCc-EEEEe-CCCcEEEEeCC--CCee
Q psy3840 61 TIIWDAA-SGQCE--QQFSF--HSAPALDVDWQSNTS-FASCS-TDQHIHVCKLH--SDKP 112 (131)
Q Consensus 61 i~~~d~~-~~~~~--~~~~~--~~~~v~~~~~~~~~~-~~~~~-~d~~i~i~d~~--~~~~ 112 (131)
|++|++. +++.. ..+.. +...+..++|+|+++ +++++ .++.+.+|++. +++.
T Consensus 169 v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~ 229 (365)
T 1jof_A 169 LWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP 229 (365)
T ss_dssp EEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence 9999998 66543 22331 245688999999987 55555 46789999765 4543
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.28 E-value=1.3e-10 Score=73.67 Aligned_cols=114 Identities=8% Similarity=0.143 Sum_probs=85.2
Q ss_pred cccC-CCCEEEEEe-CCCeEEEEcCCCCceeeccc----------ccccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCc
Q psy3840 3 SSRN-NGSFLATGS-YDGYARIWTSDGSLKSTLGQ----------HKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASG 69 (131)
Q Consensus 3 ~~~~-~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~~~s~~~d~~i~~~d~~~~ 69 (131)
+++| +++++++.+ .++.|++|+..+..+..+.. +-.....++++|+ +.++++...++.|++||..++
T Consensus 149 a~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G 228 (329)
T 3fvz_A 149 AVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK 228 (329)
T ss_dssp EECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC
T ss_pred EEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC
Confidence 3567 777777776 58899999987777666542 2234789999998 777777778999999999888
Q ss_pred ceeeeee--cCCCCeEEEEEcCCCc-EEEE-------eCCCcEEEEeCCCCeeeEEEe
Q psy3840 70 QCEQQFS--FHSAPALDVDWQSNTS-FASC-------STDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 70 ~~~~~~~--~~~~~v~~~~~~~~~~-~~~~-------~~d~~i~i~d~~~~~~~~~~~ 117 (131)
+.+..+. .....+..++++| +. +... ..+..+++||..+++.+..+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~ 285 (329)
T 3fvz_A 229 EFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK 285 (329)
T ss_dssp CEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC
T ss_pred cEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc
Confidence 8887774 3445788899999 43 2222 234589999999998888763
No 175
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.26 E-value=2.5e-09 Score=67.55 Aligned_cols=109 Identities=11% Similarity=0.016 Sum_probs=78.0
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCCceeec-ccccccEEEEEEcCCCCEEEEEeCC----CcEEEEECCCcceeeeee-
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTL-GQHKGPIFALKWNKRGNYILSAGVD----KTTIIWDAASGQCEQQFS- 76 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~s~~~d----~~i~~~d~~~~~~~~~~~- 76 (131)
+|++++++++++..++.|.+||..+.....+ ..+...+.+++++|+++++++...+ +.+.+||..+++....+.
T Consensus 51 ~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 130 (333)
T 2dg1_A 51 NFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED 130 (333)
T ss_dssp EECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS
T ss_pred EECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc
Confidence 3678899777888889999999874443333 2456789999999999988887666 689999988776542332
Q ss_pred -cCCCCeEEEEEcCCCcEEEEeC-------CCcEEEEeCCCCe
Q psy3840 77 -FHSAPALDVDWQSNTSFASCST-------DQHIHVCKLHSDK 111 (131)
Q Consensus 77 -~~~~~v~~~~~~~~~~~~~~~~-------d~~i~i~d~~~~~ 111 (131)
.....+..+.++|++.+..++. .+.|..+|..+++
T Consensus 131 ~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~ 173 (333)
T 2dg1_A 131 LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT 173 (333)
T ss_dssp SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC
T ss_pred CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE
Confidence 2335688999999988544443 2467777766544
No 176
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.23 E-value=1e-09 Score=70.65 Aligned_cols=111 Identities=13% Similarity=0.090 Sum_probs=78.9
Q ss_pred cCCCCEEEEEeCCCeEEEEcCCCCceeecc-----c----c----cccEEEEEEcCCCCEEEEEeC-----------CCc
Q psy3840 5 RNNGSFLATGSYDGYARIWTSDGSLKSTLG-----Q----H----KGPIFALKWNKRGNYILSAGV-----------DKT 60 (131)
Q Consensus 5 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~-----~----~----~~~i~~~~~~~~~~~~~s~~~-----------d~~ 60 (131)
++++..++..+.++.|.++|+......... . . ......++++|++..++.+.. .+.
T Consensus 208 ~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~ 287 (361)
T 2oiz_A 208 ALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAE 287 (361)
T ss_dssp EECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSE
T ss_pred cccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCce
Confidence 355666666677888899987632211110 0 0 111123688999887776543 347
Q ss_pred EEEEECCCcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC--eeeEEEec
Q psy3840 61 TIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSD--KPVKSFEG 118 (131)
Q Consensus 61 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~--~~~~~~~~ 118 (131)
+.+||+.+++.+..+..+. +..++|+|+++ +++++. +.|.+||..++ +.+.++..
T Consensus 288 v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~ 345 (361)
T 2oiz_A 288 IWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEG 345 (361)
T ss_dssp EEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETT
T ss_pred EEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEecc
Confidence 9999999999999988765 89999999987 666655 99999999999 99888743
No 177
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.20 E-value=4.6e-10 Score=72.23 Aligned_cols=108 Identities=9% Similarity=0.097 Sum_probs=82.5
Q ss_pred CCCCEEEEEe------CCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEe----------CCCcEEEEECCC
Q psy3840 6 NNGSFLATGS------YDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAG----------VDKTTIIWDAAS 68 (131)
Q Consensus 6 ~~~~~l~~~~------~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~----------~d~~i~~~d~~~ 68 (131)
++++++++.. .|+.|.+||.. ++.+..+..+..+ .++++|+++++++++ .++.|.+||..+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 4667777754 36799999976 6666666665555 899999999988876 256799999998
Q ss_pred cceeeeeecC------CCCeEEEEEcCCCc-EEEEeC--CCcEEEEeCCCCeeeEE
Q psy3840 69 GQCEQQFSFH------SAPALDVDWQSNTS-FASCST--DQHIHVCKLHSDKPVKS 115 (131)
Q Consensus 69 ~~~~~~~~~~------~~~v~~~~~~~~~~-~~~~~~--d~~i~i~d~~~~~~~~~ 115 (131)
.+.+..+... ......++++|+++ ++++.. ++.|.+||+++++.+..
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED 146 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence 8887776532 23567899999987 555543 57899999999988776
No 178
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.19 E-value=1.7e-09 Score=68.59 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=66.0
Q ss_pred cccCCCCEEEEEeCC---Ce--EEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCC-------------------
Q psy3840 3 SSRNNGSFLATGSYD---GY--ARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD------------------- 58 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d---~~--i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d------------------- 58 (131)
.|+|||+.|+..+.+ +. |.+|++.+.....+..+.. +..+.|+|+++.++.++.+
T Consensus 65 ~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g 143 (347)
T 2gop_A 65 RISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDD 143 (347)
T ss_dssp EECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---
T ss_pred EECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecC
Confidence 589999999887754 33 7777877554444444445 8999999999988877632
Q ss_pred --------CcEEEEECCCcceeeeeecCCCCeEEEEEcCCCcEEEEe
Q psy3840 59 --------KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCS 97 (131)
Q Consensus 59 --------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 97 (131)
..+++||+.+++.+..+.. . .+..+.|+|++.++++.
T Consensus 144 ~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~ 188 (347)
T 2gop_A 144 LGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVP 188 (347)
T ss_dssp ------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEE
T ss_pred cccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEe
Confidence 5688999988876445544 3 77889999999333443
No 179
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.18 E-value=1.4e-09 Score=67.66 Aligned_cols=107 Identities=10% Similarity=0.031 Sum_probs=84.9
Q ss_pred CCCEEEEEeCCCeEEEEcC-CCCceeeccccc-ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC-CCeE
Q psy3840 7 NGSFLATGSYDGYARIWTS-DGSLKSTLGQHK-GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS-APAL 83 (131)
Q Consensus 7 ~~~~l~~~~~d~~i~~~~~-~~~~~~~~~~~~-~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~ 83 (131)
.+++|++++.++.|.+||. .|+.+.++..+. ..+.++.++|+|+.++ +.++.++.||. +++.+..+.... ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 4688999999999999998 588888887765 4678899999999888 45778999998 899888887643 4678
Q ss_pred EEEEcCCCc-EEEEeC-CCcEEEEeCCCCeeeEEEe
Q psy3840 84 DVDWQSNTS-FASCST-DQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 84 ~~~~~~~~~-~~~~~~-d~~i~i~d~~~~~~~~~~~ 117 (131)
+..+.+++. +++.+. ++.+..+|. +++.+.++.
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~ 115 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTE 115 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEe
Confidence 888999988 555555 667877775 677766654
No 180
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.17 E-value=1.9e-09 Score=67.05 Aligned_cols=113 Identities=14% Similarity=0.170 Sum_probs=88.3
Q ss_pred ccCCCCEEEEEeC-CCeEEEEcCCCCceeecc------cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee
Q psy3840 4 SRNNGSFLATGSY-DGYARIWTSDGSLKSTLG------QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS 76 (131)
Q Consensus 4 ~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~ 76 (131)
+.++|+.+++.+. ++.|..++..++.+..+. .+......++..++++++++...++.+..||.. ++.+..+.
T Consensus 84 ~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~ 162 (276)
T 3no2_A 84 ILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVK 162 (276)
T ss_dssp ECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE
T ss_pred ECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEE
Confidence 5688999999887 778888888787766543 122344556788999999999999999999987 99888887
Q ss_pred cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840 77 FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 77 ~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~ 118 (131)
.. ..+......+++. ++++..++.|..+|..+++.+.++..
T Consensus 163 ~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 163 LS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA 204 (276)
T ss_dssp CS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred CC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence 64 3455677788877 66666777899999999999888864
No 181
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.17 E-value=4.6e-09 Score=71.36 Aligned_cols=110 Identities=13% Similarity=0.081 Sum_probs=84.3
Q ss_pred CCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECC--CcceeeeeecCCCCe
Q psy3840 6 NNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA--SGQCEQQFSFHSAPA 82 (131)
Q Consensus 6 ~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~--~~~~~~~~~~~~~~v 82 (131)
+.+..+++...++.|.++|.. ++.+.++.. ......+.++|+++++++++.++.+.+||+. +++.+..+... ...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCC
Confidence 334456666678999999987 555555543 3356789999999999999999999999996 77777777653 346
Q ss_pred EEEEEc----CCCc-E-EEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840 83 LDVDWQ----SNTS-F-ASCSTDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 83 ~~~~~~----~~~~-~-~~~~~d~~i~i~d~~~~~~~~~~~ 117 (131)
..++++ |+++ + ++...++.+.++|..+.+.+..+.
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~ 283 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 283 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEe
Confidence 789999 6887 4 455567899999999998887765
No 182
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.16 E-value=3.2e-10 Score=72.90 Aligned_cols=114 Identities=11% Similarity=-0.010 Sum_probs=75.3
Q ss_pred cccCCCCEEEEEeCC---CeEEEEcCCCCceeecccccccE-EEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC
Q psy3840 3 SSRNNGSFLATGSYD---GYARIWTSDGSLKSTLGQHKGPI-FALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH 78 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d---~~i~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~ 78 (131)
+|+|+|++|+..... ..|.+|++.+.....+..+.... ..+.|+|+++.++..+.++.+++||+.+++.......+
T Consensus 42 ~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~ 121 (396)
T 3c5m_A 42 CFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVD 121 (396)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred cCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecc
Confidence 489999998877543 36888898755544444433332 23789999999999999989999999888765444433
Q ss_pred CCCeEE-------------------EEEcCCCc-EEEE-----eCCCcEEEEeCCCCeeeEEE
Q psy3840 79 SAPALD-------------------VDWQSNTS-FASC-----STDQHIHVCKLHSDKPVKSF 116 (131)
Q Consensus 79 ~~~v~~-------------------~~~~~~~~-~~~~-----~~d~~i~i~d~~~~~~~~~~ 116 (131)
...... ..++|++. ++.. ..+..|++||+.+++.....
T Consensus 122 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~ 184 (396)
T 3c5m_A 122 EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH 184 (396)
T ss_dssp TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE
T ss_pred cccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec
Confidence 221111 24566655 3322 35568999999887654443
No 183
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.15 E-value=1.3e-09 Score=75.86 Aligned_cols=107 Identities=12% Similarity=0.132 Sum_probs=72.5
Q ss_pred cccCCCCEEEEEeCC-----CeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCc--------------EEE
Q psy3840 3 SSRNNGSFLATGSYD-----GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKT--------------TII 63 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d-----~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~--------------i~~ 63 (131)
+|||||++|+.+..+ ..|++||+.+........+...+..++|+|+ +.++.+..++. |++
T Consensus 169 ~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~ 247 (741)
T 1yr2_A 169 AASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWL 247 (741)
T ss_dssp EECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEE
T ss_pred EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEE
Confidence 589999999887654 3599999984443322222222357899999 98888776544 889
Q ss_pred EECCCcce--eeeeec--CCCCeEEEEEcCCCc-EEEEeC-----CCcEEEEeCCCC
Q psy3840 64 WDAASGQC--EQQFSF--HSAPALDVDWQSNTS-FASCST-----DQHIHVCKLHSD 110 (131)
Q Consensus 64 ~d~~~~~~--~~~~~~--~~~~v~~~~~~~~~~-~~~~~~-----d~~i~i~d~~~~ 110 (131)
|++.++.. ...+.. +...+..+.|+|+++ ++.... ...|++||+.++
T Consensus 248 ~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 248 HRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp EETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred EECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 99877652 122222 223478899999987 555443 347999999876
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.12 E-value=1.3e-08 Score=63.43 Aligned_cols=115 Identities=13% Similarity=0.110 Sum_probs=79.6
Q ss_pred ccCCCCEEEEE----e-------------CCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy3840 4 SRNNGSFLATG----S-------------YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66 (131)
Q Consensus 4 ~~~~~~~l~~~----~-------------~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~ 66 (131)
++|+|+++++. . ..+.|..++..++ ...+..+......++|+|+++.+++...++.+.+|++
T Consensus 122 ~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~ 200 (296)
T 3e5z_A 122 LAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCL 200 (296)
T ss_dssp ECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEE
T ss_pred ECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEE
Confidence 57888888763 2 1345666665533 3344455566789999999998877777899999998
Q ss_pred C-Ccce---eeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccc
Q psy3840 67 A-SGQC---EQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTR 121 (131)
Q Consensus 67 ~-~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 121 (131)
. +++. ...+......+..+++++++.+..+. ++.|.+||.. ++.+..+..+..
T Consensus 201 ~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~~~~~~ 257 (296)
T 3e5z_A 201 NARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGRVLTPQT 257 (296)
T ss_dssp CSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEEEECSSC
T ss_pred CCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEEEECCCC
Confidence 7 4443 22332234456789999999865555 7889999986 777777765554
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.10 E-value=6.7e-09 Score=65.86 Aligned_cols=104 Identities=11% Similarity=0.167 Sum_probs=72.7
Q ss_pred CCCEEEEEe---------CCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCC---C--cEEEEECCCccee
Q psy3840 7 NGSFLATGS---------YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD---K--TTIIWDAASGQCE 72 (131)
Q Consensus 7 ~~~~l~~~~---------~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d---~--~i~~~d~~~~~~~ 72 (131)
+|+.++... .++.|.+|++.+.....+ ..+..++|+|+|+.++..+.+ + .+.+|++.+++..
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~ 98 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK 98 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE
Confidence 677776642 255788999875444444 567889999999988877653 3 3778888887765
Q ss_pred eeeecCCCCeEEEEEcCCCc-EEEEeC---------------------------CCcEEEEeCCCCeeeEEE
Q psy3840 73 QQFSFHSAPALDVDWQSNTS-FASCST---------------------------DQHIHVCKLHSDKPVKSF 116 (131)
Q Consensus 73 ~~~~~~~~~v~~~~~~~~~~-~~~~~~---------------------------d~~i~i~d~~~~~~~~~~ 116 (131)
...... . +..+.|+|+++ ++..+. ...|++||+.+++.+..+
T Consensus 99 ~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l 168 (347)
T 2gop_A 99 KILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEF 168 (347)
T ss_dssp EEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEE
T ss_pred EEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeee
Confidence 444433 3 89999999987 665542 246899999988763443
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.10 E-value=7.3e-09 Score=64.56 Aligned_cols=92 Identities=15% Similarity=0.042 Sum_probs=70.4
Q ss_pred cccCCCC-EEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec----
Q psy3840 3 SSRNNGS-FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF---- 77 (131)
Q Consensus 3 ~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~---- 77 (131)
.|+|+++ +++++..++.|..|+..+. ...+..+...+..++++|+++++++...++.|.+||..+++.......
T Consensus 34 ~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~ 112 (296)
T 3e5z_A 34 VYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGK 112 (296)
T ss_dssp EEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTE
T ss_pred eEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCC
Confidence 4788888 7778888999999998866 666666777889999999999888877788999999987765433221
Q ss_pred CCCCeEEEEEcCCCcEEE
Q psy3840 78 HSAPALDVDWQSNTSFAS 95 (131)
Q Consensus 78 ~~~~v~~~~~~~~~~~~~ 95 (131)
....+..++++|++++..
T Consensus 113 ~~~~~~~i~~d~~G~l~v 130 (296)
T 3e5z_A 113 KLNSPNDVCLAPDGSLWF 130 (296)
T ss_dssp ECCCCCCEEECTTSCEEE
T ss_pred CCCCCCCEEECCCCCEEE
Confidence 123467799999988543
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.09 E-value=2.1e-08 Score=68.21 Aligned_cols=114 Identities=11% Similarity=0.099 Sum_probs=83.0
Q ss_pred cccCCCCEEEEEeCCCeEEEEcC---CCCceeecccccccEEEEEEc----CCCCEEEEEeC-CCcEEEEECCCcceeee
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTS---DGSLKSTLGQHKGPIFALKWN----KRGNYILSAGV-DKTTIIWDAASGQCEQQ 74 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~---~~~~~~~~~~~~~~i~~~~~~----~~~~~~~s~~~-d~~i~~~d~~~~~~~~~ 74 (131)
.++||++++++++.++.|.+||+ .++.+.++.... ....++|+ |+|+++++++. ++++.++|..+.+.+..
T Consensus 203 ~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~ 281 (567)
T 1qks_A 203 RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI 281 (567)
T ss_dssp EECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEE
Confidence 47999999999999999999998 355555555433 35789999 69998887765 68999999888766654
Q ss_pred eecCC-------------------------------------------------------CCeEEEEEcCCCc-E-EEEe
Q psy3840 75 FSFHS-------------------------------------------------------APALDVDWQSNTS-F-ASCS 97 (131)
Q Consensus 75 ~~~~~-------------------------------------------------------~~v~~~~~~~~~~-~-~~~~ 97 (131)
+.... .....+.|+|+++ + ++..
T Consensus 282 i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~ 361 (567)
T 1qks_A 282 QSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN 361 (567)
T ss_dssp EECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG
T ss_pred EeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC
Confidence 43110 0123457888877 4 4455
Q ss_pred CCCcEEEEeCCCCeeeEEEe
Q psy3840 98 TDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 98 ~d~~i~i~d~~~~~~~~~~~ 117 (131)
.++.|.++|+++++.+..+.
T Consensus 362 ~sn~V~ViD~~t~kl~~~i~ 381 (567)
T 1qks_A 362 ARNKLVVIDTKEGKLVAIED 381 (567)
T ss_dssp GGTEEEEEETTTTEEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEe
Confidence 67889999999988766554
No 188
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.07 E-value=6.1e-09 Score=67.66 Aligned_cols=105 Identities=10% Similarity=0.063 Sum_probs=79.6
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC--C---------CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcce
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD--G---------SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC 71 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~--~---------~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~ 71 (131)
++++...++++|+.++ +.+|+++ . -.......+.. |..++| ++.+++++ .++.+++||+++...
T Consensus 44 ais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~ 118 (388)
T 1xip_A 44 DISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSE 118 (388)
T ss_dssp EEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTC
T ss_pred EEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhc
Confidence 5678889999998874 6669754 1 01112234556 999999 89999998 889999999987666
Q ss_pred eeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeee
Q psy3840 72 EQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPV 113 (131)
Q Consensus 72 ~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~ 113 (131)
......+..++.++.+.+.. ++++..||.+.+||+++++..
T Consensus 119 ~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~ 159 (388)
T 1xip_A 119 FRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTK 159 (388)
T ss_dssp EEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEE
T ss_pred cCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCccc
Confidence 55666667778888876653 888999999999999977654
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.07 E-value=9.1e-09 Score=63.08 Aligned_cols=108 Identities=9% Similarity=0.045 Sum_probs=78.4
Q ss_pred ccCCCCEEEEEeCCCeEEEEcCCCCceeec-ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840 4 SRNNGSFLATGSYDGYARIWTSDGSLKSTL-GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA 82 (131)
Q Consensus 4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v 82 (131)
++++++++++...++.|..|+..+...... ......+..+++++++..+++...++.|..|+................+
T Consensus 157 ~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p 236 (270)
T 1rwi_B 157 VDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTP 236 (270)
T ss_dssp ECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCE
T ss_pred EeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCc
Confidence 567888777666678999999875443322 2233567899999999888888788999999987654332222223568
Q ss_pred EEEEEcCCCc-EEEEeCCCcEEEEeCCCCe
Q psy3840 83 LDVDWQSNTS-FASCSTDQHIHVCKLHSDK 111 (131)
Q Consensus 83 ~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~ 111 (131)
..+++++++. +++...++.|+++++...+
T Consensus 237 ~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 237 LAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred eeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 8999999988 5677778999999987544
No 190
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.07 E-value=6.9e-09 Score=67.30 Aligned_cols=113 Identities=7% Similarity=0.021 Sum_probs=86.5
Q ss_pred ccCCCCEEEEEeC-----CCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEe----------CCCcEEEEECC
Q psy3840 4 SRNNGSFLATGSY-----DGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAG----------VDKTTIIWDAA 67 (131)
Q Consensus 4 ~~~~~~~l~~~~~-----d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~----------~d~~i~~~d~~ 67 (131)
..|+++.+++... ++.|.++|.. ++.+.++.....+ . ++++|+++.++.++ .++.+.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 4689999988876 5789999987 5666666544445 4 99999999887765 36789999999
Q ss_pred CcceeeeeecCC-------CCeEEEEEcCCCc-EEEEe--CCCcEEEEeCCCCeeeEEEec
Q psy3840 68 SGQCEQQFSFHS-------APALDVDWQSNTS-FASCS--TDQHIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 68 ~~~~~~~~~~~~-------~~v~~~~~~~~~~-~~~~~--~d~~i~i~d~~~~~~~~~~~~ 118 (131)
+.+.+..+.... .....+.++|+++ ++.+. .++.|.++|+.+++.+.++..
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v 178 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV 178 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC
Confidence 999888775321 2466799999987 55444 368899999999998888753
No 191
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.04 E-value=1.9e-09 Score=68.08 Aligned_cols=109 Identities=8% Similarity=0.067 Sum_probs=80.6
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA 82 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v 82 (131)
.|++++..++..+.++.++.| .++....+..+...+.+++|+|++++++++..++.|.+||..+++...........+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 89 (333)
T 2dg1_A 12 FYSGKSNSAVPIISESELQTI--TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANP 89 (333)
T ss_dssp CSCGGGGCSSCCCCGGGSCEE--ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSE
T ss_pred eecCCccceeEEeecccCccc--ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCc
Confidence 356666666666667778888 345555566666677999999999988888889999999998877554443445679
Q ss_pred EEEEEcCCCcE-EEEeCC----CcEEEEeCCCCeee
Q psy3840 83 LDVDWQSNTSF-ASCSTD----QHIHVCKLHSDKPV 113 (131)
Q Consensus 83 ~~~~~~~~~~~-~~~~~d----~~i~i~d~~~~~~~ 113 (131)
..++++|++++ ++...+ +.|.+||.+++...
T Consensus 90 ~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~ 125 (333)
T 2dg1_A 90 AAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ 125 (333)
T ss_dssp EEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred ceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE
Confidence 99999999885 444444 58999998876543
No 192
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.02 E-value=4e-08 Score=60.22 Aligned_cols=108 Identities=8% Similarity=-0.007 Sum_probs=75.6
Q ss_pred ccCCCCEEEEEeCCCeEEEEcCCCCceeeccc-ccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840 4 SRNNGSFLATGSYDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA 82 (131)
Q Consensus 4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v 82 (131)
++++++++++.. ++.|..||..+.....+.. ....+..++++++++.+++...++.+..|+..+.............+
T Consensus 74 ~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p 152 (270)
T 1rwi_B 74 VDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDP 152 (270)
T ss_dssp ECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSC
T ss_pred ECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCc
Confidence 567778555554 8899999988655544432 22567899999999988887778899999765544332222222456
Q ss_pred EEEEEcCCCcE-EEEeCCCcEEEEeCCCCee
Q psy3840 83 LDVDWQSNTSF-ASCSTDQHIHVCKLHSDKP 112 (131)
Q Consensus 83 ~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~ 112 (131)
..+++++++++ ++...++.|.+||......
T Consensus 153 ~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 153 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred eeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 78999998884 5555678999999876544
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.00 E-value=5.2e-08 Score=61.86 Aligned_cols=116 Identities=4% Similarity=-0.066 Sum_probs=81.1
Q ss_pred ccCCCCEEEEEeCC----------CeEEEEcCC-CCceeecccc-cccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcce
Q psy3840 4 SRNNGSFLATGSYD----------GYARIWTSD-GSLKSTLGQH-KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC 71 (131)
Q Consensus 4 ~~~~~~~l~~~~~d----------~~i~~~~~~-~~~~~~~~~~-~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~ 71 (131)
++++|++++++..+ +.|.++|.. ++....+... ......++++|+++.++.+.. .+.+||..+++.
T Consensus 179 ~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 179 MDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp ECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred EcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence 57788877666544 789999987 4444343321 235789999999998888765 899999988775
Q ss_pred eee--eecCCCCeEEEEEcC-CCcE-EEE----eCCCcEEEEeCCCCeeeEEEecccce
Q psy3840 72 EQQ--FSFHSAPALDVDWQS-NTSF-ASC----STDQHIHVCKLHSDKPVKSFEGHTRV 122 (131)
Q Consensus 72 ~~~--~~~~~~~v~~~~~~~-~~~~-~~~----~~d~~i~i~d~~~~~~~~~~~~~~~~ 122 (131)
... +.........++++| ++.+ ++. ..++.|.+||.. ++.+.++..-..+
T Consensus 257 ~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P 314 (328)
T 3dsm_A 257 PVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIP 314 (328)
T ss_dssp CSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESE
T ss_pred eeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCc
Confidence 321 111135678999999 4664 554 467899999998 8888887643333
No 194
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.99 E-value=1.4e-08 Score=65.18 Aligned_cols=95 Identities=9% Similarity=0.069 Sum_probs=71.9
Q ss_pred CCceeecccccccEEE-----EEEcCCCCEEEEEeC-CC--cEEEEECCCcceeeeeecCCCCeEEEEEcCCCc-EEEEe
Q psy3840 27 GSLKSTLGQHKGPIFA-----LKWNKRGNYILSAGV-DK--TTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCS 97 (131)
Q Consensus 27 ~~~~~~~~~~~~~i~~-----~~~~~~~~~~~s~~~-d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~ 97 (131)
+..+..+..+...... .+|+|+|+.++..+. ++ .+.+||+.+++.......+...+....|+|+++ |+.+.
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~ 99 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVK 99 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEE
T ss_pred CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEe
Confidence 6667777777665555 789999999888877 66 388889988877665555544555678999987 88888
Q ss_pred CCCcEEEEeCCCCeeeEEEecccc
Q psy3840 98 TDQHIHVCKLHSDKPVKSFEGHTR 121 (131)
Q Consensus 98 ~d~~i~i~d~~~~~~~~~~~~~~~ 121 (131)
.++.+++||+.+++.......+..
T Consensus 100 ~~~~l~~~d~~~g~~~~~~~~~~~ 123 (388)
T 3pe7_A 100 DGRNLMRVDLATLEENVVYQVPAE 123 (388)
T ss_dssp TTTEEEEEETTTCCEEEEEECCTT
T ss_pred CCCeEEEEECCCCcceeeeechhh
Confidence 888999999999887665554443
No 195
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.92 E-value=5.4e-08 Score=63.71 Aligned_cols=108 Identities=16% Similarity=0.104 Sum_probs=77.4
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCC--cEEEEECCCcceeeee----e
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK--TTIIWDAASGQCEQQF----S 76 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~--~i~~~d~~~~~~~~~~----~ 76 (131)
+++++++++++...++.|+.||..+..+..+........ ++|+|++..+++++.++ .+..++...+.....+ .
T Consensus 137 a~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~ 215 (409)
T 3hrp_A 137 AAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGS 215 (409)
T ss_dssp EECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCT
T ss_pred EEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccc
Confidence 367888877777667899999988555444433233334 89999999988888765 7888888765543333 2
Q ss_pred cCCCCeEEEEEcC-CCcEEEEeCCCcEEEEeCCCCe
Q psy3840 77 FHSAPALDVDWQS-NTSFASCSTDQHIHVCKLHSDK 111 (131)
Q Consensus 77 ~~~~~v~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~ 111 (131)
.....+..++++| ++.++.+..++.|+.||..++.
T Consensus 216 ~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~ 251 (409)
T 3hrp_A 216 TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE 251 (409)
T ss_dssp TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC
T ss_pred hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC
Confidence 1345678899999 5776667778899999998765
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.92 E-value=1.5e-07 Score=61.00 Aligned_cols=110 Identities=7% Similarity=-0.020 Sum_probs=79.6
Q ss_pred cCCCCEEEEEeC--CC---eEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEe----------CCCcEEEEECCC
Q psy3840 5 RNNGSFLATGSY--DG---YARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAG----------VDKTTIIWDAAS 68 (131)
Q Consensus 5 ~~~~~~l~~~~~--d~---~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~----------~d~~i~~~d~~~ 68 (131)
.|+++++++... .. .|.++|.. ++.+.++.....+ .++++|+++.++.+. .++.+.++|..+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 467788877653 22 78999986 5655555543344 899999999988876 367899999998
Q ss_pred cceeeeeecC-------CCCeEEEEEcCCCc-EEEEeC--CCcEEEEeCCCCeeeEE-Ee
Q psy3840 69 GQCEQQFSFH-------SAPALDVDWQSNTS-FASCST--DQHIHVCKLHSDKPVKS-FE 117 (131)
Q Consensus 69 ~~~~~~~~~~-------~~~v~~~~~~~~~~-~~~~~~--d~~i~i~d~~~~~~~~~-~~ 117 (131)
.+.+..+... ......+.++|+++ ++.+.. ++.|.++| .+++.+.. +.
T Consensus 107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~ 165 (373)
T 2mad_H 107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS 165 (373)
T ss_pred CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC
Confidence 8877766432 12345789999987 555543 57899999 99888777 53
No 197
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.91 E-value=5e-08 Score=62.68 Aligned_cols=107 Identities=12% Similarity=0.051 Sum_probs=68.1
Q ss_pred cccCCCCEEEEEeCC-----CeEEEEcCCCCceeecccccccEEEEEEcC-CCCEEEEEe----------------CCCc
Q psy3840 3 SSRNNGSFLATGSYD-----GYARIWTSDGSLKSTLGQHKGPIFALKWNK-RGNYILSAG----------------VDKT 60 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d-----~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~----------------~d~~ 60 (131)
.|+|+++.|+.++.+ +.|.+||+.......+....+ .. +.|+| +++.++.++ .+..
