Query psy3841
Match_columns 73
No_of_seqs 100 out of 272
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 18:48:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3841.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3841hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tvt_A Disks large 1 tumor sup 99.7 1.3E-18 4.5E-23 125.8 4.9 63 4-66 169-231 (292)
2 1kjw_A Postsynaptic density pr 99.7 2.5E-17 8.6E-22 118.5 5.4 62 4-65 174-235 (295)
3 2xkx_A Disks large homolog 4; 99.6 2.5E-16 8.6E-21 123.5 5.7 63 4-66 600-662 (721)
4 3shw_A Tight junction protein 99.6 1.6E-15 5.5E-20 115.9 5.7 59 8-66 265-323 (468)
5 3tsz_A Tight junction protein 99.5 9E-15 3.1E-19 108.7 5.7 59 8-66 273-331 (391)
6 3kfv_A Tight junction protein 99.5 2.8E-14 9.7E-19 104.5 5.3 55 11-65 185-239 (308)
7 1ex7_A Guanylate kinase; subst 99.4 1.2E-13 4E-18 94.1 5.0 58 4-61 72-130 (186)
8 3ney_A 55 kDa erythrocyte memb 99.4 4.3E-13 1.5E-17 92.3 4.7 54 4-57 90-143 (197)
9 4dey_A Voltage-dependent L-typ 99.1 8.5E-11 2.9E-15 87.3 5.0 53 10-62 215-268 (337)
10 1kgd_A CASK, peripheral plasma 98.9 4.9E-10 1.7E-14 73.3 2.7 57 4-60 76-132 (180)
11 3a00_A Guanylate kinase, GMP k 98.9 1E-09 3.6E-14 71.9 4.2 58 4-61 72-130 (186)
12 3tau_A Guanylate kinase, GMP k 98.8 1.4E-09 4.8E-14 72.7 1.5 57 4-60 79-135 (208)
13 2qor_A Guanylate kinase; phosp 98.5 1.4E-07 4.8E-12 62.3 5.4 58 4-61 83-142 (204)
14 1lvg_A Guanylate kinase, GMP k 98.4 4.1E-07 1.4E-11 60.4 5.6 58 4-61 75-132 (198)
15 1s96_A Guanylate kinase, GMP k 98.2 1.3E-06 4.6E-11 59.7 4.7 57 5-61 89-145 (219)
16 3tr0_A Guanylate kinase, GMP k 98.1 2.9E-06 9.9E-11 54.9 4.9 58 4-61 77-134 (205)
17 3lnc_A Guanylate kinase, GMP k 97.9 1.3E-05 4.4E-10 53.5 4.1 58 4-61 98-156 (231)
18 2j41_A Guanylate kinase; GMP, 97.5 0.0001 3.4E-09 47.4 4.5 56 4-59 77-132 (207)
19 1z6g_A Guanylate kinase; struc 97.3 0.00035 1.2E-08 46.8 5.4 57 5-61 95-153 (218)
20 1znw_A Guanylate kinase, GMP k 87.0 0.77 2.6E-05 29.7 3.9 54 8-61 96-149 (207)
21 1gvn_B Zeta; postsegregational 69.5 2.8 9.5E-05 28.9 2.4 51 7-57 92-151 (287)
22 2rhm_A Putative kinase; P-loop 68.4 5.4 0.00019 24.5 3.4 41 15-55 68-115 (193)
23 2lnd_A De novo designed protei 61.5 7.6 0.00026 24.1 3.0 39 12-66 35-73 (112)
24 2dy3_A Alanine racemase; alpha 56.1 8.4 0.00029 27.0 2.9 56 7-62 35-91 (361)
25 1xfc_A Alanine racemase; alpha 54.8 5.8 0.0002 28.2 1.9 54 8-61 44-98 (384)
26 2c95_A Adenylate kinase 1; tra 50.0 30 0.001 21.1 4.5 46 16-61 80-129 (196)
27 3co8_A Alanine racemase; prote 48.9 16 0.00053 26.0 3.3 56 7-63 41-98 (380)
28 1rcq_A Catabolic alanine racem 48.9 10 0.00035 26.6 2.4 56 7-62 34-90 (357)
29 2vli_A Antibiotic resistance p 48.7 34 0.0012 20.6 4.6 48 15-62 67-122 (183)
30 1qhx_A CPT, protein (chloramph 47.4 36 0.0012 20.5 4.5 24 10-33 72-95 (178)
31 1nn5_A Similar to deoxythymidy 47.3 45 0.0015 20.6 5.1 16 15-30 84-99 (215)
32 1bd0_A Alanine racemase; isome 46.0 16 0.00054 26.2 3.0 56 7-63 40-97 (388)
33 2vd8_A Alanine racemase; pyrid 45.8 20 0.00067 25.6 3.5 55 7-62 44-100 (391)
34 2rjg_A Alanine racemase; alpha 44.6 9.9 0.00034 27.1 1.8 55 7-62 55-110 (379)
35 3mgd_A Predicted acetyltransfe 44.0 14 0.00047 21.0 2.1 45 2-46 93-140 (157)
36 1ik9_C DNA ligase IV; DNA END 43.9 20 0.00067 18.2 2.4 21 3-23 12-33 (37)
37 3oqi_A YVMC, putative uncharac 43.7 12 0.00041 26.7 2.0 38 15-52 20-67 (257)
38 4ecl_A Serine racemase, vantg; 43.3 27 0.00092 25.1 3.9 55 7-62 39-95 (374)
39 2xb4_A Adenylate kinase; ATP-b 42.2 53 0.0018 21.1 4.9 48 16-63 67-124 (223)
40 3e5p_A Alanine racemase; ALR, 40.4 24 0.00081 25.5 3.2 55 7-62 41-97 (371)
41 1ly1_A Polynucleotide kinase; 39.7 51 0.0017 19.6 4.3 49 14-62 65-123 (181)
42 3i3g_A N-acetyltransferase; ma 39.4 30 0.001 19.7 3.1 48 2-49 105-155 (161)
43 1vfs_A Alanine racemase; TIM-b 38.8 20 0.00068 25.5 2.6 55 7-61 39-94 (386)
44 3s6f_A Hypothetical acetyltran 38.6 24 0.00083 20.4 2.6 45 2-46 82-127 (145)
45 1knq_A Gluconate kinase; ALFA/ 38.2 65 0.0022 19.3 5.0 42 20-62 76-121 (175)
46 2plr_A DTMP kinase, probable t 37.2 70 0.0024 19.5 5.2 47 17-63 79-140 (213)
47 4a3q_A Alanine racemase 1; iso 36.6 41 0.0014 24.4 4.0 56 7-62 40-96 (382)
48 2v54_A DTMP kinase, thymidylat 35.0 78 0.0027 19.3 5.0 18 15-32 77-94 (204)
49 3zvl_A Bifunctional polynucleo 34.9 34 0.0012 24.6 3.3 50 10-60 295-351 (416)
50 1cjw_A Protein (serotonin N-ac 33.1 63 0.0022 18.0 3.8 47 2-48 98-148 (166)
51 3b79_A Toxin secretion ATP-bin 32.8 56 0.0019 18.9 3.6 45 4-52 31-77 (129)
52 1i96_V Translation initiation 32.4 20 0.00068 21.5 1.5 32 1-32 7-38 (89)
53 3oqv_A ALBC; rossman fold, cyc 32.0 12 0.00039 26.6 0.4 38 15-52 20-67 (247)
54 3im9_A MCAT, MCT, malonyl COA- 31.6 40 0.0014 23.3 3.2 49 15-63 265-313 (316)
55 3ezo_A Malonyl COA-acyl carrie 30.3 38 0.0013 23.6 2.8 50 15-64 265-314 (318)
56 2ze6_A Isopentenyl transferase 29.3 67 0.0023 21.3 3.9 43 15-58 82-130 (253)
57 2fiw_A GCN5-related N-acetyltr 29.1 74 0.0025 18.1 3.7 45 2-46 91-138 (172)
58 1q2y_A Protein YJCF, similar t 28.4 42 0.0014 19.0 2.4 45 2-46 74-121 (140)
59 3mxn_A RECQ-mediated genome in 27.3 62 0.0021 21.4 3.3 38 24-67 119-156 (157)
60 2z0h_A DTMP kinase, thymidylat 27.1 10 0.00034 23.4 -0.6 14 17-30 75-88 (197)
61 3sf4_D Protein inscuteable hom 26.4 59 0.002 17.8 2.6 34 12-45 6-46 (52)
62 3efa_A Putative acetyltransfer 26.3 68 0.0023 18.1 3.1 46 2-47 80-128 (147)
63 2jdc_A Glyphosate N-acetyltran 26.0 73 0.0025 18.0 3.2 49 2-50 78-129 (146)
64 3tqe_A Malonyl-COA-[acyl-carri 25.6 63 0.0021 22.3 3.3 49 15-63 263-311 (316)
65 2p5t_B PEZT; postsegregational 24.9 1.3E+02 0.0045 19.6 4.7 38 17-54 102-146 (253)
66 1tig_A IF3-C, translation init 24.6 21 0.00071 21.6 0.6 33 1-33 12-44 (94)
67 2f96_A Ribonuclease T; RNAse, 24.6 20 0.00068 23.4 0.5 35 3-37 8-42 (224)
68 3gz7_A Putative antibiotic bio 24.3 18 0.00062 21.8 0.3 8 6-13 12-19 (115)
69 3t90_A Glucose-6-phosphate ace 24.3 64 0.0022 17.8 2.7 45 2-46 92-139 (149)
70 2hue_C Histone H4; mini beta s 23.9 43 0.0015 19.3 1.9 34 6-41 5-38 (84)
71 3qat_A Malonyl COA-acyl carrie 23.7 67 0.0023 22.2 3.1 22 15-36 265-286 (318)
72 2qwt_A Transcriptional regulat 23.1 19 0.00066 22.0 0.2 14 5-18 26-39 (196)
73 1kux_A Aralkylamine, serotonin 22.8 1E+02 0.0035 18.4 3.6 46 2-47 127-176 (207)
74 2rek_A Putative TETR-family tr 22.7 16 0.00056 22.1 -0.2 13 5-17 29-41 (199)
75 4dgh_A Sulfate permease family 22.4 66 0.0023 18.9 2.6 29 4-32 25-57 (130)
76 1gmx_A GLPE protein; transfera 22.4 70 0.0024 18.1 2.6 23 12-34 7-29 (108)
77 2g3a_A Acetyltransferase; stru 22.3 76 0.0026 17.9 2.8 48 2-49 84-135 (152)
78 1cl8_A Protein (endonuclease); 21.9 54 0.0018 23.6 2.3 23 31-53 137-170 (276)
79 1mty_G Methane monooxygenase h 21.7 40 0.0014 22.6 1.5 14 6-19 141-154 (162)
80 3fb4_A Adenylate kinase; psych 21.7 1.5E+02 0.0052 18.3 4.7 50 16-65 67-127 (216)
81 3i2v_A Adenylyltransferase and 21.6 59 0.002 18.6 2.2 21 13-33 4-25 (127)
82 1rkt_A Protein YFIR; transcrip 21.5 18 0.00063 22.1 -0.1 13 5-17 25-38 (205)
83 3k89_A Malonyl COA-ACP transac 21.5 79 0.0027 21.8 3.2 49 15-63 261-309 (314)
84 2q0y_A GCN5-related N-acetyltr 21.3 72 0.0025 18.3 2.6 45 2-46 96-143 (153)
85 4hku_A LMO2814 protein, TETR t 21.3 19 0.00063 21.8 -0.2 15 5-19 20-35 (178)
86 2yb5_A FUSC, putative fusidic 21.2 19 0.00066 25.0 -0.1 24 42-65 78-101 (215)
87 1hru_A YRDC gene product; prot 20.8 1.5E+02 0.0052 19.0 4.3 48 13-62 9-71 (188)
88 2cuy_A Malonyl COA-[acyl carri 20.6 79 0.0027 21.8 3.0 22 15-36 252-273 (305)
89 1o13_A Probable NIFB protein; 20.5 82 0.0028 19.3 2.8 39 7-48 62-102 (136)
90 1mhy_G Methane monooxygenase h 20.5 44 0.0015 22.5 1.5 15 6-20 145-159 (169)
91 2pw8_I Lepirudin, hirudin vari 20.4 26 0.00088 20.1 0.3 15 20-34 21-35 (65)
92 2gen_A Probable transcriptiona 20.1 20 0.00069 21.9 -0.2 15 5-19 20-35 (197)
93 2g18_A Phycocyanobilin:ferredo 20.1 40 0.0014 23.6 1.4 16 44-59 163-178 (253)
94 2eh3_A Transcriptional regulat 20.1 21 0.0007 21.4 -0.1 14 5-18 15-29 (179)
No 1
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=99.74 E-value=1.3e-18 Score=125.79 Aligned_cols=63 Identities=25% Similarity=0.417 Sum_probs=59.4
Q ss_pred cccccccccchhHHHHHHhCCCEEEEecCcchhhhhhcCccccEEEEeecCCHHHHHHhhccc
Q psy3841 4 RFNHHGLNREEPGKKTNNINNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKENC 66 (73)
Q Consensus 4 ~~~~~~ygtsi~sVr~V~ekgkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~~lke~r~~~ 66 (73)
.|.+|+||||.++|++++++|++||||+++++++.|+...++|++|||+|||.+.|++++.+.
