RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3840
(131 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 93.9 bits (234), Expect = 3e-24
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 3 SSRNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTT 61
++ +G++LA+GS D R+W G TL H + ++ ++ G + S+ DKT
Sbjct: 58 AASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTI 117
Query: 62 IIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT 120
+WD +G+C H+ V + + +F AS S D I + L + K V + GHT
Sbjct: 118 KVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT 177
Query: 121 R 121
Sbjct: 178 G 178
Score = 83.2 bits (206), Expect = 3e-20
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+G+F+A+ S DG ++W G +TL H G + ++ ++ G +LS+ D T +WD
Sbjct: 146 DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD 205
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT-RVY 123
++G+C H V + + AS S D I V L + + V++ GHT V
Sbjct: 206 LSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT 265
Query: 124 YLAMD 128
LA
Sbjct: 266 SLAWS 270
Score = 78.9 bits (195), Expect = 1e-18
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 6 NNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+G L++ S D ++W G +TL H + ++ ++ G ++ S+ D T +W
Sbjct: 103 PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162
Query: 65 DAASGQCEQQFSFHSAPALDVDW-QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT-RV 122
D +G+C + H+ V + S S+D I + L + K + + GH V
Sbjct: 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGV 222
Query: 123 YYLA 126
+A
Sbjct: 223 NSVA 226
Score = 78.9 bits (195), Expect = 1e-18
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 6 NNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+G LATGS DG ++W G L TL H GP+ + + G Y+ S DKT +W
Sbjct: 19 PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW 78
Query: 65 DAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHTR 121
D +G+C + + H++ V + + +S S D+ I V + + K + + GHT
Sbjct: 79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD 136
Score = 67.4 bits (165), Expect = 2e-14
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+G L + S DG ++W S G TL H+ + ++ ++ G + S D T +WD
Sbjct: 188 DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWD 247
Query: 66 AASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHV 104
+G+C Q S H+ + W + AS S D I +
Sbjct: 248 LRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287
Score = 65.8 bits (161), Expect = 6e-14
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 29 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ 88
L+ TL H G + + ++ G + + D T +WD +G+ + H+ P DV
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 89 SN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
++ T AS S+D+ I + L + + V++ GHT
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHT 93
Score = 50.4 bits (121), Expect = 3e-08
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 7 NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
+G LA+GS DG R+W G TL H + +L W+ G + S D T IWD
Sbjct: 230 DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 61.6 bits (148), Expect = 3e-12
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Query: 7 NGSFLATGSYDGYARIWT--SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+GS LA+GS DG R+W S SL TL H + ++ ++ G + S D T +W
Sbjct: 252 DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311
Query: 65 DAASGQCEQQFSF--HSAPALDVDWQSNTS--FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
D +G+ + H P + + + S + S D I + L + KP+K+ EGH+
Sbjct: 312 DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS 371
Query: 121 RVYYLAM 127
V ++
Sbjct: 372 NVLSVSF 378
Score = 55.1 bits (131), Expect = 7e-10
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 4 SRNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTT 61
S + + S DG ++W G STL H P+ +L ++ G I S D T
Sbjct: 164 SPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI 223
Query: 62 IIWDAASGQCEQQ-FSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSD-KPVKSFEGH 119
+WD ++G+ + S HS + + AS S+D I + L S +++ GH
Sbjct: 224 RLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH 283
Query: 120 T 120
+
Sbjct: 284 S 284
Score = 52.8 bits (125), Expect = 5e-09
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 10 FLATGSYDGYARIW--TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDA 66
LA+ S DG ++W ++ G L TL H + +L ++ G + S +D T +WD
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185
Query: 67 ASGQCEQQFSFHSAPALDVDWQSNTS--FASCSTDQHIHVCKLHSDKPVKS-FEGHT 120
+G+ + H+ P + + + AS S+D I + L + K ++S GH+
Sbjct: 186 RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS 242
Score = 46.6 bits (109), Expect = 6e-07
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 6 NNGSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKW-NKRGNYILSAG--VDK 59
+G L +GS DG ++W D +KS G H + L + GN IL A +D
Sbjct: 75 PDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG 134