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~ 321 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPF 321 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCE
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCc
Confidence 589999988777554 449999987443333322222 23 88999 999888754 3468
Q ss_pred EEEEECCCcceeeeeecCCC-----------CeEEEEEcCCCc-EEEEe-CCCc--EEEEeCCCCee
Q psy3840 61 TIIWDAASGQCEQQFSFHSA-----------PALDVDWQSNTS-FASCS-TDQH--IHVCKLHSDKP 112 (131)
Q Consensus 61 i~~~d~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~-~~~~~-~d~~--i~i~d~~~~~~ 112 (131)
+++||+.+++.. .+..+.. .+..+.|+|+++ ++..+ .++. ++..++.+++.
T Consensus 322 i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 322 LYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp EEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred EEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 999999877643 3433333 256678999986 55444 3444 55556555543
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.90 E-value=1.3e-07 Score=60.07 Aligned_cols=108 Identities=6% Similarity=-0.141 Sum_probs=76.4
Q ss_pred CEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC-----CCe
Q psy3840 9 SFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS-----APA 82 (131)
Q Consensus 9 ~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~-----~~v 82 (131)
...++...++.|.++|.. ++.+.++. .......++++++++.+++...++.+.+||+.+++....+.... ...
T Consensus 55 ~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p 133 (328)
T 3dsm_A 55 IGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGST 133 (328)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBC
T ss_pred EEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCc
Confidence 344444557899999987 66666664 34567899998888655555478999999999988776665432 134
Q ss_pred EEEEEcCCCcEEEEe--CCCcEEEEeCCCCeeeEEEec
Q psy3840 83 LDVDWQSNTSFASCS--TDQHIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 83 ~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~ 118 (131)
..+++ .++++..+. .++.|.++|+++++.+..+..
T Consensus 134 ~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~ 170 (328)
T 3dsm_A 134 EQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI 170 (328)
T ss_dssp CCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC
T ss_pred ceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc
Confidence 56666 456654444 478999999999988777653
No 199
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.87 E-value=2.1e-07 Score=64.65 Aligned_cols=119 Identities=8% Similarity=-0.069 Sum_probs=80.0
Q ss_pred cccCCCCEEEEEeC-----CCeEEEEcCCC------C--ceeecccccccEEEEEEcCCCCEEEEEeCC----CcEEEEE
Q psy3840 3 SSRNNGSFLATGSY-----DGYARIWTSDG------S--LKSTLGQHKGPIFALKWNKRGNYILSAGVD----KTTIIWD 65 (131)
Q Consensus 3 ~~~~~~~~l~~~~~-----d~~i~~~~~~~------~--~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d----~~i~~~d 65 (131)
.|+|||++|+..+. +..|.+||+.. . ....+..+...+.. .|+|++..++..+.. +.|.+||
T Consensus 239 ~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d 317 (710)
T 2xdw_A 239 ELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINID 317 (710)
T ss_dssp EECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEE
T ss_pred EEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEe
Confidence 47999999988765 56799999764 2 34555556555554 478888877655543 3589999
Q ss_pred CCCcc--eeeeeecCCC--CeEEEEEcCCCc-EEEEeCCC--cEEEEeCCCCeeeEEEecccce
Q psy3840 66 AASGQ--CEQQFSFHSA--PALDVDWQSNTS-FASCSTDQ--HIHVCKLHSDKPVKSFEGHTRV 122 (131)
Q Consensus 66 ~~~~~--~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~ 122 (131)
+.++. ....+..+.. .+..+.|++++. +++...++ .|++||+.+++.+..+..+...
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~ 381 (710)
T 2xdw_A 318 FTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGS 381 (710)
T ss_dssp TTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSE
T ss_pred CCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCce
Confidence 98764 2334444433 577888887766 66777777 4677888778776766655433
No 200
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.86 E-value=6.1e-08 Score=67.25 Aligned_cols=114 Identities=11% Similarity=0.115 Sum_probs=72.0
Q ss_pred cccCCCCEEEEEe-----CCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCC-------------cEEEE
Q psy3840 3 SSRNNGSFLATGS-----YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK-------------TTIIW 64 (131)
Q Consensus 3 ~~~~~~~~l~~~~-----~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~-------------~i~~~ 64 (131)
+|||||++++.+. ....|+++|+.+...............++|+ |++.++.+..+. .|++|
T Consensus 135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~ 213 (693)
T 3iuj_A 135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFH 213 (693)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEE
T ss_pred EECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEE
Confidence 5899999998543 2346999999843322221111123577899 999988887764 38999
Q ss_pred ECCCcce--eeeee--c-CCCCeEEEEEcCCCc-E-EEEe---CCCcEEEEeCCCCe-eeEEEe
Q psy3840 65 DAASGQC--EQQFS--F-HSAPALDVDWQSNTS-F-ASCS---TDQHIHVCKLHSDK-PVKSFE 117 (131)
Q Consensus 65 d~~~~~~--~~~~~--~-~~~~v~~~~~~~~~~-~-~~~~---~d~~i~i~d~~~~~-~~~~~~ 117 (131)
++.++.. ...+. . +......+.|+|+++ + ++.. .++.++++|+.++. ....+.
T Consensus 214 ~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~ 277 (693)
T 3iuj_A 214 RLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ 277 (693)
T ss_dssp ETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE
T ss_pred ECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe
Confidence 9877542 22222 2 233467889999987 4 3332 23589999987663 334443
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.84 E-value=3.3e-07 Score=57.22 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=75.1
Q ss_pred ccCCCCEEEEEeCC---------------CeEEEEcCCCCceeecccccccEEEEEEc----CCCCEEEEE-eCCCcEEE
Q psy3840 4 SRNNGSFLATGSYD---------------GYARIWTSDGSLKSTLGQHKGPIFALKWN----KRGNYILSA-GVDKTTII 63 (131)
Q Consensus 4 ~~~~~~~l~~~~~d---------------~~i~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~s~-~~d~~i~~ 63 (131)
+++++++.++...+ +.|..++..++. ..+..+......++++ |+++.++.+ ..++.+..
T Consensus 124 ~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~ 202 (314)
T 1pjx_A 124 FDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWS 202 (314)
T ss_dssp ECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEE
T ss_pred ECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCE-EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEE
Confidence 46777777666544 467777766433 2333334456788999 998655544 56789999
Q ss_pred EECC-Ccc-----eeeeeecCC-CCeEEEEEcCCCcE-EEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840 64 WDAA-SGQ-----CEQQFSFHS-APALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGH 119 (131)
Q Consensus 64 ~d~~-~~~-----~~~~~~~~~-~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~~ 119 (131)
||+. +++ ....+..+. ..+..+++++++.+ ++...++.|.+||.++++.+..+..+
T Consensus 203 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~ 266 (314)
T 1pjx_A 203 YDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP 266 (314)
T ss_dssp EEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS
T ss_pred EECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC
Confidence 9976 343 122222222 45788999999884 55556789999999877766666544
No 202
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.83 E-value=3e-10 Score=73.30 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=59.3
Q ss_pred CCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCC-CeE-
Q psy3840 7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA-PAL- 83 (131)
Q Consensus 7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~-~v~- 83 (131)
++..+++++.|+.|+.||.. |+.+..+.. +.+.+..+..++..+++++.|+.++.||..+++.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 67899999999999999976 777777665 4444444556777788888999999999988887655542210 000
Q ss_pred EEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840 84 DVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH 119 (131)
Q Consensus 84 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 119 (131)
+.....++.+++++.++.++.||.++|+.+..+..+
T Consensus 86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~ 121 (369)
T 2hz6_A 86 SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSA 121 (369)
T ss_dssp CSCC-----CCCCEEEEEEEEECCC-----------
T ss_pred CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCC
Confidence 001112345666777778888888888776665443
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.83 E-value=1.1e-07 Score=62.52 Aligned_cols=111 Identities=6% Similarity=-0.019 Sum_probs=83.1
Q ss_pred CCCCEEEEEeCC-----CeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCc
Q psy3840 6 NNGSFLATGSYD-----GYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAG----------VDKTTIIWDAASG 69 (131)
Q Consensus 6 ~~~~~l~~~~~d-----~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~----------~d~~i~~~d~~~~ 69 (131)
++++.+++.... +.|.++|.. .+.+.++..-..+ .+.++|+++.++.+. .++.+.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 567777776653 689999987 5666666544445 899999999887775 3678999999999
Q ss_pred ceeeeeecC-------CCCeEEEEEcCCCc-EEEEeC--CCcEEEEeCCCCeeeEEEec
Q psy3840 70 QCEQQFSFH-------SAPALDVDWQSNTS-FASCST--DQHIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 70 ~~~~~~~~~-------~~~v~~~~~~~~~~-~~~~~~--d~~i~i~d~~~~~~~~~~~~ 118 (131)
+.+..+... ......+.++|+++ ++.+.. ++.|.+.|+.+++.+.++..
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v 218 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV 218 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence 888777532 13456789999987 555543 57899999999988877754
No 204
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.81 E-value=5.1e-07 Score=62.63 Aligned_cols=107 Identities=7% Similarity=-0.041 Sum_probs=72.7
Q ss_pred cccCCCCEEEEEeCCCe-------------EEEEcCCCC-----ceeecccccccEEEEEEcCCCCEEEEEeCCC----c
Q psy3840 3 SSRNNGSFLATGSYDGY-------------ARIWTSDGS-----LKSTLGQHKGPIFALKWNKRGNYILSAGVDK----T 60 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~-------------i~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~----~ 60 (131)
+|+|||+.|+.++.+.. |++|++... .+.....+...+..+.|+|+|++++..+.++ .
T Consensus 174 ~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~ 253 (695)
T 2bkl_A 174 KWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEND 253 (695)
T ss_dssp EECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEE
T ss_pred EEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceE
Confidence 58999999999988765 999998732 2223334556788999999999888776655 6
Q ss_pred EEEEECCCcceeeeeecCCCCeEEEEEcCCCcEEEEeC----CCcEEEEeCCCCe
Q psy3840 61 TIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCST----DQHIHVCKLHSDK 111 (131)
Q Consensus 61 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----d~~i~i~d~~~~~ 111 (131)
+++++..+++ ...+..+...+....+ +++.++..+. ++.|.+||+.+++
T Consensus 254 l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 254 VYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp EEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred EEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence 7777665554 3444444445555556 4444544332 5789999998764
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.80 E-value=3.4e-07 Score=57.18 Aligned_cols=104 Identities=6% Similarity=0.068 Sum_probs=76.3
Q ss_pred CCCCEEEEE-eCCCeEEEEcCC--CC-----ceeeccccc-ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee
Q psy3840 6 NNGSFLATG-SYDGYARIWTSD--GS-----LKSTLGQHK-GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS 76 (131)
Q Consensus 6 ~~~~~l~~~-~~d~~i~~~~~~--~~-----~~~~~~~~~-~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~ 76 (131)
++++.++.+ ..++.|.+|+.. ++ ....+..+. .....++++++++++++...++.|..||..+++.+..+.
T Consensus 185 ~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~ 264 (314)
T 1pjx_A 185 GRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR 264 (314)
T ss_dssp SCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE
T ss_pred CCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe
Confidence 778666555 457889999864 32 122233333 557889999999998888888999999998777766666
Q ss_pred cCCCCeEEEEEcCCCc-EEE-EeCCCcEEEEeCCC
Q psy3840 77 FHSAPALDVDWQSNTS-FAS-CSTDQHIHVCKLHS 109 (131)
Q Consensus 77 ~~~~~v~~~~~~~~~~-~~~-~~~d~~i~i~d~~~ 109 (131)
.+...+.+++++|++. +.. ...++.|..|++..
T Consensus 265 ~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 265 CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 6557789999999987 544 44567899999864
No 206
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.79 E-value=1.2e-06 Score=54.71 Aligned_cols=123 Identities=10% Similarity=0.084 Sum_probs=77.4
Q ss_pred ccCCCCEEEEEeC-----------CCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEE-EeCCCcEEEEEC--CCc
Q psy3840 4 SRNNGSFLATGSY-----------DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILS-AGVDKTTIIWDA--ASG 69 (131)
Q Consensus 4 ~~~~~~~l~~~~~-----------d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s-~~~d~~i~~~d~--~~~ 69 (131)
++|+|++.++... .+.|..++..++.. .+.........++|+|+++.++. .+.++.|..|++ .++
T Consensus 105 ~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G 183 (297)
T 3g4e_A 105 VDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTG 183 (297)
T ss_dssp ECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTC
T ss_pred ECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE-EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCC
Confidence 5678886665422 12344444434332 23333345678999999986654 455788999987 444
Q ss_pred ce-----eeeeecCCCCeEEEEEcCCCcE-EEEeCCCcEEEEeCCCCeeeEEEeccc-ceEEEEe
Q psy3840 70 QC-----EQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT-RVYYLAM 127 (131)
Q Consensus 70 ~~-----~~~~~~~~~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~ 127 (131)
.. ...+......+..+++++++.+ ++...++.|..||..+++.+..+..+. .+...++
T Consensus 184 ~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f 248 (297)
T 3g4e_A 184 QISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCF 248 (297)
T ss_dssp CEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEE
T ss_pred cccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEE
Confidence 32 1222223345788999999884 555566789999999999888887663 3444444
No 207
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.72 E-value=5.8e-06 Score=51.07 Aligned_cols=105 Identities=10% Similarity=0.105 Sum_probs=73.6
Q ss_pred ccCCCCEEEEEeCCCeEEEEcCCCCceee-cccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee--cCCC
Q psy3840 4 SRNNGSFLATGSYDGYARIWTSDGSLKST-LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS--FHSA 80 (131)
Q Consensus 4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~--~~~~ 80 (131)
+++++++.++...++.|..||..+..... .......+..+++++++..+++...++.+..||.. ++. ..+. ....
T Consensus 22 ~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~ 99 (299)
T 2z2n_A 22 VSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDS 99 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTC
T ss_pred ECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCC
Confidence 46778877766557889999987433221 12234678999999999988887778889999976 332 2222 2345
Q ss_pred CeEEEEEcCCCcE-EEEeCCCcEEEEeCCCCe
Q psy3840 81 PALDVDWQSNTSF-ASCSTDQHIHVCKLHSDK 111 (131)
Q Consensus 81 ~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~ 111 (131)
.+..+++.+++.+ ++...++.|..||. +++
T Consensus 100 ~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~ 130 (299)
T 2z2n_A 100 APYGITEGPNGDIWFTEMNGNRIGRITD-DGK 130 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred CceeeEECCCCCEEEEecCCceEEEECC-CCC
Confidence 6889999998884 55556778999998 444
No 208
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.71 E-value=3e-06 Score=52.38 Aligned_cols=108 Identities=10% Similarity=0.049 Sum_probs=75.1
Q ss_pred ccCCCCEEEEEeCCCeEEEEcCCCCceee-cccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeee-eecCCCC
Q psy3840 4 SRNNGSFLATGSYDGYARIWTSDGSLKST-LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ-FSFHSAP 81 (131)
Q Consensus 4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~-~~~~~~~ 81 (131)
+++++.+.++...++.|..|+..++.... +......+..+++++++.++++...++.+..||. +++.... .......
T Consensus 64 ~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~ 142 (299)
T 2z2n_A 64 ISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSY 142 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCC
T ss_pred ECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCC
Confidence 45778877776667889999977443221 1223456889999999998888877889999998 5543322 2223456
Q ss_pred eEEEEEcCCCcE-EEEeCCCcEEEEeCCCCeee
Q psy3840 82 ALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPV 113 (131)
Q Consensus 82 v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~ 113 (131)
+..+++.+++.+ ++...++.|..||. +++..
T Consensus 143 ~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~ 174 (299)
T 2z2n_A 143 PSFITLGSDNALWFTENQNNAIGRITE-SGDIT 174 (299)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred CceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE
Confidence 889999999885 44445678999998 55443
No 209
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.69 E-value=2.2e-08 Score=64.64 Aligned_cols=108 Identities=10% Similarity=0.020 Sum_probs=63.8
Q ss_pred CCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEE
Q psy3840 7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV 85 (131)
Q Consensus 7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~ 85 (131)
++..+++++.++.+..||.. |+.+..+..+. ...++|++..+++++.++.++.||.++++.+..+.... ....
T Consensus 91 ~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~ 164 (369)
T 2hz6_A 91 SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAAS 164 (369)
T ss_dssp ----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCB
T ss_pred cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCc
Confidence 45677888889999999987 77776665543 23456788889999999999999999998776654321 1122
Q ss_pred EEcCC----CcEEEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840 86 DWQSN----TSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120 (131)
Q Consensus 86 ~~~~~----~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 120 (131)
.+.++ +.++.++.++.++.||.++++.+.+.....
T Consensus 165 ~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 203 (369)
T 2hz6_A 165 LPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYAS 203 (369)
T ss_dssp CCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSS
T ss_pred cccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence 23332 557888899999999999999888776433
No 210
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.68 E-value=4.9e-06 Score=53.91 Aligned_cols=110 Identities=13% Similarity=0.081 Sum_probs=74.7
Q ss_pred CCCCEEEEEeCCCeEEEEcCCCCce---eeccc----------ccccEEEEEEcCCCCEEEEEeC----------CCcEE
Q psy3840 6 NNGSFLATGSYDGYARIWTSDGSLK---STLGQ----------HKGPIFALKWNKRGNYILSAGV----------DKTTI 62 (131)
Q Consensus 6 ~~~~~l~~~~~d~~i~~~~~~~~~~---~~~~~----------~~~~i~~~~~~~~~~~~~s~~~----------d~~i~ 62 (131)
+++..++..+..+.+.+.|..+... ..+.. .......+.++|+++.++.... ++.|.
T Consensus 222 ~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~ 301 (373)
T 2mad_H 222 NKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT 301 (373)
T ss_pred ecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEE
Confidence 3344444334567788888753211 11110 1223445788998887776543 35799
Q ss_pred EEECCCcceeeeeecCCCCeEEEEEcCCCc--EEEEe-CCCcEEEEeCCCCeeeEEE
Q psy3840 63 IWDAASGQCEQQFSFHSAPALDVDWQSNTS--FASCS-TDQHIHVCKLHSDKPVKSF 116 (131)
Q Consensus 63 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~-~d~~i~i~d~~~~~~~~~~ 116 (131)
++|+.+++.+..+.. ......+.|+|+++ ++++. .++.|.++|+.+++.+.++
T Consensus 302 VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 302 SVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 999999999888864 34678999999976 55555 4889999999999988884
No 211
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.68 E-value=1.1e-06 Score=57.10 Aligned_cols=119 Identities=11% Similarity=0.126 Sum_probs=82.2
Q ss_pred CCCCEEEEEeCCCeEEEEcCCCCceeeccc-------------ccccEEEEEEcCCCCEEEEEeC----------CCcEE
Q psy3840 6 NNGSFLATGSYDGYARIWTSDGSLKSTLGQ-------------HKGPIFALKWNKRGNYILSAGV----------DKTTI 62 (131)
Q Consensus 6 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~~s~~~----------d~~i~ 62 (131)
++|++++ .+.+|.|.+.|..+........ ..+....++++++++.++.... .++|.
T Consensus 236 ~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~ 314 (386)
T 3sjl_D 236 KAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVV 314 (386)
T ss_dssp TTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEE
Confidence 5665555 4568999999986433211111 1233445778998887776542 25699
Q ss_pred EEECCCcceeeeeecCCCCeEEEEEcCCCc--EEEE-eCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840 63 IWDAASGQCEQQFSFHSAPALDVDWQSNTS--FASC-STDQHIHVCKLHSDKPVKSFEGHTRVYYLA 126 (131)
Q Consensus 63 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 126 (131)
+.|+.+++.+..+... .+++.+.++++++ |++. ..++.|.++|..+++.+.++.....+..++
T Consensus 315 viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~ 380 (386)
T 3sjl_D 315 VLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVI 380 (386)
T ss_dssp EEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEE
T ss_pred EEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeE
Confidence 9999999999888753 4778999999975 5554 458899999999999999986544433333
No 212
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.64 E-value=1.1e-06 Score=54.95 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=69.7
Q ss_pred cccCCCCEEEEE-eCCCeEEEEcCC---CCc-----eeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceee
Q psy3840 3 SSRNNGSFLATG-SYDGYARIWTSD---GSL-----KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ 73 (131)
Q Consensus 3 ~~~~~~~~l~~~-~~d~~i~~~~~~---~~~-----~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~ 73 (131)
+|+|+++.++.+ +.++.|..|++. +.. ...+..+.+....++++++|+++++....+.|..||..+++.+.
T Consensus 155 ~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 155 DWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQ 234 (297)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEE
T ss_pred EEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEE
Confidence 478999877554 457889999863 322 12223334567889999999988888888899999999899888
Q ss_pred eeecCCCCeEEEEEc-CCCc-E-EEEe
Q psy3840 74 QFSFHSAPALDVDWQ-SNTS-F-ASCS 97 (131)
Q Consensus 74 ~~~~~~~~v~~~~~~-~~~~-~-~~~~ 97 (131)
.+......+++++|. |++. | ++..
T Consensus 235 ~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 235 TVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 887766678999998 6644 4 4443
No 213
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.62 E-value=1.1e-06 Score=57.83 Aligned_cols=112 Identities=10% Similarity=0.098 Sum_probs=79.9
Q ss_pred ccCCCCEEEEEeCCCeEEEEcCCCCceeeccc-------------ccccEEEEEEcCCCCEEEEEeC----------CCc
Q psy3840 4 SRNNGSFLATGSYDGYARIWTSDGSLKSTLGQ-------------HKGPIFALKWNKRGNYILSAGV----------DKT 60 (131)
Q Consensus 4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~~s~~~----------d~~ 60 (131)
+.+++..++.....+.+.+.|..+..+..... .......++++|+++.++.... ++.
T Consensus 272 ~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~ 351 (426)
T 3c75_H 272 FSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRF 351 (426)
T ss_dssp ECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEE
T ss_pred ecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCE
Confidence 46777777777778888888875332211110 1122223688998887666542 357
Q ss_pred EEEEECCCcceeeeeecCCCCeEEEEEcCCCc--EEEEe-CCCcEEEEeCCCCeeeEEE
Q psy3840 61 TIIWDAASGQCEQQFSFHSAPALDVDWQSNTS--FASCS-TDQHIHVCKLHSDKPVKSF 116 (131)
Q Consensus 61 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~-~d~~i~i~d~~~~~~~~~~ 116 (131)
+.++|..+.+.+..+... .....+.++|+++ +++.. .++.|.++|+.+++.+.++
T Consensus 352 VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 352 VVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 999999999999888753 3578899999975 55555 5899999999999999887
No 214
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.62 E-value=6.1e-06 Score=57.75 Aligned_cols=106 Identities=8% Similarity=-0.040 Sum_probs=68.9
Q ss_pred cccCCCCEEEEEeCCCe--------------EEEEcCCCCc-----eeecccccccEEEEEEcCCCCEEEEEeCC-----
Q psy3840 3 SSRNNGSFLATGSYDGY--------------ARIWTSDGSL-----KSTLGQHKGPIFALKWNKRGNYILSAGVD----- 58 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~--------------i~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~s~~~d----- 58 (131)
+|+|| +.|+.+..++. |.+|++.... +.....+...+..+.|+|+|++++..+.+
T Consensus 215 ~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 293 (741)
T 1yr2_A 215 AWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPV 293 (741)
T ss_dssp EESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSC
T ss_pred EEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCc
Confidence 58999 88888876554 8888876222 22222233458899999999988876644
Q ss_pred CcEEEEECCCc--ceeeeeecCCCCeEEEEEcCCCc-EEEEeC----CCcEEEEeCCCC
Q psy3840 59 KTTIIWDAASG--QCEQQFSFHSAPALDVDWQSNTS-FASCST----DQHIHVCKLHSD 110 (131)
Q Consensus 59 ~~i~~~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~----d~~i~i~d~~~~ 110 (131)
..+++||+.++ +....+..+........+ |++. ++..+. +..|.+||+.++
T Consensus 294 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 294 NTVHVARVTNGKIGPVTALIPDLKAQWDFVD-GVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp CEEEEEEEETTEECCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred ceEEEEECCCCCCcccEEecCCCCceEEEEe-ccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 37999999876 314445444444444433 6655 555443 345999999874
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.61 E-value=2.8e-06 Score=53.23 Aligned_cols=108 Identities=8% Similarity=-0.044 Sum_probs=72.8
Q ss_pred cccCCCC-EEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee---c-
Q psy3840 3 SSRNNGS-FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS---F- 77 (131)
Q Consensus 3 ~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~---~- 77 (131)
.|+++++ +++++..++.|..|+..++ ...+......+..++++++++++++...++.|..|+.. ++...... .
T Consensus 51 ~~~~~g~~l~~~d~~~~~i~~~~~~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~ 128 (305)
T 3dr2_A 51 AWWEAQRTLVWSDLVGRRVLGWREDGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGK 128 (305)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEETTSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTE
T ss_pred eEeCCCCEEEEEECCCCEEEEEeCCCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCC
Confidence 3678888 5666667889999988654 34444556678899999999977776667889999975 54322111 1
Q ss_pred CCCCeEEEEEcCCCcEEE-----EeC-------------CCcEEEEeCCCCee
Q psy3840 78 HSAPALDVDWQSNTSFAS-----CST-------------DQHIHVCKLHSDKP 112 (131)
Q Consensus 78 ~~~~v~~~~~~~~~~~~~-----~~~-------------d~~i~i~d~~~~~~ 112 (131)
....+..+.+++++.+.. +.. .+.|+.+|..+++.
T Consensus 129 ~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~ 181 (305)
T 3dr2_A 129 RLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL 181 (305)
T ss_dssp ECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC
T ss_pred ccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE
Confidence 113467899999988544 321 24678888766643
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.60 E-value=1.7e-05 Score=50.22 Aligned_cols=114 Identities=6% Similarity=-0.068 Sum_probs=71.0
Q ss_pred ccCCCCEEEEEeC------CCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEE-eCCCcEEEEECC--Cc-ce--
Q psy3840 4 SRNNGSFLATGSY------DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAA--SG-QC-- 71 (131)
Q Consensus 4 ~~~~~~~l~~~~~------d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~-~~d~~i~~~d~~--~~-~~-- 71 (131)
++++|++.++... .+.|..++ .++. ..+.........++|+|+++.++.+ ..++.|.+||+. ++ +.
T Consensus 141 ~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~ 218 (326)
T 2ghs_A 141 MHPSGALWIGTMGRKAETGAGSIYHVA-KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK 218 (326)
T ss_dssp ECTTSCEEEEEEETTCCTTCEEEEEEE-TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC
T ss_pred ECCCCCEEEEeCCCcCCCCceEEEEEe-CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC
Confidence 5678876665432 24555566 4332 2233333456789999999876554 457889999986 55 32
Q ss_pred ---eeeeecCCCCeEEEEEcCCCcE-EEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840 72 ---EQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT 120 (131)
Q Consensus 72 ---~~~~~~~~~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~~~ 120 (131)
...+.........+.+++++.+ ++...++.|..||. +++.+..+..+.
T Consensus 219 ~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~ 270 (326)
T 2ghs_A 219 AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG 270 (326)
T ss_dssp CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC
T ss_pred ceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCC
Confidence 1122222344678889999885 44445678999998 577666666554
No 217
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.56 E-value=2.4e-06 Score=59.40 Aligned_cols=110 Identities=9% Similarity=0.131 Sum_probs=77.7
Q ss_pred CEEEEEeCCCeEEEEcCC-CCceeeccccc-----------ccE------------------------EEEEEcCCCCEE
Q psy3840 9 SFLATGSYDGYARIWTSD-GSLKSTLGQHK-----------GPI------------------------FALKWNKRGNYI 52 (131)
Q Consensus 9 ~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~-----------~~i------------------------~~~~~~~~~~~~ 52 (131)
..++.++.+|.++++|.. |+.+....... .++ ..++++|+..++
T Consensus 328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~ 407 (677)
T 1kb0_A 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (677)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence 578888899999999976 66654432110 011 146788988777
Q ss_pred EEEeC-------------------------------------------CCcEEEEECCCcceeeeeecCCCCeEEEEEcC
Q psy3840 53 LSAGV-------------------------------------------DKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 89 (131)
Q Consensus 53 ~s~~~-------------------------------------------d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 89 (131)
++... .+.+..||+.+++.+..+... .+.....+..
T Consensus 408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~ 486 (677)
T 1kb0_A 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTT 486 (677)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEE
T ss_pred EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcceEe
Confidence 76533 167999999999988777643 3333333444
Q ss_pred C-CcEEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840 90 N-TSFASCSTDQHIHVCKLHSDKPVKSFEGH 119 (131)
Q Consensus 90 ~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 119 (131)
+ +.++.++.|+.+++||.++++.+.++...
T Consensus 487 ~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 517 (677)
T 1kb0_A 487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTG 517 (677)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence 4 55777889999999999999999988643
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.55 E-value=5.3e-06 Score=51.99 Aligned_cols=120 Identities=10% Similarity=0.027 Sum_probs=73.7
Q ss_pred ccCCCCEEEE----EeC-------------CCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCC------Cc
Q psy3840 4 SRNNGSFLAT----GSY-------------DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD------KT 60 (131)
Q Consensus 4 ~~~~~~~l~~----~~~-------------d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d------~~ 60 (131)
++++|++.++ |.. .+.|..++.....+..+. .......++|+|+++.++.+... +.
T Consensus 138 ~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~ 216 (305)
T 3dr2_A 138 VARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVE 216 (305)
T ss_dssp ECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCE
T ss_pred ECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCE
Confidence 5677887775 321 245777776432222222 34456789999999977777664 68
Q ss_pred EEEEECCCccee--eeee-cCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840 61 TIIWDAASGQCE--QQFS-FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA 126 (131)
Q Consensus 61 i~~~d~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 126 (131)
|..|++..+... ..+. ........+++++++.+..+..+ .|.+|+. .++.+..+..+......+
T Consensus 217 i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~-~g~~~~~~~~~~~~~~~~ 283 (305)
T 3dr2_A 217 ITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-GVCVFDS-DGQLLGHIPTPGTASNCT 283 (305)
T ss_dssp EEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSS-EEEEECT-TSCEEEEEECSSCCCEEE
T ss_pred EEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCC-cEEEECC-CCCEEEEEECCCceeEEE
Confidence 999998654311 1111 11234567889999886666544 5999998 477777766544433333
No 219
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.52 E-value=4.4e-06 Score=54.07 Aligned_cols=119 Identities=14% Similarity=-0.008 Sum_probs=79.0
Q ss_pred CCCCEEEEEeCCCeEEEEcCCCCc---eeeccc----------ccccEEEEEEcCCCCEEEEEeC---------CCcEEE
Q psy3840 6 NNGSFLATGSYDGYARIWTSDGSL---KSTLGQ----------HKGPIFALKWNKRGNYILSAGV---------DKTTII 63 (131)
Q Consensus 6 ~~~~~l~~~~~d~~i~~~~~~~~~---~~~~~~----------~~~~i~~~~~~~~~~~~~s~~~---------d~~i~~ 63 (131)
+++..++..+. +.+.+.|..+.. +..... .......+.++|+++.++.+.. ++.+.+
T Consensus 220 ~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~V 298 (368)
T 1mda_H 220 NYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS 298 (368)
T ss_dssp TTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred ccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEE
Confidence 34444555455 778888875321 111110 1111122679999887776533 235669
Q ss_pred EECCCcceeeeeecCCCCeEEEEEcCCCc--EEEEe-CCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840 64 WDAASGQCEQQFSFHSAPALDVDWQSNTS--FASCS-TDQHIHVCKLHSDKPVKSFEGHTRVYYLA 126 (131)
Q Consensus 64 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 126 (131)
+|+.+.+.+..+.... ....+.++|+++ +++.. .++.|.++|+.+++.+.++.....+-..+
T Consensus 299 iD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~ 363 (368)
T 1mda_H 299 VTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLS 363 (368)
T ss_dssp EESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEE
T ss_pred EECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEE
Confidence 9999999888887543 678899999976 56666 58999999999999999987655544433
No 220
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.51 E-value=4.5e-06 Score=58.14 Aligned_cols=60 Identities=10% Similarity=0.084 Sum_probs=45.7
Q ss_pred CcEEEEECCCcceeeeeecCCCCeEEEEEc-CCCcEEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840 59 KTTIIWDAASGQCEQQFSFHSAPALDVDWQ-SNTSFASCSTDQHIHVCKLHSDKPVKSFEGH 119 (131)
Q Consensus 59 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 119 (131)
|.++.||+.+++.+.....+. +...-.+. ..+.++.++.|+.++.||.++|+.+.+++..