T Consensus 169 ~~~gn~YGT~~~~V~~~~~~gk~viLdid~qg~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r 231 (292)
T 3tvt_A 169 QYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRM 231 (292)
T ss_dssp EETTEEEEEEHHHHHHHHHHTCEEEECCCTHHHHHHHHTTCCCEEEEECCSCHHHHHHTCTTS
T ss_pred EEccceeEEehHHHHHHHHcCCcEEEeccchhhhhcccccccceEEEEECCCHHHHHHHHhCC
Confidence 578999999999999999999999999999999999999999999999999999999876554
No 2
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=99.68 E-value=2.5e-17 Score=118.50 Aligned_cols=62 Identities=29% Similarity=0.455 Sum_probs=58.7
Q ss_pred cccccccccchhHHHHHHhCCCEEEEecCcchhhhhhcCccccEEEEeecCCHHHHHHhhcc
Q psy3841 4 RFNHHGLNREEPGKKTNNINNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEN 65 (73)
Q Consensus 4 ~~~~~~ygtsi~sVr~V~ekgkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~~lke~r~~ 65 (73)
+|++|+||||.++|++++++|++||||+++++++.|+..+++|++|||+|||.+.|++++.+
T Consensus 174 ~~~g~~YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~~~pi~IfI~pps~~~L~~L~~R 235 (295)
T 1kjw_A 174 QYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKR 235 (295)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHHHCTT
T ss_pred EEcCcEeeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcccCCeEEEEECCCHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999999999999999999987654
No 3
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.63 E-value=2.5e-16 Score=123.50 Aligned_cols=63 Identities=29% Similarity=0.442 Sum_probs=59.4
Q ss_pred cccccccccchhHHHHHHhCCCEEEEecCcchhhhhhcCccccEEEEeecCCHHHHHHhhccc
Q psy3841 4 RFNHHGLNREEPGKKTNNINNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKENC 66 (73)
Q Consensus 4 ~~~~~~ygtsi~sVr~V~ekgkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~~lke~r~~~ 66 (73)
+|++|+||||.++|++++++|++||||+++++++.|+..+++|++|||+|||.+.|++++.+.
T Consensus 600 ~~~g~~YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~~~p~~ifi~pps~~~L~~l~~R~ 662 (721)
T 2xkx_A 600 QYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRI 662 (721)
T ss_pred EECCccceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcccCCEEEEEeCCcHHHHHHHhccC
Confidence 578999999999999999999999999999999999999999999999999999999876543
No 4
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.58 E-value=1.6e-15 Score=115.93 Aligned_cols=59 Identities=24% Similarity=0.290 Sum_probs=53.9
Q ss_pred cccccchhHHHHHHhCCCEEEEecCcchhhhhhcCccccEEEEeecCCHHHHHHhhccc
Q psy3841 8 HGLNREEPGKKTNNINNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKENC 66 (73)
Q Consensus 8 ~~ygtsi~sVr~V~ekgkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~~lke~r~~~ 66 (73)
|+|=||.++|++++++|+||||||.+|+++.|+..+++|++|||+|||.+.|++++++.
T Consensus 265 ~Y~FTs~~~V~~vl~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~e~L~~~~~rl 323 (468)
T 3shw_A 265 SSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRL 323 (468)
T ss_dssp --CBCCHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECSCHHHHHHHHHHH
T ss_pred cCCcccHHHHHHHHHCCCeEEEEeCHHHHHHHHhcCCCCEEEEEeCcCHHHHHHHHhcc
Confidence 56669999999999999999999999999999999999999999999999999876654
No 5
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=99.52 E-value=9e-15 Score=108.67 Aligned_cols=59 Identities=24% Similarity=0.290 Sum_probs=53.5
Q ss_pred cccccchhHHHHHHhCCCEEEEecCcchhhhhhcCccccEEEEeecCCHHHHHHhhccc
Q psy3841 8 HGLNREEPGKKTNNINNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKENC 66 (73)
Q Consensus 8 ~~ygtsi~sVr~V~ekgkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~~lke~r~~~ 66 (73)
|+|=.|.++|++++++|+|||||+++++++.|+..+++|++|||+|||.+.|++++.+.
T Consensus 273 ~Y~Fv~~~~V~~~~~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~~~L~~~~~r~ 331 (391)
T 3tsz_A 273 SSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRL 331 (391)
T ss_dssp --CCCCHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECCCHHHHHHHHHHH
T ss_pred cCCcCcHHHHHHHHHcCCEEEEEeCHHHHHHHHhCCCCCEEEEEeCcCHHHHHHHHhcC
Confidence 56668999999999999999999999999999999999999999999999999875543
No 6
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=99.48 E-value=2.8e-14 Score=104.47 Aligned_cols=55 Identities=24% Similarity=0.353 Sum_probs=51.5
Q ss_pred ccchhHHHHHHhCCCEEEEecCcchhhhhhcCccccEEEEeecCCHHHHHHhhcc
Q psy3841 11 NREEPGKKTNNINNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEN 65 (73)
Q Consensus 11 gtsi~sVr~V~ekgkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~~lke~r~~ 65 (73)
-.|.++|++++++|++|||||.+|+++.|+..+++|++|||.|||.+.|++++.+
T Consensus 185 fis~~~V~~vl~~Gk~~ILDId~QGa~~lk~~~~~pi~IFI~PPS~eeL~~rr~R 239 (308)
T 3kfv_A 185 IIKLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQW 239 (308)
T ss_dssp CCCHHHHHHHHHTTCEEEECCCHHHHHHHHHTTCCCEEEEEEESCHHHHHHHHHH
T ss_pred eecHHHHHHHHHCCCcEEEEECHHHHHHHHhcCCCCEEEEEeCCCHHHHHHHHhc
Confidence 3589999999999999999999999999999999999999999999999986554
No 7
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.43 E-value=1.2e-13 Score=94.05 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=53.9
Q ss_pred cccccccccchhHHHHHHhCCCEEEEecCcchhhhhhc-CccccEEEEeecCCHHHHHH
Q psy3841 4 RFNHHGLNREEPGKKTNNINNAHVILDVSLAGVERLHR-QHVYPIVLLIKFKSTKQIKE 61 (73)
Q Consensus 4 ~~~~~~ygtsi~sVr~V~ekgkhCILdv~~~avk~L~~-~~l~PiVIfIkp~s~~~lke 61 (73)
.|++|+||||.++|++++++|++||||+++++++.++. .++.|++|||.|||.+.|++
T Consensus 72 ~~~g~~YGt~~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~ 130 (186)
T 1ex7_A 72 QFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKK 130 (186)
T ss_dssp EETTEEEEEEHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHH
T ss_pred EEcCceeeeecceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHH
Confidence 57899999999999999999999999999999999987 46789999999999998874
No 8
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=99.37 E-value=4.3e-13 Score=92.28 Aligned_cols=54 Identities=11% Similarity=0.169 Sum_probs=50.9
Q ss_pred cccccccccchhHHHHHHhCCCEEEEecCcchhhhhhcCccccEEEEeecCCHH
Q psy3841 4 RFNHHGLNREEPGKKTNNINNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTK 57 (73)
Q Consensus 4 ~~~~~~ygtsi~sVr~V~ekgkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~ 57 (73)
.|.+|+|||+.++|++++++|++||||+++++++.++...+.|++|||.|||.+
T Consensus 90 ~~~~n~YGt~~~~v~~~l~~G~~vildid~qg~~~~~~~~~~~~~Ifi~Pps~~ 143 (197)
T 3ney_A 90 SYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQG 143 (197)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCGGGHHHHCSTTTCEEEEEEEECCBS
T ss_pred hhhceecccchhhHHHHHhcCCeEEEEECHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 467899999999999999999999999999999999998899999999999984
No 9
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=99.09 E-value=8.5e-11 Score=87.30 Aligned_cols=53 Identities=21% Similarity=0.250 Sum_probs=48.8
Q ss_pred cccchhHHHHHHhCCCEEEEecCcc-hhhhhhcCccccEEEEeecCCHHHHHHh
Q psy3841 10 LNREEPGKKTNNINNAHVILDVSLA-GVERLHRQHVYPIVLLIKFKSTKQIKEI 62 (73)
Q Consensus 10 ygtsi~sVr~V~ekgkhCILdv~~~-avk~L~~~~l~PiVIfIkp~s~~~lke~ 62 (73)
+++.|++|.+++++|++||||+..+ +.+.|+...+.|++|||.|||.+.|++.
T Consensus 215 v~seVe~i~~v~~~Gk~vILDIDvQnGa~qlk~~~~~~i~IFI~PPS~eeLe~R 268 (337)
T 4dey_A 215 VQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRL 268 (337)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEETTCCSGGGTTTSSCCCEEEEECCSCHHHHHHH
T ss_pred HHhHHHHHHHHHhCCCEEEEEeCcHHHHHHHHhcCCCCEEEEEECcCHHHHHHH
Confidence 4567888888999999999999998 9999999999999999999999999975
No 10
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.91 E-value=4.9e-10 Score=73.27 Aligned_cols=57 Identities=14% Similarity=0.098 Sum_probs=50.7
Q ss_pred cccccccccchhHHHHHHhCCCEEEEecCcchhhhhhcCccccEEEEeecCCHHHHH
Q psy3841 4 RFNHHGLNREEPGKKTNNINNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIK 60 (73)
Q Consensus 4 ~~~~~~ygtsi~sVr~V~ekgkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~~lk 60 (73)
.+.+|+|||+.++|++++++|+.||||++++++..++.....|++|||.|||.+.|+
T Consensus 76 ~~~~n~yg~~~~~i~~~l~~g~~vil~id~~g~~~~~~~~~~~~~ifi~~p~~~~l~ 132 (180)
T 1kgd_A 76 SHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGL 132 (180)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCCTTS
T ss_pred EEcCccccccHHHHHHHHHCCCeEEEEECHHHHHHHHHhCCCcEEEEEECCCHHHHH
Confidence 356889999999999999999999999999999999887778899999999866543
No 11
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.90 E-value=1e-09 Score=71.86 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=50.2
Q ss_pred cccccccccchhHHHHHHhCCCEEEEecCcchhhhhhc-CccccEEEEeecCCHHHHHH
Q psy3841 4 RFNHHGLNREEPGKKTNNINNAHVILDVSLAGVERLHR-QHVYPIVLLIKFKSTKQIKE 61 (73)
Q Consensus 4 ~~~~~~ygtsi~sVr~V~ekgkhCILdv~~~avk~L~~-~~l~PiVIfIkp~s~~~lke 61 (73)
+|.+|+|||+.++|++++++|+.|+||+.+++.+.++. ..+.|.+||+.|||.+.|++
T Consensus 72 ~~~~~~yg~~~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~ 130 (186)
T 3a00_A 72 QFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKK 130 (186)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC-----
T ss_pred EEeceeccCcHHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHH
Confidence 56789999999999999999999999999999999998 88999999999999777653
No 12
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.78 E-value=1.4e-09 Score=72.67 Aligned_cols=57 Identities=7% Similarity=0.132 Sum_probs=51.0
Q ss_pred cccccccccchhHHHHHHhCCCEEEEecCcchhhhhhcCccccEEEEeecCCHHHHH
Q psy3841 4 RFNHHGLNREEPGKKTNNINNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIK 60 (73)
Q Consensus 4 ~~~~~~ygtsi~sVr~V~ekgkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~~lk 60 (73)
.|.+|+|||+.+++++++++|++||||++++....+......|.+||+.|||.+.++
T Consensus 79 ~~~~~~yg~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~ps~~~l~ 135 (208)
T 3tau_A 79 EYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELK 135 (208)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCCEEEECCHHHHHHHHHHCTTSEEEEEECTTTTTSS
T ss_pred EEccccCCCcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCCCHHHHH
Confidence 467899999999999999999999999999999999887777899999999866544
No 13
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.52 E-value=1.4e-07 Score=62.28 Aligned_cols=58 Identities=10% Similarity=0.151 Sum_probs=48.9
Q ss_pred cccccccccchhHHHHHHhCCCEEEEecCcchhhhhhcCcc--ccEEEEeecCCHHHHHH
Q psy3841 4 RFNHHGLNREEPGKKTNNINNAHVILDVSLAGVERLHRQHV--YPIVLLIKFKSTKQIKE 61 (73)
Q Consensus 4 ~~~~~~ygtsi~sVr~V~ekgkhCILdv~~~avk~L~~~~l--~PiVIfIkp~s~~~lke 61 (73)
.+.+|.|||+.++|++++++|+.||+|+.++.+..++.... -+++||+.|+|.+.+.+
T Consensus 83 ~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~ 142 (204)
T 2qor_A 83 KYANNFYGTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLG 142 (204)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHH
T ss_pred HhCCCeecCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHH
Confidence 35678999999999999999999999999999998875432 35999999888777654
No 14
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.42 E-value=4.1e-07 Score=60.43 Aligned_cols=58 Identities=19% Similarity=0.358 Sum_probs=51.9
Q ss_pred cccccccccchhHHHHHHhCCCEEEEecCcchhhhhhcCccccEEEEeecCCHHHHHH
Q psy3841 4 RFNHHGLNREEPGKKTNNINNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKE 61 (73)
Q Consensus 4 ~~~~~~ygtsi~sVr~V~ekgkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~~lke 61 (73)
.|.+|+||++.+.+++++++|+.|++|+.++.++.+....+.|.++|+++|+...|.+
T Consensus 75 ~~~~n~~g~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~p~~~ilde 132 (198)
T 1lvg_A 75 EFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQ 132 (198)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCHHHHHH
T ss_pred eecCccCCCCHHHHHHHHHcCCcEEEECCHHHHHHHHhcCCCcEEEEEeCCCHHHHHH
Confidence 3678999999999999999999999999999999888778899999999999777664
No 15
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.22 E-value=1.3e-06 Score=59.68 Aligned_cols=57 Identities=11% Similarity=0.117 Sum_probs=49.3
Q ss_pred ccccccccchhHHHHHHhCCCEEEEecCcchhhhhhcCccccEEEEeecCCHHHHHH
Q psy3841 5 FNHHGLNREEPGKKTNNINNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKE 61 (73)
Q Consensus 5 ~~~~~ygtsi~sVr~V~ekgkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~~lke 61 (73)
|.+++|||+.+.|++++++|+.||||+.+++.+.+...--.+..||+.+++.+.+.+
T Consensus 89 ~~~~~yg~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 89 VFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDR 145 (219)
T ss_dssp ETTEEEEEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHH
T ss_pred HHhccCCCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHccCCEEEEEECCCHHHHHH
Confidence 556789999999999999999999999999999887643357889999999888765
No 16
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.15 E-value=2.9e-06 Score=54.86 Aligned_cols=58 Identities=12% Similarity=0.165 Sum_probs=50.6
Q ss_pred cccccccccchhHHHHHHhCCCEEEEecCcchhhhhhcCccccEEEEeecCCHHHHHH
Q psy3841 4 RFNHHGLNREEPGKKTNNINNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKE 61 (73)
Q Consensus 4 ~~~~~~ygtsi~sVr~V~ekgkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~~lke 61 (73)
.+.++.||++.+.+++++++|+.|++|+.++.+..+......|.+||+.+++.+.+.+
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~ 134 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRE 134 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHH
T ss_pred eeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHH
Confidence 3567889999999999999999999999999999888776678999999998776653
No 17
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.86 E-value=1.3e-05 Score=53.55 Aligned_cols=58 Identities=9% Similarity=0.052 Sum_probs=48.8
Q ss_pred cccccccccchhHHHHHHhCCCEEEEecCcchhhhhhcCc-cccEEEEeecCCHHHHHH
Q psy3841 4 RFNHHGLNREEPGKKTNNINNAHVILDVSLAGVERLHRQH-VYPIVLLIKFKSTKQIKE 61 (73)
Q Consensus 4 ~~~~~~ygtsi~sVr~V~ekgkhCILdv~~~avk~L~~~~-l~PiVIfIkp~s~~~lke 61 (73)
.+.+++||++.+.+++++++|+.|++|+.++....+...- -.+.+||+.+++.+.+.+
T Consensus 98 ~~~~~~~~~~~~~i~~~~~~~~~vild~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~ 156 (231)
T 3lnc_A 98 EVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPPSMEELRR 156 (231)
T ss_dssp EETTEEEEEECTTHHHHHHHTCEEEEECCHHHHHHHHHHSGGGEEEEEEECSCHHHHHH
T ss_pred hhccccCCCCHHHHHHHHHcCCeEEEEcCHHHHHHHHHhcCCCeEEEEEECCcHHHHHH
Confidence 3678899999999999999999999999999988886532 346789999998887764
No 18
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.54 E-value=0.0001 Score=47.44 Aligned_cols=56 Identities=9% Similarity=0.176 Sum_probs=42.3
Q ss_pred cccccccccchhHHHHHHhCCCEEEEecCcchhhhhhcCccccEEEEeecCCHHHH
Q psy3841 4 RFNHHGLNREEPGKKTNNINNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQI 59 (73)
Q Consensus 4 ~~~~~~ygtsi~sVr~V~ekgkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~~l 59 (73)
.+.+|+||++.+.+++++++|+.||+|..+.....++....-+++||+.|++.+.+
T Consensus 77 ~~~~~~~g~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 132 (207)
T 2j41_A 77 EYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHL 132 (207)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC----
T ss_pred eECCeecCCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHH
Confidence 45677899999999999999999999999888877765322468889987764443
No 19
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.35 E-value=0.00035 Score=46.79 Aligned_cols=57 Identities=14% Similarity=0.247 Sum_probs=48.7
Q ss_pred ccccccccchhHHHHHHhCCCEEEEecCcchhhhhhcCc--cccEEEEeecCCHHHHHH
Q psy3841 5 FNHHGLNREEPGKKTNNINNAHVILDVSLAGVERLHRQH--VYPIVLLIKFKSTKQIKE 61 (73)
Q Consensus 5 ~~~~~ygtsi~sVr~V~ekgkhCILdv~~~avk~L~~~~--l~PiVIfIkp~s~~~lke 61 (73)
|.+|.||++-+.++++++.++.+++|+.+++.++++..- .-|..+|+.+++...|.+
T Consensus 95 ~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde 153 (218)
T 1z6g_A 95 YANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLS 153 (218)
T ss_dssp ETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHH
T ss_pred cccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHH
Confidence 567899999899999999999999999999999887654 456899999988777664
No 20
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=87.01 E-value=0.77 Score=29.66 Aligned_cols=54 Identities=13% Similarity=0.236 Sum_probs=39.7
Q ss_pred cccccchhHHHHHHhCCCEEEEecCcchhhhhhcCccccEEEEeecCCHHHHHH
Q psy3841 8 HGLNREEPGKKTNNINNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKE 61 (73)
Q Consensus 8 ~~ygtsi~sVr~V~ekgkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~~lke 61 (73)
++||++.+.+++.++++..|++++....++.+.........+++..|+...|.|
T Consensus 96 ~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDe 149 (207)
T 1znw_A 96 HRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQA 149 (207)
T ss_dssp EEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHH
T ss_pred hhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHH
Confidence 678999889999999999999998887777665543344557776666554443
No 21
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=69.50 E-value=2.8 Score=28.95 Aligned_cols=51 Identities=10% Similarity=0.014 Sum_probs=33.6
Q ss_pred cccccc-chhHHHHHHhCCCEEEEecCcchhh---h----hhcCcccc-EEEEeecCCHH
Q psy3841 7 HHGLNR-EEPGKKTNNINNAHVILDVSLAGVE---R----LHRQHVYP-IVLLIKFKSTK 57 (73)
Q Consensus 7 ~~~ygt-si~sVr~V~ekgkhCILdv~~~avk---~----L~~~~l~P-iVIfIkp~s~~ 57 (73)
++.||| ....+++.+++|+.+|||...+... . ++...+.. +++|..|++..
T Consensus 92 ~~~~~~~~~~~v~~~l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~ 151 (287)
T 1gvn_B 92 TPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINS 151 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHH
Confidence 467888 4577888999999999999887654 2 23333222 34555666655
No 22
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=68.40 E-value=5.4 Score=24.54 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=25.7
Q ss_pred hHHHHHHhCCCEEEEecCcch------hhhhhcCcccc-EEEEeecCC
Q psy3841 15 PGKKTNNINNAHVILDVSLAG------VERLHRQHVYP-IVLLIKFKS 55 (73)
Q Consensus 15 ~sVr~V~ekgkhCILdv~~~a------vk~L~~~~l~P-iVIfIkp~s 55 (73)
+.++.++++|..+|+|-.... +..|......| .+|++..+.
T Consensus 68 ~~~~~~l~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~ 115 (193)
T 2rhm_A 68 HTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASG 115 (193)
T ss_dssp HHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCH
T ss_pred HHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCH
Confidence 456677889999999977632 22244333344 577887653
No 23
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=61.51 E-value=7.6 Score=24.07 Aligned_cols=39 Identities=10% Similarity=0.174 Sum_probs=27.8
Q ss_pred cchhHHHHHHhCCCEEEEecCcchhhhhhcCccccEEEEeecCCHHHHHHhhccc
Q psy3841 12 REEPGKKTNNINNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKENC 66 (73)
Q Consensus 12 tsi~sVr~V~ekgkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~~lke~r~~~ 66 (73)
||-+.|+++++.-| ..-+|.|+|++-.|...+.|....+
T Consensus 35 tssqdirdiiksmk----------------dngkplvvfvngasqndvnefqnea 73 (112)
T 2lnd_A 35 TSSQDIRDIIKSMK----------------DNGKPLVVFVNGASQNDVNEFQNEA 73 (112)
T ss_dssp CSHHHHHHHHHHHT----------------TCCSCEEEEECSCCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHH----------------hcCCeEEEEecCcccccHHHHHHHH
Confidence 78888888876422 2346888888888887777765544
No 24
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=56.11 E-value=8.4 Score=27.00 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=39.6
Q ss_pred ccccccchhHHHHHH-hCCCEEEEecCcchhhhhhcCccccEEEEeecCCHHHHHHh
Q psy3841 7 HHGLNREEPGKKTNN-INNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEI 62 (73)
Q Consensus 7 ~~~ygtsi~sVr~V~-ekgkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~~lke~ 62 (73)
-|.||.+...|-+.+ +.|-..+-..+.+....++...+-+-++++.+++.+.+++.
T Consensus 35 anaYG~~~~~i~~~l~~~G~~~~~vas~~E~~~~~~~G~~~~il~~~~~~~~~~~~~ 91 (361)
T 2dy3_A 35 ANAYNHGVEKVAPVIAAHGADAFGVATLAEAMQLRDIGISQEVLCWIWTPEQDFRAA 91 (361)
T ss_dssp HHHHHTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSEEEECCCCTTSCHHHH
T ss_pred ecCcCCCHHHHHHHHHHCCCCEEEEeEHHHHHHHHhcCCCCCEEEECCCCHHHHHHH
Confidence 367888877777765 66865666678888888888877755567776655556544
No 25
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=54.82 E-value=5.8 Score=28.19 Aligned_cols=54 Identities=9% Similarity=-0.024 Sum_probs=38.2
Q ss_pred cccccchhHHHHHH-hCCCEEEEecCcchhhhhhcCccccEEEEeecCCHHHHHH
Q psy3841 8 HGLNREEPGKKTNN-INNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKE 61 (73)
Q Consensus 8 ~~ygtsi~sVr~V~-ekgkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~~lke 61 (73)
|.||-....|-+.+ +.|...+-..+.+....++...+-+-++++.+++.+.++.
T Consensus 44 naYG~~~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~G~~~~Il~~g~~~~~~~~~ 98 (384)
T 1xfc_A 44 DGYGHGATRVAQTALGAGAAELGVATVDEALALRADGITAPVLAWLHPPGIDFGP 98 (384)
T ss_dssp HHHTTCHHHHHHHHHHTTCCEEEESCHHHHHHHHHTTCCSCEEECCCCTTCCCHH
T ss_pred CCcCCChHHHHHHHHHCCCCEEEEeEHHHHHHHHhcCCCCCEEEEcCCCHHHHHH
Confidence 67888877777765 6686667777888888888887764456777654444443
No 26
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=49.98 E-value=30 Score=21.07 Aligned_cols=46 Identities=9% Similarity=0.031 Sum_probs=26.0
Q ss_pred HHHHHHhCCCEEEEecCcchhhhhh---c-CccccEEEEeecCCHHHHHH
Q psy3841 16 GKKTNNINNAHVILDVSLAGVERLH---R-QHVYPIVLLIKFKSTKQIKE 61 (73)
Q Consensus 16 sVr~V~ekgkhCILdv~~~avk~L~---~-~~l~PiVIfIkp~s~~~lke 61 (73)
.|+..+++|+.+|+|-.|...+.+. . ....-.+|++..+....++.