Query: 60 TTIIWDAAS-GQCEQQFSFHSAPALDVDWQSN--TSFASCSTDQHIHVCKLHSDKPVKSF 116
T +WD ++ G+ + HS + + + + S D I + L + KP+ +
Sbjct: 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL 194
Query: 117 EGHTR 121
GHT
Sbjct: 195 AGHTD 199
Score = 46.6 bits (109), Expect = 7e-07
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 7/127 (5%)
Query: 4 SRNNGSFLATGSYDGYARIW--TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTT 61
S + G +A+GS DG R+W ++ L+STL H + + ++ G+ + S D T
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTI 265
Query: 62 IIWDAASG-QCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKL--HSDKPVKSFE 117
+WD S + S HS+ L V + + AS S+D + + L + +
Sbjct: 266 RLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLK 325
Query: 118 GHTRVYY 124
GH
Sbjct: 326 GHEGPVS 332
Score = 44.3 bits (103), Expect = 3e-06
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Query: 1 MQSSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKT 60
+ S + ++ GS DG R+W + + ++ ++ G + S D T
Sbjct: 334 LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGT 393
Query: 61 TIIWDAASGQCEQQFSFHSAPALDVDW-QSNTSFASCSTDQHIHVCKLHSDKPVKSF 116
+WD ++G + H++ +D+ S AS S+D I + L + SF
Sbjct: 394 VRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
Score = 39.7 bits (91), Expect = 2e-04
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 6 NNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
+G +++GS DG R+W S GSL L H + +L ++ G + S D T +W
Sbjct: 380 PDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439
Query: 65 DAASGQCEQQFS 76
D + FS
Sbjct: 440 DLKTSLKSVSFS 451
Score = 35.8 bits (81), Expect = 0.004
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 30 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE--QQFSFHSAPALDVDW 87
L H+ I ++ ++ G +LS D T +WD +G+ H + +
Sbjct: 58 SLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLAL 117
Query: 88 QSNTS----FASCSTDQHIHVCKLHSD-KPVKSFEGHT 120
S AS S D + + L + K +++ EGH+
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHS 155
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats
(blades) of the beta propeller domain.
Length = 40
Score = 41.1 bits (97), Expect = 3e-06
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 26 DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
G L TL H GP+ ++ ++ G Y+ S D T +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 29.2 bits (66), Expect = 0.092
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 68 SGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHV 104
SG+ + H+ P V + + AS S D I +
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKL 38
Score = 27.3 bits (61), Expect = 0.40
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 6 NNGSFLATGSYDGYARIW 23
+G +LA+GS DG ++W
Sbjct: 22 PDGKYLASGSDDGTIKLW 39
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 39.3 bits (92), Expect = 1e-05
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 27 GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
G L TL H GP+ ++ ++ GN + S D T +WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 27.7 bits (62), Expect = 0.37
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 7 NGSFLATGSYDGYARIW 23
+G+ LA+GS DG R+W
Sbjct: 22 DGNLLASGSDDGTVRVW 38
Score = 26.5 bits (59), Expect = 0.78
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 69 GQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHV 104
G+ + H+ P V + + + AS S D + V
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRV 37
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 35.3 bits (81), Expect = 0.005
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 50 NYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLH 108
N + SAG D +WD G+ + HS ++W + S + S D+ +++
Sbjct: 139 NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR 198
Query: 109 SDKPVKSFEGH 119
V S E H
Sbjct: 199 DGTIVSSVEAH 209
Score = 29.5 bits (66), Expect = 0.51
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 11 LATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 69
LA+ D +W G + H I +L+WN G+ + + DK I D G
Sbjct: 141 LASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG 200
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 35.3 bits (81), Expect = 0.006
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 11 LATGSYDGYARIWT---SDGSLKST------LGQHKGPIFALKWNKRGNYIL-SAGVDKT 60
LA+GS D R+W +D S+K L HK I + WN YI+ S+G D
Sbjct: 90 LASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF 149
Query: 61 TIIWD 65
IWD
Sbjct: 150 VNIWD 154
Score = 26.1 bits (57), Expect = 6.8
Identities = 16/73 (21%), Positives = 28/73 (38%)
Query: 7 NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
N + + +D + IW + ++ + +LKWN +GN + V K I D
Sbjct: 137 NYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDP 196
Query: 67 ASGQCEQQFSFHS 79
+ F H
Sbjct: 197 RKQEIASSFHIHD 209
>gnl|CDD|149648 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A.