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred eeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 779999999999888776543 22222333 3456788899999999999999999888754
No 221
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.50 E-value=1.1e-05 Score=52.90 Aligned_cols=103 Identities=11% Similarity=0.065 Sum_probs=69.0
Q ss_pred cccCC-CCEEEEEeCCCeEEEEcCCCCceeeccccc---------------ccEEEEEEcCCCCEEEEEe-CCCcEEEEE
Q psy3840 3 SSRNN-GSFLATGSYDGYARIWTSDGSLKSTLGQHK---------------GPIFALKWNKRGNYILSAG-VDKTTIIWD 65 (131)
Q Consensus 3 ~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~---------------~~i~~~~~~~~~~~~~s~~-~d~~i~~~d 65 (131)
+++|+ +.++++...++.|+.|+..+.. ..+.++. .....++++|+++++++-. .++.|+.|+
T Consensus 273 a~~p~~g~lyv~d~~~~~I~~~~~~g~~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~ 351 (409)
T 3hrp_A 273 IYYFVDSNFYMSDQNLSSVYKITPDGEC-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLD 351 (409)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCCE-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEE
T ss_pred EEeCCCCEEEEEeCCCCEEEEEecCCCE-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEE
Confidence 35674 5555555557889999987652 2222221 3468899999999888877 789999999
Q ss_pred CCCcceeeeeecC---------------CCCeEEEEEcCCCcE-EEEeCCCcEEEEeC
Q psy3840 66 AASGQCEQQFSFH---------------SAPALDVDWQSNTSF-ASCSTDQHIHVCKL 107 (131)
Q Consensus 66 ~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~-~~~~~d~~i~i~d~ 107 (131)
+.++... .+.++ -.....+++++++.+ ++-..++.|+.+++
T Consensus 352 ~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 352 ILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 8777543 33222 135788999998774 55555667776654
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.50 E-value=9.3e-06 Score=51.79 Aligned_cols=116 Identities=9% Similarity=0.093 Sum_probs=75.8
Q ss_pred cccCCCCEEEEEeC--CCeEEEEcC-CCCce------eecccccccEEEEEEcCCCCEEEEEeC-----CCcEEEEECCC
Q psy3840 3 SSRNNGSFLATGSY--DGYARIWTS-DGSLK------STLGQHKGPIFALKWNKRGNYILSAGV-----DKTTIIWDAAS 68 (131)
Q Consensus 3 ~~~~~~~~l~~~~~--d~~i~~~~~-~~~~~------~~~~~~~~~i~~~~~~~~~~~~~s~~~-----d~~i~~~d~~~ 68 (131)
+++++|+.+++... ++.+++|.+ .++.. .....+-..+..++++++++++++-.. +..|..||+.+
T Consensus 23 a~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~t 102 (343)
T 2qe8_A 23 TLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLN 102 (343)
T ss_dssp EECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTT
T ss_pred EECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCC
Confidence 35788888888642 342444443 33322 011234467899999999887766544 57899999998
Q ss_pred cceeeeeecC------CCCeEEEEEcCC-Cc-EEEEe---CCCcEEEEeCCCCeeeEEEec
Q psy3840 69 GQCEQQFSFH------SAPALDVDWQSN-TS-FASCS---TDQHIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 69 ~~~~~~~~~~------~~~v~~~~~~~~-~~-~~~~~---~d~~i~i~d~~~~~~~~~~~~ 118 (131)
++.+..+... ...+..++++++ +. +++.. .++.|.+||+.+++..+.+..
T Consensus 103 g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~ 163 (343)
T 2qe8_A 103 NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQG 163 (343)
T ss_dssp TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTT
T ss_pred CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecC
Confidence 8866655421 134578999975 55 45544 578899999988876665543
No 223
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.49 E-value=3.9e-05 Score=47.32 Aligned_cols=107 Identities=9% Similarity=0.053 Sum_probs=74.3
Q ss_pred ccCCCCEEEEEeCCCeEEEEcCCCCcee-ecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceee-eeecCCCC
Q psy3840 4 SRNNGSFLATGSYDGYARIWTSDGSLKS-TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ-QFSFHSAP 81 (131)
Q Consensus 4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~-~~~~~~~~ 81 (131)
+.++++..++...++.|..|+..++... .+......+..+++++++..+++...++.+..+|.. ++... ........
T Consensus 27 ~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~ 105 (300)
T 2qc5_A 27 SSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSG 105 (300)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCC
T ss_pred ECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCC
Confidence 4567777777666889999998743322 122233578899999999988887778889999987 54421 22223356
Q ss_pred eEEEEEcCCCcE-EEEeCCCcEEEEeCCCCee
Q psy3840 82 ALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKP 112 (131)
Q Consensus 82 v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~ 112 (131)
+..+++.+++.+ ++...++.|..+|.. ++.
T Consensus 106 ~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~ 136 (300)
T 2qc5_A 106 PYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI 136 (300)
T ss_dssp EEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred CccceECCCCCEEEEccCCCeEEEECCC-CCE
Confidence 889999998885 444447789999887 543
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.48 E-value=1.4e-05 Score=50.64 Aligned_cols=101 Identities=9% Similarity=-0.063 Sum_probs=65.9
Q ss_pred cccCCC-CEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC---
Q psy3840 3 SSRNNG-SFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH--- 78 (131)
Q Consensus 3 ~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~--- 78 (131)
.|+|++ ..+++...++.|..||..+.....+. ....+.++.++|+++++++. .+ .+.+||..+++........
T Consensus 55 ~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~ 131 (326)
T 2ghs_A 55 TFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDL 131 (326)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTC
T ss_pred eEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCC
Confidence 367764 45566666889999998755443332 34678999999999877765 33 4899998877643222111
Q ss_pred -CCCeEEEEEcCCCcEEEEeC-------CCcEEEEe
Q psy3840 79 -SAPALDVDWQSNTSFASCST-------DQHIHVCK 106 (131)
Q Consensus 79 -~~~v~~~~~~~~~~~~~~~~-------d~~i~i~d 106 (131)
...+..+.++|++++..++. .+.|+.++
T Consensus 132 ~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 132 PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence 12478899999988544432 24566666
No 225
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.46 E-value=5.1e-05 Score=50.32 Aligned_cols=112 Identities=15% Similarity=0.165 Sum_probs=77.1
Q ss_pred CCCCEEEE-EeCCCeEEEEcCC-C----Cceeecc------cc-cccEEEEEEcCCCCEEEEEeCC------CcEEEEEC
Q psy3840 6 NNGSFLAT-GSYDGYARIWTSD-G----SLKSTLG------QH-KGPIFALKWNKRGNYILSAGVD------KTTIIWDA 66 (131)
Q Consensus 6 ~~~~~l~~-~~~d~~i~~~~~~-~----~~~~~~~------~~-~~~i~~~~~~~~~~~~~s~~~d------~~i~~~d~ 66 (131)
+++++|++ +..+++|+++|+. . +...++. .. ...-..+.+.|++ .++++..+ +.+.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 67777766 4458889999985 1 2223331 11 1134567788999 77766555 78999999
Q ss_pred CCcceeeeeecCCCC---eEEEEEcCCCc-EEEEe-------------------CCCcEEEEeCCCCeeeEEEec
Q psy3840 67 ASGQCEQQFSFHSAP---ALDVDWQSNTS-FASCS-------------------TDQHIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 67 ~~~~~~~~~~~~~~~---v~~~~~~~~~~-~~~~~-------------------~d~~i~i~d~~~~~~~~~~~~ 118 (131)
.+.+.+..+.....+ -..+.|+|+++ +++.. .+.+|.+||+.+++.+.++..
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 999998888643222 34578899977 55553 267899999998887777754
No 226
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.44 E-value=5.3e-05 Score=46.71 Aligned_cols=107 Identities=10% Similarity=0.037 Sum_probs=73.9
Q ss_pred ccCCCCEEEEEeCCCeEEEEcCCCCceee-cccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceee-eeecCCCC
Q psy3840 4 SRNNGSFLATGSYDGYARIWTSDGSLKST-LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ-QFSFHSAP 81 (131)
Q Consensus 4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~-~~~~~~~~ 81 (131)
+.+++++.++...++.|..+|..++.... .......+..+++++++.++++...++.+..+|.. ++... .+......
T Consensus 69 ~~~~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~ 147 (300)
T 2qc5_A 69 VSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSY 147 (300)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCC
T ss_pred ECCCCCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCC
Confidence 45677777766557889999987544321 12233568899999999988887778899999987 54432 22223456
Q ss_pred eEEEEEcCCCcE-EEEeCCCcEEEEeCCCCee
Q psy3840 82 ALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKP 112 (131)
Q Consensus 82 v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~ 112 (131)
+..+++.+++.+ ++...++.|..+|. +++.
T Consensus 148 ~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~ 178 (300)
T 2qc5_A 148 PAFITLGSDNALWFTENQNNSIGRITN-TGKL 178 (300)
T ss_dssp EEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred ceeEEECCCCCEEEEecCCCeEEEECC-CCcE
Confidence 889999998885 44444678999998 4543
No 227
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.37 E-value=3.8e-05 Score=49.34 Aligned_cols=111 Identities=6% Similarity=-0.002 Sum_probs=76.0
Q ss_pred CCCEEEEEeCCCeEEEEcCC-CCceeecccc---------cccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee
Q psy3840 7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQH---------KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS 76 (131)
Q Consensus 7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~---------~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~ 76 (131)
.+..+++++.++.|..+|.. ++.+...... ...+... ....+..++.++.++.+..+|..+++.+....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 46788888889999999986 7766554432 1222221 12245677788889999999999999877665
Q ss_pred cCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840 77 FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH 119 (131)
Q Consensus 77 ~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 119 (131)
........... .++.++.++.++.+..+|.++++.+......
T Consensus 131 ~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~ 172 (376)
T 3q7m_A 131 VAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLD 172 (376)
T ss_dssp CSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred CCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCC
Confidence 43222111112 2566788888999999999999888776543
No 228
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.36 E-value=5.2e-06 Score=53.75 Aligned_cols=100 Identities=4% Similarity=-0.195 Sum_probs=72.8
Q ss_pred CCEEEEEeC-CC----eEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCcce
Q psy3840 8 GSFLATGSY-DG----YARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAG----------VDKTTIIWDAASGQC 71 (131)
Q Consensus 8 ~~~l~~~~~-d~----~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~----------~d~~i~~~d~~~~~~ 71 (131)
...+++... ++ +|.++|.. ++.+.++.....+ .+.++|+++.++++. .++.+.+||+.+++.
T Consensus 31 ~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v 108 (368)
T 1mda_H 31 SRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP 108 (368)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred CCeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence 344544443 44 78899987 6666666554455 799999999888876 368899999999999
Q ss_pred eeeeecC-------CCCeEEEEEcCCCc-EEEEeC--CCcEEE--EeCCC
Q psy3840 72 EQQFSFH-------SAPALDVDWQSNTS-FASCST--DQHIHV--CKLHS 109 (131)
Q Consensus 72 ~~~~~~~-------~~~v~~~~~~~~~~-~~~~~~--d~~i~i--~d~~~ 109 (131)
+..+... ......+.++|+++ ++.+.. +..+.+ +|+.+
T Consensus 109 v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 8887643 12456799999987 655543 457888 99876
No 229
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.36 E-value=2.2e-05 Score=48.64 Aligned_cols=111 Identities=9% Similarity=0.051 Sum_probs=70.5
Q ss_pred ccCCCCEEEEEeC--CCeEEEEcCC-CCceeeccccc-ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840 4 SRNNGSFLATGSY--DGYARIWTSD-GSLKSTLGQHK-GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS 79 (131)
Q Consensus 4 ~~~~~~~l~~~~~--d~~i~~~~~~-~~~~~~~~~~~-~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (131)
+++++....+.+. ++.|+++|.. ++.+..+.-.. .....+++. .+..+++.-.++.+.++|..+.+.+..+....
T Consensus 28 ~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~ 106 (266)
T 2iwa_A 28 YAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQM 106 (266)
T ss_dssp ECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEECCS
T ss_pred EeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEECCC
Confidence 5676544444333 5789999987 66665543211 122345554 23444555568899999999999888886431
Q ss_pred CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840 80 APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~ 117 (131)
..-+.+ ++++. ++.+..++.+.++|..+.+.+..+.
T Consensus 107 ~~g~gl--t~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~ 143 (266)
T 2iwa_A 107 KDGWGL--ATDGKILYGSDGTSILYEIDPHTFKLIKKHN 143 (266)
T ss_dssp SSCCEE--EECSSSEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred CCeEEE--EECCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence 222334 44544 6555678899999999988777765
No 230
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.36 E-value=1.2e-05 Score=50.47 Aligned_cols=105 Identities=15% Similarity=0.097 Sum_probs=72.6
Q ss_pred CCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEE
Q psy3840 8 GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 87 (131)
Q Consensus 8 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 87 (131)
+..+.+++.++.+..+|..++...........+.++...+++. +..++.++.+..+|.. ++....+......+.++..
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~ 184 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI 184 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence 4567777778889999977665555544444455666666676 4456677889999988 7776666554555667777
Q ss_pred cCCCcEEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840 88 QSNTSFASCSTDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 88 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 117 (131)
.+++.+..++ +.+..+| .+++.+..+.
T Consensus 185 d~~g~l~v~t--~~l~~~d-~~g~~~~~~~ 211 (330)
T 3hxj_A 185 GKDGTIYFGS--DKVYAIN-PDGTEKWNFY 211 (330)
T ss_dssp CTTCCEEEES--SSEEEEC-TTSCEEEEEC
T ss_pred cCCCEEEEEe--CEEEEEC-CCCcEEEEEc
Confidence 7777766666 7888888 6676665544
No 231
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.32 E-value=0.0001 Score=51.32 Aligned_cols=116 Identities=8% Similarity=0.020 Sum_probs=72.4
Q ss_pred cccCCCCEEEEEeCCC-------------eEEEEcCCCC-----ceeeccc-ccccEEEEEEcCCCCEEEEEeC----CC
Q psy3840 3 SSRNNGSFLATGSYDG-------------YARIWTSDGS-----LKSTLGQ-HKGPIFALKWNKRGNYILSAGV----DK 59 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~-------------~i~~~~~~~~-----~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~----d~ 59 (131)
+|+ |++.|+.+..+. .|.+|++... .+..... +......+.++|++++++.... .+
T Consensus 181 ~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 259 (693)
T 3iuj_A 181 SWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGN 259 (693)
T ss_dssp EEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCC
T ss_pred EEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCc
Confidence 478 999998888774 3888987622 2222233 4455788999999998754332 35
Q ss_pred cEEEEECCCcc-eeeeeecCCCCeEEEEEcCC-CcE-EEEeCC---CcEEEEeCCCCee--eEEEeccc
Q psy3840 60 TTIIWDAASGQ-CEQQFSFHSAPALDVDWQSN-TSF-ASCSTD---QHIHVCKLHSDKP--VKSFEGHT 120 (131)
Q Consensus 60 ~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~-~~~~~d---~~i~i~d~~~~~~--~~~~~~~~ 120 (131)
.++++|+.++. ....+..+....... ++++ +.+ +....+ ..|..+|+.++.. ...+..|.
T Consensus 260 ~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 327 (693)
T 3iuj_A 260 RLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER 327 (693)
T ss_dssp EEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC
T ss_pred EEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC
Confidence 89999998763 344555444444444 4454 444 444433 5799999987643 33444443
No 232
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.32 E-value=1.8e-05 Score=49.63 Aligned_cols=104 Identities=15% Similarity=0.127 Sum_probs=74.2
Q ss_pred CEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEc
Q psy3840 9 SFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ 88 (131)
Q Consensus 9 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~ 88 (131)
..+..++.++.+..+|..++...........+.++...+++..++.. +.+..+| .+++...........+.++...
T Consensus 148 g~l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~ 223 (330)
T 3hxj_A 148 GTIYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAIS 223 (330)
T ss_dssp SCEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEEC
T ss_pred CEEEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEEC
Confidence 44666777889999998766655555444556667777777765544 7889999 7777766665555567788888
Q ss_pred CCCcEEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840 89 SNTSFASCSTDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 89 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 117 (131)
+++.+..++.++.+..+|. +++.+..+.
T Consensus 224 ~~g~l~v~t~~~gl~~~~~-~g~~~~~~~ 251 (330)
T 3hxj_A 224 EDGTIYVTSLDGHLYAINP-DGTEKWRFK 251 (330)
T ss_dssp TTSCEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred CCCeEEEEcCCCeEEEECC-CCCEeEEee
Confidence 8888878888888888874 565555554
No 233
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.23 E-value=4.3e-05 Score=47.21 Aligned_cols=106 Identities=11% Similarity=0.097 Sum_probs=71.6
Q ss_pred CCEEEEEeCCCeEEEEcCC-CCceeecccccccE--EEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEE
Q psy3840 8 GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPI--FALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD 84 (131)
Q Consensus 8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i--~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~ 84 (131)
+.+..+.+.+|.|+.+|+. ++.+..+ -.... ..+++. .++.+...-.++.+.++|..+.+.+.++... ..-+.
T Consensus 65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~-g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwG 140 (268)
T 3nok_A 65 GHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASD-GERLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGWG 140 (268)
T ss_dssp TEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEEC-SSCEEEEESSSCEEEEEETTTTEEEEEEECS-SCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEe-CCEEEEEEccCCEEEEEECCcCcEEEEEeCC-CceeE
Confidence 4555666678899999987 6655555 22222 334543 3355555556899999999999999888753 33345
Q ss_pred EEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840 85 VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 85 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 118 (131)
+++. .++++.+..++.|+++|..+.+.+.++..
T Consensus 141 Lt~D-g~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 141 LCYW-NGKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp EEEE-TTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred EecC-CCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 5543 23466666688999999999888877653
No 234
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.23 E-value=5.2e-05 Score=51.83 Aligned_cols=61 Identities=10% Similarity=-0.003 Sum_probs=44.4
Q ss_pred CCcEEEEECCCcceeeeeecCCCCeEEEE-EcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840 58 DKTTIIWDAASGQCEQQFSFHSAPALDVD-WQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH 119 (131)
Q Consensus 58 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 119 (131)
++.+..||+.+++.+..+.... .+.... ...++.++.++.|+.++.+|.++++.+.++...
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence 4789999999999887765432 222221 223566777889999999999999999888643
No 235
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.22 E-value=3.9e-05 Score=47.31 Aligned_cols=107 Identities=13% Similarity=0.154 Sum_probs=69.6
Q ss_pred CCCEEEEEeCCC--eEEEEcCC-CCceeeccccccc-EEEEEEcCCCCEEE-EEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840 7 NGSFLATGSYDG--YARIWTSD-GSLKSTLGQHKGP-IFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSFHSAP 81 (131)
Q Consensus 7 ~~~~l~~~~~d~--~i~~~~~~-~~~~~~~~~~~~~-i~~~~~~~~~~~~~-s~~~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (131)
++.+..+.+.+| .|+.+|+. ++.+..+...... -..+.. .+..+. ..-.++.+.++|..+.+.+.++.... .
T Consensus 52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-e 128 (262)
T 3nol_A 52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-E 128 (262)
T ss_dssp TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCCEEEEEECSS-C
T ss_pred CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCEEEEEECccCcEEEEEECCC-C
Confidence 455555666665 89999987 6665555432221 123443 344444 44458899999999999998887543 3
Q ss_pred eEEEEEcCCC-cEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840 82 ALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 82 v~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~ 118 (131)
-+.+++ ++ +++.+..++.|.++|..+.+.+.++..
T Consensus 129 G~glt~--dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 129 GWGLTH--NDQYLIMSDGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp CCCEEE--CSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred ceEEec--CCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence 344543 44 466666678899999999887777643
No 236
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.21 E-value=8.2e-05 Score=46.10 Aligned_cols=106 Identities=11% Similarity=0.021 Sum_probs=75.5
Q ss_pred ccCCCCEEEEEeCCCeEEEEcCC-CCceeeccccc-----ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec
Q psy3840 4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHK-----GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF 77 (131)
Q Consensus 4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~-----~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~ 77 (131)
+++|++.++++..++.|.++|.. .+.+..+.... .....+.+. ++..++....++.|.+.|..+++.+..+..
T Consensus 112 lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~ 190 (266)
T 2iwa_A 112 LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILL 190 (266)
T ss_dssp EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEEC
T ss_pred EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEEC
Confidence 45678888877778899999987 44444443211 135677777 676555555688999999999998887753
Q ss_pred C-------------CCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCCC
Q psy3840 78 H-------------SAPALDVDWQSNTS--FASCSTDQHIHVCKLHSD 110 (131)
Q Consensus 78 ~-------------~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~ 110 (131)
. ......++++|++. ++++...+.+.+.++...
T Consensus 191 ~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 191 PNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp HHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 2 13568999999864 677778888888887643
No 237
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.21 E-value=0.00018 Score=46.22 Aligned_cols=106 Identities=11% Similarity=0.046 Sum_probs=73.6
Q ss_pred CCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC-CCCeEEE
Q psy3840 8 GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH-SAPALDV 85 (131)
Q Consensus 8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~ 85 (131)
+..++.++.++.+..+|.. ++.+..... .....+.. ++..++.++.++.+..+|..+++.+...... .......
T Consensus 239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 314 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSP 314 (376)
T ss_dssp TTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCC
T ss_pred CCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCC
Confidence 4677788888999999986 666554432 22333333 4667778888999999999999887665521 1122222
Q ss_pred EEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840 86 DWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 86 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 118 (131)
.. .++.++.++.++.++.+|.++++.+.....
T Consensus 315 ~~-~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 315 VL-YNGNLVVGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp EE-ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EE-ECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 22 246688888899999999999998877764
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.18 E-value=5.5e-05 Score=51.74 Aligned_cols=83 Identities=11% Similarity=0.091 Sum_probs=61.7
Q ss_pred cEEEEEEcCCCCEEEEEeC-CCcEEEEECCCcc------------eeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEE
Q psy3840 39 PIFALKWNKRGNYILSAGV-DKTTIIWDAASGQ------------CEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHV 104 (131)
Q Consensus 39 ~i~~~~~~~~~~~~~s~~~-d~~i~~~d~~~~~------------~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i 104 (131)
...++.++|||+++++++. +.++.++|+.+.+ ...... -......++|+|+|. +++.--|++|.+
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~k 356 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVK 356 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEE
Confidence 3467899999998887765 8899999998653 222222 235678899999997 567778999999
Q ss_pred EeCCC----------CeeeEEEecccce
Q psy3840 105 CKLHS----------DKPVKSFEGHTRV 122 (131)
Q Consensus 105 ~d~~~----------~~~~~~~~~~~~~ 122 (131)
||+.+ .+.+.++..|.++
T Consensus 357 wdi~~a~~~~~g~~~~~vi~kidV~yqp 384 (595)
T 1fwx_A 357 WNIEDAIRAYAGEKVDPIKDKLDVHYQP 384 (595)
T ss_dssp EEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred EEhhHhhhhhcccccceeEEEeeccccc
Confidence 99976 5667777666443
No 239
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.15 E-value=8.2e-05 Score=50.99 Aligned_cols=61 Identities=16% Similarity=0.085 Sum_probs=44.5
Q ss_pred CCcEEEEECCCcceeeeeecCCCCeEE-EEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840 58 DKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH 119 (131)
Q Consensus 58 d~~i~~~d~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 119 (131)
++.+..||+.+++.+....... +... .....++.++.++.|+.++.||.++++.+.+++..
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~ 526 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG 526 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC
Confidence 5789999999999887765432 2211 11123566777899999999999999999888654
No 240
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.11 E-value=0.00032 Score=44.69 Aligned_cols=73 Identities=5% Similarity=0.010 Sum_probs=46.7
Q ss_pred EEEEEEcCCCCEEEEEeCCC-cEEEEECC---Ccc-----eee--eeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeC
Q psy3840 40 IFALKWNKRGNYILSAGVDK-TTIIWDAA---SGQ-----CEQ--QFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKL 107 (131)
Q Consensus 40 i~~~~~~~~~~~~~s~~~d~-~i~~~d~~---~~~-----~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~ 107 (131)
+..++++|+++.++.+...+ .+..++.. .+. ... ...++......+++++++. +++...++.|.+||.
T Consensus 197 ~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 197 VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 57899999999888877665 44444431 111 001 1112233556789999988 566667789999998
Q ss_pred CCCee
Q psy3840 108 HSDKP 112 (131)
Q Consensus 108 ~~~~~ 112 (131)
++++.
T Consensus 277 ~~G~~ 281 (343)
T 2qe8_A 277 ADRAY 281 (343)
T ss_dssp TTTEE
T ss_pred CCCCE
Confidence 55654
No 241
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.08 E-value=0.00029 Score=43.05 Aligned_cols=108 Identities=11% Similarity=0.061 Sum_probs=69.2
Q ss_pred CCEEEEEeCCC--eEEEEcCC-CCceeeccccccc-EEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeE
Q psy3840 8 GSFLATGSYDG--YARIWTSD-GSLKSTLGQHKGP-IFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 83 (131)
Q Consensus 8 ~~~l~~~~~d~--~i~~~~~~-~~~~~~~~~~~~~-i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~ 83 (131)
+.+..+.+.+| .|+.+|+. ++.+......... -..++.. .++.+...-.++.+.++|..+.+.+.++.... .-+
T Consensus 31 ~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~Gw 108 (243)
T 3mbr_X 31 GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGW 108 (243)
T ss_dssp TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEECSS-CCC
T ss_pred CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-Cce
Confidence 34444444443 89999987 6555544322221 1233333 24444455568999999999999998887543 335
Q ss_pred EEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840 84 DVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 84 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 118 (131)
.++.. .++++.+..++.|.++|..+.+.+.++.-
T Consensus 109 glt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 109 ALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp EEEEC-SSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred EEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence 55542 23466666688999999999888777653
No 242
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.04 E-value=0.0001 Score=51.91 Aligned_cols=107 Identities=10% Similarity=0.050 Sum_probs=65.7
Q ss_pred ccc-CCCCEEEEEeC-CC----eEEEEcCCCC-ceeecccccccEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCcc
Q psy3840 3 SSR-NNGSFLATGSY-DG----YARIWTSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVD-----KTTIIWDAASGQ 70 (131)
Q Consensus 3 ~~~-~~~~~l~~~~~-d~----~i~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d-----~~i~~~d~~~~~ 70 (131)
.|| |||++|+.+.. +| .|+++|+.+. .... ..-......+.|+|+++.++....+ ..|+.+++.++.
T Consensus 180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~ 258 (751)
T 2xe4_A 180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-DKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQ 258 (751)
T ss_dssp EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-CCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCG
T ss_pred EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-ccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCc
Confidence 468 99998886543 33 4999998744 3111 1111223467899999877766554 257778887654
Q ss_pred ee--eeeec-CCCCeEEEEEcCCCc-EEEEe---CCCcEEEEeCCCC
Q psy3840 71 CE--QQFSF-HSAPALDVDWQSNTS-FASCS---TDQHIHVCKLHSD 110 (131)
Q Consensus 71 ~~--~~~~~-~~~~v~~~~~~~~~~-~~~~~---~d~~i~i~d~~~~ 110 (131)
.. ..+.. .......+.|+|+++ |+... ....|+++|+.++
T Consensus 259 ~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 259 SEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp GGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred hhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 22 22222 223456788999987 44333 2346888998765
No 243
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.97 E-value=0.00049 Score=47.42 Aligned_cols=61 Identities=7% Similarity=-0.069 Sum_probs=43.2
Q ss_pred CCcEEEEECCCcceeeeeecCCCCeE-EEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840 58 DKTTIIWDAASGQCEQQFSFHSAPAL-DVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH 119 (131)
Q Consensus 58 d~~i~~~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 119 (131)
.+.+..||+.+++.+...... .+.. ......++.++.++.|+.++.||.++|+.+.+++..
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence 467889999999887776532 1221 111123466777889999999999999999888643
No 244
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.95 E-value=0.0002 Score=49.88 Aligned_cols=61 Identities=8% Similarity=0.177 Sum_probs=44.9
Q ss_pred CCcEEEEECCCcceeeeeecCCCCeEEEEE-cCCCcEEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840 58 DKTTIIWDAASGQCEQQFSFHSAPALDVDW-QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH 119 (131)
Q Consensus 58 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 119 (131)
++.+..||+.+++.+....... +...... ..++.++.++.|+.++.||.++++.+..+...
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 3779999999999887766432 2222222 23456788899999999999999999888654
No 245
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.94 E-value=0.00051 Score=48.03 Aligned_cols=71 Identities=14% Similarity=0.107 Sum_probs=48.7
Q ss_pred ccCCCCEEEEEeCCCe-------------------EEEEcCC-CCceeeccc--cc-------ccEEEEEEcCCCC---E
Q psy3840 4 SRNNGSFLATGSYDGY-------------------ARIWTSD-GSLKSTLGQ--HK-------GPIFALKWNKRGN---Y 51 (131)
Q Consensus 4 ~~~~~~~l~~~~~d~~-------------------i~~~~~~-~~~~~~~~~--~~-------~~i~~~~~~~~~~---~ 51 (131)
++++..+++.+..++. |..+|.. |+.+..++. |. .+........+++ .
T Consensus 242 ~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~ 321 (689)
T 1yiq_A 242 YDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKV 321 (689)
T ss_dssp EETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEE
T ss_pred EcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEE
Confidence 4667788888877763 8889987 777766543 21 1222222223554 6
Q ss_pred EEEEeCCCcEEEEECCCcceeee
Q psy3840 52 ILSAGVDKTTIIWDAASGQCEQQ 74 (131)
Q Consensus 52 ~~s~~~d~~i~~~d~~~~~~~~~ 74 (131)
++.++.+|.++++|.++|+.+..
T Consensus 322 v~~~~~~G~l~~lD~~tG~~l~~ 344 (689)
T 1yiq_A 322 LMQAPKNGFFYVIDRATGELLSA 344 (689)
T ss_dssp EEECCTTSEEEEEETTTCCEEEE
T ss_pred EEEECCCCeEEEEECCCCCEecc
Confidence 88889999999999999988743
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.94 E-value=0.00089 Score=41.00 Aligned_cols=107 Identities=4% Similarity=-0.111 Sum_probs=65.4
Q ss_pred ccCCCCEEEEEe-CCCeEEEEcCCCCceeeccc-ccccEEEEEEcCCCCEEEEEeC---CCcEEEEECCCcceeeeee-c
Q psy3840 4 SRNNGSFLATGS-YDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSAGV---DKTTIIWDAASGQCEQQFS-F 77 (131)
Q Consensus 4 ~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~---d~~i~~~d~~~~~~~~~~~-~ 77 (131)
+++++..++.+. ..+.|.+++..+.....+.. .......++++|++..++.+.. .+.|..+++.... ...+. .