T Consensus 80 ~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R 129 (196)
T 2c95_A 80 AMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQR 129 (196)
T ss_dssp HHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHH
T ss_pred HHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence 3444455789999997665443321 1 11123788888765444443
No 27
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Probab=48.88 E-value=16 Score=26.02 Aligned_cols=56 Identities=5% Similarity=-0.125 Sum_probs=40.0
Q ss_pred ccccccchhHHHHHH-hCCCEEEEecCcchhhhhhcCccc-cEEEEeecCCHHHHHHhh
Q psy3841 7 HHGLNREEPGKKTNN-INNAHVILDVSLAGVERLHRQHVY-PIVLLIKFKSTKQIKEIK 63 (73)
Q Consensus 7 ~~~ygtsi~sVr~V~-ekgkhCILdv~~~avk~L~~~~l~-PiVIfIkp~s~~~lke~r 63 (73)
-|.||.+...|-+.+ +.|...+-..+.+....++...+- ||+ ++.+.+.+.+++.-
T Consensus 41 anaYGhg~~~i~~~l~~~G~~~~~vas~~Ea~~l~~aG~~~~il-~~g~~~~~~~~~~~ 98 (380)
T 3co8_A 41 SNAYGHGLLQVSKIARECGVDGLAVSVLDEGIAIRQAGIDDFIL-ILGPIDVKYAPIAS 98 (380)
T ss_dssp HHHHTTCHHHHHHHHGGGTCCEEEESSHHHHHHHHHTTCCCCEE-ECSCCCGGGHHHHH
T ss_pred ecccCCCHHHHHHHHHHcCCCEEEEeeHHHHHHHHhcCCCCCEE-EECCCCHHHHHHHH
Confidence 367898877777755 668666767788888889888776 665 45666666666543
No 28
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=48.87 E-value=10 Score=26.58 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=37.2
Q ss_pred ccccccchhHHHHHHhCCCEEEEecCcchhhhhhcCccc-cEEEEeecCCHHHHHHh
Q psy3841 7 HHGLNREEPGKKTNNINNAHVILDVSLAGVERLHRQHVY-PIVLLIKFKSTKQIKEI 62 (73)
Q Consensus 7 ~~~ygtsi~sVr~V~ekgkhCILdv~~~avk~L~~~~l~-PiVIfIkp~s~~~lke~ 62 (73)
-|.||.+...|-+.+.+.-..+-..+.+....++...+- ||++++.+.+.+.+++.
T Consensus 34 anaYG~g~~~i~~~l~~~~~~~~va~~~Ea~~~~~~G~~~~Il~~~g~~~~~~~~~~ 90 (357)
T 1rcq_A 34 ADAYGHGAVRCAEALAAEADGFAVACIEEGLELREAGIRQPILLLEGFFEASELELI 90 (357)
T ss_dssp HHHHTTCHHHHHHHHTTTCSEEEESSHHHHHHHHHTTCCSCEEETTCCSSGGGHHHH
T ss_pred eccccCCHHHHHHHHHHhCCEEEEccHHHHHHHHhCCcCCCEEEEeCCCCHHHHHHH
Confidence 367998888888877554233444577778888877776 67656665555555544
No 29
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=48.72 E-value=34 Score=20.62 Aligned_cols=48 Identities=8% Similarity=0.043 Sum_probs=27.6
Q ss_pred hHHHHHHhC-CCEEEEecCc-------chhhhhhcCccccEEEEeecCCHHHHHHh
Q psy3841 15 PGKKTNNIN-NAHVILDVSL-------AGVERLHRQHVYPIVLLIKFKSTKQIKEI 62 (73)
Q Consensus 15 ~sVr~V~ek-gkhCILdv~~-------~avk~L~~~~l~PiVIfIkp~s~~~lke~ 62 (73)
+.++.+++. |..+|+|... ...+.++.......+|++..+....++.+
T Consensus 67 ~~i~~~l~~~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~ 122 (183)
T 2vli_A 67 DALQYASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERL 122 (183)
T ss_dssp HHHHHHHHHCSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHhCCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHH
Confidence 456677776 8888888654 23344554443344578876543444433
No 30
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=47.42 E-value=36 Score=20.49 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=17.4
Q ss_pred cccchhHHHHHHhCCCEEEEecCc
Q psy3841 10 LNREEPGKKTNNINNAHVILDVSL 33 (73)
Q Consensus 10 ygtsi~sVr~V~ekgkhCILdv~~ 33 (73)
|++-.+.+++.+++|..+|+|...
T Consensus 72 ~~~~~~~~~~~~~~g~~vi~~~~~ 95 (178)
T 1qhx_A 72 EGAWAEGVVAMARAGARIIIDDVF 95 (178)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHHhcCCeEEEEecc
Confidence 333345678888899999999853
No 31
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=47.28 E-value=45 Score=20.56 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=13.0
Q ss_pred hHHHHHHhCCCEEEEe
Q psy3841 15 PGKKTNNINNAHVILD 30 (73)
Q Consensus 15 ~sVr~V~ekgkhCILd 30 (73)
+.++..+++|..+|+|
T Consensus 84 ~~i~~~l~~~~~vi~d 99 (215)
T 1nn5_A 84 PLIKEKLSQGVTLVVD 99 (215)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHCCCEEEEe
Confidence 3567777889999999
No 32
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A
Probab=46.04 E-value=16 Score=26.17 Aligned_cols=56 Identities=9% Similarity=0.047 Sum_probs=39.5
Q ss_pred ccccccchhHHHHHH-hCCCEEEEecCcchhhhhhcCccc-cEEEEeecCCHHHHHHhh
Q psy3841 7 HHGLNREEPGKKTNN-INNAHVILDVSLAGVERLHRQHVY-PIVLLIKFKSTKQIKEIK 63 (73)
Q Consensus 7 ~~~ygtsi~sVr~V~-ekgkhCILdv~~~avk~L~~~~l~-PiVIfIkp~s~~~lke~r 63 (73)
-|.||.....|-+.+ +.|...+-..+.+....|+...+. ||+ ++.+++.+.++..-
T Consensus 40 AnaYG~g~~~v~~~l~~~G~~~f~vas~~Ea~~lr~aG~~~~Il-~~g~~~~~~~~~~~ 97 (388)
T 1bd0_A 40 ANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEAPIL-VLGASRPADAALAA 97 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSCEE-ECSCCCGGGHHHHH
T ss_pred ecccCCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhCCcCCCEE-EECCCCHHHHHHHH
Confidence 367898877777655 668666666788888889888776 454 56777666666543
No 33
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=45.77 E-value=20 Score=25.60 Aligned_cols=55 Identities=11% Similarity=0.013 Sum_probs=38.4
Q ss_pred ccccccchhHHHHHH-hCCCEEEEecCcchhhhhhcCcccc-EEEEeecCCHHHHHHh
Q psy3841 7 HHGLNREEPGKKTNN-INNAHVILDVSLAGVERLHRQHVYP-IVLLIKFKSTKQIKEI 62 (73)
Q Consensus 7 ~~~ygtsi~sVr~V~-ekgkhCILdv~~~avk~L~~~~l~P-iVIfIkp~s~~~lke~ 62 (73)
-|.||.....|-+.+ +.|...+-..+.+....|+...+.+ |+ ++.+.+.+.++..
T Consensus 44 anaYGhg~~~v~~~l~~~G~~~f~vas~~Ea~~lr~~G~~~~il-~~g~~~~~~~~~~ 100 (391)
T 2vd8_A 44 GNAYGHDYVPVAXIALEAGATRLAVAFLDEALVLRRAGITAPIL-VLGPSPPRDINVA 100 (391)
T ss_dssp HHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSCEE-ECSCCCGGGHHHH
T ss_pred ecccCCChHHHHHHHHHcCCCeEEeecHHHHHHHHhcCCCCceE-EecCCChHHHHHH
Confidence 367888877777654 6686666667888888888887764 55 4566665666544
No 34
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=44.59 E-value=9.9 Score=27.15 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=36.0
Q ss_pred ccccccchhHHHHHHhCCCEEEEecCcchhhhhhcCccc-cEEEEeecCCHHHHHHh
Q psy3841 7 HHGLNREEPGKKTNNINNAHVILDVSLAGVERLHRQHVY-PIVLLIKFKSTKQIKEI 62 (73)
Q Consensus 7 ~~~ygtsi~sVr~V~ekgkhCILdv~~~avk~L~~~~l~-PiVIfIkp~s~~~lke~ 62 (73)
-|.||.....|-+.+.+ -..+-..+.+....|+...+- ||++++.+...+.+++.
T Consensus 55 anaYGhg~~~v~~~l~~-~~~~~va~~~Ea~~lr~~G~~~~Il~~~g~~~~~~~~~~ 110 (379)
T 2rjg_A 55 ANAYGHGLLETARTLPD-ADAFGVARLEEALRLRAGGITKPVLLLEGFFDARDLPTI 110 (379)
T ss_dssp HHHHTTCHHHHHHHCTT-CSEEEESSHHHHHHHHHTTCCSCEEETTCCSCGGGHHHH
T ss_pred ecccCCCHHHHHHHHHh-CCEEEEeEHHHHHHHHhCCcCCCEEEEECCCCHHHHHHH
Confidence 36788888888888776 444445567777778777665 67656554454555443
No 35
>3mgd_A Predicted acetyltransferase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; HET: ACO; 1.90A {Clostridium acetobutylicum}
Probab=44.05 E-value=14 Score=20.95 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=28.9
Q ss_pred Cccccccccccch-hHHH-HHHhCCCE-EEEecCcchhhhhhcCcccc
Q psy3841 2 RPRFNHHGLNREE-PGKK-TNNINNAH-VILDVSLAGVERLHRQHVYP 46 (73)
Q Consensus 2 ~~~~~~~~ygtsi-~sVr-~V~ekgkh-CILdv~~~avk~L~~~~l~P 46 (73)
.|.|.+.++|+.+ +.+. ...+.|.. +.|++++.+++-..+..|.+
T Consensus 93 ~p~~rg~Gig~~Ll~~~~~~~~~~g~~~i~l~~n~~a~~~y~k~GF~~ 140 (157)
T 3mgd_A 93 EPTSRGNGIATGMLDRLVNEAKERNIHKICLVASKLGRPVYKKYGFQD 140 (157)
T ss_dssp CGGGTTSSHHHHHHHHHHHHHHHTTCCCEEECCCTTHHHHHHHHTCCC
T ss_pred cHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEeCcccHHHHHHcCCee
Confidence 4678899999764 2233 33334444 77888888877776666544
No 36
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=43.86 E-value=20 Score=18.16 Aligned_cols=21 Identities=5% Similarity=-0.154 Sum_probs=16.4
Q ss_pred ccccccccc-cchhHHHHHHhC
Q psy3841 3 PRFNHHGLN-REEPGKKTNNIN 23 (73)
Q Consensus 3 ~~~~~~~yg-tsi~sVr~V~ek 23 (73)
|+|.|++.- |+++..|.|+++
T Consensus 12 D~yGDSY~rd~t~~eLk~il~~ 33 (37)
T 1ik9_C 12 DCYGDSYFIDTDLNQLKEVFSG 33 (37)
T ss_dssp CTTSCBSSSCCCHHHHHHHHHT
T ss_pred ccccccccCcCCHHHHHHHHHH
Confidence 677777765 788999998875
No 37
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=43.73 E-value=12 Score=26.72 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=26.2
Q ss_pred hHHHHHHhCCCEEEEecCcch----hhhhh------cCccccEEEEee
Q psy3841 15 PGKKTNNINNAHVILDVSLAG----VERLH------RQHVYPIVLLIK 52 (73)
Q Consensus 15 ~sVr~V~ekgkhCILdv~~~a----vk~L~------~~~l~PiVIfIk 52 (73)
+.=+.|.++|+||+|-|+|-- -++|+ ...|--+.|++.
T Consensus 20 ~~C~~I~~~g~HallGISpgNsyFs~d~L~~Li~Wa~~~F~~vdVli~ 67 (257)
T 3oqi_A 20 QNCNEILKRRRHVLVGISPFNSRFSEDYIHRLIAWAVREFQSVSVLLA 67 (257)
T ss_dssp HHHHHHHHHTCEEEEEECTTSTTCCHHHHHHHHHHHHHHCSEEEEEEC
T ss_pred hhHHHHHhCCCeEEEEeCCCCcccCHHHHHHHHHHHHccCCceEEEeC
Confidence 456889999999999998842 22222 455666666664
No 38
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis}
Probab=43.27 E-value=27 Score=25.10 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=39.0
Q ss_pred ccccccchhHH-HHHHhCCCEEEEecCcchhhhhhcCccc-cEEEEeecCCHHHHHHh
Q psy3841 7 HHGLNREEPGK-KTNNINNAHVILDVSLAGVERLHRQHVY-PIVLLIKFKSTKQIKEI 62 (73)
Q Consensus 7 ~~~ygtsi~sV-r~V~ekgkhCILdv~~~avk~L~~~~l~-PiVIfIkp~s~~~lke~ 62 (73)
-|.||-....| +...+.|...+-..+.+....|+...+- |++ ++.+...+++++.