This is a family of eukaryotic translation initiation
factors.
Length = 194
Score = 33.0 bits (76), Expect = 0.023
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 18/88 (20%)
Query: 20 ARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG-------VDKTTIIWDAASGQCE 72
+ G++ +LG + P + W+ G +L AG ++ WD + +
Sbjct: 85 ITFFDLKGNVIHSLG--EQPRNTIFWSPFGRLVLLAGFGNLAGQIE----FWDVKN--KK 136
Query: 73 QQFSFHSAPALDVDWQSNTS--FASCST 98
+ + ++ A D +W S F + +T
Sbjct: 137 KIATAEASNATDCEW-SPDGRYFLTATT 163
Score = 27.6 bits (62), Expect = 1.8
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 43 LKWNKRGNYIL---SAGVDKTT 61
+KWNK G Y+L S VDKT
Sbjct: 11 MKWNKNGTYLLVLVSTDVDKTN 32
>gnl|CDD|227689 COG5402, COG5402, Uncharacterized conserved protein [Function
unknown].
Length = 194
Score = 29.0 bits (65), Expect = 0.64
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 7 NGSFLATGSYD-----GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYIL 53
+ LA G + ++DGS T+ P L GN+IL
Sbjct: 113 DLHVLAPGEGRPSALNSRTVLRSADGSWVITVSPDAQPGNWLPVRGEGNFIL 164
>gnl|CDD|204167 pfam09214, Prd1-P2, Bacteriophage Prd1, adsorption protein P2.
Members of this family form a set of bacteriophage
adsorption proteins, composed mainly of beta-strands
whose complicated topology forms an elongated
seahorse-shaped molecule with a distinct head,
containing a pseudo-beta propeller structure with
approximate 6-fold symmetry, and tail. They are required
for the attachment of the phage to the host conjugative
DNA transfer complex. This is a poorly understood large
transmembrane complex of unknown architecture, with at
least 11 different proteins.
Length = 559
Score = 27.3 bits (60), Expect = 2.7
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 28 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTII 63
SL ++G N G + +S G+DK+ +I
Sbjct: 394 SLPLSIGGSGAAFDEWLANNCGLFPMSFGLDKSALI 429
>gnl|CDD|236063 PRK07586, PRK07586, hypothetical protein; Validated.
Length = 514
Score = 26.7 bits (60), Expect = 3.6
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 12 ATGSYDGYARIWTSDGSLKSTLGQHKGPIFA 42
ATG+ DGYAR+ G +TL H GP A
Sbjct: 51 ATGAADGYARM---AGKPAATL-LHLGPGLA 77
>gnl|CDD|218719 pfam05729, NACHT, NACHT domain. This NTPase domain is found in
apoptosis proteins as well as those involved in MHC
transcription activation. This family is closely
related to pfam00931.
Length = 165
Score = 25.7 bits (57), Expect = 5.8
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Query: 55 AGVDKTT----IIWDAASGQCEQQFSF 77
AG KTT I A G+ Q F F
Sbjct: 9 AGSGKTTLLQKIALLWAQGKLPQDFDF 35
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 25.9 bits (58), Expect = 7.8
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 10/29 (34%)
Query: 11 LATGSY---------DGYARIWTSDGSLK 30
LATGS DG IWTSD +L
Sbjct: 140 LATGSRPRELPGIEIDG-RVIWTSDEALN 167
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.131 0.415
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,254,140
Number of extensions: 493921
Number of successful extensions: 403
Number of sequences better than 10.0: 1
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 37
Length of query: 131
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 45
Effective length of database: 7,123,158
Effective search space: 320542110
Effective search space used: 320542110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)