T Consensus 86 ~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~ 164 (267)
T 1npe_A 86 LDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQD 164 (267)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECT
T ss_pred EEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEEC
Confidence 455555555444 46788888887544333322 1245688999996555544443 3678888875432 22222 2
Q ss_pred CCCCeEEEEEcCCC-cE-EEEeCCCcEEEEeCCCCe
Q psy3840 78 HSAPALDVDWQSNT-SF-ASCSTDQHIHVCKLHSDK 111 (131)
Q Consensus 78 ~~~~v~~~~~~~~~-~~-~~~~~d~~i~i~d~~~~~ 111 (131)
.......+++++++ .+ ++....+.|.++|+....
T Consensus 165 ~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~ 200 (267)
T 1npe_A 165 NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG 200 (267)
T ss_dssp TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence 23457889999974 54 555556789999987543
No 247
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.93 E-value=0.00074 Score=41.80 Aligned_cols=109 Identities=9% Similarity=0.046 Sum_probs=74.2
Q ss_pred CCCCEEEEEe-CCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC----
Q psy3840 6 NNGSFLATGS-YDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS---- 79 (131)
Q Consensus 6 ~~~~~l~~~~-~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~---- 79 (131)
++++.|.... .++.+.+||.. .+.+.++.-- ..-+.++ +++..++.+..++.+.++|..+.+.+..+....
T Consensus 103 ~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~ 179 (268)
T 3nok_A 103 SDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP 179 (268)
T ss_dssp ECSSCEEEEESSSCEEEEEETTTTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred EeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc
Confidence 3455555543 48889999987 5555555432 2213333 567777777778999999999998887776422
Q ss_pred -CCeEEEEEcCCCcE-EEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840 80 -APALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 80 -~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~ 118 (131)
..++.+.|. ++++ +..-.+..|.+.|.++++.+..+..
T Consensus 180 v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 180 VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 234667776 6674 4444577899999999998888763
No 248
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.91 E-value=0.0012 Score=41.64 Aligned_cols=107 Identities=8% Similarity=0.018 Sum_probs=67.3
Q ss_pred ccCCCCEEEEEeCCCeEEEEcCCCCceeecc--------------------cccccEEEEEEcC-CCCEEEEEeCCCcEE
Q psy3840 4 SRNNGSFLATGSYDGYARIWTSDGSLKSTLG--------------------QHKGPIFALKWNK-RGNYILSAGVDKTTI 62 (131)
Q Consensus 4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~--------------------~~~~~i~~~~~~~-~~~~~~s~~~d~~i~ 62 (131)
+.++++++.++..++.|..|+..+.....+. ........+++++ ++++++ +...+.+.
T Consensus 26 ~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v-~d~~~~i~ 104 (322)
T 2fp8_A 26 FDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI-VDCYYHLS 104 (322)
T ss_dssp CCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE-EETTTEEE
T ss_pred EcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE-EECCCCEE
Confidence 5678887888888899999987754333221 0123568899998 565444 44445588
Q ss_pred EEECCCcceeeeeec-----CCCCeEEEEEcC-CCcEEEEeC------------------CCcEEEEeCCCCee
Q psy3840 63 IWDAASGQCEQQFSF-----HSAPALDVDWQS-NTSFASCST------------------DQHIHVCKLHSDKP 112 (131)
Q Consensus 63 ~~d~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~~~~~~------------------d~~i~i~d~~~~~~ 112 (131)
.+|..+++. ..+.. .......+++.+ ++.+..+.. ++.+..+|..+++.
T Consensus 105 ~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 105 VVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp EECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred EEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 888765532 22211 113467899999 888544332 25688888876653
No 249
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.88 E-value=0.0012 Score=40.49 Aligned_cols=113 Identities=10% Similarity=0.029 Sum_probs=71.5
Q ss_pred ccCCCCEEEEEeC---CCeEEEEcCCCCceeecc-cccccEEEEEEcCCCCEEEEE-eCCCcEEEEECCCcceeeeeecC
Q psy3840 4 SRNNGSFLATGSY---DGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASGQCEQQFSFH 78 (131)
Q Consensus 4 ~~~~~~~l~~~~~---d~~i~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~s~-~~d~~i~~~d~~~~~~~~~~~~~ 78 (131)
++|++..++.+.. .+.|..++..+.....+. ........++++|++..++.+ ...+.|..+|+...........
T Consensus 129 vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~- 207 (267)
T 1npe_A 129 TDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG- 207 (267)
T ss_dssp EETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-
T ss_pred EeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-
Confidence 5665555555443 367888887754433332 222456889999977655554 4568899999876543333332
Q ss_pred CCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840 79 SAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 79 ~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~ 118 (131)
......++.. ++. +++...++.|..+|..+++.+..+..
T Consensus 208 ~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 208 LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence 2344566665 455 45555567999999999988888753
No 250
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.87 E-value=0.00048 Score=42.54 Aligned_cols=109 Identities=8% Similarity=0.087 Sum_probs=73.2
Q ss_pred CCCCEEEEEe-CCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC----
Q psy3840 6 NNGSFLATGS-YDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS---- 79 (131)
Q Consensus 6 ~~~~~l~~~~-~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~---- 79 (131)
++++.|.... .++.+.+||.. .+.+.++.--. ....+++++..++..+.++.+.++|..+.+.+..+....
T Consensus 94 ~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~ 170 (262)
T 3nol_A 94 DWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEE 170 (262)
T ss_dssp EETTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEE
T ss_pred EeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcc
Confidence 3455666554 47889999986 55555554321 112333566666666667889999999988887766421
Q ss_pred -CCeEEEEEcCCCcE-EEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840 80 -APALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 80 -~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~ 118 (131)
..++.+.|. ++++ +..-.++.|.+.|.++++.+..+..
T Consensus 171 ~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 171 LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 234557776 6674 4444577999999999999888764
No 251
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.83 E-value=0.0006 Score=45.37 Aligned_cols=106 Identities=9% Similarity=0.097 Sum_probs=71.7
Q ss_pred ccCCCCEEEEEeCC------CeEEEEcCC-CCceeecccc--c-ccEEEEEEcCCCCEEEEEe-----------------
Q psy3840 4 SRNNGSFLATGSYD------GYARIWTSD-GSLKSTLGQH--K-GPIFALKWNKRGNYILSAG----------------- 56 (131)
Q Consensus 4 ~~~~~~~l~~~~~d------~~i~~~~~~-~~~~~~~~~~--~-~~i~~~~~~~~~~~~~s~~----------------- 56 (131)
..|+| +++++..+ +.+.++|.. ++.+.+...- . ..-..+-|+|+++.+++..
T Consensus 145 ~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~ 223 (462)
T 2ece_A 145 CGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLK 223 (462)
T ss_dssp ECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHH
T ss_pred ECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhh
Confidence 46788 66665555 689999987 5666555422 1 2234577899999988885
Q ss_pred --CCCcEEEEECCCcceeeeeecC--CCCeEEEEE--cCCCc--EEEEe-----CCCcEEEEeCCCC
Q psy3840 57 --VDKTTIIWDAASGQCEQQFSFH--SAPALDVDW--QSNTS--FASCS-----TDQHIHVCKLHSD 110 (131)
Q Consensus 57 --~d~~i~~~d~~~~~~~~~~~~~--~~~v~~~~~--~~~~~--~~~~~-----~d~~i~i~d~~~~ 110 (131)
...+|.+||+.+++.+.++... ......+.| +|+++ ++++. .+++|.+|....+
T Consensus 224 ~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g 290 (462)
T 2ece_A 224 DRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG 290 (462)
T ss_dssp HHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT
T ss_pred hccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC
Confidence 3689999999998877777642 123455656 89876 45555 6678877665544
No 252
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.81 E-value=0.0015 Score=43.16 Aligned_cols=107 Identities=7% Similarity=0.079 Sum_probs=65.7
Q ss_pred ccC-CCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeC-CC----cEEEEECCCccee--eee
Q psy3840 4 SRN-NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV-DK----TTIIWDAASGQCE--QQF 75 (131)
Q Consensus 4 ~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~-d~----~i~~~d~~~~~~~--~~~ 75 (131)
++| ++..|+++...+.|+.+|..+..+..+.........++++++++.++.+.. ++ .+..++ ..+... ..+
T Consensus 144 vdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l 222 (430)
T 3tc9_A 144 FDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGFKVITEL 222 (430)
T ss_dssp EETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTSCSEEEE
T ss_pred ECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCceeeeeee
Confidence 455 345566655557788888886655555444456789999999996665554 22 233344 333222 222
Q ss_pred ecCCCCeEEEEEcC-CCcEE-EEeCCCcEEEEeCCCCee
Q psy3840 76 SFHSAPALDVDWQS-NTSFA-SCSTDQHIHVCKLHSDKP 112 (131)
Q Consensus 76 ~~~~~~v~~~~~~~-~~~~~-~~~~d~~i~i~d~~~~~~ 112 (131)
.. ......++++| ++.++ +-..++.|+.++...+..
T Consensus 223 ~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~ 260 (430)
T 3tc9_A 223 TK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET 260 (430)
T ss_dssp EE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE
T ss_pred cc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE
Confidence 22 23457788999 67754 444667899999886654
No 253
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.78 E-value=0.0001 Score=50.44 Aligned_cols=108 Identities=11% Similarity=0.167 Sum_probs=69.6
Q ss_pred cccCCCCEEEEEeC-CCeEEEEcCCCC-------------ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy3840 3 SSRNNGSFLATGSY-DGYARIWTSDGS-------------LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS 68 (131)
Q Consensus 3 ~~~~~~~~l~~~~~-d~~i~~~~~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~ 68 (131)
.++|||+++++++. +.+|.++|+... ...... -......++|+|+|..+++...|+++..||+..
T Consensus 283 ~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 283 NMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 36899998888765 778999998622 122222 223467889999995455666799999999876
Q ss_pred ----------cceeeeeecCCCCeE-----EEEEcCCCc-EEEEeC-C-CcE-----------EEEeCCCCe
Q psy3840 69 ----------GQCEQQFSFHSAPAL-----DVDWQSNTS-FASCST-D-QHI-----------HVCKLHSDK 111 (131)
Q Consensus 69 ----------~~~~~~~~~~~~~v~-----~~~~~~~~~-~~~~~~-d-~~i-----------~i~d~~~~~ 111 (131)
.+.+..+..+..+-. .+..+|||+ +++... . ..+ .++|+..++
T Consensus 362 a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 362 AIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp HHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred hhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 445566665543321 223468888 544432 1 233 889996543
No 254
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.77 E-value=0.0011 Score=46.32 Aligned_cols=110 Identities=12% Similarity=0.153 Sum_probs=74.6
Q ss_pred CCEEEEEeC------CCeEEEEcCC-CCceeecccccc--------------------------------cEEEEEEcCC
Q psy3840 8 GSFLATGSY------DGYARIWTSD-GSLKSTLGQHKG--------------------------------PIFALKWNKR 48 (131)
Q Consensus 8 ~~~l~~~~~------d~~i~~~~~~-~~~~~~~~~~~~--------------------------------~i~~~~~~~~ 48 (131)
+..+++++. ++.|+.+|.. |+.+..+..... ....+.++|+
T Consensus 174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~ 253 (677)
T 1kb0_A 174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE 253 (677)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT
T ss_pred CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC
Confidence 455666553 6889999976 776655432111 1124678888
Q ss_pred CCEEEEEeCCC-------------------cEEEEECCCcceeeeeecCCC---------CeEEEEEcCCC---c-EEEE
Q psy3840 49 GNYILSAGVDK-------------------TTIIWDAASGQCEQQFSFHSA---------PALDVDWQSNT---S-FASC 96 (131)
Q Consensus 49 ~~~~~s~~~d~-------------------~i~~~d~~~~~~~~~~~~~~~---------~v~~~~~~~~~---~-~~~~ 96 (131)
+..++.+..++ .+..+|..+++.+..++.... .........++ . ++.+
T Consensus 254 ~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~ 333 (677)
T 1kb0_A 254 LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHA 333 (677)
T ss_dssp TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEEC
T ss_pred CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEE
Confidence 88888776654 489999999998887764211 12222222354 3 7888
Q ss_pred eCCCcEEEEeCCCCeeeEEEe
Q psy3840 97 STDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 97 ~~d~~i~i~d~~~~~~~~~~~ 117 (131)
+.+|.++++|.++|+.+..+.
T Consensus 334 ~~~G~l~~lD~~tG~~l~~~~ 354 (677)
T 1kb0_A 334 PKNGFFFVLDRTNGKFISAKN 354 (677)
T ss_dssp CTTSEEEEEETTTCCEEEEEE
T ss_pred CCCCEEEEEECCCCCEecccc
Confidence 899999999999999987765
No 255
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.74 E-value=0.0021 Score=39.26 Aligned_cols=107 Identities=11% Similarity=0.013 Sum_probs=71.3
Q ss_pred CCCEEEEE-eCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC-----
Q psy3840 7 NGSFLATG-SYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS----- 79 (131)
Q Consensus 7 ~~~~l~~~-~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~----- 79 (131)
.++.|... ..++.+.+||.. .+.+.++.--.. -+.++ +++..++.+..++.+.++|..+.+.+..+....
T Consensus 73 ~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~ 149 (243)
T 3mbr_X 73 WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPL 149 (243)
T ss_dssp ETTEEEEEESSSSEEEEEETTTTEEEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccc
Confidence 34555544 448889999986 555555442222 23443 456666666678899999999988887776422
Q ss_pred CCeEEEEEcCCCcE-EEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840 80 APALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 80 ~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~ 117 (131)
..++.+.|. ++++ +..-.+..|.+.|.++++.+..+.
T Consensus 150 ~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~id 187 (243)
T 3mbr_X 150 DNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWID 187 (243)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred ccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence 244566665 6664 444457789999999999888876
No 256
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.54 E-value=0.0053 Score=38.43 Aligned_cols=107 Identities=15% Similarity=0.177 Sum_probs=66.5
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCC--cEEEEECCCcceeeeeec-CC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK--TTIIWDAASGQCEQQFSF-HS 79 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~--~i~~~d~~~~~~~~~~~~-~~ 79 (131)
+++++++++++-..++.|..||..++...... .......++++++++++++..... .+..+|..+++....... ..
T Consensus 38 a~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~ 116 (306)
T 2p4o_A 38 ASAPDGTIFVTNHEVGEIVSITPDGNQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDA 116 (306)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTCCEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTC
T ss_pred EECCCCCEEEEeCCCCeEEEECCCCceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCc
Confidence 35678886666667889999998765443322 234678899999999766654432 466677777764322221 11
Q ss_pred CCeEEEEEcCCCcE-EEEeCCCcEEEEeCCCC
Q psy3840 80 APALDVDWQSNTSF-ASCSTDQHIHVCKLHSD 110 (131)
Q Consensus 80 ~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~ 110 (131)
.....++..+++.+ ++...++.|+.+|..++
T Consensus 117 ~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 117 IFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp SCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred cccCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence 22344555555664 44445788888887654
No 257
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.53 E-value=0.004 Score=39.18 Aligned_cols=104 Identities=12% Similarity=0.096 Sum_probs=64.2
Q ss_pred cccCCCCEEEEE-eCCCeEEEEcCCCCc---eeecccccccEEEEEEcCCCCEEEEEeC----------CCcEEEEECCC
Q psy3840 3 SSRNNGSFLATG-SYDGYARIWTSDGSL---KSTLGQHKGPIFALKWNKRGNYILSAGV----------DKTTIIWDAAS 68 (131)
Q Consensus 3 ~~~~~~~~l~~~-~~d~~i~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~s~~~----------d~~i~~~d~~~ 68 (131)
+++++++.++.+ ..++.|..|++.+.. ...+....+ ...++++++|+++++... .+.+..+|. .
T Consensus 191 a~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~ 268 (322)
T 2fp8_A 191 EVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-F 268 (322)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-T
T ss_pred EECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-C
Confidence 467888876665 446789999876421 111111223 678899999997777654 456778886 4
Q ss_pred cceeeeeecCC----CCeEEEEEcCCCcE-EEEeCCCcEEEEeCCC
Q psy3840 69 GQCEQQFSFHS----APALDVDWQSNTSF-ASCSTDQHIHVCKLHS 109 (131)
Q Consensus 69 ~~~~~~~~~~~----~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~ 109 (131)
++.+..+.... ..+..+.+ .+++| ++...++.|..+++..
T Consensus 269 G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 269 GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 66666655332 23555555 35664 4545667888888753
No 258
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.52 E-value=0.0066 Score=39.16 Aligned_cols=119 Identities=15% Similarity=0.182 Sum_probs=74.4
Q ss_pred CCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCC----CC---EEEEEe-C--CCcEEEEECC--Ccceeee
Q psy3840 7 NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKR----GN---YILSAG-V--DKTTIIWDAA--SGQCEQQ 74 (131)
Q Consensus 7 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~---~~~s~~-~--d~~i~~~d~~--~~~~~~~ 74 (131)
...+++.....+-+.+||+.|+.+..+.. +.+..+...|+ ++ ++++.. . ++++.+|++. +++ +..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred CccEEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 44556666677889999999998887754 45666666653 22 233333 3 5789999763 333 443
Q ss_pred eec-------CCCCeEEEEE--cCC-Cc--EEEEeCCCcEEEEeCC-------CCeeeEEEecccceEEEEee
Q psy3840 75 FSF-------HSAPALDVDW--QSN-TS--FASCSTDQHIHVCKLH-------SDKPVKSFEGHTRVYYLAMD 128 (131)
Q Consensus 75 ~~~-------~~~~v~~~~~--~~~-~~--~~~~~~d~~i~i~d~~-------~~~~~~~~~~~~~~~~~~~~ 128 (131)
+.. ....+..++. +|. ++ ++....++.+..|++. +.+.++++....+.-.++.|
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvD 188 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAAD 188 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEc
Confidence 321 1134555666 664 53 5667778999998882 33667777766555555554
No 259
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.47 E-value=0.0061 Score=37.54 Aligned_cols=105 Identities=10% Similarity=0.089 Sum_probs=66.6
Q ss_pred cccCCCCEEEE-EeCCCeEEEEcCCCCceeeccc-ccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcce---eeeee-
Q psy3840 3 SSRNNGSFLAT-GSYDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC---EQQFS- 76 (131)
Q Consensus 3 ~~~~~~~~l~~-~~~d~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~---~~~~~- 76 (131)
++.|+++.|++ ...++.|...|..++.+..+.- -......+++.+++.++++...++.+.++++..... +....
T Consensus 33 a~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~ 112 (255)
T 3qqz_A 33 TWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKI 112 (255)
T ss_dssp EEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEEC
T ss_pred EEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecc
Confidence 35676665554 6667788888988777666532 124567888888888777776788899988765432 12221
Q ss_pred -----cCCCCeEEEEEcCCC-cEEEEeCCCcEEEEeC
Q psy3840 77 -----FHSAPALDVDWQSNT-SFASCSTDQHIHVCKL 107 (131)
Q Consensus 77 -----~~~~~v~~~~~~~~~-~~~~~~~d~~i~i~d~ 107 (131)
..+.....++|+|.+ ++.++.......+|.+
T Consensus 113 ~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~ 149 (255)
T 3qqz_A 113 PLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV 149 (255)
T ss_dssp CCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred ccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence 123456899999986 4555544433344443
No 260
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.45 E-value=0.008 Score=41.97 Aligned_cols=110 Identities=7% Similarity=0.105 Sum_probs=72.6
Q ss_pred CCEEEEEeC------CCeEEEEcCC-CCceeecccc---c----------------------------ccEEEEEEcCCC
Q psy3840 8 GSFLATGSY------DGYARIWTSD-GSLKSTLGQH---K----------------------------GPIFALKWNKRG 49 (131)
Q Consensus 8 ~~~l~~~~~------d~~i~~~~~~-~~~~~~~~~~---~----------------------------~~i~~~~~~~~~ 49 (131)
+..++++.. ++.|..+|.. |+.+..+... . .....++++|+.
T Consensus 162 ~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~ 241 (668)
T 1kv9_A 162 KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL 241 (668)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT
T ss_pred CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC
Confidence 345555543 5889999986 7766654321 0 011246788888
Q ss_pred CEEEEEeCCC-------------------cEEEEECCCcceeeeeecCC---------CCeEEEEEcCCCc----EEEEe
Q psy3840 50 NYILSAGVDK-------------------TTIIWDAASGQCEQQFSFHS---------APALDVDWQSNTS----FASCS 97 (131)
Q Consensus 50 ~~~~s~~~d~-------------------~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~~~~~~----~~~~~ 97 (131)
..++.+..++ .+..+|..+++.+..++... .+........+++ ++.++
T Consensus 242 ~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~ 321 (668)
T 1kv9_A 242 DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAP 321 (668)
T ss_dssp TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC
T ss_pred CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEEC
Confidence 8888877665 38999999999988776421 2222222222443 77888
Q ss_pred CCCcEEEEeCCCCeeeEEEe
Q psy3840 98 TDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 98 ~d~~i~i~d~~~~~~~~~~~ 117 (131)
.+|.++++|.++|+.+....
T Consensus 322 ~~G~l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 322 KNGFFYVLDRTNGKLISAEK 341 (668)
T ss_dssp TTSEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEEECCCCCEecccc
Confidence 99999999999999886543
No 261
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.42 E-value=0.011 Score=39.29 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=65.5
Q ss_pred ccCCCCEEEEEeCCCeEEEEcCC-CCc------------eeeccc------ccccEEEEEEcC---CCCEEEEEeCCCcE
Q psy3840 4 SRNNGSFLATGSYDGYARIWTSD-GSL------------KSTLGQ------HKGPIFALKWNK---RGNYILSAGVDKTT 61 (131)
Q Consensus 4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~------------~~~~~~------~~~~i~~~~~~~---~~~~~~s~~~d~~i 61 (131)
.+|+|.+||..+ +..|.+-.+. +.. ...+.- ...+|..+.|+| .+..+++-..|+.|
T Consensus 73 lSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~I 151 (452)
T 3pbp_A 73 SSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTI 151 (452)
T ss_dssp ECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCE
T ss_pred ECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEE
Confidence 589999999986 5578887765 210 011111 246799999999 46689999999999
Q ss_pred EEEECCCcc-eeeeee---------cCCCCeEEEEEcCCCc-EEE--EeCCCcEEEE
Q psy3840 62 IIWDAASGQ-CEQQFS---------FHSAPALDVDWQSNTS-FAS--CSTDQHIHVC 105 (131)
Q Consensus 62 ~~~d~~~~~-~~~~~~---------~~~~~v~~~~~~~~~~-~~~--~~~d~~i~i~ 105 (131)
++||+.... ....+. .....+.+++|.+++. |.. .+.+|.|+-.
T Consensus 152 r~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 152 TMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 999998621 111221 1225678888888764 444 3366666544
No 262
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.35 E-value=0.009 Score=36.80 Aligned_cols=104 Identities=7% Similarity=0.003 Sum_probs=65.3
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCC----Cceeecc-------cccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcc
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDG----SLKSTLG-------QHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQ 70 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~----~~~~~~~-------~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~ 70 (131)
+|+|.++.|.++.......+|...+ ..+..+. .+...+..++++| .+++++....++.+..+|.. ++
T Consensus 127 A~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~ 205 (255)
T 3qqz_A 127 AYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GE 205 (255)
T ss_dssp EEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CC
T ss_pred EEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CC
Confidence 4677787777776655555555432 1111111 1223568999999 55666666667788889965 54
Q ss_pred eeeeeecC---------CCCeEEEEEcCCCcEEEEeCCCcEEEEeC
Q psy3840 71 CEQQFSFH---------SAPALDVDWQSNTSFASCSTDQHIHVCKL 107 (131)
Q Consensus 71 ~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~d~~i~i~d~ 107 (131)
.+..+.-. -.....|++.++|.+...+..+.++.|.-
T Consensus 206 ~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 206 VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence 54444322 13678999999998766677777777653
No 263
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.33 E-value=0.0036 Score=43.24 Aligned_cols=110 Identities=9% Similarity=-0.018 Sum_probs=71.2
Q ss_pred CCEEEEEeC-CCeEEEEcC-C-CCceeecccccc-----------cEEEEEEcCCCCE----EEEEeCCCcEEEEECCCc
Q psy3840 8 GSFLATGSY-DGYARIWTS-D-GSLKSTLGQHKG-----------PIFALKWNKRGNY----ILSAGVDKTTIIWDAASG 69 (131)
Q Consensus 8 ~~~l~~~~~-d~~i~~~~~-~-~~~~~~~~~~~~-----------~i~~~~~~~~~~~----~~s~~~d~~i~~~d~~~~ 69 (131)
+..+++++. ++.|.-+|. . |+.+.+...... ....+++.|.+.. ++.++.|+.+..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456777777 788999998 4 777665543211 0123455443333 778888999999999999
Q ss_pred ceeeeeecCCC----CeE-EEEEcCCCcEEEEe------CCCcEEEEeCCCCeeeEEEec
Q psy3840 70 QCEQQFSFHSA----PAL-DVDWQSNTSFASCS------TDQHIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 70 ~~~~~~~~~~~----~v~-~~~~~~~~~~~~~~------~d~~i~i~d~~~~~~~~~~~~ 118 (131)
+.+........ .+. .... .+++++.++ .++.|+.+|.++|+.+.++..
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 98876543210 111 1111 145665554 378999999999999888764
No 264
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.32 E-value=0.021 Score=40.45 Aligned_cols=107 Identities=7% Similarity=-0.063 Sum_probs=63.2
Q ss_pred cccCCCCEEEEEeCC-----CeEEEEcCCCCc---eeecc-cccccEEEEEEcCCCCEEEEEeC---CCcEEEEECCCcc
Q psy3840 3 SSRNNGSFLATGSYD-----GYARIWTSDGSL---KSTLG-QHKGPIFALKWNKRGNYILSAGV---DKTTIIWDAASGQ 70 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d-----~~i~~~~~~~~~---~~~~~-~~~~~i~~~~~~~~~~~~~s~~~---d~~i~~~d~~~~~ 70 (131)
+|+||++.|+....+ ..|..+++.+.. ...+. ........+.|+|++++++.... ...++++|+.++.
T Consensus 227 ~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~ 306 (751)
T 2xe4_A 227 VWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGN 306 (751)
T ss_dssp EECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCT
T ss_pred EEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCC
Confidence 589999888777654 246677775322 12221 22334667899999998776542 3467888987752
Q ss_pred -ee--eee-ecCCCCeEEEEEcCCCcE-EEEeCC----CcEEEEeCCC
Q psy3840 71 -CE--QQF-SFHSAPALDVDWQSNTSF-ASCSTD----QHIHVCKLHS 109 (131)
Q Consensus 71 -~~--~~~-~~~~~~v~~~~~~~~~~~-~~~~~d----~~i~i~d~~~ 109 (131)
.. ..+ ........++.|+.++.+ +....+ ..|..+|+.+
T Consensus 307 ~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 307 AHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp TCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 12 223 223345566666555554 343333 3577777764
No 265
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.24 E-value=0.014 Score=38.54 Aligned_cols=105 Identities=9% Similarity=0.094 Sum_probs=63.2
Q ss_pred cccCCCCEEEEEeC-CC----eEEEEcCCCCce--eecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeee
Q psy3840 3 SSRNNGSFLATGSY-DG----YARIWTSDGSLK--STLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQ 74 (131)
Q Consensus 3 ~~~~~~~~l~~~~~-d~----~i~~~~~~~~~~--~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~ 74 (131)
+++++++.|+++.. ++ .+..++..+... ..+.. ......++++| ++.++++-..++.|..++...+.....
T Consensus 185 a~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~ 263 (430)
T 3tc9_A 185 CWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL 263 (430)
T ss_dssp EECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 35778886666554 22 233344333222 12221 22346778999 777777776788999999876654222
Q ss_pred eec-CCCCeEEEEEcCCCc-EE-EEeCCCcEEEEeCC
Q psy3840 75 FSF-HSAPALDVDWQSNTS-FA-SCSTDQHIHVCKLH 108 (131)
Q Consensus 75 ~~~-~~~~v~~~~~~~~~~-~~-~~~~d~~i~i~d~~ 108 (131)
... .......++++|++. ++ +-...+.|..++..
T Consensus 264 ~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 264 FTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 221 223467899999987 54 44456789988765
No 266
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.24 E-value=0.0025 Score=38.50 Aligned_cols=97 Identities=7% Similarity=-0.090 Sum_probs=58.7
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCC-Cce-----eecc---cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee-
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDG-SLK-----STLG---QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE- 72 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~-~~~-----~~~~---~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~- 72 (131)
+|+|++.+.++ .+|.+.-.+... ... .+.. +... ..++.|.|++.+.++ .||.|+-++..+...-
T Consensus 47 af~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~ 121 (236)
T 1tl2_A 47 FLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDN 121 (236)
T ss_dssp EECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCC
T ss_pred EECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCc
Confidence 57888886666 677766666532 110 1111 1112 478899999999888 5588887776432111
Q ss_pred ----eee--ecCCCCeEEEEEcCCCcEEEEeCCCcEEEE
Q psy3840 73 ----QQF--SFHSAPALDVDWQSNTSFASCSTDQHIHVC 105 (131)
Q Consensus 73 ----~~~--~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~ 105 (131)
... ...=..+..+.+.|++.|.+.. |+.++-.
T Consensus 122 Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~ 159 (236)
T 1tl2_A 122 WIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKA 159 (236)
T ss_dssp HHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEE
T ss_pred eeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEec
Confidence 011 1111357889999999976666 7776433
No 267
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.18 E-value=0.017 Score=38.22 Aligned_cols=108 Identities=11% Similarity=0.002 Sum_probs=61.0
Q ss_pred ccCC--CCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCC---Cc-EEEEECCCcce-eeeee
Q psy3840 4 SRNN--GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD---KT-TIIWDAASGQC-EQQFS 76 (131)
Q Consensus 4 ~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d---~~-i~~~d~~~~~~-~~~~~ 76 (131)
++|+ ...|+.+...+.|+.++.....+..+.........+++++++.++++.... .. +...+...+.. ...+.
T Consensus 146 vd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~ 225 (433)
T 4hw6_A 146 FDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC 225 (433)
T ss_dssp ECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE
T ss_pred EccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc
Confidence 4552 345555544478888888655555544444567899999999955544321 11 33333222211 01122
Q ss_pred cCCCCeEEEEEcC-CCcEEEE-eCCCcEEEEeCCCCee
Q psy3840 77 FHSAPALDVDWQS-NTSFASC-STDQHIHVCKLHSDKP 112 (131)
Q Consensus 77 ~~~~~v~~~~~~~-~~~~~~~-~~d~~i~i~d~~~~~~ 112 (131)
.......++++| ++.+..+ ..++.|+.+|..++..