T Consensus 39 anaYGhg~~~va~~l~~~G~~~f~va~~~Ea~~lr~~G~~~~il-vlg~~~~~~~~~~ 95 (374)
T 4ecl_A 39 AEAYGHGMYEVTTYLEQIGVSSFAVATIDEGIRLRKYGISSEIL-ILGYTSPSRAKEL 95 (374)
T ss_dssp HHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSEEE-ECSCCCGGGHHHH
T ss_pred cCccCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHhcCCCCCEE-EEeCCCHHHHHHH
Confidence 46799877777 5556778777777888888889888775 554 4566665666544
No 39
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=42.23 E-value=53 Score=21.06 Aligned_cols=48 Identities=13% Similarity=0.007 Sum_probs=29.8
Q ss_pred HHHHHHhC--CCEEEEecCcch---hhhhh----cCcccc-EEEEeecCCHHHHHHhh
Q psy3841 16 GKKTNNIN--NAHVILDVSLAG---VERLH----RQHVYP-IVLLIKFKSTKQIKEIK 63 (73)
Q Consensus 16 sVr~V~ek--gkhCILdv~~~a---vk~L~----~~~l~P-iVIfIkp~s~~~lke~r 63 (73)
.|++.+++ |+.+|+|-.|.. ++.|. ...+.| .||++..+....++.+.
T Consensus 67 ~i~~~l~~~~g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~ 124 (223)
T 2xb4_A 67 MVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIM 124 (223)
T ss_dssp HHHHHHHHHCTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHH
T ss_pred HHHHHHhcccCCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHH
Confidence 46666777 999999965543 23332 223445 78888876655555543
No 40
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=40.40 E-value=24 Score=25.45 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=38.4
Q ss_pred ccccccchhHH-HHHHhCCCEEEEecCcchhhhhhcCccc-cEEEEeecCCHHHHHHh
Q psy3841 7 HHGLNREEPGK-KTNNINNAHVILDVSLAGVERLHRQHVY-PIVLLIKFKSTKQIKEI 62 (73)
Q Consensus 7 ~~~ygtsi~sV-r~V~ekgkhCILdv~~~avk~L~~~~l~-PiVIfIkp~s~~~lke~ 62 (73)
-|.||-....| +...+.|...+-..+.+....|+...+- ||++ +.+...+.++..
T Consensus 41 anaYGhg~~~va~~l~~~G~~~f~va~~~Ea~~lr~~G~~~~Ilv-lg~~~~~~~~~~ 97 (371)
T 3e5p_A 41 ANGYGHGAVESAKAAKKGGATGFCVALLDEAIELREAGVQDPILI-LSVVDLAYVPLL 97 (371)
T ss_dssp HHHHTTCHHHHHHHHHHTTCCCEEESSHHHHHHHHTTTCCSCEEE-EEECCGGGHHHH
T ss_pred cccccCCHHHHHHHHHHcCCCEEEEEeHHHHHHHHhcCCCCCEEE-EcCCCHHHHHHH
Confidence 46788777777 6667788777777788888888888776 6654 455555555433
No 41
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=39.72 E-value=51 Score=19.58 Aligned_cols=49 Identities=10% Similarity=-0.166 Sum_probs=28.3
Q ss_pred hhHHHHHH---hCCCEEEEecCcch---hhhhh----cCccccEEEEeecCCHHHHHHh
Q psy3841 14 EPGKKTNN---INNAHVILDVSLAG---VERLH----RQHVYPIVLLIKFKSTKQIKEI 62 (73)
Q Consensus 14 i~sVr~V~---ekgkhCILdv~~~a---vk~L~----~~~l~PiVIfIkp~s~~~lke~ 62 (73)
.+.+++.+ ++|+.+|+|-.+.. .+.+. ...+-..+||+..+...-++.+
T Consensus 65 ~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~ 123 (181)
T 1ly1_A 65 FDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRN 123 (181)
T ss_dssp HHHHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHH
T ss_pred HHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHH
Confidence 35567777 78999999976543 22232 1222236888886543334433
No 42
>3i3g_A N-acetyltransferase; malaria, structural genomics, structural genomics consortium, SGC,; 1.86A {Trypanosoma brucei} PDB: 3fb3_A
Probab=39.41 E-value=30 Score=19.74 Aligned_cols=48 Identities=17% Similarity=0.105 Sum_probs=31.9
Q ss_pred Cccccccccccch-hHHHHHH-hCC-CEEEEecCcchhhhhhcCccccEEE
Q psy3841 2 RPRFNHHGLNREE-PGKKTNN-INN-AHVILDVSLAGVERLHRQHVYPIVL 49 (73)
Q Consensus 2 ~~~~~~~~ygtsi-~sVr~V~-ekg-khCILdv~~~avk~L~~~~l~PiVI 49 (73)
.|.|.+.++|+.+ +.+.+.+ ++| ..+.|++.+.+++-..+..|.+.=.
T Consensus 105 ~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~~~~~n~~~y~k~GF~~~~~ 155 (161)
T 3i3g_A 105 DPSYRGAGLGKALIMDLCEISRSKGCYKVILDSSEKSLPFYEKLGFRAHER 155 (161)
T ss_dssp CGGGTTTTHHHHHHHHHHHHHHHTTCSEEEEEECTTTHHHHHHTTCEEEEE
T ss_pred cHHHcccCHHHHHHHHHHHHHHHcCCcEEEEEecccchhHHHhcCCeecCc
Confidence 4788999999864 3333333 334 5688888888877777777766543
No 43
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=38.80 E-value=20 Score=25.45 Aligned_cols=55 Identities=5% Similarity=-0.047 Sum_probs=36.8
Q ss_pred ccccccchhHHHHHH-hCCCEEEEecCcchhhhhhcCccccEEEEeecCCHHHHHH
Q psy3841 7 HHGLNREEPGKKTNN-INNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKE 61 (73)
Q Consensus 7 ~~~ygtsi~sVr~V~-ekgkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~~lke 61 (73)
-|.||.....|-+.+ +.|...+-..+.+....++...+-+-++++.+...+.+++
T Consensus 39 anaYGhg~~~i~~~l~~~G~~~f~vas~~Ea~~~~~~G~~~~il~~~~~~~~~~~~ 94 (386)
T 1vfs_A 39 SNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAGIQGRIMCWLWTPGGPWRE 94 (386)
T ss_dssp HHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSEEEECCCCTTCCHHH
T ss_pred ecccCCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhcCCCCCEEEECCCCHHHHHH
Confidence 367888877777654 6686666667888888888887764344566544444443
No 44
>3s6f_A Hypothetical acetyltransferase; acyl-COA N-acyltransferases, structural genomics, joint CENT structural genomics, JCSG; HET: MSE COA; 1.19A {Deinococcus radiodurans}
Probab=38.58 E-value=24 Score=20.38 Aligned_cols=45 Identities=18% Similarity=-0.014 Sum_probs=33.2
Q ss_pred Cccccccccccch-hHHHHHHhCCCEEEEecCcchhhhhhcCcccc
Q psy3841 2 RPRFNHHGLNREE-PGKKTNNINNAHVILDVSLAGVERLHRQHVYP 46 (73)
Q Consensus 2 ~~~~~~~~ygtsi-~sVr~V~ekgkhCILdv~~~avk~L~~~~l~P 46 (73)
.|.|.+.++|+.+ +.+.+.+.....+.|..++.|.+-..+..|.+
T Consensus 82 ~p~~rg~GiG~~Ll~~~~~~~~~~~~~~l~~~~~a~~fY~k~GF~~ 127 (145)
T 3s6f_A 82 QAGWRSLGLGSELMRRVLTELGDLYMVDLSCDDDVVPFYERLGLKR 127 (145)
T ss_dssp CTTSCSSSHHHHHHHHHHHHHCSCSEEECCCCGGGHHHHHHTTCCC
T ss_pred CHHHhcCcHHHHHHHHHHHHhcCCCeEEEEECHHHHHHHHHCCCEE
Confidence 4778999999875 55555565556677888888888777777665
No 45
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=38.19 E-value=65 Score=19.34 Aligned_cols=42 Identities=10% Similarity=-0.059 Sum_probs=24.2
Q ss_pred HHhCCCEEEEecCc---chhhhhhcCcccc-EEEEeecCCHHHHHHh
Q psy3841 20 NNINNAHVILDVSL---AGVERLHRQHVYP-IVLLIKFKSTKQIKEI 62 (73)
Q Consensus 20 V~ekgkhCILdv~~---~avk~L~~~~l~P-iVIfIkp~s~~~lke~ 62 (73)
.+++|..+|+|.+. ...+.++... .+ .+|++..+....++.+
T Consensus 76 ~~~~~~~~vi~~~~~~~~~~~~l~~~~-~~~~vv~l~~~~e~~~~R~ 121 (175)
T 1knq_A 76 MQRTNKVSLIVCSALKKHYRDLLREGN-PNLSFIYLKGDFDVIESRL 121 (175)
T ss_dssp HHHHCSEEEEECCCCSHHHHHHHHTTC-TTEEEEEEECCHHHHHHHH
T ss_pred HHhcCCcEEEEeCchHHHHHHHHHhcC-CCEEEEEEECCHHHHHHHH
Confidence 34568899999753 2233444322 23 7889987554444433
No 46
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=37.18 E-value=70 Score=19.48 Aligned_cols=47 Identities=19% Similarity=0.089 Sum_probs=27.1
Q ss_pred HHHHHhCCCEEEEecCcch--------------hhhhhcC-ccccEEEEeecCCHHHHHHhh
Q psy3841 17 KKTNNINNAHVILDVSLAG--------------VERLHRQ-HVYPIVLLIKFKSTKQIKEIK 63 (73)
Q Consensus 17 Vr~V~ekgkhCILdv~~~a--------------vk~L~~~-~l~PiVIfIkp~s~~~lke~r 63 (73)
|+..+++|..+|+|-.+.. ++.+... .-...+|++..+....++.+.
T Consensus 79 i~~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~ 140 (213)
T 2plr_A 79 ILPMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIK 140 (213)
T ss_dssp HHHHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHH
T ss_pred HHHHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHh
Confidence 3455678999999975533 2333221 113368888876545555443
No 47
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A
Probab=36.59 E-value=41 Score=24.38 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=38.9
Q ss_pred ccccccchhHH-HHHHhCCCEEEEecCcchhhhhhcCccccEEEEeecCCHHHHHHh
Q psy3841 7 HHGLNREEPGK-KTNNINNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEI 62 (73)
Q Consensus 7 ~~~ygtsi~sV-r~V~ekgkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~~lke~ 62 (73)
-|.||-....| +...+.|...+-..+.+....|+...+-+-++++.+...+++++.
T Consensus 40 AnaYGhg~~~va~~l~~~G~~~f~Va~~~Ea~~lr~aGi~~~ilvlg~~~~~~~~~~ 96 (382)
T 4a3q_A 40 ANAYGLGSVKVARHLMENGATFFAVATLDEAIELRMHGITAKILVLGVLPAKDIDKA 96 (382)
T ss_dssp HHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHTTTCCSEEEECSCCCGGGHHHH
T ss_pred eccccCCHHHHHHHHHHCCCCEEEEeEHHHHHHHHhCCCCCCEEEEeCCCHHHHHHH
Confidence 46788776666 667778887787888888888988877543445566655555544
No 48
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=34.96 E-value=78 Score=19.31 Aligned_cols=18 Identities=11% Similarity=-0.036 Sum_probs=13.5
Q ss_pred hHHHHHHhCCCEEEEecC
Q psy3841 15 PGKKTNNINNAHVILDVS 32 (73)
Q Consensus 15 ~sVr~V~ekgkhCILdv~ 32 (73)
+.|+..+.+|..+|+|=.
T Consensus 77 ~~i~~~l~~~~~vi~Dr~ 94 (204)
T 2v54_A 77 SFIQEQLEQGITLIVDRY 94 (204)
T ss_dssp HHHHHHHHTTCEEEEESC
T ss_pred HHHHHHHHCCCEEEEECc
Confidence 456667788999999943
No 49
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=34.86 E-value=34 Score=24.61 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=30.7
Q ss_pred cccchhHHHHHHhCCCEEEEecCcchh-------hhhhcCccccEEEEeecCCHHHHH
Q psy3841 10 LNREEPGKKTNNINNAHVILDVSLAGV-------ERLHRQHVYPIVLLIKFKSTKQIK 60 (73)
Q Consensus 10 ygtsi~sVr~V~ekgkhCILdv~~~av-------k~L~~~~l~PiVIfIkp~s~~~lk 60 (73)
|++-.+.+++.+++|+.+|+|...... +.++.......+|++.+ +.+.+.
