BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3841
(73 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 26 HVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKE 64
H ILDVS V RL H++PI + I+ +S + + EI +
Sbjct: 622 HCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINK 660
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 35.8 bits (81), Expect = 0.005, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 26 HVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKE 64
H ILDVS V RL H++PI + I+ +S + + EI +
Sbjct: 196 HCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINK 234
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 26 HVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKE 64
H ILDVS V RL H++PI + I+ +S + + EI +
Sbjct: 202 HCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINK 240
>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold
Proteins As Specific Phospho-Protein Binding Modules
Length = 296
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 26 HVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKE 64
H ILDVS ++RL +YPI + IK KS + I E+ +
Sbjct: 197 HCILDVSGNAIKRLQIAQLYPISIFIKPKSMENIMEMNK 235
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 33.5 bits (75), Expect = 0.033, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 26 HVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEI 62
H ILDVS ++RL +YP+ + IK KS + E+
Sbjct: 191 HCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEM 227
>pdb|3LH5|A Chain A, Crystal Structure Of The Sh3-Guanylate Kinase Core Domain
Of Zo-1
Length = 251
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 24 NAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIK 63
+ H +LDV+ V+RL+ YPIV+ + S + +K ++
Sbjct: 149 DKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR 188
>pdb|3KFV|A Chain A, Crystal Structure Of The Sh3-Kinase Fragment Of Tight
Junction Protein 3 (Tjp3) In Apo-Form
Length = 308
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 24 NAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKE 64
+ H +LDV+ + +ERL+ YPIV+ +S +K +++
Sbjct: 198 DKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQ 238
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 24 NAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIK 63
+ H +LDV+ V+RL+ YPIV+ + S + +K ++
Sbjct: 281 DKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR 320
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 29.6 bits (65), Expect = 0.44, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 24 NAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIK 63
+ H +LDV+ V+RL+ YPIV+ + S + +K ++
Sbjct: 289 DKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR 328
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,185,811
Number of Sequences: 62578
Number of extensions: 64867
Number of successful extensions: 112
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 9
length of query: 73
length of database: 14,973,337
effective HSP length: 43
effective length of query: 30
effective length of database: 12,282,483
effective search space: 368474490
effective search space used: 368474490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)