T Consensus 226 -~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~ 262 (433)
T 4hw6_A 226 -NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL 262 (433)
T ss_dssp -ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred -ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence 223456678888 6775544 4567888888876654
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.13 E-value=0.014 Score=40.58 Aligned_cols=105 Identities=16% Similarity=0.188 Sum_probs=64.2
Q ss_pred CCCEEEEEeCCC-----------eEEEEcCCCCceeecc----cccccEEEEEEcCCCCEEEEEeC-CCcEEEEECCCcc
Q psy3840 7 NGSFLATGSYDG-----------YARIWTSDGSLKSTLG----QHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQ 70 (131)
Q Consensus 7 ~~~~l~~~~~d~-----------~i~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~s~~~-d~~i~~~d~~~~~ 70 (131)
++++++.|+.+. .+.+||........+. .+......+++.++++.++.|+. +..+.+||+.+.+
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~ 276 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS 276 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence 777888876532 5788997633322221 12233345677889999999885 5689999987653
Q ss_pred e--eeeeecCCCCeEEEEEcCCCc-EEEEe-CC-----CcEEEEeCCCCee
Q psy3840 71 C--EQQFSFHSAPALDVDWQSNTS-FASCS-TD-----QHIHVCKLHSDKP 112 (131)
Q Consensus 71 ~--~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d-----~~i~i~d~~~~~~ 112 (131)
- +..+...+ .-.+....++++ ++.|+ .+ ..+.+||..+.+-
T Consensus 277 W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 277 WIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp EEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred eeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 2 22222211 123455566777 66776 33 4689999987653
No 269
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.11 E-value=0.022 Score=36.49 Aligned_cols=105 Identities=6% Similarity=0.042 Sum_probs=69.9
Q ss_pred cCCCCEEEEEeC-------------CCeEEEEcCC----CCceeecc--ccc-----------ccEEEEEEcCCCCEEEE
Q psy3840 5 RNNGSFLATGSY-------------DGYARIWTSD----GSLKSTLG--QHK-----------GPIFALKWNKRGNYILS 54 (131)
Q Consensus 5 ~~~~~~l~~~~~-------------d~~i~~~~~~----~~~~~~~~--~~~-----------~~i~~~~~~~~~~~~~s 54 (131)
.+++.++++... +..+..||+. ++.+.... ... .....++..++|+..++
T Consensus 74 D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt 153 (334)
T 2p9w_A 74 DNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA 153 (334)
T ss_dssp SSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE
T ss_pred CCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe
Confidence 466666665431 5678889987 55544332 111 24789999999999999
Q ss_pred EeCC-CcEEEEECCCcceeeeee------cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC
Q psy3840 55 AGVD-KTTIIWDAASGQCEQQFS------FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSD 110 (131)
Q Consensus 55 ~~~d-~~i~~~d~~~~~~~~~~~------~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~ 110 (131)
++.. +.|...+.... .+..+. ......+.|+++|++. |+.....+.+..+|+++.
T Consensus 154 ~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 154 FALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred CCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 9888 88777776543 333221 1122366899999986 666655899999998743
No 270
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.05 E-value=0.03 Score=37.20 Aligned_cols=102 Identities=14% Similarity=0.156 Sum_probs=64.3
Q ss_pred CCCEEEEEeCCCeEEEEcCC-CCceeecccc----cccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc-----------
Q psy3840 7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQH----KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ----------- 70 (131)
Q Consensus 7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~----~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~----------- 70 (131)
++..++.+ .++.||.-++. +...+.+..- -+.+..+..+|+|.+++..+.. .+.+..+..+.
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccc
Confidence 34444443 23456655654 3223332221 1246779999999999988555 68888776321
Q ss_pred -eeeeeec------CCCCeEEEEEcCC----CcEEEEeCCCcEEEEeCCCC
Q psy3840 71 -CEQQFSF------HSAPALDVDWQSN----TSFASCSTDQHIHVCKLHSD 110 (131)
Q Consensus 71 -~~~~~~~------~~~~v~~~~~~~~----~~~~~~~~d~~i~i~d~~~~ 110 (131)
..+.+.- ...+|..+.|+|- +.+++-..|+.|++||+...
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s 159 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS 159 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence 1112221 2467999999994 33899999999999999863
No 271
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.03 E-value=0.015 Score=39.89 Aligned_cols=108 Identities=9% Similarity=0.049 Sum_probs=69.9
Q ss_pred CCEEEEEeC-CCeEEEEcC-C-CCceeecccccc-c----------EEEEEEcCCCCEEEEEeCCCcEEEEECCCcceee
Q psy3840 8 GSFLATGSY-DGYARIWTS-D-GSLKSTLGQHKG-P----------IFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ 73 (131)
Q Consensus 8 ~~~l~~~~~-d~~i~~~~~-~-~~~~~~~~~~~~-~----------i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~ 73 (131)
+..+++++. ++.|..+|. . |+.+.+...... . ...+.. .+..++.++.++.+..+|..+++.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 456777777 788999998 4 777665543211 0 011122 35677888889999999999999887
Q ss_pred eeecCCC----CeE-EEEEcCCCcEEEEeC------CCcEEEEeCCCCeeeEEEec
Q psy3840 74 QFSFHSA----PAL-DVDWQSNTSFASCST------DQHIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 74 ~~~~~~~----~v~-~~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~ 118 (131)
....... .+. .... .++.++.+.. ++.|+.+|.++++.+.++..
T Consensus 140 ~~~~~~~~~~~~~~~~P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EecCCCCCccceeccCCEE-ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 6553210 111 1111 1566655554 78999999999999887754
No 272
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.0018 Score=41.57 Aligned_cols=111 Identities=11% Similarity=0.095 Sum_probs=70.5
Q ss_pred CCEEEEEeCCCeEEEEcCC-CCceeecccc-cccEEEEEE--cCCCCEEEEE--eCCCcEEEEECCCcceeeeeec----
Q psy3840 8 GSFLATGSYDGYARIWTSD-GSLKSTLGQH-KGPIFALKW--NKRGNYILSA--GVDKTTIIWDAASGQCEQQFSF---- 77 (131)
Q Consensus 8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~-~~~i~~~~~--~~~~~~~~s~--~~d~~i~~~d~~~~~~~~~~~~---- 77 (131)
+..+++++.||.|.-.|.. |+...++... ..+.....- .+.+..++.+ ..||.+..++..+|.....+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 4578889999999999976 8777776653 122222110 0112234433 5799999999988855433321
Q ss_pred CCCCeEE---EEE------cCCCcEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840 78 HSAPALD---VDW------QSNTSFASCSTDQHIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 78 ~~~~v~~---~~~------~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 118 (131)
...++.. ... +.++.+++++.++.+...|+++|+.+.++..
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 1112211 000 1356688999999999999999999998864
No 273
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.81 E-value=0.041 Score=34.87 Aligned_cols=112 Identities=7% Similarity=-0.074 Sum_probs=66.9
Q ss_pred cCCCCEEEEEe--CCCeEEEEcCCCCceeecc-cccccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCcceeeeeecCCC
Q psy3840 5 RNNGSFLATGS--YDGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCEQQFSFHSA 80 (131)
Q Consensus 5 ~~~~~~l~~~~--~d~~i~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~s~~-~d~~i~~~d~~~~~~~~~~~~~~~ 80 (131)
.|.+..++... ..+.|...+..|.....+. ..-.....++++|++..++.+. ..+.|..+|+..............
T Consensus 130 dp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~ 209 (318)
T 3sov_A 130 DPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP 209 (318)
T ss_dssp EGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCS
T ss_pred eCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCC
Confidence 44444444444 2467777777765443332 2223457899999666555554 567899999864332222222334
Q ss_pred CeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEE
Q psy3840 81 PALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSF 116 (131)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 116 (131)
....+++..+..+.+-...+.|..++..+++.+..+
T Consensus 210 ~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 210 HPFALTLFEDILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp CEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEE
Confidence 566777765444566556678999998777655554
No 274
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.66 E-value=0.098 Score=37.17 Aligned_cols=103 Identities=12% Similarity=0.072 Sum_probs=67.2
Q ss_pred CCCEEEEEeCCCeEEEEcCCCCceeecc-----cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee-----
Q psy3840 7 NGSFLATGSYDGYARIWTSDGSLKSTLG-----QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS----- 76 (131)
Q Consensus 7 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~----- 76 (131)
+++.|..|+.++-+..+|........+. .....|.++...+++.+.+... + -+..||..+++......
T Consensus 416 ~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~~~~~~~~~~ 493 (795)
T 4a2l_A 416 KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQRSFTTIEKEKDGT 493 (795)
T ss_dssp TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTTEEEECCBCTTCC
T ss_pred CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCCeEEEcccccccc
Confidence 4444777777677888887643333332 1245789999888888776654 4 58889987764322111
Q ss_pred -cCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCee
Q psy3840 77 -FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKP 112 (131)
Q Consensus 77 -~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 112 (131)
.....+.++...+++.+-.++. +.+..||..+++.
T Consensus 494 ~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 494 PVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI 529 (795)
T ss_dssp BCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE
T ss_pred ccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE
Confidence 1235688888888888666666 5688888776554
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.62 E-value=0.067 Score=34.80 Aligned_cols=101 Identities=11% Similarity=-0.062 Sum_probs=60.6
Q ss_pred EEEEEeCCCeEEEEcCCCCceeecc-cccccEEEEEEcCCCCEEEEEeC-C-CcEEEEECCCcceeeeeecCCCCeEEEE
Q psy3840 10 FLATGSYDGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGNYILSAGV-D-KTTIIWDAASGQCEQQFSFHSAPALDVD 86 (131)
Q Consensus 10 ~l~~~~~d~~i~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~s~~~-d-~~i~~~d~~~~~~~~~~~~~~~~v~~~~ 86 (131)
+.++-...+.|.+.++.+.....+. ........++++|.+..++.... . +.|..+++............-.....++
T Consensus 173 lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla 252 (386)
T 3v65_B 173 LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLT 252 (386)
T ss_dssp EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEE
Confidence 3344444567777777755433332 22345688999996665554443 4 6788888764433222222334578899
Q ss_pred EcCC-CcE-EEEeCCCcEEEEeCCCC
Q psy3840 87 WQSN-TSF-ASCSTDQHIHVCKLHSD 110 (131)
Q Consensus 87 ~~~~-~~~-~~~~~d~~i~i~d~~~~ 110 (131)
++|+ ++| ++-...+.|..+|+...
T Consensus 253 vd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 253 IDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp EEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred EeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 9975 555 44445678999988643
No 276
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.60 E-value=0.065 Score=34.38 Aligned_cols=105 Identities=4% Similarity=0.024 Sum_probs=67.8
Q ss_pred ccCCCCEEEEEe-CCCeEEEEcCCCCc-eeecccc-----c--ccEEEEEE---cCCCCEEEEEe-------------CC
Q psy3840 4 SRNNGSFLATGS-YDGYARIWTSDGSL-KSTLGQH-----K--GPIFALKW---NKRGNYILSAG-------------VD 58 (131)
Q Consensus 4 ~~~~~~~l~~~~-~d~~i~~~~~~~~~-~~~~~~~-----~--~~i~~~~~---~~~~~~~~s~~-------------~d 58 (131)
|.+....+..++ ..++|..|+..+.. ....... . .....+.+ .|+++++++.. .+
T Consensus 20 wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~ 99 (334)
T 2p9w_A 20 YDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGA 99 (334)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSC
T ss_pred CcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCC
Confidence 555556666655 68999999987332 2222211 1 13578999 68887777544 25
Q ss_pred CcEEEEECC---Ccceeeeee--c-----------CCCCeEEEEEcCCCc-EEEEeCC-CcEEEEeCC
Q psy3840 59 KTTIIWDAA---SGQCEQQFS--F-----------HSAPALDVDWQSNTS-FASCSTD-QHIHVCKLH 108 (131)
Q Consensus 59 ~~i~~~d~~---~~~~~~~~~--~-----------~~~~v~~~~~~~~~~-~~~~~~d-~~i~i~d~~ 108 (131)
..+..+|+. +++.+.... . .......++..++|. +++++.. +.|...+..
T Consensus 100 ~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 100 SSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp CEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred CEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 778899998 777654433 1 112478899999987 6777776 666666554
No 277
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.59 E-value=0.01 Score=40.87 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=48.5
Q ss_pred CCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC-eEEEEEcCCCc
Q psy3840 17 DGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP-ALDVDWQSNTS 92 (131)
Q Consensus 17 d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~ 92 (131)
+|.|..||+. ++.+.+..... +...-.....+.+++.++.|+.++.+|.++++.+..+...... ..-+.|..+++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~ 541 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE
Confidence 5778888976 66665544321 2211111224667888999999999999999999888754322 12355656776
No 278
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.57 E-value=0.068 Score=34.26 Aligned_cols=112 Identities=9% Similarity=-0.049 Sum_probs=66.4
Q ss_pred ccCCCCEEEEEe-CC-CeEEEEcCCCCceeeccc-ccccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCcceeeeeecCC
Q psy3840 4 SRNNGSFLATGS-YD-GYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCEQQFSFHS 79 (131)
Q Consensus 4 ~~~~~~~l~~~~-~d-~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~s~~-~d~~i~~~d~~~~~~~~~~~~~~ 79 (131)
+.|.+..++... .. +.|..++..+.....+.. .-.....++++|++..+..+. ..+.|..+|+........+....
T Consensus 166 vdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~ 245 (349)
T 3v64_C 166 LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGL 245 (349)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred EecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCC
Confidence 345444444433 34 678888877655444322 233568899998666555554 46789999986543322232233
Q ss_pred CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEE
Q psy3840 80 APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSF 116 (131)
Q Consensus 80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~ 116 (131)
.....+++. ++. +.+-...+.|..++..+++.+..+
T Consensus 246 ~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 246 PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 456677774 445 555556678888886666655544
No 279
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.45 E-value=0.083 Score=33.86 Aligned_cols=102 Identities=11% Similarity=-0.063 Sum_probs=61.3
Q ss_pred CEEEEEeCCCeEEEEcCCCCceeecc-cccccEEEEEEcCCCCEEEEEe-CC-CcEEEEECCCcceeeeeecCCCCeEEE
Q psy3840 9 SFLATGSYDGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGNYILSAG-VD-KTTIIWDAASGQCEQQFSFHSAPALDV 85 (131)
Q Consensus 9 ~~l~~~~~d~~i~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~s~~-~d-~~i~~~d~~~~~~~~~~~~~~~~v~~~ 85 (131)
++.++-...+.|.+.+..+.....+. ........++++|.+..++... .. +.|...++............-.....+
T Consensus 129 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGl 208 (349)
T 3v64_C 129 KLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGL 208 (349)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEE
T ss_pred eEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceE
Confidence 33344444667888887765443332 2234568899999555544444 44 778888876433222222223457889
Q ss_pred EEcCC-CcE-EEEeCCCcEEEEeCCCC
Q psy3840 86 DWQSN-TSF-ASCSTDQHIHVCKLHSD 110 (131)
Q Consensus 86 ~~~~~-~~~-~~~~~d~~i~i~d~~~~ 110 (131)
+++|+ +++ ++-...+.|..+|+...
T Consensus 209 a~d~~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 209 TIDYAGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 99985 555 44445678999998643
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.42 E-value=0.093 Score=34.13 Aligned_cols=101 Identities=14% Similarity=0.018 Sum_probs=61.5
Q ss_pred CEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEE-EEeCCCcEEEEECCCcceeeeeecCCCCeEEEEE
Q psy3840 9 SFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 87 (131)
Q Consensus 9 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 87 (131)
.+|+.+ ....|+..++.+.....+.........++|++.+..++ +-...+.|+.+++..+.....+.........+++
T Consensus 88 ~~l~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glav 166 (386)
T 3v65_B 88 PVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAV 166 (386)
T ss_dssp CEEEEE-CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEE
T ss_pred ceeEee-cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEE
Confidence 344443 34568888877554444433345678999998555444 5455788999998766543333322234567888
Q ss_pred cCC-CcE-EEEeCCCcEEEEeCCCC
Q psy3840 88 QSN-TSF-ASCSTDQHIHVCKLHSD 110 (131)
Q Consensus 88 ~~~-~~~-~~~~~d~~i~i~d~~~~ 110 (131)
.+. +.+ ++-...+.|.+.++...
T Consensus 167 d~~~g~lY~~d~~~~~I~~~~~dg~ 191 (386)
T 3v65_B 167 DWVHDKLYWTDSGTSRIEVANLDGA 191 (386)
T ss_dssp ETTTTEEEEEETTTTEEEECBTTSC
T ss_pred EeCCCeEEEEcCCCCeEEEEeCCCC
Confidence 864 454 44455667888887643
No 281
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.37 E-value=0.16 Score=36.16 Aligned_cols=100 Identities=12% Similarity=0.047 Sum_probs=66.0
Q ss_pred EEEEEeCCCeEEEEcCCCCceeecc---------cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec---
Q psy3840 10 FLATGSYDGYARIWTSDGSLKSTLG---------QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF--- 77 (131)
Q Consensus 10 ~l~~~~~d~~i~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~--- 77 (131)
.|..|+.++-|..|+........+. .....|.++..++++..+..|..++-+..+|..+++.. .+..
T Consensus 369 ~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~ 447 (795)
T 4a2l_A 369 NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE-NFNQRNS 447 (795)
T ss_dssp CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE-EECTTTS
T ss_pred CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE-EeecCCC
Confidence 4666777767888887633332221 11356889998888884455666666899998876532 2221
Q ss_pred --CCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCe
Q psy3840 78 --HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDK 111 (131)
Q Consensus 78 --~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 111 (131)
....|.++...+++.+..++. +.+..||.++++
T Consensus 448 ~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~ 482 (795)
T 4a2l_A 448 QLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRS 482 (795)
T ss_dssp CCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTE
T ss_pred CcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCe
Confidence 234688888888888666666 558889987654
No 282
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.35 E-value=0.088 Score=33.17 Aligned_cols=99 Identities=9% Similarity=-0.086 Sum_probs=61.0
Q ss_pred EEEEEeCCCeEEEEcCCCCceeeccc-ccccEEEEEEcCCCCEEEEEeCC--CcEEEEECCCcceeeeee-cCCCCeEEE
Q psy3840 10 FLATGSYDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSAGVD--KTTIIWDAASGQCEQQFS-FHSAPALDV 85 (131)
Q Consensus 10 ~l~~~~~d~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~d--~~i~~~d~~~~~~~~~~~-~~~~~v~~~ 85 (131)
+.++-...+.|.+++..++....+.. .......++++|.+..++.+... +.|...++... ....+. ..-.....+
T Consensus 91 ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gl 169 (316)
T 1ijq_A 91 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGI 169 (316)
T ss_dssp EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEE
T ss_pred EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEE
Confidence 33443456778888877655443322 23456889999966655554443 67888887533 223332 223457889
Q ss_pred EEcCC-CcEE-EEeCCCcEEEEeCCC
Q psy3840 86 DWQSN-TSFA-SCSTDQHIHVCKLHS 109 (131)
Q Consensus 86 ~~~~~-~~~~-~~~~d~~i~i~d~~~ 109 (131)
+++++ +++. +-...+.|..+|+..
T Consensus 170 a~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 170 TLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEeccCCEEEEEECCCCeEEEEecCC
Confidence 99986 4554 444566899999874
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.35 E-value=0.11 Score=34.05 Aligned_cols=103 Identities=9% Similarity=-0.066 Sum_probs=63.8
Q ss_pred CCEEEEEeCCCeEEEEcCCCCceeeccc-ccccEEEEEEcCCCCEEEEEeC--CCcEEEEECCCcceeeeeecCCCCeEE
Q psy3840 8 GSFLATGSYDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSAGV--DKTTIIWDAASGQCEQQFSFHSAPALD 84 (131)
Q Consensus 8 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~ 84 (131)
+++.++-...+.|.+.++.+.....+.. .......++++|.+..++.... .+.|...++............-.....
T Consensus 171 ~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~g 250 (400)
T 3p5b_L 171 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG 250 (400)
T ss_dssp TEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEE
T ss_pred CceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEE
Confidence 3344444446778888887665444432 2345688999996655555443 467888887654333323333356788
Q ss_pred EEEcCC-CcEEEE-eCCCcEEEEeCCCC
Q psy3840 85 VDWQSN-TSFASC-STDQHIHVCKLHSD 110 (131)
Q Consensus 85 ~~~~~~-~~~~~~-~~d~~i~i~d~~~~ 110 (131)
++++++ ++|..+ ...+.|..+|+...
T Consensus 251 lavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (400)
T 3p5b_L 251 ITLDLLSGRLYWVDSKLHSISSIDVNGG 278 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence 999976 455444 44568999998644
No 284
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.30 E-value=0.032 Score=39.30 Aligned_cols=114 Identities=8% Similarity=-0.029 Sum_probs=63.2
Q ss_pred ccCCCCEEEEEeC--CCeEEEEcCCCCceeecc-cccccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCcceeeeee--c
Q psy3840 4 SRNNGSFLATGSY--DGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFS--F 77 (131)
Q Consensus 4 ~~~~~~~l~~~~~--d~~i~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~s~~~d~~i~~~d~~~~~~~~~~~--~ 77 (131)
+.|.+.+|+.... .+.|..+++.+.....+. ..-.....|+++|++. ++++-...+.|..+++........+. .
T Consensus 503 vDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~ 582 (699)
T 1n7d_A 503 VDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK 582 (699)
T ss_dssp CCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSS
T ss_pred EccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCC
Confidence 3444444443332 256776666654433322 1123456789998654 44555557789999986433222221 1
Q ss_pred CCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840 78 HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 78 ~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 117 (131)
.......+++..+..+++....+.|..+|..+++.+..+.
T Consensus 583 ~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 583 RLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp SCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred cCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEee
Confidence 1122345556555435566666789999988777666653
No 285
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.21 E-value=0.12 Score=33.21 Aligned_cols=92 Identities=11% Similarity=0.198 Sum_probs=52.3
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCCce--eec---ccccccEEEEEEcCC---CCEEEEEeC-C-----CcEEEEECCC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGSLK--STL---GQHKGPIFALKWNKR---GNYILSAGV-D-----KTTIIWDAAS 68 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~--~~~---~~~~~~i~~~~~~~~---~~~~~s~~~-d-----~~i~~~d~~~ 68 (131)
++.|+|+++++ ..++.|.+++ .++.. ..+ .........++++|+ +..++.... . ..|..++...
T Consensus 37 a~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~ 114 (352)
T 2ism_A 37 AFLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLG 114 (352)
T ss_dssp EECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECS
T ss_pred EEcCCCeEEEE-eCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCC
Confidence 46788885555 5678999888 43321 111 112346789999998 444444333 2 5677777764
Q ss_pred cc-----ee-eeee---cCCCCeEEEEEcCCCcEEEE
Q psy3840 69 GQ-----CE-QQFS---FHSAPALDVDWQSNTSFASC 96 (131)
Q Consensus 69 ~~-----~~-~~~~---~~~~~v~~~~~~~~~~~~~~ 96 (131)
+. .+ ..+. ........++|.|++.|..+
T Consensus 115 ~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 115 ERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVT 151 (352)
T ss_dssp SCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEE
T ss_pred CCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEE
Confidence 31 11 1132 11123468999999885443
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.20 E-value=0.052 Score=35.95 Aligned_cols=70 Identities=9% Similarity=0.093 Sum_probs=46.5
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeeeeec--CCCCeEEEEEcCCCc-EE-EEeCCCcEEEEeCC
Q psy3840 39 PIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSF--HSAPALDVDWQSNTS-FA-SCSTDQHIHVCKLH 108 (131)
Q Consensus 39 ~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~-~~-~~~~d~~i~i~d~~ 108 (131)
....++++| ++.++++-..++.|+.+|..++.....+.. .......++++|++. +. +-...+.|+.++..
T Consensus 229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 345678899 777776766788899999887765222221 112234699999976 54 44456789997765
No 287
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.17 E-value=0.028 Score=39.54 Aligned_cols=101 Identities=9% Similarity=-0.076 Sum_probs=57.7
Q ss_pred CEEEEEeCCCeEEEEcCCCCceeeccc-ccccEEEEEEcCCCCEEEEEeC--CCcEEEEECCCcceeeeeecCCCCeEEE
Q psy3840 9 SFLATGSYDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSAGV--DKTTIIWDAASGQCEQQFSFHSAPALDV 85 (131)
Q Consensus 9 ~~l~~~~~d~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~ 85 (131)
+++++-...+.|.++++.+.....+.. .......++++|.+..|+.+.. .+.|..+++............-.....|
T Consensus 466 ~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGl 545 (699)
T 1n7d_A 466 NIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI 545 (699)
T ss_dssp BCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCE
T ss_pred cEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEE
Confidence 333443446678888887655444432 2234567888985554444333 2677777765332211112222345779
Q ss_pred EEcCC-CcE-EEEeCCCcEEEEeCCC
Q psy3840 86 DWQSN-TSF-ASCSTDQHIHVCKLHS 109 (131)
Q Consensus 86 ~~~~~-~~~-~~~~~d~~i~i~d~~~ 109 (131)
+++|+ ++| ++-...+.|..+++..
T Consensus 546 avd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 546 TLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp EECTTTCCEEEEETTTTEEEEECSSS
T ss_pred EEeccCCEEEEEecCCCeEEEEccCC
Confidence 99986 455 4444566899999864
No 288
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.06 E-value=0.23 Score=35.21 Aligned_cols=101 Identities=10% Similarity=0.033 Sum_probs=64.2
Q ss_pred CEEEEEeCCCeEEEEcCCCCceeecc---cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC-----CC
Q psy3840 9 SFLATGSYDGYARIWTSDGSLKSTLG---QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH-----SA 80 (131)
Q Consensus 9 ~~l~~~~~d~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~-----~~ 80 (131)
..|..|+.++-+..++........+. .....|.++...+++.+.+... +-+..+|..+++........ ..
T Consensus 418 g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 495 (781)
T 3v9f_A 418 GNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH--AGVFVIDLASKKVIHHYDTSNSQLLEN 495 (781)
T ss_dssp SCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET--TEEEEEESSSSSCCEEECTTTSSCSCS
T ss_pred CCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC--CceEEEeCCCCeEEecccCcccccccc
Confidence 34555666566777887533333332 1345788988888887666543 45888998776543222111 35
Q ss_pred CeEEEEEcCCCcEEEEeCCCcEEEEeCCCCe
Q psy3840 81 PALDVDWQSNTSFASCSTDQHIHVCKLHSDK 111 (131)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 111 (131)
.+.++...+++.+-.++.++-+..+|.++++
T Consensus 496 ~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 496 FVRSIAQDSEGRFWIGTFGGGVGIYTPDMQL 526 (781)
T ss_dssp CEEEEEECTTCCEEEEESSSCEEEECTTCCE
T ss_pred eeEEEEEcCCCCEEEEEcCCCEEEEeCCCCe
Confidence 6888988888887667765567888876553
No 289
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.95 E-value=0.21 Score=33.85 Aligned_cols=104 Identities=10% Similarity=0.022 Sum_probs=62.5
Q ss_pred ccC-CCCEEEEEe-CCCeEEEEcCCCCceeecccc----cccEEEEEE-------cCCCCEEEEEeCCC-------cEEE
Q psy3840 4 SRN-NGSFLATGS-YDGYARIWTSDGSLKSTLGQH----KGPIFALKW-------NKRGNYILSAGVDK-------TTII 63 (131)
Q Consensus 4 ~~~-~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~----~~~i~~~~~-------~~~~~~~~s~~~d~-------~i~~ 63 (131)
++| ++..|+++. ..+.|++.|...+.+..+..- ......++| ++++..++.+...+ .+.+
T Consensus 146 ~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~ 225 (496)
T 3kya_A 146 FDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYI 225 (496)
T ss_dssp EETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEE
T ss_pred EccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEE
Confidence 455 244444443 346788888886666554332 124789999 99998666665543 2566
Q ss_pred EECCC-ccee-----eeeecCCCCeEEEEEcCC-CcE-EEEeCCCcEEEEeCC
Q psy3840 64 WDAAS-GQCE-----QQFSFHSAPALDVDWQSN-TSF-ASCSTDQHIHVCKLH 108 (131)
Q Consensus 64 ~d~~~-~~~~-----~~~~~~~~~v~~~~~~~~-~~~-~~~~~d~~i~i~d~~ 108 (131)
++... +... ..+.. ......++.+|+ +.| ++-..++.|+.+|+.
T Consensus 226 i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 226 IKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp EECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred EecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 65433 2221 22222 234567788995 554 455567789999987
No 290
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=95.88 E-value=0.19 Score=32.84 Aligned_cols=101 Identities=14% Similarity=-0.011 Sum_probs=62.4
Q ss_pred EEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEE-eCCCcEEEEECCCc----ceeeeeecCCCCeEE
Q psy3840 10 FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASG----QCEQQFSFHSAPALD 84 (131)
Q Consensus 10 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~-~~d~~i~~~d~~~~----~~~~~~~~~~~~v~~ 84 (131)
+|+.+ ....|+..++.+.....+......+..++|++....++.. ...+.|+.+++... .....+.........
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 163 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 163 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred eeEEe-ccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence 44444 3567888888755444444445678899999865555544 45788888888652 222223323346778
Q ss_pred EEEcC-CCcE-EEEeCCCcEEEEeCCCCe
Q psy3840 85 VDWQS-NTSF-ASCSTDQHIHVCKLHSDK 111 (131)
Q Consensus 85 ~~~~~-~~~~-~~~~~d~~i~i~d~~~~~ 111 (131)
+++.+ .+.| .+-...+.|.+.++....
T Consensus 164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~ 192 (400)
T 3p5b_L 164 LAVDWIHSNIYWTDSVLGTVSVADTKGVK 192 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTTCS
T ss_pred EEEEecCCceEEEECCCCeEEEEeCCCCc
Confidence 88887 4554 444556788888887543
No 291
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=95.88 E-value=0.17 Score=32.08 Aligned_cols=101 Identities=12% Similarity=-0.011 Sum_probs=61.1
Q ss_pred CEEEEEeCCCeEEEEcCCCCceeecc-cccccEEEEEEcCCCCEEEEEeC--CCcEEEEECCCcceeeeeecCCCCeEEE
Q psy3840 9 SFLATGSYDGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGNYILSAGV--DKTTIIWDAASGQCEQQFSFHSAPALDV 85 (131)
Q Consensus 9 ~~l~~~~~d~~i~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~ 85 (131)
++..+-...+.|.+++..+.....+. ........++++|.+..++.... .+.|...++............-.....+
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl 171 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 171 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence 33344444667888887765444332 33345688999996555555543 5778888875433222222223456889
Q ss_pred EEcCC-CcEE-EEeCCCcEEEEeCCC
Q psy3840 86 DWQSN-TSFA-SCSTDQHIHVCKLHS 109 (131)
Q Consensus 86 ~~~~~-~~~~-~~~~d~~i~i~d~~~ 109 (131)
+++++ +++. +-...+.|..+|+..
T Consensus 172 avd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 172 TLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEeccCCEEEEEECCCCEEEEEcCCC
Confidence 99985 5554 444567899999864
No 292
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.80 E-value=0.12 Score=31.32 Aligned_cols=97 Identities=9% Similarity=-0.071 Sum_probs=57.0
Q ss_pred CCCEEEEEeCCCeEEEEcCCCCce------eecccc--cccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee------
Q psy3840 7 NGSFLATGSYDGYARIWTSDGSLK------STLGQH--KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE------ 72 (131)
Q Consensus 7 ~~~~l~~~~~d~~i~~~~~~~~~~------~~~~~~--~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~------ 72 (131)
...+|+...+| +++.=....... .+..+. =..+..++|+|++.+.+. .+|.++-.+..+....
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 34566777777 666555442211 111122 136779999999997777 7777776666442211
Q ss_pred eeee--cCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCC
Q psy3840 73 QQFS--FHSAPALDVDWQSNTSFASCSTDQHIHVCKLH 108 (131)
Q Consensus 73 ~~~~--~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~ 108 (131)
..+- +-. ...++.|.|++.|... .|+.|+-++-.