T Consensus 295 ~~~~~~~~~~~l~~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~-~~e~l~ 351 (416)
T 3zvl_A 295 WQRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCA-TIEQAR 351 (416)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECC-CHHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeC-CHHHHH
Confidence 666777888889999999999663221 12223333345677755 444443
No 50
>1cjw_A Protein (serotonin N-acetyltransferase); HET: COT; 1.80A {Ovis aries} SCOP: d.108.1.1 PDB: 1b6b_A
Probab=33.06 E-value=63 Score=17.98 Aligned_cols=47 Identities=15% Similarity=-0.040 Sum_probs=32.5
Q ss_pred Cccccccccccch-hHHHHHHhC--C-CEEEEecCcchhhhhhcCccccEE
Q psy3841 2 RPRFNHHGLNREE-PGKKTNNIN--N-AHVILDVSLAGVERLHRQHVYPIV 48 (73)
Q Consensus 2 ~~~~~~~~ygtsi-~sVr~V~ek--g-khCILdv~~~avk~L~~~~l~PiV 48 (73)
.|.|.+.++|+.+ +.+.+.+.+ | ..++|.-++.|++-..+..|.+.-
T Consensus 98 ~p~~rg~Gig~~ll~~~~~~~~~~~g~~~i~l~~n~~a~~~y~k~GF~~~~ 148 (166)
T 1cjw_A 98 HRSFRQQGKGSVLLWRYLHHVGAQPAVRRAVLMCEDALVPFYQRFGFHPAG 148 (166)
T ss_dssp CTTSTTSSHHHHHHHHHHHHHHTSTTCCEEEEEECGGGHHHHHTTTEEEEE
T ss_pred CHhhccCChHHHHHHHHHHHHHHhcCcceEEEecCchHHHHHHHcCCeECC
Confidence 5789999999874 444454543 4 345667788888888888776653
No 51
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=32.79 E-value=56 Score=18.90 Aligned_cols=45 Identities=11% Similarity=-0.003 Sum_probs=28.2
Q ss_pred cccccccccchhHHHHHHhC-CCEEE-EecCcchhhhhhcCccccEEEEee
Q psy3841 4 RFNHHGLNREEPGKKTNNIN-NAHVI-LDVSLAGVERLHRQHVYPIVLLIK 52 (73)
Q Consensus 4 ~~~~~~ygtsi~sVr~V~ek-gkhCI-Ldv~~~avk~L~~~~l~PiVIfIk 52 (73)
.+..+.-|+|...+.+.+++ |-.+- +..+.+.+..+ . .|.|++++
T Consensus 31 ~~~~~~~g~s~~~l~~~a~~~Gl~~~~~~~~~~~L~~l---~-lP~I~~~~ 77 (129)
T 3b79_A 31 GLPLSDGKLTPFLLPRAAERAGLVAKENRAELEKISSL---I-LPAILVLK 77 (129)
T ss_dssp TCCCBTTBCCTTTHHHHHHHHTEEEEEEECCGGGSCGG---G-CSEEEEEG
T ss_pred cCCCcCCCCCHHHHHHHHHHCCCeEEEEECCHHHCCcC---C-CCEEEEEc
Confidence 34444568999999999887 55443 34444444433 2 68887774
No 52
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=32.44 E-value=20 Score=21.48 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=28.1
Q ss_pred CCccccccccccchhHHHHHHhCCCEEEEecC
Q psy3841 1 MRPRFNHHGLNREEPGKKTNNINNAHVILDVS 32 (73)
Q Consensus 1 ~~~~~~~~~ygtsi~sVr~V~ekgkhCILdv~ 32 (73)
|+|.=.+|-|.|.+..++.-+++|..+=+.+.
T Consensus 7 l~p~Id~hD~~~K~k~a~~FL~~GdKVKvti~ 38 (89)
T 1i96_V 7 FRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIM 38 (89)
T ss_pred ecCCcCcchHHHHHHHHHHHHHCCCEEEEEEE
Confidence 57778899999999999999999988877764
No 53
>3oqv_A ALBC; rossman fold, cyclodipeptide synthase, aminoacyl-tRNA, prote binding; 1.90A {Streptomyces noursei}
Probab=31.97 E-value=12 Score=26.59 Aligned_cols=38 Identities=8% Similarity=0.056 Sum_probs=19.3
Q ss_pred hHHHHHHhCCCEEEEecCcch----hhhhh------cCccccEEEEee
Q psy3841 15 PGKKTNNINNAHVILDVSLAG----VERLH------RQHVYPIVLLIK 52 (73)
Q Consensus 15 ~sVr~V~ekgkhCILdv~~~a----vk~L~------~~~l~PiVIfIk 52 (73)
+.=+.|.++|+||+|-|+|-- -++|. ..+|--+.|++.
T Consensus 20 ~~C~~i~~~g~HallGVSpgNsyFs~drl~~li~Wa~~~F~~vdVli~ 67 (247)
T 3oqv_A 20 DRSRLIRQRGEHALIGISAGNSYFSQKNTVMLLQWAGQRFERTDVVYV 67 (247)
T ss_dssp --------CEEEEEEEEESSCTTCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhHHHHHhCCCeEEEEeCCCCcccCHHHHHHHHHHHHccCCceEEEeC
Confidence 345789999999999998742 22222 345666666664
No 54
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA: acyl carrier protein TRAN (MCAT), FABD; 1.46A {Staphylococcus aureus}
Probab=31.64 E-value=40 Score=23.30 Aligned_cols=49 Identities=8% Similarity=-0.002 Sum_probs=30.3
Q ss_pred hHHHHHHhCCCEEEEecCcchhhhhhcCccccEEEEeecCCHHHHHHhh
Q psy3841 15 PGKKTNNINNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIK 63 (73)
Q Consensus 15 ~sVr~V~ekgkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~~lke~r 63 (73)
++|+.+.+.|...+++++|..+=.--..++.+-+=.+...+.+.+++..
T Consensus 265 ~~v~~l~~~g~~~~vEiGP~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (316)
T 3im9_A 265 NSTEWLIDQGVDHFIEIGPGKVLSGLIKKINRDVKLTSIQTLEDVKGWN 313 (316)
T ss_dssp HHHHHHHHTTEEEEEEESSSCHHHHHHHHHCSSSEEEEECSHHHHHHHC
T ss_pred HHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhCCCCeEecCCHHHHHHhh
Confidence 6888999999999999999854321112222222233445666666553
No 55
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=30.25 E-value=38 Score=23.61 Aligned_cols=50 Identities=4% Similarity=-0.070 Sum_probs=31.1
Q ss_pred hHHHHHHhCCCEEEEecCcchhhhhhcCccccEEEEeecCCHHHHHHhhc
Q psy3841 15 PGKKTNNINNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKE 64 (73)
Q Consensus 15 ~sVr~V~ekgkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~~lke~r~ 64 (73)
++|+.+.+.|-..+++++|..+=.--..++.|-+-.+...+.+.++.+.+
T Consensus 265 ~~v~~l~~~g~~~fvEiGP~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (318)
T 3ezo_A 265 ECVQHIAREGVTHVIECGPGKVLAGLTKRIDGNLVGASVFDPASLDEALK 314 (318)
T ss_dssp HHHHHHHHTTCCEEEEESSSSHHHHHHHHHCTTSEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEeCCcHHHHHHHHHHhCCCceEecCCHHHHHHHHH
Confidence 67888999999999999998643322222233223334456666665543
No 56
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=29.30 E-value=67 Score=21.26 Aligned_cols=43 Identities=7% Similarity=-0.044 Sum_probs=26.5
Q ss_pred hHHHHHHhCCCEEEEecCcc-hhhhhhc-----CccccEEEEeecCCHHH
Q psy3841 15 PGKKTNNINNAHVILDVSLA-GVERLHR-----QHVYPIVLLIKFKSTKQ 58 (73)
Q Consensus 15 ~sVr~V~ekgkhCILdv~~~-avk~L~~-----~~l~PiVIfIkp~s~~~ 58 (73)
+++ +++++|+.+||+-... .++.+.. ..+-..+||+.++..+.
T Consensus 82 ~~i-~~~~~g~~vIl~gg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~ 130 (253)
T 2ze6_A 82 FEV-DWRKSEEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRLRLGDSDA 130 (253)
T ss_dssp HHH-HTTTTSSEEEEEECCHHHHHHHHHCTTTTSSCEEEEEECCCCCHHH
T ss_pred HHH-HHHhCCCCeEEeccHHHHHHHHHhcccccccCceEEEEecchhHHH
Confidence 445 5567899999986542 2333322 23445789999988343
No 57
>2fiw_A GCN5-related N-acetyltransferase:aminotransferase II; alpha-beta-alpha sandwich, GCN4-related acetyltransferase, S genomics, PSI; HET: ACO; 2.35A {Rhodopseudomonas palustris} SCOP: d.108.1.1
Probab=29.11 E-value=74 Score=18.07 Aligned_cols=45 Identities=9% Similarity=0.046 Sum_probs=31.3
Q ss_pred Cccccccccccch-hHHHHHHhC-C-CEEEEecCcchhhhhhcCcccc
Q psy3841 2 RPRFNHHGLNREE-PGKKTNNIN-N-AHVILDVSLAGVERLHRQHVYP 46 (73)
Q Consensus 2 ~~~~~~~~ygtsi-~sVr~V~ek-g-khCILdv~~~avk~L~~~~l~P 46 (73)
.|.|.+.+||+.+ +.+.+.+.+ | ..+.|+++..+++-+.+..|.+
T Consensus 91 ~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~n~~a~~~y~k~GF~~ 138 (172)
T 2fiw_A 91 HPDYVGRDVGTTLIDALEKLAGARGALILTVDASDNAAEFFAKRGYVA 138 (172)
T ss_dssp CGGGCSSSHHHHHHHHHHHHHHTTTCSEEEEEECTTTHHHHHTTTCEE
T ss_pred CccccCcCHHHHHHHHHHHHHHhcCCcEEEEEeCHHHHHHHHHcCCEE
Confidence 5789999999864 444444443 4 4567888888888777776654
No 58
>1q2y_A Protein YJCF, similar to hypothetical proteins; GCN5-related N-acetyltransferase superfamily fold, NYSGXRC, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: d.108.1.1
Probab=28.37 E-value=42 Score=18.99 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=30.3
Q ss_pred Cccccccccccch-hHHHHHH-hCC-CEEEEecCcchhhhhhcCcccc
Q psy3841 2 RPRFNHHGLNREE-PGKKTNN-INN-AHVILDVSLAGVERLHRQHVYP 46 (73)
Q Consensus 2 ~~~~~~~~ygtsi-~sVr~V~-ekg-khCILdv~~~avk~L~~~~l~P 46 (73)
.|.|.+.++|+.+ +.+.+.+ +.| ..+.|++++.+.+-..+..+.+
T Consensus 74 ~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~n~~~~~~y~~~Gf~~ 121 (140)
T 1q2y_A 74 LKSHRSAGVGGIIMKALEKAAADGGASGFILNAQTQAVPFYKKHGYRV 121 (140)
T ss_dssp CGGGTTTTHHHHHHHHHHHHHHHTTCCSEEEEEEGGGHHHHHHTTCEE
T ss_pred cHHHhccCHHHHHHHHHHHHHHHCCCcEEEEEecHHHHHHHHHCCCEE
Confidence 5788999999875 4444444 344 4567788887877777666554
No 59
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=27.35 E-value=62 Score=21.41 Aligned_cols=38 Identities=11% Similarity=0.227 Sum_probs=29.0
Q ss_pred CCEEEEecCcchhhhhhcCccccEEEEeecCCHHHHHHhhcccc
Q psy3841 24 NAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKENCR 67 (73)
Q Consensus 24 gkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~~lke~r~~~~ 67 (73)
.--|++.|+.+.- .=.|+|+-+.+-+.+++.++.++.+
T Consensus 119 dl~clM~I~~~~~------~~~pVV~~l~d~s~~~l~~L~kRl~ 156 (157)
T 3mxn_A 119 DLCCLMTISFNPS------LSKAMVLALQDVNMEHLENLKKRLN 156 (157)
T ss_dssp HCEEEEEEEEETT------TTEEEEEEEECCCHHHHHHHHHHTT
T ss_pred hhccEEEEEEcCC------CCCCEEEEecCCCHHHHHHHHHHhc
Confidence 4457777766543 2379999999999999999987753
No 60
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=27.12 E-value=10 Score=23.35 Aligned_cols=14 Identities=29% Similarity=0.195 Sum_probs=7.6
Q ss_pred HHHHHhCCCEEEEe
Q psy3841 17 KKTNNINNAHVILD 30 (73)
Q Consensus 17 Vr~V~ekgkhCILd 30 (73)
|+..+++|..+++|
T Consensus 75 i~~~l~~g~~vi~d 88 (197)
T 2z0h_A 75 IKQYLSEGYAVLLD 88 (197)
T ss_dssp HTTC----CEEEEE
T ss_pred HHHHHhCCCEEEEC
Confidence 44456679999999
No 61
>3sf4_D Protein inscuteable homolog; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=26.40 E-value=59 Score=17.84 Aligned_cols=34 Identities=6% Similarity=-0.000 Sum_probs=24.6
Q ss_pred cchhHHHHHHhC-------CCEEEEecCcchhhhhhcCccc
Q psy3841 12 REEPGKKTNNIN-------NAHVILDVSLAGVERLHRQHVY 45 (73)
Q Consensus 12 tsi~sVr~V~ek-------gkhCILdv~~~avk~L~~~~l~ 45 (73)
+-++||+.-+|- .++|||.-.|=.++.=-+.++.