T Consensus 80 t~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP 115 (236)
T 1tl2_A 80 KKIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPP 115 (236)
T ss_dssp EEEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCC
T ss_pred cEecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCC
Confidence 1111 111 1467889999986666 66888877753
No 293
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=95.78 E-value=0.17 Score=31.52 Aligned_cols=73 Identities=7% Similarity=-0.012 Sum_probs=50.4
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCcEEEEeC--CC-cEEEEeCCCCee
Q psy3840 38 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCST--DQ-HIHVCKLHSDKP 112 (131)
Q Consensus 38 ~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--d~-~i~i~d~~~~~~ 112 (131)
.....++++++++++++...++.|..+|.... ....+. ....+..+++.++++++.+.. ++ .|..+|..+++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence 45678999999997777767889999997653 333332 234678899999988554442 22 477777777654
No 294
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.64 E-value=0.39 Score=34.55 Aligned_cols=104 Identities=10% Similarity=-0.075 Sum_probs=64.7
Q ss_pred CCCEEE-EEeCCCeEEEEcCCCCceeeccc-ccccEEEEEEcCCCCEEEEEeC--CCcEEEEECCCcceeeeeecCCCCe
Q psy3840 7 NGSFLA-TGSYDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSAGV--DKTTIIWDAASGQCEQQFSFHSAPA 82 (131)
Q Consensus 7 ~~~~l~-~~~~d~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~v 82 (131)
.++.|+ +-...+.|.+.++.+.....+.. .......|+++|....|+.... .+.|...++........+...-...
T Consensus 481 ~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P 560 (791)
T 3m0c_C 481 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 560 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCE
T ss_pred cCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCc
Confidence 343444 44446788888888766555432 3345789999997555555543 3678888876544333333333567
Q ss_pred EEEEEcCC-CcEEEE-eCCCcEEEEeCCCC
Q psy3840 83 LDVDWQSN-TSFASC-STDQHIHVCKLHSD 110 (131)
Q Consensus 83 ~~~~~~~~-~~~~~~-~~d~~i~i~d~~~~ 110 (131)
..|++++. ++|+.+ ...+.|..+++...
T Consensus 561 ~GLavD~~~~~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 561 NGITLDLLSGRLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred eEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence 88999875 555444 44567888888644
No 295
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=95.63 E-value=0.21 Score=31.44 Aligned_cols=100 Identities=14% Similarity=-0.016 Sum_probs=59.1
Q ss_pred EEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEE-EEEeCCCcEEEEECCC----cceeeeeecCCCCeEE
Q psy3840 10 FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYI-LSAGVDKTTIIWDAAS----GQCEQQFSFHSAPALD 84 (131)
Q Consensus 10 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~s~~~d~~i~~~d~~~----~~~~~~~~~~~~~v~~ 84 (131)
+|+.+. ...|+..++.+.....+.........++|++.+..+ .+-..++.|..+++.. ......+.........
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEEC-CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 344443 456888888754333333334567899999865544 4555578899999875 2222222222234577
Q ss_pred EEEcCC-CcE-EEEeCCCcEEEEeCCCC
Q psy3840 85 VDWQSN-TSF-ASCSTDQHIHVCKLHSD 110 (131)
Q Consensus 85 ~~~~~~-~~~-~~~~~d~~i~i~d~~~~ 110 (131)
+++++. +.+ ++-...+.|.++++...
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 888864 554 45456678999988744
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.58 E-value=0.31 Score=33.05 Aligned_cols=103 Identities=5% Similarity=0.013 Sum_probs=61.0
Q ss_pred ccCCCCEEEEEeCCC-------eEEEEcCCC--Cce-----eecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECC-
Q psy3840 4 SRNNGSFLATGSYDG-------YARIWTSDG--SLK-----STLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAA- 67 (131)
Q Consensus 4 ~~~~~~~l~~~~~d~-------~i~~~~~~~--~~~-----~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~- 67 (131)
++++++.++++...+ .|.+++... ... ..+... .....++++| ++.++++-..++.++.+|+.
T Consensus 200 ~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~ 278 (496)
T 3kya_A 200 YADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVD 278 (496)
T ss_dssp TBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHH
T ss_pred cCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEeccc
Confidence 488888666665543 255554332 221 122222 2345778899 56666667678889999987
Q ss_pred ------Ccce-----------eeee-ec-CCCCeEEEEEcCCCc-EEEE-eCCCcEEEEeC
Q psy3840 68 ------SGQC-----------EQQF-SF-HSAPALDVDWQSNTS-FASC-STDQHIHVCKL 107 (131)
Q Consensus 68 ------~~~~-----------~~~~-~~-~~~~v~~~~~~~~~~-~~~~-~~d~~i~i~d~ 107 (131)
++.. ...+ .. .......++++|++. +..+ ...+.|+.++.
T Consensus 279 ~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 279 YFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp HHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 4443 1121 11 223467899999987 4444 45668888654
No 297
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.49 E-value=0.27 Score=31.67 Aligned_cols=93 Identities=11% Similarity=0.091 Sum_probs=51.7
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCC-ceeec---ccccccEEEEEEcCC----CCEEEEEeC---C----CcEEEEECC
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGS-LKSTL---GQHKGPIFALKWNKR----GNYILSAGV---D----KTTIIWDAA 67 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~-~~~~~---~~~~~~i~~~~~~~~----~~~~~s~~~---d----~~i~~~d~~ 67 (131)
++.|+++++++ ..++.|.+++..++ .+..+ .........++++|+ +.++++-.. + ..|..++..
T Consensus 35 a~~pdG~l~V~-e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~ 113 (354)
T 3a9g_A 35 APLGGGRYLVT-ERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLD 113 (354)
T ss_dssp EEEETTEEEEE-ETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEEC
T ss_pred EEcCCCeEEEE-eCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEEC
Confidence 36778875444 56799998885554 11111 112345789999997 444444332 3 556667765
Q ss_pred Cc-------cee-eeeec-CCCCeEEEEEcCCCcEEEE
Q psy3840 68 SG-------QCE-QQFSF-HSAPALDVDWQSNTSFASC 96 (131)
Q Consensus 68 ~~-------~~~-~~~~~-~~~~v~~~~~~~~~~~~~~ 96 (131)
.. +.+ ..+.. .......+.|.|++.|..+
T Consensus 114 ~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt 151 (354)
T 3a9g_A 114 GSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT 151 (354)
T ss_dssp SSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred CCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence 43 111 11221 1123467999999885443
No 298
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.42 E-value=0.48 Score=34.11 Aligned_cols=99 Identities=8% Similarity=-0.092 Sum_probs=57.4
Q ss_pred EEEeCCCeEEEEcCCCC-----ceeecccccccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEE
Q psy3840 12 ATGSYDGYARIWTSDGS-----LKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV 85 (131)
Q Consensus 12 ~~~~~d~~i~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~-~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~ 85 (131)
++-...+.|+.+++.+. ....+.........|++++.+. ++++-...+.|.+.++........+.........|
T Consensus 440 ~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gI 519 (791)
T 3m0c_C 440 WSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAI 519 (791)
T ss_dssp EEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEE
T ss_pred EeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceE
Confidence 33334556776666542 1222222234456789988665 44455557889999987554333333334567899
Q ss_pred EEcCC-CcEEEEeC--CCcEEEEeCCCC
Q psy3840 86 DWQSN-TSFASCST--DQHIHVCKLHSD 110 (131)
Q Consensus 86 ~~~~~-~~~~~~~~--d~~i~i~d~~~~ 110 (131)
+++|. +.|+.... .+.|...++...
T Consensus 520 aVDp~~g~LYwtD~g~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 520 VVDPVHGFMYWTDWGTPAKIKKGGLNGV 547 (791)
T ss_dssp EEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred EEecCCCCEEEecCCCCCeEEEEecCCC
Confidence 99986 55544443 267888887643
No 299
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.21 E-value=0.49 Score=33.04 Aligned_cols=112 Identities=9% Similarity=-0.044 Sum_probs=67.8
Q ss_pred cCCCCEEEEEe--CCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCcceeeeeecCCCC
Q psy3840 5 RNNGSFLATGS--YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCEQQFSFHSAP 81 (131)
Q Consensus 5 ~~~~~~l~~~~--~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~-~d~~i~~~d~~~~~~~~~~~~~~~~ 81 (131)
.|....|+... ..+.|...++.|.....+...-.....+++++++..++.+. ..+.|...|+..... ..+......
T Consensus 131 dp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~ 209 (628)
T 4a0p_A 131 DPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPH 209 (628)
T ss_dssp ETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSC
T ss_pred ccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCC
Confidence 44334444433 24566667776655444433345668899999766666555 467899999865433 333333345
Q ss_pred eEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840 82 ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 82 v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 117 (131)
...+++..+..+.+-...+.|...|..+++....+.
T Consensus 210 P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~ 245 (628)
T 4a0p_A 210 PFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQ 245 (628)
T ss_dssp EEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred ceEEEEECCEEEEecCCCCEEEEEECCCCCceEEEe
Confidence 567777654334555557789999987776554443
No 300
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.12 E-value=0.17 Score=35.25 Aligned_cols=92 Identities=11% Similarity=0.029 Sum_probs=51.4
Q ss_pred CCCEEEEEeCCC-----------eEEEEcCCCCceeecc--c-cccc-EEEEEEcCCCCEEEEEeCC-----------Cc
Q psy3840 7 NGSFLATGSYDG-----------YARIWTSDGSLKSTLG--Q-HKGP-IFALKWNKRGNYILSAGVD-----------KT 60 (131)
Q Consensus 7 ~~~~l~~~~~d~-----------~i~~~~~~~~~~~~~~--~-~~~~-i~~~~~~~~~~~~~s~~~d-----------~~ 60 (131)
++++++.|+.++ .+.+||.......... . .... -.++...|+++.++.|+.+ ..
T Consensus 410 ~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~ 489 (656)
T 1k3i_A 410 KGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFT 489 (656)
T ss_dssp TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCC
T ss_pred CCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccc
Confidence 567777777532 5777887633332221 1 1111 2344567899999998754 46
Q ss_pred EEEEECCCcce--eeeeecCCCCeEEEEEcCCCc-EEEEeC
Q psy3840 61 TIIWDAASGQC--EQQFSFHSAPALDVDWQSNTS-FASCST 98 (131)
Q Consensus 61 i~~~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~~~~~~ 98 (131)
+.+||..+.+- +..+...+.........|+++ ++.|+.
T Consensus 490 v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 490 PEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred eEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 88999876532 222222222223344568888 566663
No 301
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.12 E-value=0.36 Score=31.01 Aligned_cols=94 Identities=10% Similarity=0.017 Sum_probs=50.4
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCCCCce---eec----ccccccEEEEEEcCC----CCEEEEEeC-------CCcEEEE
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSDGSLK---STL----GQHKGPIFALKWNKR----GNYILSAGV-------DKTTIIW 64 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~---~~~----~~~~~~i~~~~~~~~----~~~~~s~~~-------d~~i~~~ 64 (131)
++.|+++.++++...|.|++++..++.. ..+ ....+....++++|+ +..+++-.. ...|.-+
T Consensus 24 ~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~ 103 (353)
T 2g8s_A 24 AFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYG 103 (353)
T ss_dssp EECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEE
T ss_pred EEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEE
Confidence 4678888344555689999988654321 111 112345688999995 444444322 2245556
Q ss_pred ECCCc--c--eee----eeec---CCCCeEEEEEcCCCcEEEE
Q psy3840 65 DAASG--Q--CEQ----QFSF---HSAPALDVDWQSNTSFASC 96 (131)
Q Consensus 65 d~~~~--~--~~~----~~~~---~~~~v~~~~~~~~~~~~~~ 96 (131)
++... . ... .+.. .......+.|.|++.|..+
T Consensus 104 ~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~ 146 (353)
T 2g8s_A 104 RLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIA 146 (353)
T ss_dssp EECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEE
T ss_pred EECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEE
Confidence 65432 1 111 1111 1122457999999985433
No 302
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=94.97 E-value=0.64 Score=33.05 Aligned_cols=100 Identities=10% Similarity=0.013 Sum_probs=63.2
Q ss_pred CEEEEEeCCCeEEEEcCCCCceeec----ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee---cCCCC
Q psy3840 9 SFLATGSYDGYARIWTSDGSLKSTL----GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS---FHSAP 81 (131)
Q Consensus 9 ~~l~~~~~d~~i~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~---~~~~~ 81 (131)
..|..|+.++-|..|+........+ ......|.++...+++.+.+ |..++-+..+|..+++.. .+. .....
T Consensus 374 g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~ 451 (781)
T 3v9f_A 374 GKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ-IIELEKNELLD 451 (781)
T ss_dssp SCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE-ECCSTTTCCCC
T ss_pred CCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE-EeccCCCCCCe
Confidence 3455666555577777653222221 11235688998888888766 455556888888766432 222 12357
Q ss_pred eEEEEEcCCCcEEEEeCCCcEEEEeCCCCe
Q psy3840 82 ALDVDWQSNTSFASCSTDQHIHVCKLHSDK 111 (131)
Q Consensus 82 v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 111 (131)
|.++...+++.+-.++. +.+..+|..+++
T Consensus 452 v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~ 480 (781)
T 3v9f_A 452 VRVFYEDKNKKIWIGTH-AGVFVIDLASKK 480 (781)
T ss_dssp EEEEEECTTSEEEEEET-TEEEEEESSSSS
T ss_pred EEEEEECCCCCEEEEEC-CceEEEeCCCCe
Confidence 88888888888666666 568889887654
No 303
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=94.95 E-value=0.42 Score=30.93 Aligned_cols=106 Identities=9% Similarity=0.055 Sum_probs=64.9
Q ss_pred CeEEEEcCCCCceeecccccccEEEEEEcC--CCC-EEEEEeC---CCcEEEEECCCc---ce------eeeeec---CC
Q psy3840 18 GYARIWTSDGSLKSTLGQHKGPIFALKWNK--RGN-YILSAGV---DKTTIIWDAASG---QC------EQQFSF---HS 79 (131)
Q Consensus 18 ~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~-~~~s~~~---d~~i~~~d~~~~---~~------~~~~~~---~~ 79 (131)
|.+.+|..+.+.-..+.+|-.....+...- ... .++-+.+ .+.+++.++... .. +..+.. ..
T Consensus 180 G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~ 259 (365)
T 2xzh_A 180 GAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN 259 (365)
T ss_dssp EEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTT
T ss_pred eeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccC
Confidence 578899998888788888877655544432 122 3333322 257888887432 11 111111 12
Q ss_pred CCeEEEEEcCC-CcEEEEeCCCcEEEEeCCCCeeeEEEecccceE
Q psy3840 80 APALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVY 123 (131)
Q Consensus 80 ~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 123 (131)
+-.-++..++. +.+..-+.-|.+++||+.++.++..-+.-...+
T Consensus 260 DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~i 304 (365)
T 2xzh_A 260 DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETI 304 (365)
T ss_dssp CCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred CceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCce
Confidence 33456667665 557777889999999999999887655444333
No 304
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=94.79 E-value=0.67 Score=32.39 Aligned_cols=107 Identities=4% Similarity=-0.173 Sum_probs=62.8
Q ss_pred ccCCCCEEEE-EeCCCeEEEEcCCCCceeeccc-ccccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCcceeeeeecCCC
Q psy3840 4 SRNNGSFLAT-GSYDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFSFHSA 80 (131)
Q Consensus 4 ~~~~~~~l~~-~~~d~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~ 80 (131)
|++....|+. -..++.|..+++.+.....+.. .......+++++.+. ++.+-...+.|.+.++............-.
T Consensus 44 ~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~ 123 (628)
T 4a0p_A 44 FDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLD 123 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCC
T ss_pred EECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCC
Confidence 4454444444 3446778877777544333222 223456888887555 445545578899999865433222223345
Q ss_pred CeEEEEEcCC-CcEEEEeC--CCcEEEEeCCCC
Q psy3840 81 PALDVDWQSN-TSFASCST--DQHIHVCKLHSD 110 (131)
Q Consensus 81 ~v~~~~~~~~-~~~~~~~~--d~~i~i~d~~~~ 110 (131)
....++++|. +.+..... .+.|...++...
T Consensus 124 ~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~ 156 (628)
T 4a0p_A 124 SPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS 156 (628)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC
Confidence 6789999985 66544442 457777777643
No 305
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=94.55 E-value=0.77 Score=32.02 Aligned_cols=106 Identities=13% Similarity=-0.015 Sum_probs=62.8
Q ss_pred cCCCCEE-EEEeCCCeEEEEcCCCCceeecc-cccccEEEEEEcCCCCEEEEEeC--CCcEEEEECCCcceeeeeecCCC
Q psy3840 5 RNNGSFL-ATGSYDGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGNYILSAGV--DKTTIIWDAASGQCEQQFSFHSA 80 (131)
Q Consensus 5 ~~~~~~l-~~~~~d~~i~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~s~~~--d~~i~~~d~~~~~~~~~~~~~~~ 80 (131)
.+.++.| .+-...+.|.+.+..|.....+. ..-.....++++|....++.... .+.|...++............-.
T Consensus 92 D~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~ 171 (619)
T 3s94_A 92 DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIY 171 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS
T ss_pred EecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCC
Confidence 3434444 44445778999888876554443 33344678899996555554443 45666666654332222222334
Q ss_pred CeEEEEEcCC-CcEE-EEeCCCcEEEEeCCCC
Q psy3840 81 PALDVDWQSN-TSFA-SCSTDQHIHVCKLHSD 110 (131)
Q Consensus 81 ~v~~~~~~~~-~~~~-~~~~d~~i~i~d~~~~ 110 (131)
....++++++ ++|. +-...+.|..+|+...
T Consensus 172 ~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 172 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT 203 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred CCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence 5788999986 5554 4445567888888643
No 306
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=94.39 E-value=0.55 Score=29.71 Aligned_cols=70 Identities=10% Similarity=0.157 Sum_probs=43.6
Q ss_pred cccccEEEEEEcCCCCEEEEEeCCCcEEEEEC--CCcceeeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEe
Q psy3840 35 QHKGPIFALKWNKRGNYILSAGVDKTTIIWDA--ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCK 106 (131)
Q Consensus 35 ~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d 106 (131)
.....+..+.+.+++..++.+...+..+..|- .+.+.+. ......+..+.+.+++.+...+.++.++..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~ 231 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSD 231 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEE
T ss_pred CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEec
Confidence 34457888999998888776654443444442 2222221 1234567888888888866666777776653
No 307
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=93.93 E-value=0.64 Score=28.72 Aligned_cols=101 Identities=10% Similarity=0.085 Sum_probs=51.1
Q ss_pred CCCEEEEEeCC-----CeEEEEcCCCCceeecccccc---cEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCcce--
Q psy3840 7 NGSFLATGSYD-----GYARIWTSDGSLKSTLGQHKG---PIFALKWNKRGNYILSAGVD-----KTTIIWDAASGQC-- 71 (131)
Q Consensus 7 ~~~~l~~~~~d-----~~i~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~s~~~d-----~~i~~~d~~~~~~-- 71 (131)
++.+++.|+.+ ..+..||+.......+..... ....+.+ ++..++.|+.+ ..+.+||+.+.+=
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence 45566666543 347778876433332221111 1112222 56667777653 4688899876532
Q ss_pred eeeeecCCCCeEEEEEcCCCc-EEEEeCC-----CcEEEEeCCCCe
Q psy3840 72 EQQFSFHSAPALDVDWQSNTS-FASCSTD-----QHIHVCKLHSDK 111 (131)
Q Consensus 72 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~d-----~~i~i~d~~~~~ 111 (131)
+..+.........+.. +++ ++.|+.+ ..+.+||+++.+
T Consensus 237 ~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 237 VTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 2222211111122222 455 5666654 357899998764
No 308
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=93.88 E-value=0.72 Score=29.17 Aligned_cols=99 Identities=9% Similarity=0.127 Sum_probs=54.7
Q ss_pred ccCCCCEEEEEeCCCeEEEEcCCCCceeec-ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec----C
Q psy3840 4 SRNNGSFLATGSYDGYARIWTSDGSLKSTL-GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF----H 78 (131)
Q Consensus 4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~----~ 78 (131)
+.+++.+++++...+..+-.|-.+.....+ ......+..+.+.+++..++. +.+|.++..+...++....+.. .
T Consensus 170 ~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~ 248 (327)
T 2xbg_A 170 RSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRN 248 (327)
T ss_dssp ECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSC
T ss_pred EcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccC
Confidence 345666666654433333444323322222 223456788889998876654 4567777664332433222221 1
Q ss_pred CCCeEEEEEcCCCcEEEEeCCCcEE
Q psy3840 79 SAPALDVDWQSNTSFASCSTDQHIH 103 (131)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~d~~i~ 103 (131)
...+..+.+.+++.++.++.++.+.
T Consensus 249 ~~~~~~v~~~~~~~~~~~g~~g~i~ 273 (327)
T 2xbg_A 249 SVGFLDLAYRTPNEVWLAGGAGALL 273 (327)
T ss_dssp CSCEEEEEESSSSCEEEEESTTCEE
T ss_pred CcceEEEEecCCCEEEEEeCCCeEE
Confidence 2357888898887766666677663
No 309
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=93.74 E-value=0.58 Score=28.94 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=34.4
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCcc--eeeeeecCCCCeEEEEEcCCCc-EEEEeCC-----CcEEEEeCCCCee
Q psy3840 48 RGNYILSAGVD-----KTTIIWDAASGQ--CEQQFSFHSAPALDVDWQSNTS-FASCSTD-----QHIHVCKLHSDKP 112 (131)
Q Consensus 48 ~~~~~~s~~~d-----~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d-----~~i~i~d~~~~~~ 112 (131)
++..++.|+.+ ..+..||+.+.+ .+..+....... .+... +++ ++.|+.+ ..+.+||+.+.+-
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA-GVCAV-NGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC-eEEEE-CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 56677777654 368889987653 222222111111 12222 455 5666654 3489999987643
No 310
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.51 E-value=1.3 Score=30.93 Aligned_cols=83 Identities=10% Similarity=0.083 Sum_probs=57.6
Q ss_pred cEEEEEEcCCCCEEEEEeC-CCcEEEEECCCcce-------------eeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEE
Q psy3840 39 PIFALKWNKRGNYILSAGV-DKTTIIWDAASGQC-------------EQQFSFHSAPALDVDWQSNTS-FASCSTDQHIH 103 (131)
Q Consensus 39 ~i~~~~~~~~~~~~~s~~~-d~~i~~~d~~~~~~-------------~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~ 103 (131)
....+..+|+|++++.++. +.++.++|.++-.. .... .-.......+|.++|. +.+.--|.+|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~-e~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP-ELGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC-BCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec-cCCCcccEEEECCCCceEeeeeecceEE
Confidence 3456788999999888776 88999999875211 1111 2234577889999987 56666899999
Q ss_pred EEeCCCC----------eeeEEEecccce
Q psy3840 104 VCKLHSD----------KPVKSFEGHTRV 122 (131)
Q Consensus 104 i~d~~~~----------~~~~~~~~~~~~ 122 (131)
-|++... ..+..+.-|.++
T Consensus 403 kWni~~a~~~~~g~~~~~v~~k~dv~Yqp 431 (638)
T 3sbq_A 403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQP 431 (638)
T ss_dssp EEEHHHHHHHHTTCCCCCEEEEEECSSCE
T ss_pred EEeccHHHHHhcCccCCeeeeccccccCC
Confidence 9998642 355556555544
No 311
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.13 E-value=1.2 Score=31.03 Aligned_cols=64 Identities=14% Similarity=0.255 Sum_probs=45.5
Q ss_pred ccCCCCEEEEEeC-CCeEEEEcCC-------CCc-------eeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy3840 4 SRNNGSFLATGSY-DGYARIWTSD-------GSL-------KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS 68 (131)
Q Consensus 4 ~~~~~~~l~~~~~-d~~i~~~~~~-------~~~-------~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~ 68 (131)
.+|||+++++++. +.++.++++. ++. ...... .-.....+|+++|..+.+---|..+.-|++..
T Consensus 330 vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 330 TSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp ECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred eCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 4799999988877 8899999875 221 112221 22346779999996566666799999999865
No 312
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=92.94 E-value=1.2 Score=28.92 Aligned_cols=74 Identities=5% Similarity=0.079 Sum_probs=52.6
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCC-CcEEEEeCCCcEEEEeCCCC
Q psy3840 37 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSD 110 (131)
Q Consensus 37 ~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~ 110 (131)
.+.-.++..++....+..-.+-|.+++||+.++.++...+-....+..-+...+ +-++.-...|.|.--.++..
T Consensus 259 ~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 259 NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred CCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 455678888988888999999999999999999998877766666654444333 22555566666655544433
No 313
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=92.74 E-value=1.3 Score=28.78 Aligned_cols=107 Identities=10% Similarity=0.091 Sum_probs=69.4
Q ss_pred EEEEEeCCCeEEEEcCC--------CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECC-----Ccceeeeee
Q psy3840 10 FLATGSYDGYARIWTSD--------GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA-----SGQCEQQFS 76 (131)
Q Consensus 10 ~l~~~~~d~~i~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~-----~~~~~~~~~ 76 (131)
++++...+|.+..|++. .+.++++.. .+.+..+..++....++.+..+.-|..++.+ +++.+..+.
T Consensus 145 yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~ 223 (355)
T 3amr_A 145 YAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD 223 (355)
T ss_dssp EEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS
T ss_pred EEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec
Confidence 57777788999988763 233444443 3567788889988889999888667667754 233444332
Q ss_pred c--CCCCeEEEEE--cCCC--cE-EEEeCCCcEEEEeCC-CCeeeEEEe
Q psy3840 77 F--HSAPALDVDW--QSNT--SF-ASCSTDQHIHVCKLH-SDKPVKSFE 117 (131)
Q Consensus 77 ~--~~~~v~~~~~--~~~~--~~-~~~~~d~~i~i~d~~-~~~~~~~~~ 117 (131)
. ....+..++. .+++ .+ +++-.+....+||.+ +.+.+..+.
T Consensus 224 ~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 224 GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 1 2235677776 4443 34 444456789999996 566677664
No 314
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=91.25 E-value=0.73 Score=33.87 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=29.9
Q ss_pred CeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840 81 PALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 81 ~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~ 117 (131)
.+.++...++.. +++-+.|+++++|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 356666666654 7889999999999999999988764
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=90.97 E-value=1.8 Score=26.73 Aligned_cols=102 Identities=18% Similarity=0.222 Sum_probs=49.7
Q ss_pred CCCEEEEEeCCC-----eEEEEcCCCCceeecccccccE--EEEEEcCCCCEEEEEeCC-------CcEEEEECCCcc--
Q psy3840 7 NGSFLATGSYDG-----YARIWTSDGSLKSTLGQHKGPI--FALKWNKRGNYILSAGVD-------KTTIIWDAASGQ-- 70 (131)
Q Consensus 7 ~~~~l~~~~~d~-----~i~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~s~~~d-------~~i~~~d~~~~~-- 70 (131)
++.+++.|+.++ .+..||........+.....+. .++.. -++..++.|+.+ ..+..||+.+.+
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 456666666543 4667787643333222111111 11111 256666666542 357788987653
Q ss_pred eeeeeecCCCCeEEEEEcCCCc-EEEEeCC-----CcEEEEeCCCCe
Q psy3840 71 CEQQFSFHSAPALDVDWQSNTS-FASCSTD-----QHIHVCKLHSDK 111 (131)
Q Consensus 71 ~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d-----~~i~i~d~~~~~ 111 (131)
.+..+....... ++... +++ ++.|+.+ ..+.+||+++.+
T Consensus 187 ~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 187 YIAEMSTRRSGA-GVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp EECCCSSCCBSC-EEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred ECCCCccccccc-cEEEE-CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 222222211111 22222 445 5666653 468899988764
No 316
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=90.92 E-value=0.66 Score=34.10 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=31.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeee
Q psy3840 39 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 75 (131)
Q Consensus 39 ~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~ 75 (131)
.+.++...++..++++-+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4567777788889999999999999999999877654
No 317
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=90.81 E-value=2.7 Score=28.51 Aligned_cols=73 Identities=7% Similarity=0.076 Sum_probs=52.4
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCC-cEEEEeCCCcEEEEeCCC
Q psy3840 37 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHS 109 (131)
Q Consensus 37 ~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~i~d~~~ 109 (131)
.+.-.++..++....+..-.+-|.+++||+.++.++...+-....+..-+...+. -++.-...|.|.--.++.
T Consensus 258 ~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 258 NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred cCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 3455678888888889999999999999999999987777666666554444442 265556666665554443
No 318
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=90.71 E-value=1.9 Score=26.64 Aligned_cols=101 Identities=8% Similarity=-0.014 Sum_probs=50.0
Q ss_pred CCCEEEEEeCC----CeEEEEcCCCCceeeccccc---ccEEEEEEcCCCCEEEEEeCC------CcEEEEECCCcc--e
Q psy3840 7 NGSFLATGSYD----GYARIWTSDGSLKSTLGQHK---GPIFALKWNKRGNYILSAGVD------KTTIIWDAASGQ--C 71 (131)
Q Consensus 7 ~~~~l~~~~~d----~~i~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~s~~~d------~~i~~~d~~~~~--~ 71 (131)
++.+++.|+.+ ..+..||........+.... .....+.+ ++..++.|+.+ ..+..||+.+.+ .
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 45566666644 45777887643332222111 11112222 56667777654 458888987653 2
Q ss_pred eeeeecCCCCeEEEEEcCCCc-EEEEeC---------CCcEEEEeCCCCe
Q psy3840 72 EQQFSFHSAPALDVDWQSNTS-FASCST---------DQHIHVCKLHSDK 111 (131)
Q Consensus 72 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~---------d~~i~i~d~~~~~ 111 (131)
+..+........ +... +++ ++.|+. ...+.+||+.+.+
T Consensus 133 ~~~~p~~r~~~~-~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~ 180 (306)
T 3ii7_A 133 KPSMLTQRCSHG-MVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATET 180 (306)
T ss_dssp ECCCSSCCBSCE-EEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred CCCCcCCcceeE-EEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence 222221111112 2222 455 455543 3458899988764
No 319
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=90.71 E-value=2 Score=26.78 Aligned_cols=103 Identities=13% Similarity=0.104 Sum_probs=50.3
Q ss_pred CCCEEEEEeC-C-----CeEEEEcCCCCceeeccccccc--EEEEEEcCCCCEEEEEeCCC-----cEEEEECCCcc--e
Q psy3840 7 NGSFLATGSY-D-----GYARIWTSDGSLKSTLGQHKGP--IFALKWNKRGNYILSAGVDK-----TTIIWDAASGQ--C 71 (131)
Q Consensus 7 ~~~~l~~~~~-d-----~~i~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~s~~~d~-----~i~~~d~~~~~--~ 71 (131)
++.+++.|+. + ..+..||........+.....+ -.++. .-+++.++.|+.++ .+..||+.+.+ .
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 226 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP 226 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence 4556666665 2 3577788764333322221111 01111 12567777776644 47788887653 2
Q ss_pred eeeeecCCCCeEEEEEcCCCc-EEEEeCC--------------CcEEEEeCCCCee
Q psy3840 72 EQQFSFHSAPALDVDWQSNTS-FASCSTD--------------QHIHVCKLHSDKP 112 (131)
Q Consensus 72 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~d--------------~~i~i~d~~~~~~ 112 (131)
+..+.........+ .. +++ ++.|+.+ ..+.+||+++.+-
T Consensus 227 ~~~~p~~r~~~~~~-~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 280 (315)
T 4asc_A 227 FEAFPQERSSLSLV-SL-VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW 280 (315)
T ss_dssp ECCCSSCCBSCEEE-EE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred CCCCCCcccceeEE-EE-CCEEEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence 22222111112222 22 445 5666543 2477899887753
No 320
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=90.69 E-value=2.2 Score=27.39 Aligned_cols=71 Identities=11% Similarity=0.158 Sum_probs=44.1
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc-eeeeee---cCCCCeEEEEEcCC----CcEEEEeC----C----Cc
Q psy3840 38 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ-CEQQFS---FHSAPALDVDWQSN----TSFASCST----D----QH 101 (131)
Q Consensus 38 ~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~-~~~~~~---~~~~~v~~~~~~~~----~~~~~~~~----d----~~ 101 (131)
.....|+|.|++++++ +..++.|++++ ..++ .+..+. ........++++|+ +.+..+.. + ..