T Consensus 6 ~qvDSVqrWmeDLr~MTe~ECMcvLQ~Kpi~~eed~qgeli 46 (52)
T 3sf4_D 6 MQVDSVQRWMEDLKLMTECECMCVLQAKPISLEEDAQGDLI 46 (52)
T ss_dssp -CCHHHHHHHHHHTTCCCCCCSEEEECCCCCCCGGGCCCEE
T ss_pred chhHHHHHHHHHHHhhhhceEEEEeecCccCccccccccee
Confidence 568899988874 7899999888777664444443
No 62
>3efa_A Putative acetyltransferase; structural genom 2, protein structure initiative, midwest center for structu genomics, MCSG; 2.42A {Lactobacillus plantarum WCFS1}
Probab=26.30 E-value=68 Score=18.08 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=31.2
Q ss_pred Cccccccccccch-hHHHHHHh-CCC-EEEEecCcchhhhhhcCccccE
Q psy3841 2 RPRFNHHGLNREE-PGKKTNNI-NNA-HVILDVSLAGVERLHRQHVYPI 47 (73)
Q Consensus 2 ~~~~~~~~ygtsi-~sVr~V~e-kgk-hCILdv~~~avk~L~~~~l~Pi 47 (73)
.|.|.+.++|+.+ +.+.+.+. +|. .+.|+++..+.+-..+..|.+.
T Consensus 80 ~p~~rg~Gig~~Ll~~~~~~~~~~g~~~i~l~~~~~a~~~y~~~Gf~~~ 128 (147)
T 3efa_A 80 RKAYRGHGWGRQLLTAAEEWATQRGFTHGEIHGELTAQRFYELCGYRVT 128 (147)
T ss_dssp CGGGTTSSHHHHHHHHHHHHHHHTTCCEEEEEEEGGGHHHHHHTTCEEE
T ss_pred cHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeccHHHHHHHHHcCCccc
Confidence 4788999999864 34444433 344 5778888888887777776654
No 63
>2jdc_A Glyphosate N-acetyltransferase; GNAT; HET: CAO; 1.6A {Bacillus licheniformis} SCOP: d.108.1.1 PDB: 2bsw_A* 2jdd_A*
Probab=25.98 E-value=73 Score=17.99 Aligned_cols=49 Identities=0% Similarity=-0.155 Sum_probs=33.8
Q ss_pred Cccccccccccch-hHHHHHHh-CC-CEEEEecCcchhhhhhcCccccEEEE
Q psy3841 2 RPRFNHHGLNREE-PGKKTNNI-NN-AHVILDVSLAGVERLHRQHVYPIVLL 50 (73)
Q Consensus 2 ~~~~~~~~ygtsi-~sVr~V~e-kg-khCILdv~~~avk~L~~~~l~PiVIf 50 (73)
.|.|.+.++|+.+ +.+.+.+. .| +.+.|+++..+.+-..+..|.+.-..
T Consensus 78 ~p~~rg~Gig~~Ll~~~~~~~~~~g~~~i~l~~~~~a~~~y~~~GF~~~~~~ 129 (146)
T 2jdc_A 78 LEGYREQKAGSSLIKHAEEILRKRGADLLWCNARTSASGYYKKLGFSEQGEV 129 (146)
T ss_dssp CTTSTTSSHHHHHHHHHHHHHHHTTCCEEEEEEEGGGHHHHHHTTCEEEEEE
T ss_pred CHHHcccCHHHHHHHHHHHHHHHcCCcEEEEEccccHHHHHHHcCCEEeccc
Confidence 4778999999874 44444443 44 45678888888888888887766443
No 64
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty acid/phospholipid metabolism, transferase; HET: MSE; 1.50A {Coxiella burnetii}
Probab=25.61 E-value=63 Score=22.34 Aligned_cols=49 Identities=8% Similarity=-0.041 Sum_probs=30.6
Q ss_pred hHHHHHHhCCCEEEEecCcchhhhhhcCccccEEEEeecCCHHHHHHhh
Q psy3841 15 PGKKTNNINNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIK 63 (73)
Q Consensus 15 ~sVr~V~ekgkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~~lke~r 63 (73)
++|+.+.+.|-..+++++|..+=.=-..++.|-+-.+...+.+.+..+.
T Consensus 263 ~~i~~l~~~g~~~fvEiGP~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (316)
T 3tqe_A 263 ETIKYIEEQGIKVFMECGPDNKLAGLIKRIDRQSEILPLTTTELILTAI 311 (316)
T ss_dssp HHHHHHHHTTCCEEEECSSSSHHHHHHHHHCTTCEEEECSSHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEECCcHHHHHHHHHhcCCCCeEecCCHHHHHHHH
Confidence 6788899999999999999754322122233333344455666665543
No 65
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=24.93 E-value=1.3e+02 Score=19.58 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=24.9
Q ss_pred HHHHHhCCCEEEEecCcchh-------hhhhcCccccEEEEeecC
Q psy3841 17 KKTNNINNAHVILDVSLAGV-------ERLHRQHVYPIVLLIKFK 54 (73)
Q Consensus 17 Vr~V~ekgkhCILdv~~~av-------k~L~~~~l~PiVIfIkp~ 54 (73)
++..+++|..+|+|-.+... +.++...+...++++..+
T Consensus 102 ~~~~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~ 146 (253)
T 2p5t_B 102 VTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATK 146 (253)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred HHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence 34556778899999776543 345566666666677653
No 66
>1tig_A IF3-C, translation initiation factor 3; IF3 C-terminal domain, ribosome binding factor; 2.00A {Geobacillus stearothermophilus} SCOP: d.68.1.1
Probab=24.63 E-value=21 Score=21.59 Aligned_cols=33 Identities=12% Similarity=0.224 Sum_probs=28.3
Q ss_pred CCccccccccccchhHHHHHHhCCCEEEEecCc
Q psy3841 1 MRPRFNHHGLNREEPGKKTNNINNAHVILDVSL 33 (73)
Q Consensus 1 ~~~~~~~~~ygtsi~sVr~V~ekgkhCILdv~~ 33 (73)
|+|.=.+|-|.|.+..++.-+++|..+=+.+..
T Consensus 12 l~p~Id~hD~~~K~k~a~~FL~~GdKVKvti~f 44 (94)
T 1tig_A 12 LSPTIEEHDFNTKLRNARKFLEKGDKVKATIRF 44 (94)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred ecCCcCcchHHHHHHHHHHHHHCCCEEEEEEEE
Confidence 467778999999999999999999988777643
No 67
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=24.59 E-value=20 Score=23.41 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=20.0
Q ss_pred ccccccccccchhHHHHHHhCCCEEEEecCcchhh
Q psy3841 3 PRFNHHGLNREEPGKKTNNINNAHVILDVSLAGVE 37 (73)
Q Consensus 3 ~~~~~~~ygtsi~sVr~V~ekgkhCILdv~~~avk 37 (73)
|-|.+|+.++..++..+-.+....+++|++...+.
T Consensus 8 ~~~~~~~~~~p~~~~~~~~~~~~~vviD~ETTGl~ 42 (224)
T 2f96_A 8 DEFDGSLPSGPRHPMARRFRGYLPVVVDVETGGFN 42 (224)
T ss_dssp -----------CCHHHHHTTTEEEEEEEEEESSSC
T ss_pred ccccccCCCCCCChhhccccCCcEEEEEeeCCCCC
Confidence 56889999999999988888889999999766543
No 68
>3gz7_A Putative antibiotic biosynthesis monooxygenase; NP_888398.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 2.15A {Bordetella bronchiseptica}
Probab=24.29 E-value=18 Score=21.76 Aligned_cols=8 Identities=0% Similarity=-0.164 Sum_probs=2.2
Q ss_pred cccccccc
Q psy3841 6 NHHGLNRE 13 (73)
Q Consensus 6 ~~~~ygts 13 (73)
.+||||||
T Consensus 12 ~~~~~~~~ 19 (115)
T 3gz7_A 12 HENLYFQG 19 (115)
T ss_dssp -----CCS
T ss_pred ccccccce
Confidence 47888876
No 69
>3t90_A Glucose-6-phosphate acetyltransferase 1; GNAT fold, glcnac biosynthesis, alpha/beta protein; HET: EPE; 1.50A {Arabidopsis thaliana}
Probab=24.27 E-value=64 Score=17.80 Aligned_cols=45 Identities=18% Similarity=0.102 Sum_probs=28.1
Q ss_pred Cccccccccccch-hHHHHHH-hCC-CEEEEecCcchhhhhhcCcccc
Q psy3841 2 RPRFNHHGLNREE-PGKKTNN-INN-AHVILDVSLAGVERLHRQHVYP 46 (73)
Q Consensus 2 ~~~~~~~~ygtsi-~sVr~V~-ekg-khCILdv~~~avk~L~~~~l~P 46 (73)
.|.|.+.++|+.+ +.+.+.+ +.| ..+.|++.+...+-..+..|.+
T Consensus 92 ~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~~y~k~GF~~ 139 (149)
T 3t90_A 92 DSRFRGKQLGKKVVEFLMDHCKSMGCYKVILDCSVENKVFYEKCGMSN 139 (149)
T ss_dssp CGGGTTSSHHHHHHHHHHHHHHHTTCSEEECCCCGGGHHHHHTTTCCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCCCeEEEEeccccHHHHHHHCCCee
Confidence 4788999999764 3333333 335 4677788877775555555543
No 70
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=23.92 E-value=43 Score=19.34 Aligned_cols=34 Identities=9% Similarity=-0.037 Sum_probs=28.0
Q ss_pred cccccccchhHHHHHHhCCCEEEEecCcchhhhhhc
Q psy3841 6 NHHGLNREEPGKKTNNINNAHVILDVSLAGVERLHR 41 (73)
Q Consensus 6 ~~~~ygtsi~sVr~V~ekgkhCILdv~~~avk~L~~ 41 (73)
.||.-|-+.++|+.+++++- +-.++..+.+.|..
T Consensus 5 r~~~~~ip~~~I~Riar~~G--v~rIs~da~~~l~~ 38 (84)
T 2hue_C 5 RDNIQGITKPAIRRLARRGG--VKRISGLIYEETRG 38 (84)
T ss_dssp GGGCCSSCHHHHHHHHHHTT--CCEECTTHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHcC--chhccHHHHHHHHH
Confidence 46777889999999999874 46789999888864
No 71
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural genomics center for infectious disease, S bartonella, CAT-scratch disease; 1.60A {Bartonella henselae}
Probab=23.67 E-value=67 Score=22.21 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=19.4
Q ss_pred hHHHHHHhCCCEEEEecCcchh
Q psy3841 15 PGKKTNNINNAHVILDVSLAGV 36 (73)
Q Consensus 15 ~sVr~V~ekgkhCILdv~~~av 36 (73)
++|+.+.+.|-..+++++|..+
T Consensus 265 ~~v~~l~~~g~~~fvEiGP~~~ 286 (318)
T 3qat_A 265 ETIEWISANGVNTLFEIGSGKV 286 (318)
T ss_dssp HHHHHHHHTTEEEEEEESSCSH
T ss_pred HHHHHHHhCCCCEEEEECCchH
Confidence 6788999999999999999864
No 72
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=23.11 E-value=19 Score=21.97 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=7.8
Q ss_pred ccccccccchhHHH
Q psy3841 5 FNHHGLNREEPGKK 18 (73)
Q Consensus 5 ~~~~~ygtsi~sVr 18 (73)
|.+++|+||++.|=
T Consensus 26 f~~~G~~~t~~~IA 39 (196)
T 2qwt_A 26 FAAEGLGVPMDEIA 39 (196)
T ss_dssp HHHTCTTSCHHHHH
T ss_pred HHhcCCCCCHHHHH
Confidence 55666666544443
No 73
>1kux_A Aralkylamine, serotonin N-acetyltransferase; enzyme-inhibitor complex, bisubstrate analog, alternate conformations; HET: CA3; 1.80A {Ovis aries} SCOP: d.108.1.1 PDB: 1kuv_A* 1kuy_A* 1l0c_A* 1ib1_E*
Probab=22.76 E-value=1e+02 Score=18.36 Aligned_cols=46 Identities=15% Similarity=-0.017 Sum_probs=31.5
Q ss_pred Cccccccccccch-hHHHHHHhC--C-CEEEEecCcchhhhhhcCccccE
Q psy3841 2 RPRFNHHGLNREE-PGKKTNNIN--N-AHVILDVSLAGVERLHRQHVYPI 47 (73)
Q Consensus 2 ~~~~~~~~ygtsi-~sVr~V~ek--g-khCILdv~~~avk~L~~~~l~Pi 47 (73)
.|.|.+.++|+.+ +.+.+.+.+ | +.++|..+..+++-..+..|.+.