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 3568899999998544 45669999887 3444 222211 12345789999997 55443322 2 56
Q ss_pred EEEEeCCCC
Q psy3840 102 IHVCKLHSD 110 (131)
Q Consensus 102 i~i~d~~~~ 110 (131)
|..|+....
T Consensus 107 v~r~~~~~~ 115 (354)
T 3a9g_A 107 VIRGRLDGS 115 (354)
T ss_dssp EEEEEECSS
T ss_pred EEEEEECCC
Confidence 777776543
No 321
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=90.16 E-value=5.7 Score=31.22 Aligned_cols=99 Identities=10% Similarity=0.085 Sum_probs=58.7
Q ss_pred CCeEEEEcCCCCceeecccccccEEEEEEc--CCCC-EEEEEeC---CCcEEEEECCCc---cee------eeeec---C
Q psy3840 17 DGYARIWTSDGSLKSTLGQHKGPIFALKWN--KRGN-YILSAGV---DKTTIIWDAASG---QCE------QQFSF---H 78 (131)
Q Consensus 17 d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~-~~~s~~~---d~~i~~~d~~~~---~~~------~~~~~---~ 78 (131)
.|.+.+|+...+....+.||-+....+... +... .++-+.. .+.+++.++... ... ..+.. .
T Consensus 178 ~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~ 257 (1630)
T 1xi4_A 178 VGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ 257 (1630)
T ss_pred cceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccc
Confidence 477889998877767777877665555443 2222 3332222 367888887432 110 01110 1
Q ss_pred CCCeEEEEEcCC-CcEEEEeCCCcEEEEeCCCCeeeEE
Q psy3840 79 SAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKS 115 (131)
Q Consensus 79 ~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~ 115 (131)
.+-..++..++. |.+..-+.-|.+++||+.++.++..
T Consensus 258 ~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 258 NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred cCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence 122345666665 5566778889999999999877654
No 322
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=89.93 E-value=2.8 Score=27.22 Aligned_cols=90 Identities=7% Similarity=0.010 Sum_probs=53.5
Q ss_pred CCeEEEEcCC--CCcee---ecccc-cccEEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCcceee
Q psy3840 17 DGYARIWTSD--GSLKS---TLGQH-KGPIFALKWNKRGNYILSAGV-----------------DKTTIIWDAASGQCEQ 73 (131)
Q Consensus 17 d~~i~~~~~~--~~~~~---~~~~~-~~~i~~~~~~~~~~~~~s~~~-----------------d~~i~~~d~~~~~~~~ 73 (131)
+..|.+|++. +.... .+.+. -.....+.+.++|..+++... .+.+..+|. ++. .
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~ 214 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-R 214 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-E
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-E
Confidence 3467777654 33222 22221 134678889999988777641 234444554 332 2
Q ss_pred eeecCCCCeEEEEEcCCCc-E-EEEeCCCcEEEEeCCC
Q psy3840 74 QFSFHSAPALDVDWQSNTS-F-ASCSTDQHIHVCKLHS 109 (131)
Q Consensus 74 ~~~~~~~~v~~~~~~~~~~-~-~~~~~d~~i~i~d~~~ 109 (131)
.+...-...+.++|+|+++ + ++-+..+.|+.|++..
T Consensus 215 ~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 215 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 2222234678999999986 4 5555678899999863
No 323
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=89.02 E-value=2.8 Score=26.03 Aligned_cols=101 Identities=9% Similarity=0.054 Sum_probs=49.3
Q ss_pred CCCEEEEEeCC-----CeEEEEcCCCCceeeccccc---ccEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCcc--e
Q psy3840 7 NGSFLATGSYD-----GYARIWTSDGSLKSTLGQHK---GPIFALKWNKRGNYILSAGVD-----KTTIIWDAASGQ--C 71 (131)
Q Consensus 7 ~~~~l~~~~~d-----~~i~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~s~~~d-----~~i~~~d~~~~~--~ 71 (131)
++.+++.|+.+ ..+..||........+.... .....+.+ ++..++.|+.+ ..+..||+.+.+ .
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 198 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM 198 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence 45555665533 24677777633332222111 11112222 56666666654 457888887653 1
Q ss_pred eeeeecCCCCeEEEEEcCCCc-EEEEeCC-----CcEEEEeCCCCe
Q psy3840 72 EQQFSFHSAPALDVDWQSNTS-FASCSTD-----QHIHVCKLHSDK 111 (131)
Q Consensus 72 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~d-----~~i~i~d~~~~~ 111 (131)
+..+........ +... +++ ++.|+.+ ..+.+||+.+.+
T Consensus 199 ~~~~p~~r~~~~-~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 199 ITAMNTIRSGAG-VCVL-HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp CCCCSSCCBSCE-EEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCCCCccccce-EEEE-CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 222221111122 2222 455 5666554 468999988764
No 324
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=88.73 E-value=4.1 Score=27.65 Aligned_cols=106 Identities=9% Similarity=0.061 Sum_probs=66.9
Q ss_pred CCeEEEEcCCCCceeecccccccEEEEEEcCCC---CEEEEEeC---CCcEEEEECCCc---ce-----eee-ee---cC
Q psy3840 17 DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRG---NYILSAGV---DKTTIIWDAASG---QC-----EQQ-FS---FH 78 (131)
Q Consensus 17 d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~s~~~---d~~i~~~d~~~~---~~-----~~~-~~---~~ 78 (131)
.|.+.+|..+.+.-..+.+|-+....+...-+. ..++-+.. .+.+++.++... .. ... +. ..
T Consensus 178 ~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~ 257 (494)
T 1bpo_A 178 VGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ 257 (494)
T ss_dssp EEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTST
T ss_pred cceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccc
Confidence 367889999888888888887766665544322 23343433 278888888432 11 111 11 11
Q ss_pred CCCeEEEEEcCC-CcEEEEeCCCcEEEEeCCCCeeeEEEecccce
Q psy3840 79 SAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTRV 122 (131)
Q Consensus 79 ~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 122 (131)
.+-.-++..++. +.+..-+.-|.+++||+.++.++..-+.-...
T Consensus 258 ~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~ 302 (494)
T 1bpo_A 258 NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET 302 (494)
T ss_dssp TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred cCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCc
Confidence 233456777776 55777788999999999999988765543333
No 325
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.64 E-value=0.69 Score=34.64 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=28.2
Q ss_pred eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840 82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~ 117 (131)
+.+++..++.. +++-+.|++++||++.+++++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34445555555 7789999999999999999988864
No 326
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=88.56 E-value=2.9 Score=25.70 Aligned_cols=101 Identities=15% Similarity=0.190 Sum_probs=49.6
Q ss_pred CCCEEEEEeCC-----CeEEEEcCCCCceeecccccc---cEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCcce--
Q psy3840 7 NGSFLATGSYD-----GYARIWTSDGSLKSTLGQHKG---PIFALKWNKRGNYILSAGVD-----KTTIIWDAASGQC-- 71 (131)
Q Consensus 7 ~~~~l~~~~~d-----~~i~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~s~~~d-----~~i~~~d~~~~~~-- 71 (131)
++.+++.|+.+ ..+.+||........+..... ....+. .++..++.|+.+ ..+..||+.+.+=
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 45556666543 247778876433322221111 111122 256666776654 4578889876532
Q ss_pred eeeeecCCCCeEEEEEcCCCc-EEEEeCC-----CcEEEEeCCCCe
Q psy3840 72 EQQFSFHSAPALDVDWQSNTS-FASCSTD-----QHIHVCKLHSDK 111 (131)
Q Consensus 72 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~d-----~~i~i~d~~~~~ 111 (131)
+..+........ +... +++ ++.|+.+ ..+.+||+++.+
T Consensus 190 ~~~~p~~r~~~~-~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 190 VTPMATKRSGAG-VALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp ECCCSSCCBSCE-EEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCCCcccccce-EEEE-CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 222221111112 2222 445 5666653 468999998764
No 327
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=88.49 E-value=4.1 Score=27.28 Aligned_cols=91 Identities=9% Similarity=0.058 Sum_probs=48.9
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCce--eeccc------ccccEEEEEEcCC---CCEE-EEEeC------------
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSLK--STLGQ------HKGPIFALKWNKR---GNYI-LSAGV------------ 57 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~--~~~~~------~~~~i~~~~~~~~---~~~~-~s~~~------------ 57 (131)
+|.|+|+++++-...+.|..++.. +... ..+.. ..+....|+|+|+ +..+ ++-+.
T Consensus 33 a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~ 112 (454)
T 1cru_A 33 LWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPN 112 (454)
T ss_dssp EECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCE
T ss_pred EEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcccccc
Confidence 467888877765444578888754 3321 11211 2456779999995 4444 43322
Q ss_pred CCcEEEEECCCc-------ceee-eeec-CCCCeEEEEEcCCCcE
Q psy3840 58 DKTTIIWDAASG-------QCEQ-QFSF-HSAPALDVDWQSNTSF 93 (131)
Q Consensus 58 d~~i~~~d~~~~-------~~~~-~~~~-~~~~v~~~~~~~~~~~ 93 (131)
...|.-++.... +.+. .+.. .......+.|.|++.|
T Consensus 113 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~L 157 (454)
T 1cru_A 113 QTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKI 157 (454)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCE
T ss_pred ccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeE
Confidence 124444544321 1111 1221 1234788999999884
No 328
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=88.20 E-value=1.9 Score=30.88 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=25.7
Q ss_pred CCCcEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840 89 SNTSFASCSTDQHIHVCKLHSDKPVKSFEG 118 (131)
Q Consensus 89 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 118 (131)
++..+++-+.|+++++|++++++++.+..-
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 355588999999999999999999888765
No 329
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=88.15 E-value=3.8 Score=26.56 Aligned_cols=69 Identities=9% Similarity=0.174 Sum_probs=42.1
Q ss_pred ccEEEEEEcCCCCEEEEEe-CCCcEEEEECCC-cce--eeeeecCCCCeEEEEEcC-CCcE-EEEeCC-CcEEEEeC
Q psy3840 38 GPIFALKWNKRGNYILSAG-VDKTTIIWDAAS-GQC--EQQFSFHSAPALDVDWQS-NTSF-ASCSTD-QHIHVCKL 107 (131)
Q Consensus 38 ~~i~~~~~~~~~~~~~s~~-~d~~i~~~d~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~~-~~~~~d-~~i~i~d~ 107 (131)
.....++|+|+++.++.+. ..+.|..|++.. ++. ...+. .....-.++..+ +|.+ +++..+ +.|..|+.
T Consensus 221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 221 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 4567899999998777665 478899999863 322 12232 234556788888 4774 434333 23433443
No 330
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=88.00 E-value=3.4 Score=25.72 Aligned_cols=102 Identities=6% Similarity=-0.010 Sum_probs=49.0
Q ss_pred CCCEEEEEeCC--------CeEEEEcCCCCceeecccccccE--EEEEEcCCCCEEEEEeC-C-----CcEEEEECCCcc
Q psy3840 7 NGSFLATGSYD--------GYARIWTSDGSLKSTLGQHKGPI--FALKWNKRGNYILSAGV-D-----KTTIIWDAASGQ 70 (131)
Q Consensus 7 ~~~~l~~~~~d--------~~i~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~s~~~-d-----~~i~~~d~~~~~ 70 (131)
++.+++.|+.+ ..+..||........+.....+. .++. ..+++.++.|+. + ..+..||+.+.+
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL-SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE-EECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 34555666532 34777887643332222111110 1111 135666666665 2 458888987653
Q ss_pred --eeeeeecCCCCeEEEEEcCCCc-EEEEeCCC-----cEEEEeCCCCe
Q psy3840 71 --CEQQFSFHSAPALDVDWQSNTS-FASCSTDQ-----HIHVCKLHSDK 111 (131)
Q Consensus 71 --~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~-----~i~i~d~~~~~ 111 (131)
.+..+.......... .. +++ ++.|+.++ .+.+||+.+.+
T Consensus 177 W~~~~~~p~~r~~~~~~-~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 177 WKELAPMQTARSLFGAT-VH-DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EEECCCCSSCCBSCEEE-EE-TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred EEECCCCCCchhceEEE-EE-CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 222222211111222 22 445 56666543 47889987763
No 331
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=87.58 E-value=4 Score=26.14 Aligned_cols=69 Identities=10% Similarity=0.113 Sum_probs=43.8
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcce--eeeee---cCCCCeEEEEEcCC----CcE-EEEeCC-----CcE
Q psy3840 38 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC--EQQFS---FHSAPALDVDWQSN----TSF-ASCSTD-----QHI 102 (131)
Q Consensus 38 ~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~--~~~~~---~~~~~v~~~~~~~~----~~~-~~~~~d-----~~i 102 (131)
.....++|.|+++++++ ..++.|+.++ .++. +..+. ........++++|+ +.+ ++.... +.|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 34579999999985554 5679999988 3332 22111 12346789999997 454 333322 567
Q ss_pred EEEeCCC
Q psy3840 103 HVCKLHS 109 (131)
Q Consensus 103 ~i~d~~~ 109 (131)
..++...
T Consensus 108 ~r~~~~~ 114 (352)
T 2ism_A 108 VRLRHLG 114 (352)
T ss_dssp EEEEECS
T ss_pred EEEEeCC
Confidence 7787764
No 332
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=87.52 E-value=4.1 Score=26.25 Aligned_cols=67 Identities=12% Similarity=0.077 Sum_probs=44.1
Q ss_pred CEEEEEeCCCcEEEEECCCcceeeeeecCC-CCeEEEEEc--C-CCcEE-EE-eCCCcEEEEeCCCCeeeEEE
Q psy3840 50 NYILSAGVDKTTIIWDAASGQCEQQFSFHS-APALDVDWQ--S-NTSFA-SC-STDQHIHVCKLHSDKPVKSF 116 (131)
Q Consensus 50 ~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~--~-~~~~~-~~-~~d~~i~i~d~~~~~~~~~~ 116 (131)
..++.++.||.+.-+|..+|+....+.... .++....-. + ++.++ .. ..||.++.++..+|.....+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~ 83 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL 83 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence 367888999999999999999888876541 222221110 1 23433 33 57999999998887554443
No 333
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=87.24 E-value=5.9 Score=27.71 Aligned_cols=105 Identities=4% Similarity=-0.125 Sum_probs=58.9
Q ss_pred ccCCCCEEEEEe-CCCeEEEEcCCCCc--eeecccccccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840 4 SRNNGSFLATGS-YDGYARIWTSDGSL--KSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFSFHS 79 (131)
Q Consensus 4 ~~~~~~~l~~~~-~d~~i~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~-~~~s~~~d~~i~~~d~~~~~~~~~~~~~~ 79 (131)
+++.++.|+... ..+.|..++..+.. ...+.........+++++.+. ++.+-...+.|.+.++............-
T Consensus 47 ~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l 126 (619)
T 3s94_A 47 FVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL 126 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred EEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCC
Confidence 344444454443 35667777776442 122222224678899999555 44455567889999987544322222333
Q ss_pred CCeEEEEEcCC-CcEEEEeC--CCcEEEEeCC
Q psy3840 80 APALDVDWQSN-TSFASCST--DQHIHVCKLH 108 (131)
Q Consensus 80 ~~v~~~~~~~~-~~~~~~~~--d~~i~i~d~~ 108 (131)
.....++++|. +.+..... .+.|...++.
T Consensus 127 ~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d 158 (619)
T 3s94_A 127 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMD 158 (619)
T ss_dssp SCCCCEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCCceEEEecCCCeEEEeccCCCCEEEEEECC
Confidence 45678999886 55544443 3566666665
No 334
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.56 E-value=0.74 Score=34.50 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=28.5
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeee
Q psy3840 41 FALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 75 (131)
Q Consensus 41 ~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~ 75 (131)
.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 241 vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 241 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp SCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred EEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 34455667889999999999999999999876653
No 335
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=86.31 E-value=4.5 Score=25.45 Aligned_cols=100 Identities=9% Similarity=0.055 Sum_probs=53.2
Q ss_pred ccCCCCEEEEEeCC--------------CeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEe--C--CCcEEEEE
Q psy3840 4 SRNNGSFLATGSYD--------------GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG--V--DKTTIIWD 65 (131)
Q Consensus 4 ~~~~~~~l~~~~~d--------------~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~--~--d~~i~~~d 65 (131)
++++++.|+-.... ..|+..++.+.....+.... ...+++++..++-.. . ...|+..+
T Consensus 60 i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~ 135 (302)
T 3s25_A 60 INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIR 135 (302)
T ss_dssp EEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEE
T ss_pred EEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEE
Confidence 56777777776543 34666666655443333221 225677788777655 3 34455556
Q ss_pred CCCcceeeeeecCCCCeEEEEEcCCCc-EE-EEeCCCcEEEEeCCCCee
Q psy3840 66 AASGQCEQQFSFHSAPALDVDWQSNTS-FA-SCSTDQHIHVCKLHSDKP 112 (131)
Q Consensus 66 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~d~~i~i~d~~~~~~ 112 (131)
+... ....+..+.. ..++++++ |. +......|+.-++..+..
T Consensus 136 ~dGs-~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~ 179 (302)
T 3s25_A 136 IDGE-EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSE 179 (302)
T ss_dssp TTSC-CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEE
T ss_pred CCCC-CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCE
Confidence 5533 3333433322 23445544 43 333356788878776543
No 336
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=85.58 E-value=2.6 Score=30.22 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=27.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee
Q psy3840 40 IFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS 76 (131)
Q Consensus 40 i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~ 76 (131)
|.++.+ +..++++-+.|.++|+|++.+++++....
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 454443 47899999999999999999998776654
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=85.57 E-value=4.8 Score=25.06 Aligned_cols=104 Identities=15% Similarity=0.218 Sum_probs=50.1
Q ss_pred CCCEEEEEeC------CCeEEEEcCCCCceeeccccccc--EEEEEEcCCCCEEEEEeCC-----CcEEEEECCCcc--e
Q psy3840 7 NGSFLATGSY------DGYARIWTSDGSLKSTLGQHKGP--IFALKWNKRGNYILSAGVD-----KTTIIWDAASGQ--C 71 (131)
Q Consensus 7 ~~~~l~~~~~------d~~i~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~s~~~d-----~~i~~~d~~~~~--~ 71 (131)
++.+++.|+. ...+..||........+.....+ -.++.. -++..++.|+.+ ..+.+||+.+.+ .
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 236 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEV 236 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEE
Confidence 4556666653 12477888764333322211111 011221 256677776643 246678887653 2
Q ss_pred eeeeecCCCCeEEEEEcCCCc-EEEEeCC--------------CcEEEEeCCCCeee
Q psy3840 72 EQQFSFHSAPALDVDWQSNTS-FASCSTD--------------QHIHVCKLHSDKPV 113 (131)
Q Consensus 72 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~d--------------~~i~i~d~~~~~~~ 113 (131)
+..+....... ++... +++ ++.|+.+ ..+.+||+++.+-.
T Consensus 237 ~~~~p~~r~~~-~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 291 (318)
T 2woz_A 237 MTEFPQERSSI-SLVSL-AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA 291 (318)
T ss_dssp CCCCSSCCBSC-EEEEE-TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred CCCCCCcccce-EEEEE-CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence 22222211111 22222 445 5666543 45889999887543
No 338
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=85.56 E-value=4.7 Score=24.98 Aligned_cols=102 Identities=10% Similarity=0.112 Sum_probs=50.9
Q ss_pred CCCEEEEEeCC-----CeEEEEcCCCCceeeccccc---ccEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCcc--e
Q psy3840 7 NGSFLATGSYD-----GYARIWTSDGSLKSTLGQHK---GPIFALKWNKRGNYILSAGVD-----KTTIIWDAASGQ--C 71 (131)
Q Consensus 7 ~~~~l~~~~~d-----~~i~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~s~~~d-----~~i~~~d~~~~~--~ 71 (131)
++.+++.|+.+ ..+..||+.......+.... .....+.+ ++..++.|+.+ ..+..||+.+.+ .
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 245 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF 245 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence 34555666543 34777887643333222111 11122222 56677777654 468889987653 2
Q ss_pred eeeeecCCCCeEEEEEcCCCc-EEEEeCC-----CcEEEEeCCCCee
Q psy3840 72 EQQFSFHSAPALDVDWQSNTS-FASCSTD-----QHIHVCKLHSDKP 112 (131)
Q Consensus 72 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~d-----~~i~i~d~~~~~~ 112 (131)
+..+....... ++... +++ ++.|+.+ ..+.+||+++.+-
T Consensus 246 ~~~~p~~r~~~-~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 246 VAPMKHRRSAL-GITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp CCCCSSCCBSC-EEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CCCCCCCccce-EEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 22222111111 22222 445 5666643 4588999987653
No 339
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=85.47 E-value=7.9 Score=27.49 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=42.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCC
Q psy3840 39 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSD 110 (131)
Q Consensus 39 ~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 110 (131)
.|.++...+++..+-.+.. +-+..+|..+++...........|.++...+++.+-.|+. +-+.+++..++
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~ 261 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTT 261 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEET-TEEEEECCTTS
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeC-CceeEEecCCC
Confidence 4788887776664333433 3477788776543211111223577887777888666664 45778887654
No 340
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=84.97 E-value=5 Score=24.75 Aligned_cols=100 Identities=5% Similarity=-0.056 Sum_probs=51.2
Q ss_pred CCEEEEEeCC--CeEEEEcCCCCceeeccccc---ccEEEEEEcCCCCEEEEEeCC----CcEEEEECCCcc--eeeeee
Q psy3840 8 GSFLATGSYD--GYARIWTSDGSLKSTLGQHK---GPIFALKWNKRGNYILSAGVD----KTTIIWDAASGQ--CEQQFS 76 (131)
Q Consensus 8 ~~~l~~~~~d--~~i~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~s~~~d----~~i~~~d~~~~~--~~~~~~ 76 (131)
+.+++.|+.+ ..+..||........+.... .....+. .++..++.|+.+ ..+..||+.+.+ .+..+.
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 3455666653 46888887644333332111 1111222 256666777654 567888987753 222222
Q ss_pred cCCCCeEEEEEcCCCc-EEEEeCC------CcEEEEeCCCCe
Q psy3840 77 FHSAPALDVDWQSNTS-FASCSTD------QHIHVCKLHSDK 111 (131)
Q Consensus 77 ~~~~~v~~~~~~~~~~-~~~~~~d------~~i~i~d~~~~~ 111 (131)
........... +++ ++.|+.+ ..+.+||+.+.+
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 21111122222 455 5666654 458899988764
No 341
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=84.87 E-value=5.2 Score=24.88 Aligned_cols=102 Identities=9% Similarity=0.079 Sum_probs=48.7
Q ss_pred CCCEEEEEeCC-------CeEEEEcCCCCceeecccccccE--EEEEEcCCCCEEEEEeC------CCcEEEEECCCcc-
Q psy3840 7 NGSFLATGSYD-------GYARIWTSDGSLKSTLGQHKGPI--FALKWNKRGNYILSAGV------DKTTIIWDAASGQ- 70 (131)
Q Consensus 7 ~~~~l~~~~~d-------~~i~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~s~~~------d~~i~~~d~~~~~- 70 (131)
++.+++.|+.+ ..+.+||........+.....+. .++.. .++..++.|+. -..+..||+.+.+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 45566666653 24667777643333222211111 11111 35666666653 2358889987653
Q ss_pred -eeeeeecCCCCeEEEEEcCCCc-EEEEeCC-----CcEEEEeCCCCe
Q psy3840 71 -CEQQFSFHSAPALDVDWQSNTS-FASCSTD-----QHIHVCKLHSDK 111 (131)
Q Consensus 71 -~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d-----~~i~i~d~~~~~ 111 (131)
.+..+....... ++... +++ ++.|+.+ ..+.+||+.+.+
T Consensus 188 ~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 188 KDLAPMKTPRSMF-GVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEECCCSSCCBSC-EEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EECCCCCCCcccc-eEEEE-CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 222222111111 22222 445 5666543 347788887653
No 342
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=84.23 E-value=7.5 Score=26.19 Aligned_cols=91 Identities=12% Similarity=0.203 Sum_probs=50.3
Q ss_pred cccCCCC-EEEEEeCCCeEEEEcCCCCc----eeecc---------cccccEEEEEEcCC----CCEEEEEeC--C----
Q psy3840 3 SSRNNGS-FLATGSYDGYARIWTSDGSL----KSTLG---------QHKGPIFALKWNKR----GNYILSAGV--D---- 58 (131)
Q Consensus 3 ~~~~~~~-~l~~~~~d~~i~~~~~~~~~----~~~~~---------~~~~~i~~~~~~~~----~~~~~s~~~--d---- 58 (131)
+|.|++. +++++...|.|++++..+.. +..+. ...+....|+++|+ +..+++-+. +
T Consensus 20 a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~ 99 (463)
T 2wg3_C 20 LHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERWAI 99 (463)
T ss_dssp ECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCCSSCS
T ss_pred EECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCCCccc
Confidence 4678885 56666789999999765331 11111 11356788999996 444443322 1
Q ss_pred ------CcEEEEECCCc----------ceeeeee--cCCCCeEEEEEcCCCcE
Q psy3840 59 ------KTTIIWDAASG----------QCEQQFS--FHSAPALDVDWQSNTSF 93 (131)
Q Consensus 59 ------~~i~~~d~~~~----------~~~~~~~--~~~~~v~~~~~~~~~~~ 93 (131)
..|.-|.+..+ +.+..+. ........|.|.||+.|
T Consensus 100 ~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~L 152 (463)
T 2wg3_C 100 GPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFL 152 (463)
T ss_dssp SSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCE
T ss_pred CCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcE
Confidence 13333554321 1222222 12234678999999984
No 343
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=84.08 E-value=6.4 Score=25.24 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=33.3
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcce---eeee----ecCCCCeEEEEEcCC
Q psy3840 38 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC---EQQF----SFHSAPALDVDWQSN 90 (131)
Q Consensus 38 ~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~---~~~~----~~~~~~v~~~~~~~~ 90 (131)
...+.|+|.|+++.++.+...+.|++++.. +.. +..+ .........++++|+
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCC
Confidence 346899999999834455577999998853 322 1111 112235688999995
No 344
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=83.96 E-value=12 Score=28.44 Aligned_cols=98 Identities=8% Similarity=-0.067 Sum_probs=56.7
Q ss_pred CEEEEEeCCCeEEEEcCCCCceeec--ccccccEEEEEEcCC------CCEEEEEeC-CCcEEEEECCCcceeeeeec-C
Q psy3840 9 SFLATGSYDGYARIWTSDGSLKSTL--GQHKGPIFALKWNKR------GNYILSAGV-DKTTIIWDAASGQCEQQFSF-H 78 (131)
Q Consensus 9 ~~l~~~~~d~~i~~~~~~~~~~~~~--~~~~~~i~~~~~~~~------~~~~~s~~~-d~~i~~~d~~~~~~~~~~~~-~ 78 (131)
.+++.+. ++.+.++.+....+... ......|.|+++.|. +..++.|.+ |++++++.+...+.+....- .
T Consensus 524 ~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~ 602 (1158)
T 3ei3_A 524 SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG 602 (1158)
T ss_dssp SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS
T ss_pred CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC
Confidence 4555554 56666665542111111 123467999998763 368899987 99999999987655433221 1
Q ss_pred CCCeEEEEEcC-CCc--EEEEeCCCcEEEEeC
Q psy3840 79 SAPALDVDWQS-NTS--FASCSTDQHIHVCKL 107 (131)
Q Consensus 79 ~~~v~~~~~~~-~~~--~~~~~~d~~i~i~d~ 107 (131)
.....++.... ++. +..|-.||.+.-+.+
T Consensus 603 ~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~ 634 (1158)
T 3ei3_A 603 EIIPRSILMTTFESSHYLLCALGDGALFYFGL 634 (1158)
T ss_dssp SCCEEEEEEEEETTEEEEEEEETTSEEEEEEE
T ss_pred CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEE
Confidence 12344444321 222 677888887644433
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=82.70 E-value=8.6 Score=25.74 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=34.6
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee--eeeec------CCCCeEEEEEcCC
Q psy3840 38 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE--QQFSF------HSAPALDVDWQSN 90 (131)
Q Consensus 38 ~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~--~~~~~------~~~~v~~~~~~~~ 90 (131)
...+.|+|.|+++++++-...+.|+.++..+++.. ..+.. .......++++|+
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd 87 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence 35579999999997776544457888876555432 22221 1345678999994
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=79.76 E-value=9 Score=24.08 Aligned_cols=64 Identities=16% Similarity=0.106 Sum_probs=38.9
Q ss_pred ccCCCCEEEEEe--CCC--eEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeC-CCcEEEEECCCcce
Q psy3840 4 SRNNGSFLATGS--YDG--YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQC 71 (131)
Q Consensus 4 ~~~~~~~l~~~~--~d~--~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~-d~~i~~~d~~~~~~ 71 (131)
+++++++|+-.. .++ .|..-++.+.....+..+.. ..++|+++.++-.+. ...|...++..+..
T Consensus 111 ~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~ 179 (302)
T 3s25_A 111 ASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSE 179 (302)
T ss_dssp EEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEE
T ss_pred EEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCE
Confidence 567788887765 233 44444566655555544432 456777777775554 67788888766543
No 347
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=77.88 E-value=15 Score=25.71 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=37.6
Q ss_pred EEEEEEcCCCCEEEEEeCC------------CcEEEEECCCcceeeeeecC-CCCeEEEEEcCCCc-EEE
Q psy3840 40 IFALKWNKRGNYILSAGVD------------KTTIIWDAASGQCEQQFSFH-SAPALDVDWQSNTS-FAS 95 (131)
Q Consensus 40 i~~~~~~~~~~~~~s~~~d------------~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~~~ 95 (131)
.-.|.|+|.|.+++.-+.+ ..+.+.+..+++...-+... ..+++.++|+|+++ ++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfv 547 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFV 547 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEE
Confidence 4678999999988776543 23555566666654444443 35789999999976 433
No 348
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=77.06 E-value=17 Score=25.80 Aligned_cols=105 Identities=12% Similarity=0.140 Sum_probs=55.9
Q ss_pred CCCEEEEEeCCC--eEEEEcCCCCceeeccc------ccccEEEEEEcCC-CCEEEEEeC--C-----CcEEEEECCCcc
Q psy3840 7 NGSFLATGSYDG--YARIWTSDGSLKSTLGQ------HKGPIFALKWNKR-GNYILSAGV--D-----KTTIIWDAASGQ 70 (131)
Q Consensus 7 ~~~~l~~~~~d~--~i~~~~~~~~~~~~~~~------~~~~i~~~~~~~~-~~~~~s~~~--d-----~~i~~~d~~~~~ 70 (131)
++.+++.|+.++ .+.+||........+.. .......+.+..+ +..++.|+. + ..+..||+.+..
T Consensus 500 ~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 500 DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 677778877644 68888877443333221 1111123444554 667777765 2 357889988765
Q ss_pred e-----eeeee----cCCCCeEEEEEcCCCc-EEEEeC--------CCcEEEEeCCCCee
Q psy3840 71 C-----EQQFS----FHSAPALDVDWQSNTS-FASCST--------DQHIHVCKLHSDKP 112 (131)
Q Consensus 71 ~-----~~~~~----~~~~~v~~~~~~~~~~-~~~~~~--------d~~i~i~d~~~~~~ 112 (131)
- ...+. ...... ++....+++ ++.|+. ...+.+||+.+.+-
T Consensus 580 w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 580 ATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp SSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred cccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 1 11111 111111 222333255 566663 34689999987654
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=76.05 E-value=18 Score=25.65 Aligned_cols=104 Identities=6% Similarity=0.005 Sum_probs=52.7
Q ss_pred CCCEEEEEeCC----CeEEEEcCCCCceeecc-c-------ccccEEEEEEcC-CCCEEEEEeCC------CcEEEEECC
Q psy3840 7 NGSFLATGSYD----GYARIWTSDGSLKSTLG-Q-------HKGPIFALKWNK-RGNYILSAGVD------KTTIIWDAA 67 (131)
Q Consensus 7 ~~~~l~~~~~d----~~i~~~~~~~~~~~~~~-~-------~~~~i~~~~~~~-~~~~~~s~~~d------~~i~~~d~~ 67 (131)
++.+++.|+.+ ..+.+||........+. . ....-.++...+ ++..++.|+.+ ..+.+||+.
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 45666677643 34677776533332222 1 011112333333 67777777643 246788887
Q ss_pred Ccc--eeeeeecCCCCeEEEEEcCCCc-EEEEeCCC--cEEEEeCCCCe
Q psy3840 68 SGQ--CEQQFSFHSAPALDVDWQSNTS-FASCSTDQ--HIHVCKLHSDK 111 (131)
Q Consensus 68 ~~~--~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~--~i~i~d~~~~~ 111 (131)
+.+ .+..+...... .+.....+++ ++.|+.++ .+.+||+.+.+
T Consensus 477 t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~ 524 (695)
T 2zwa_A 477 TREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEI 524 (695)
T ss_dssp TTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTE
T ss_pred CCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCc
Confidence 642 22222221111 2233323555 66776544 68999988764
No 350
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=74.79 E-value=14 Score=23.84 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=46.0
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee--eee----ecCCCCeEEEEEcCC----CcE-EEE--eCCCcEE
Q psy3840 37 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE--QQF----SFHSAPALDVDWQSN----TSF-ASC--STDQHIH 103 (131)
Q Consensus 37 ~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~--~~~----~~~~~~v~~~~~~~~----~~~-~~~--~~d~~i~ 103 (131)
-...+.|+|.|++.++++--..|.|++++...++.. ..+ .........++++|+ +.+ ++- ..++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 345689999999997776655899999886655432 111 122346789999995 544 332 2344565
Q ss_pred EEeCCC
Q psy3840 104 VCKLHS 109 (131)
Q Consensus 104 i~d~~~ 109 (131)
-|.+..
T Consensus 111 R~~~~~ 116 (347)
T 3das_A 111 RMLYDE 116 (347)
T ss_dssp EEEBCT
T ss_pred EEEeCC
Confidence 555543
No 351
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=74.30 E-value=27 Score=26.72 Aligned_cols=97 Identities=15% Similarity=0.265 Sum_probs=56.3
Q ss_pred EEEEEeCCCeEEEEcCCCC-ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEE--CCCcceeeeeec--CCCCeEE
Q psy3840 10 FLATGSYDGYARIWTSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD--AASGQCEQQFSF--HSAPALD 84 (131)
Q Consensus 10 ~l~~~~~d~~i~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d--~~~~~~~~~~~~--~~~~v~~ 84 (131)
+|++|- ...|++|++..+ .+..-..+-..+..+.....+++++.|+.-..+.+.. ...++. ..+.. ....+++
T Consensus 897 ~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L-~~~a~D~~~~~vta 974 (1158)
T 3ei3_A 897 KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNF-EEIARDFNPNWMSA 974 (1158)
T ss_dssp EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEE-EEEEECCSCBCEEE
T ss_pred EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeE-EEEEeecccccEEE
Confidence 555554 468999998733 2221111111122222333578899998877777654 433333 22222 2345777
Q ss_pred EEEcCCCcEEEEeCCCcEEEEeCC
Q psy3840 85 VDWQSNTSFASCSTDQHIHVCKLH 108 (131)
Q Consensus 85 ~~~~~~~~~~~~~~d~~i~i~d~~ 108 (131)
+.+-.++.++.++.++.+.++...
T Consensus 975 ~~~ld~~t~l~aD~~gNl~vl~~~ 998 (1158)
T 3ei3_A 975 VEILDDDNFLGAENAFNLFVCQKD 998 (1158)
T ss_dssp EEEEETTEEEEEETTSEEEEEEEC
T ss_pred EEEEccCcEEEEcCCCcEEEEecC
Confidence 777666678888999999888654
No 352
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=73.05 E-value=16 Score=23.62 Aligned_cols=93 Identities=6% Similarity=0.022 Sum_probs=51.9
Q ss_pred cccCCCCEEEEEeCCCeEEEEcCC-CCc--eeec----ccccccEEEEEEcCC----CCEEEEEe--CCCcEEEEECCCc
Q psy3840 3 SSRNNGSFLATGSYDGYARIWTSD-GSL--KSTL----GQHKGPIFALKWNKR----GNYILSAG--VDKTTIIWDAASG 69 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~--~~~~----~~~~~~i~~~~~~~~----~~~~~s~~--~d~~i~~~d~~~~ 69 (131)
++.|+|.++++--..|.|++++.. ++. +..+ ....+....|+++|+ +..+++-+ .++.|.-|.+..+
T Consensus 38 a~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~ 117 (347)
T 3das_A 38 APLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEK 117 (347)
T ss_dssp EECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTT
T ss_pred EEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCC
Confidence 467899877776548999998765 332 1111 123456789999995 44444322 3445555555431
Q ss_pred ----------cee-eeeec-CCCCeEEEEEcCCCcE-EE
Q psy3840 70 ----------QCE-QQFSF-HSAPALDVDWQSNTSF-AS 95 (131)
Q Consensus 70 ----------~~~-~~~~~-~~~~v~~~~~~~~~~~-~~ 95 (131)
+.+ ..+.. .......+.|.|++.| ++
T Consensus 118 ~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt 156 (347)
T 3das_A 118 KPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAG 156 (347)
T ss_dssp SCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEE
T ss_pred CcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEE
Confidence 111 11221 1223457999999884 44
No 353
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=71.76 E-value=28 Score=27.72 Aligned_cols=71 Identities=6% Similarity=0.065 Sum_probs=45.9
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCC-CcEEEEeCCCcEEEEeCC
Q psy3840 38 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLH 108 (131)
Q Consensus 38 ~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~ 108 (131)
+...++..++....+....+-|.++++|+.++.++..-+-...+|...+..+. +-++.....|.|.--.+.
T Consensus 259 Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~ 330 (1630)
T 1xi4_A 259 DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (1630)
T ss_pred CcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEc
Confidence 44467788888888888899999999999999887665544444443333332 224444555555444443
No 354
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=69.12 E-value=27 Score=24.58 Aligned_cols=54 Identities=11% Similarity=0.174 Sum_probs=36.9
Q ss_pred cEEEEEEcCCCCEEEEEeC------------CCcEEEEECCCcceeeeeecC-CCCeEEEEEcCCCc
Q psy3840 39 PIFALKWNKRGNYILSAGV------------DKTTIIWDAASGQCEQQFSFH-SAPALDVDWQSNTS 92 (131)
Q Consensus 39 ~i~~~~~~~~~~~~~s~~~------------d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~ 92 (131)
..-.|.|+++|.+.+..+. ...+..++..+++....+... ..+++.++|+||++
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~k 543 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQK 543 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSS
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCC
Confidence 3467899999998885432 125666677677755444432 34689999999976
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=66.02 E-value=28 Score=23.52 Aligned_cols=53 Identities=8% Similarity=0.021 Sum_probs=34.5
Q ss_pred ccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCc---ceeeeeec---------CCCCeEEEEEcCC
Q psy3840 38 GPIFALKWNKRGN-YILSAGVDKTTIIWDAASG---QCEQQFSF---------HSAPALDVDWQSN 90 (131)
Q Consensus 38 ~~i~~~~~~~~~~-~~~s~~~d~~i~~~d~~~~---~~~~~~~~---------~~~~v~~~~~~~~ 90 (131)
..-+.|+|.|++. .++.+...|.|++++.... ..+..+.. .......|+++|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3457899999986 4566678899999975422 11222210 1346788999996
No 356
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=63.83 E-value=23 Score=21.90 Aligned_cols=49 Identities=14% Similarity=-0.026 Sum_probs=22.8
Q ss_pred CCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCC
Q psy3840 58 DKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLH 108 (131)
Q Consensus 58 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~ 108 (131)
+|.++.|-....-.+..-......+..++......++. .++.++.|-..
T Consensus 158 ~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al--~~G~v~~wG~n 206 (282)
T 3qhy_B 158 NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL--KDGKVIAWGDN 206 (282)
T ss_dssp TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE--ETTEEEEEECC
T ss_pred CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE--ECCeEEEEECC
Confidence 57777776543211110001123455555444433444 47777777543
No 357
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=59.07 E-value=40 Score=23.07 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=35.9
Q ss_pred CEEEEEeCCCeEEEEcC-C-CC-------ceeecc--cccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy3840 9 SFLATGSYDGYARIWTS-D-GS-------LKSTLG--QHKGPIFALKWNKRGNYILSAGVDKTTII 63 (131)
Q Consensus 9 ~~l~~~~~d~~i~~~~~-~-~~-------~~~~~~--~~~~~i~~~~~~~~~~~~~s~~~d~~i~~ 63 (131)
..+..|..+|.|+-.-+ . +. .+..+. ....+|..|.++++...++.++.++.+++
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 46777888998663322 1 11 122222 23568899999999999999988876664
No 358
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=58.05 E-value=31 Score=21.38 Aligned_cols=86 Identities=13% Similarity=0.103 Sum_probs=41.7
Q ss_pred CCeEEEEcCC--CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCcEE
Q psy3840 17 DGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFA 94 (131)
Q Consensus 17 d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 94 (131)
||.|..|-.. ++. ..-......|..++...... ++. . ||.++.|-....-.+..-..-...+..++...+..++
T Consensus 41 ~G~v~~wG~n~~Gql-g~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs~a 116 (282)
T 3qhy_B 41 GGKVLGWGANLNGQL-TMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYA 116 (282)
T ss_dssp TTEEEEEECCSSSTT-SCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEEEE
T ss_pred CCEEEEEeCCCCCCC-CCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEEEE
Confidence 8888888544 221 11111223566666543333 333 4 8888888765421111100112356556554443333
Q ss_pred EEeCCCcEEEEeCC
Q psy3840 95 SCSTDQHIHVCKLH 108 (131)
Q Consensus 95 ~~~~d~~i~i~d~~ 108 (131)
.. ++.++.|-..
T Consensus 117 l~--~G~v~~wG~n 128 (282)
T 3qhy_B 117 LK--DGKVIAWGDD 128 (282)
T ss_dssp EE--TTEEEEEECC
T ss_pred Ee--CCeEEEecCC
Confidence 33 7778887544
No 359
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=53.92 E-value=55 Score=23.07 Aligned_cols=54 Identities=6% Similarity=0.027 Sum_probs=30.6
Q ss_pred cccCCCCEEEEEeCC------------CeEEEEcCC-CCceeecccc-cccEEEEEEcCCCCEEEEEe
Q psy3840 3 SSRNNGSFLATGSYD------------GYARIWTSD-GSLKSTLGQH-KGPIFALKWNKRGNYILSAG 56 (131)
Q Consensus 3 ~~~~~~~~l~~~~~d------------~~i~~~~~~-~~~~~~~~~~-~~~i~~~~~~~~~~~~~s~~ 56 (131)
+|++.|++++.-..+ ..+.+.+.. ++....+... ...++.++|+|+++.++..-
T Consensus 482 ~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 482 GFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred EECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 366777755554322 123344443 4433333333 34788899999988777663
No 360
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=51.48 E-value=43 Score=21.07 Aligned_cols=48 Identities=8% Similarity=0.095 Sum_probs=23.2
Q ss_pred CcEEEEECCCcc--eeeeeecCCCCeEEEEEcCCCc-EEEEeC------CCcEEEEeC
Q psy3840 59 KTTIIWDAASGQ--CEQQFSFHSAPALDVDWQSNTS-FASCST------DQHIHVCKL 107 (131)
Q Consensus 59 ~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~-~~~~~~------d~~i~i~d~ 107 (131)
..+..||+.+.+ .+..+......-.++... +++ ++.|+. ...+..||+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEe
Confidence 468889987643 222222111111233333 444 555553 345777876
No 361
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=48.39 E-value=72 Score=22.91 Aligned_cols=55 Identities=9% Similarity=0.099 Sum_probs=36.3
Q ss_pred CEEEEEeCCCeEE-EEcCC-CC-------ceee--cccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy3840 9 SFLATGSYDGYAR-IWTSD-GS-------LKST--LGQHKGPIFALKWNKRGNYILSAGVDKTTII 63 (131)
Q Consensus 9 ~~l~~~~~d~~i~-~~~~~-~~-------~~~~--~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~ 63 (131)
..+..|..+|.|+ +.... +. .+.. +.....+|..|.++++...++.++.++.+++
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 4577888899865 33221 10 1221 2234568899999999999999988887665
No 362
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=44.82 E-value=13 Score=19.23 Aligned_cols=18 Identities=0% Similarity=0.296 Sum_probs=14.4
Q ss_pred CcEEEEeCCCCeeeEEEe
Q psy3840 100 QHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 100 ~~i~i~d~~~~~~~~~~~ 117 (131)
.+|.|||..+|..+.++-
T Consensus 17 E~V~IvNvnNG~RfeTYv 34 (97)
T 1uhe_A 17 MKVEIVDVNNGERFSTYV 34 (97)
T ss_dssp CEEEEEETTTCCEEEEEC
T ss_pred CEEEEEECCCCceEEEEE
Confidence 468899999888887764
No 363
>1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
Probab=44.37 E-value=37 Score=19.98 Aligned_cols=31 Identities=6% Similarity=0.130 Sum_probs=21.8
Q ss_pred CeEEEEEcCCC-c-EEEEeCCCcEEEEeCCCCe
Q psy3840 81 PALDVDWQSNT-S-FASCSTDQHIHVCKLHSDK 111 (131)
Q Consensus 81 ~v~~~~~~~~~-~-~~~~~~d~~i~i~d~~~~~ 111 (131)
.+.++.|...+ . +++...++++.+||.+-|+
T Consensus 120 hllsl~f~~g~aHaia~S~~g~~~tlFDPN~GE 152 (188)
T 1ukf_A 120 HLLSLRFANVQGHAIACSCEGSQFKLFDPNLGE 152 (188)
T ss_dssp EEEEEEETTTEEEEEEEEEETTEEEEEETTTEE
T ss_pred eEEEEEecCCCceeEEeccCCCeEEEeCCCCce
Confidence 34556666543 2 7777788999999988654
No 364
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=39.29 E-value=46 Score=23.07 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=35.2
Q ss_pred CCEEEEEeCCCeEEEEcCC-C----Cceeecc--cccccEE-EEEEcCCCCEEEEEeCCCcEEE
Q psy3840 8 GSFLATGSYDGYARIWTSD-G----SLKSTLG--QHKGPIF-ALKWNKRGNYILSAGVDKTTII 63 (131)
Q Consensus 8 ~~~l~~~~~d~~i~~~~~~-~----~~~~~~~--~~~~~i~-~~~~~~~~~~~~s~~~d~~i~~ 63 (131)
-..+..|..+|.|.-..+. + ..+..+. ....+|. .|.++++...++.++.++.+++
T Consensus 413 ~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 413 YSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 3467778888887654433 1 1222221 2245775 8889998888888887766654
No 365
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=38.52 E-value=43 Score=17.45 Aligned_cols=25 Identities=4% Similarity=-0.064 Sum_probs=14.8
Q ss_pred EEEEcCCCcEEEEeCCCcEEEEeCCC
Q psy3840 84 DVDWQSNTSFASCSTDQHIHVCKLHS 109 (131)
Q Consensus 84 ~~~~~~~~~~~~~~~d~~i~i~d~~~ 109 (131)
.+.+..+|.|+.-..++.+ +|...+
T Consensus 60 ~l~l~~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 60 FMRLGHSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp EEEECTTSCEEEECTTSCE-EEECSC
T ss_pred EEEEeCCCcEEEECCCCCE-EEECCC
Confidence 4556667776655555544 677654
No 366
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=37.78 E-value=79 Score=20.22 Aligned_cols=99 Identities=11% Similarity=0.172 Sum_probs=58.9
Q ss_pred CCCEEEEEeCCCeEEEEcCC--------CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECC--Ccc------
Q psy3840 7 NGSFLATGSYDGYARIWTSD--------GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA--SGQ------ 70 (131)
Q Consensus 7 ~~~~l~~~~~d~~i~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~--~~~------ 70 (131)
+...++..+.+|.++--.+. +.....+.. .+.+..+........++..+..|.+..+... .-+
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a 186 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT 186 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC
Confidence 46788888999998876543 111223333 3455555555555677778888888877765 211
Q ss_pred ---eeeeeecCCCCeEEEEEcCC-CcEEEEeCCCcEEEEeC
Q psy3840 71 ---CEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKL 107 (131)
Q Consensus 71 ---~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~ 107 (131)
....+. ....+.++...++ ..++..+..|.++.-.+
T Consensus 187 ~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l 226 (327)
T 3uc1_A 187 SGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAI 226 (327)
T ss_dssp BCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEG
T ss_pred CCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEH
Confidence 111122 2345666655544 45788888888776654
No 367
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=37.14 E-value=89 Score=20.63 Aligned_cols=78 Identities=6% Similarity=0.038 Sum_probs=50.5
Q ss_pred cEEEEEEcCCCCEEEEE-eC--------------CCcEEEEECCCc--ceeeeeecC------CCCeEEEEEc---CC--
Q psy3840 39 PIFALKWNKRGNYILSA-GV--------------DKTTIIWDAASG--QCEQQFSFH------SAPALDVDWQ---SN-- 90 (131)
Q Consensus 39 ~i~~~~~~~~~~~~~s~-~~--------------d~~i~~~d~~~~--~~~~~~~~~------~~~v~~~~~~---~~-- 90 (131)
.|..+...+.+++.+.= +. ..++..||+.+. +.++.+.-. ......+.+. |.
T Consensus 88 sV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~ 167 (381)
T 3q6k_A 88 SIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGD 167 (381)
T ss_dssp CEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTT
T ss_pred EeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCC
Confidence 56777888877765532 21 125778999998 887776431 2346677776 21
Q ss_pred ---Cc-EEEEeCCCcEEEEeCCCCeeeEEE
Q psy3840 91 ---TS-FASCSTDQHIHVCKLHSDKPVKSF 116 (131)
Q Consensus 91 ---~~-~~~~~~d~~i~i~d~~~~~~~~~~ 116 (131)
+. +++-..+..|.|+|+++++.-+..
T Consensus 168 c~~~~aYItD~~~~gLIVydl~~~~swRv~ 197 (381)
T 3q6k_A 168 CSETFVYITNFLRGALFIYDHKKQDSWNVT 197 (381)
T ss_dssp SCSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCccEEEEEcCCCCcEEEEECCCCcEEEEc
Confidence 23 444445678999999998766554
No 368
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=36.43 E-value=47 Score=17.26 Aligned_cols=13 Identities=23% Similarity=0.197 Sum_probs=6.4
Q ss_pred EEEEEcCCCCEEE
Q psy3840 41 FALKWNKRGNYIL 53 (131)
Q Consensus 41 ~~~~~~~~~~~~~ 53 (131)
..+.+..++++++
T Consensus 22 ~~L~~q~dGnLvl 34 (111)
T 3mez_A 22 AAFVMQGDCNLVL 34 (111)
T ss_dssp EEEEECTTSCEEE
T ss_pred EEEEEccCCeEEE
Confidence 3444455555544
No 369
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=36.24 E-value=42 Score=17.36 Aligned_cols=18 Identities=0% Similarity=0.375 Sum_probs=15.4
Q ss_pred CcEEEEeCCCCeeeEEEe
Q psy3840 100 QHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 100 ~~i~i~d~~~~~~~~~~~ 117 (131)
.+|.+||..+|..+.++.
T Consensus 18 E~V~IvNvnNG~Rf~TYv 35 (96)
T 1vc3_B 18 EQVDIYDITNGARLTTYA 35 (96)
T ss_dssp CEEEEEETTTCCEEEEEC
T ss_pred CEEEEEECCCCceEEEEE
Confidence 479999999999888874
No 370
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=35.76 E-value=24 Score=18.86 Aligned_cols=19 Identities=11% Similarity=0.478 Sum_probs=14.3
Q ss_pred CCcEEEEeCCCCeeeEEEe
Q psy3840 99 DQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 99 d~~i~i~d~~~~~~~~~~~ 117 (131)
...|.|||+.+|..+.++.
T Consensus 44 ~E~V~I~NvnNG~Rf~TYv 62 (114)
T 3oug_A 44 NEKVQVVNLNNGERLETYV 62 (114)
T ss_dssp TBEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEECCCCceEEEEE
Confidence 3468888888888877764
No 371
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=35.63 E-value=1.2e+02 Score=21.54 Aligned_cols=55 Identities=5% Similarity=0.008 Sum_probs=35.1
Q ss_pred CEEEEEeCCCeEEEE-cCCCC----c--eeecc--cccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy3840 9 SFLATGSYDGYARIW-TSDGS----L--KSTLG--QHKGPIFALKWNKRGNYILSAGVDKTTII 63 (131)
Q Consensus 9 ~~l~~~~~d~~i~~~-~~~~~----~--~~~~~--~~~~~i~~~~~~~~~~~~~s~~~d~~i~~ 63 (131)
..+..|+.+|.|+-. ..... . +..+. ....+|..|.++++...++.++.++..++
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 466778888987643 22211 1 11222 23568899999998888888877766554
No 372
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=34.76 E-value=45 Score=17.46 Aligned_cols=18 Identities=6% Similarity=0.396 Sum_probs=15.3
Q ss_pred CcEEEEeCCCCeeeEEEe
Q psy3840 100 QHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 100 ~~i~i~d~~~~~~~~~~~ 117 (131)
.+|.+||+.+|..+.++.
T Consensus 18 E~V~I~NvnNG~Rf~TYv 35 (102)
T 3plx_B 18 EKVQVVNVNNGARFETYT 35 (102)
T ss_dssp CEEEEEETTTCCEEEEEC
T ss_pred CEEEEEECCCCcEEEEEE
Confidence 479999999999888874
No 373
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=32.93 E-value=94 Score=19.63 Aligned_cols=100 Identities=9% Similarity=0.072 Sum_probs=58.6
Q ss_pred CCCEEEEEeCCCeEEEEcCC--------CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc----c---e
Q psy3840 7 NGSFLATGSYDGYARIWTSD--------GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG----Q---C 71 (131)
Q Consensus 7 ~~~~l~~~~~d~~i~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~----~---~ 71 (131)
+...++..+.+|.++--.+. |.....+.. .+.+..+....+...++..+.+|....+....- + -
T Consensus 113 ~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G 191 (312)
T 1suu_A 113 DDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQG 191 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCC
T ss_pred CCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCC
Confidence 35667777888888876553 222233333 455666555555667888889998888876431 1 1
Q ss_pred eeeeec-CCCCeEEEEEcCC-CcEEEEeCCCcEEEEeC
Q psy3840 72 EQQFSF-HSAPALDVDWQSN-TSFASCSTDQHIHVCKL 107 (131)
Q Consensus 72 ~~~~~~-~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~ 107 (131)
+..+.- ....+..+...++ ..+++.+..|......+
T Consensus 192 v~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~ 229 (312)
T 1suu_A 192 VCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNM 229 (312)
T ss_dssp EECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEG
T ss_pred eEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEH
Confidence 111111 2345555555433 44777777787777765
No 374
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=32.60 E-value=30 Score=19.30 Aligned_cols=19 Identities=11% Similarity=0.387 Sum_probs=15.0
Q ss_pred CCcEEEEeCCCCeeeEEEe
Q psy3840 99 DQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 99 d~~i~i~d~~~~~~~~~~~ 117 (131)
...|.|||+.+|..+.++.
T Consensus 58 ~EkV~IvNvnNG~RfeTYv 76 (143)
T 1pqh_A 58 NEAIDIWNVTNGKRFSTYA 76 (143)
T ss_dssp TCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEECCCCceEEEEE
Confidence 4578899999888887764
No 375
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=29.53 E-value=73 Score=17.35 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=12.8
Q ss_pred EEEEcCCCCceeeccc--ccccEEEEEEc
Q psy3840 20 ARIWTSDGSLKSTLGQ--HKGPIFALKWN 46 (131)
Q Consensus 20 i~~~~~~~~~~~~~~~--~~~~i~~~~~~ 46 (131)
|.|+|..|+.++++.. .......+.|+
T Consensus 43 v~I~d~~G~~V~t~~~~~~~aG~~~~~WD 71 (138)
T 3c12_A 43 FEITDANGTFVKQLSVPASAAGEVSFAWD 71 (138)
T ss_dssp EEEECSSCCEEEEEEEEESSSEEEEEEEC
T ss_pred EEEEeCCCCEEEEEEcCCcCCceEEEEEC
Confidence 4555655665555431 22234455554
No 376
>2oqj_C Peptide 2G12.1 (ACPPSHVLDMRSGTCLAAEGK); immunoglobulin fold, immune system; 2.80A {Homo sapiens}
Probab=27.98 E-value=30 Score=12.47 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=8.6
Q ss_pred EEEeCCCCeeeEE
Q psy3840 103 HVCKLHSDKPVKS 115 (131)
Q Consensus 103 ~i~d~~~~~~~~~ 115 (131)
++.|++++.++..
T Consensus 6 hvldmrsgtclaa 18 (26)
T 2oqj_C 6 HVLDMRSGTCLAA 18 (26)
T ss_pred heeeccCCceEee
Confidence 4667787777653
No 377
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=24.28 E-value=2e+02 Score=20.66 Aligned_cols=55 Identities=7% Similarity=0.067 Sum_probs=34.8
Q ss_pred CEEEEEeCCCeEEEE-cCCCC--ceeec--ccccccEEEEEEcCCC--CEEEEEeCCCcEEE
Q psy3840 9 SFLATGSYDGYARIW-TSDGS--LKSTL--GQHKGPIFALKWNKRG--NYILSAGVDKTTII 63 (131)
Q Consensus 9 ~~l~~~~~d~~i~~~-~~~~~--~~~~~--~~~~~~i~~~~~~~~~--~~~~s~~~d~~i~~ 63 (131)
..++.|..+|.|.-. ..... .+... .....+|..|.++++. ..++.++.++.+++
T Consensus 416 tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 416 DVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 467888999987533 33221 11111 2234688899999977 88888877765554
No 378
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=23.93 E-value=32 Score=19.08 Aligned_cols=19 Identities=0% Similarity=0.335 Sum_probs=14.5
Q ss_pred CCcEEEEeCCCCeeeEEEe
Q psy3840 99 DQHIHVCKLHSDKPVKSFE 117 (131)
Q Consensus 99 d~~i~i~d~~~~~~~~~~~ 117 (131)
..+|.|||+.+|..+.++.
T Consensus 41 ~EkV~IvNvnNG~RfeTYv 59 (139)
T 2c45_A 41 GEQVTIVDIDNGARLVTYA 59 (139)
T ss_dssp SCCEEEEETTTCCEEEECE
T ss_pred CCEEEEEECCCCceEEEEE
Confidence 3578888888888877764
No 379
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}
Probab=22.61 E-value=1.2e+02 Score=17.59 Aligned_cols=36 Identities=6% Similarity=-0.001 Sum_probs=25.3
Q ss_pred EEEEeCCCcEEEEeCCCCeeeEEEec--ccceEEEEee
Q psy3840 93 FASCSTDQHIHVCKLHSDKPVKSFEG--HTRVYYLAMD 128 (131)
Q Consensus 93 ~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~ 128 (131)
+..--..|.|.+||+.++..+.++.. -.+++...+.
T Consensus 135 VfLDye~G~lSFY~v~~~~~i~tF~~~~Fs~pl~P~F~ 172 (191)
T 2wl1_A 135 IFVDYRVGSISFYNVTARSHIYTFASCSFSGPLQPIFS 172 (191)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEECCCCCCSCEEEEEE
T ss_pred EEEEcCCCEEEEEECCCCcceEEeCCCCCCCCEEeEEE
Confidence 34445678999999998888888864 3455555554
No 380
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A
Probab=21.17 E-value=1.2e+02 Score=17.05 Aligned_cols=36 Identities=17% Similarity=0.050 Sum_probs=25.6
Q ss_pred CCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEE
Q psy3840 49 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD 84 (131)
Q Consensus 49 ~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~ 84 (131)
|+-++.--.++++++.|..+...+..++-..-.++.
T Consensus 54 gq~~~L~v~~~tlrLvD~~tk~~L~~~pI~~I~f~~ 89 (148)
T 3d8d_A 54 GKDLLLQLEDETLKLVEPQSQALLHAQPIISIRVWG 89 (148)
T ss_dssp TCEEEEEEETTEEEEECTTTCCEEEEEEGGGCCEEE
T ss_pred CceEEEEEcCCeEEEecCCCCceEEEeeEEEEEEEe
Confidence 455555667889999999998888777655444433
No 381
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=20.99 E-value=2.3e+02 Score=20.04 Aligned_cols=28 Identities=7% Similarity=0.026 Sum_probs=22.8
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy3840 37 KGPIFALKWNKRGNYILSAGVDKTTIIW 64 (131)
Q Consensus 37 ~~~i~~~~~~~~~~~~~s~~~d~~i~~~ 64 (131)
..+|..|.++++...++.++.++.+++-
T Consensus 469 ~~pI~~L~ls~~~~~LYV~s~~~V~qVP 496 (565)
T 3oky_B 469 DKRIMGMQLDRASGSLYVAFSTCVIKVP 496 (565)
T ss_dssp CCCCCEEEEEGGGTEEEEECSSCEEEEE
T ss_pred CCceEEEEEcCCCCEEEEEecCeEEEee
Confidence 3578899999988899998888877753
No 382
>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} SCOP: b.69.14.1
Probab=20.09 E-value=2.1e+02 Score=19.40 Aligned_cols=56 Identities=13% Similarity=0.184 Sum_probs=29.9
Q ss_pred EEEEeCCCeEEEEcC-C--CCceee-ccccc-ccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy3840 11 LATGSYDGYARIWTS-D--GSLKST-LGQHK-GPIFALKWNKRGNYILSAGVDKTTIIWDAA 67 (131)
Q Consensus 11 l~~~~~d~~i~~~~~-~--~~~~~~-~~~~~-~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~ 67 (131)
++..+..|.|+.|.- . ++.+.. +.-.. ..+..+. ..++..++.+...|++....++
T Consensus 111 lliVsptG~VryWesIs~~~~~~ei~~~L~~~E~vt~l~-n~epaGfIlaTStgrl~~lsir 171 (450)
T 1xks_A 111 VMVATREGSIRYWPSLAGEDTYTEAFVDSGGDKTYSFLT-AVQGGSFILSSSGSQLIRLIPE 171 (450)
T ss_dssp EEEECTTCEEEEESCTTCTTCCEEEECC----CCEEEEE-EETTTEEEEEETTCCEEEEEEC
T ss_pred EEEEcCCccEEEccccCCCCceEEEEecCCCCceEEEEe-ecCCceEEEEeccceEEEEEec
Confidence 334445999999973 2 222221 11122 4555554 3345566666677777766665
Done!