T Consensus 127 ~p~~rg~Gig~~Ll~~~~~~~~~~~g~~~i~l~~n~~a~~~y~k~GF~~~ 176 (207)
T 1kux_A 127 HRSFRQQGKGSVLLWRYLHHVGAQPAVRRAVLMCEDALVPFYQRFGFHPA 176 (207)
T ss_dssp CGGGCSSSHHHHHHHHHHHHHTTSTTCCEEEEEECGGGHHHHHTTTCEEE
T ss_pred CHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEeecHHHHHHHHHCCCEEC
Confidence 4788999999863 444454443 3 35667778888888777776655
No 74
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=22.75 E-value=16 Score=22.12 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=6.5
Q ss_pred ccccccccchhHH
Q psy3841 5 FNHHGLNREEPGK 17 (73)
Q Consensus 5 ~~~~~ygtsi~sV 17 (73)
|.+++|+||++.|
T Consensus 29 f~~~G~~~s~~~I 41 (199)
T 2rek_A 29 VARHGADASLEEI 41 (199)
T ss_dssp HHHHGGGCCHHHH
T ss_pred HHhcCCCCCHHHH
Confidence 4556665544433
No 75
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=22.43 E-value=66 Score=18.89 Aligned_cols=29 Identities=7% Similarity=-0.127 Sum_probs=19.3
Q ss_pred cccccccccchhHHHHHHh----CCCEEEEecC
Q psy3841 4 RFNHHGLNREEPGKKTNNI----NNAHVILDVS 32 (73)
Q Consensus 4 ~~~~~~ygtsi~sVr~V~e----kgkhCILdv~ 32 (73)
|+++.++-.+.+.+++.++ ..+..|||++
T Consensus 25 ~~~G~L~f~~a~~~~~~l~~~~~~~~~vvlDls 57 (130)
T 4dgh_A 25 ALEGPFFFAAAETFERVMGSIQETPQILILRLK 57 (130)
T ss_dssp ECCSSCCHHHHHHHHHHHHHSSSCCSEEEEECT
T ss_pred EEeeeEeehhHHHHHHHHHHhccCCCEEEEECC
Confidence 4566676666677766654 2577888875
No 76
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=22.42 E-value=70 Score=18.06 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=17.8
Q ss_pred cchhHHHHHHhCCCEEEEecCcc
Q psy3841 12 REEPGKKTNNINNAHVILDVSLA 34 (73)
Q Consensus 12 tsi~sVr~V~ekgkhCILdv~~~ 34 (73)
.|.+.+++.++++...||||.+.
T Consensus 7 i~~~~l~~~~~~~~~~liDvR~~ 29 (108)
T 1gmx_A 7 INVADAHQKLQEKEAVLVDIRDP 29 (108)
T ss_dssp ECHHHHHHHHHTTCCEEEECSCH
T ss_pred cCHHHHHHHHhCCCCEEEEcCCH
Confidence 36677788888878899999653
No 77
>2g3a_A Acetyltransferase; structural genomics, PSI, protein structu initiative, midwest center for structural genomics, MCSG; 1.90A {Agrobacterium tumefaciens str} SCOP: d.108.1.1
Probab=22.30 E-value=76 Score=17.92 Aligned_cols=48 Identities=8% Similarity=0.050 Sum_probs=31.1
Q ss_pred Cccccccccccch-hHHHHHH-hCC-CEEEEec-CcchhhhhhcCccccEEE
Q psy3841 2 RPRFNHHGLNREE-PGKKTNN-INN-AHVILDV-SLAGVERLHRQHVYPIVL 49 (73)
Q Consensus 2 ~~~~~~~~ygtsi-~sVr~V~-ekg-khCILdv-~~~avk~L~~~~l~PiVI 49 (73)
.|.|.+.+||+.+ +.+.+.+ +.| +.+.|++ ++.+.+-+.+..|.+.=.
T Consensus 84 ~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~n~~a~~~y~k~GF~~~~~ 135 (152)
T 2g3a_A 84 PEAMRGQGIAPKLLAMAEEEARKRGCMGAYIDTMNPDALRTYERYGFTKIGS 135 (152)
T ss_dssp CGGGCSSSHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHHHTCEEEEE
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCccHHHHHHHCCCEEeee
Confidence 5789999999864 3333333 345 4566777 466777777777766543
No 78
>1cl8_A Protein (endonuclease); endonuclease/DNA, DNA base analog, protein/DNA complex; HET: DNA PRN; 1.80A {Escherichia coli} SCOP: c.52.1.1 PDB: 1ckq_A* 1eri_A* 1qc9_A 2oxv_A* 1qps_A 1qrh_A 1qri_A
Probab=21.89 E-value=54 Score=23.62 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=17.8
Q ss_pred cCcchhhhhh-----------cCccccEEEEeec
Q psy3841 31 VSLAGVERLH-----------RQHVYPIVLLIKF 53 (73)
Q Consensus 31 v~~~avk~L~-----------~~~l~PiVIfIkp 53 (73)
-.++|++|++ .-.++|||+|.--
T Consensus 137 aaGNAIER~~KNi~ei~n~Ml~E~~fPyV~Fl~G 170 (276)
T 1cl8_A 137 AAGNAIERSHKNISEIANFMLSESHFPYVLFLEG 170 (276)
T ss_dssp CCCCGGGGHHHHHHHHHHHTTTCSBCCEEEEEES
T ss_pred hhhhHHHHhhccHHHHHHHHHhcCCCceEEEecc
Confidence 4678999977 3458999999853
No 79
>1mty_G Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.23.3.1 PDB: 1mmo_G 1xmg_E 1xmf_E 1xmh_E 1xvb_E 1fyz_E 1fz0_E 1fz2_E 1fz3_E 1fz4_E 1fz5_E 1fz6_E 1fz7_E 1fz8_E 1fz9_E 1fzh_E 1fzi_E 1xu3_E 1xu5_E 1fz1_E ...
Probab=21.72 E-value=40 Score=22.59 Aligned_cols=14 Identities=7% Similarity=-0.064 Sum_probs=12.2
Q ss_pred cccccccchhHHHH
Q psy3841 6 NHHGLNREEPGKKT 19 (73)
Q Consensus 6 ~~~~ygtsi~sVr~ 19 (73)
|-++||||++-.|+
T Consensus 141 n~dYy~~pLeeLRk 154 (162)
T 1mty_G 141 NLNYYDTPLEELRK 154 (162)
T ss_dssp TTTTTCSCHHHHHH
T ss_pred CcchhcCcHHHHHH
Confidence 56899999999886
No 80
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=21.72 E-value=1.5e+02 Score=18.28 Aligned_cols=50 Identities=18% Similarity=0.078 Sum_probs=29.9
Q ss_pred HHHHHHhC---CCEEEEecCcchhhh---hh----cCcccc-EEEEeecCCHHHHHHhhcc
Q psy3841 16 GKKTNNIN---NAHVILDVSLAGVER---LH----RQHVYP-IVLLIKFKSTKQIKEIKEN 65 (73)
Q Consensus 16 sVr~V~ek---gkhCILdv~~~avk~---L~----~~~l~P-iVIfIkp~s~~~lke~r~~ 65 (73)
.+.+.+.+ |+.+|||-.|..++. +. .....| .||++..+....++.+..+
T Consensus 67 ~~~~~l~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 67 IVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp HHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred HHHHHHhcccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 34444443 788999966555432 22 122335 7899988776666655544
No 81
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=21.62 E-value=59 Score=18.59 Aligned_cols=21 Identities=29% Similarity=0.216 Sum_probs=16.2
Q ss_pred chhHHHHHHhCCC-EEEEecCc
Q psy3841 13 EEPGKKTNNINNA-HVILDVSL 33 (73)
Q Consensus 13 si~sVr~V~ekgk-hCILdv~~ 33 (73)
|.+.+++.++++. ..|+||..
T Consensus 4 s~~el~~~l~~~~~~~liDvR~ 25 (127)
T 3i2v_A 4 SVTDYKRLLDSGAFHLLLDVRP 25 (127)
T ss_dssp CHHHHHHHHHHTCCCEEEECSC
T ss_pred CHHHHHHHHhCCCCeEEEECCC
Confidence 5667788888774 89999964
No 82
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=21.50 E-value=18 Score=22.12 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=5.4
Q ss_pred cccccc-ccchhHH
Q psy3841 5 FNHHGL-NREEPGK 17 (73)
Q Consensus 5 ~~~~~y-gtsi~sV 17 (73)
|.+++| |||++.|
T Consensus 25 f~~~Gy~~ts~~~I 38 (205)
T 1rkt_A 25 FKRKGFELTTMKDV 38 (205)
T ss_dssp HHHHCSTTCCHHHH
T ss_pred HHHcCcccCCHHHH
Confidence 334444 3444333
No 83
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD, xanthomonas oryzae PV. ORYZ KACC10331, transferase; 1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A*
Probab=21.45 E-value=79 Score=21.79 Aligned_cols=49 Identities=4% Similarity=-0.154 Sum_probs=30.1
Q ss_pred hHHHHHHhCCCEEEEecCcchhhhhhcCccccEEEEeecCCHHHHHHhh
Q psy3841 15 PGKKTNNINNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIK 63 (73)
Q Consensus 15 ~sVr~V~ekgkhCILdv~~~avk~L~~~~l~PiVIfIkp~s~~~lke~r 63 (73)
++|+.+.+.|-..+++++|..+=.=--.++.|-+-.+...+.+.++...
T Consensus 261 ~~i~~l~~~g~~~fvEiGP~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (314)
T 3k89_A 261 GCVQALASQGITRIAECGPGKVLSGLIKRIDKSLDARPLATPADYAGAL 309 (314)
T ss_dssp HHHHHHHHTTCCEEEECSSSSHHHHHHHHHCTTSEEEECSSHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEeCCcHHHHHHHHHhhccCCeEecCCHHHHHHHH
Confidence 6788899999999999999874321112223322233445666665543
No 84
>2q0y_A GCN5-related N-acetyltransferase; YP_295895.1, acetyltransferase (GNAT) family, structural genomics, joint center for ST genomics; HET: MSE; 1.80A {Ralstonia eutropha JMP134}
Probab=21.32 E-value=72 Score=18.29 Aligned_cols=45 Identities=13% Similarity=0.179 Sum_probs=29.8
Q ss_pred Cccccccccccch-hHHHHHH-hCCC-EEEEecCcchhhhhhcCcccc
Q psy3841 2 RPRFNHHGLNREE-PGKKTNN-INNA-HVILDVSLAGVERLHRQHVYP 46 (73)
Q Consensus 2 ~~~~~~~~ygtsi-~sVr~V~-ekgk-hCILdv~~~avk~L~~~~l~P 46 (73)
.|.|.+.++|+.+ +.+.+.+ ++|. .+.|+++..|+.-..+..|.+
T Consensus 96 ~p~~rg~GiG~~Ll~~~~~~a~~~g~~~i~L~~~~~A~~fY~k~GF~~ 143 (153)
T 2q0y_A 96 DPSHRERGIGQALMNRAEAEFAERGIAFAVLHATEMGQPLYARMGWSP 143 (153)
T ss_dssp CGGGCSSSHHHHHHHHHHHHHHHTTCCCEEECCCTTTHHHHHHTTCCC
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEeCHHHHHHHHHcCCcc
Confidence 4778899999875 4444444 4554 477888877776666655544
No 85
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=21.30 E-value=19 Score=21.84 Aligned_cols=15 Identities=7% Similarity=0.084 Sum_probs=8.0
Q ss_pred cccccc-ccchhHHHH
Q psy3841 5 FNHHGL-NREEPGKKT 19 (73)
Q Consensus 5 ~~~~~y-gtsi~sVr~ 19 (73)
|.++|| |||++.|=+
T Consensus 20 f~~~G~~~~s~~~IA~ 35 (178)
T 4hku_A 20 IYEKGMEKTTLYDIAS 35 (178)
T ss_dssp HHHHCGGGCCHHHHHH
T ss_pred HHHhCcccccHHHHHH
Confidence 455666 466554443
No 86
>2yb5_A FUSC, putative fusidic acid resistance protein; translation, antibiotic resistance, zinc finger; 2.10A {Staphylococcus aureus}
Probab=21.16 E-value=19 Score=24.95 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=20.5
Q ss_pred CccccEEEEeecCCHHHHHHhhcc
Q psy3841 42 QHVYPIVLLIKFKSTKQIKEIKEN 65 (73)
Q Consensus 42 ~~l~PiVIfIkp~s~~~lke~r~~ 65 (73)
.+|.|||+-++|.+.++|+.+-.+
T Consensus 78 ~~Lk~yV~pm~~lTe~qIrk~F~K 101 (215)
T 2yb5_A 78 NELKVYIQDFEIPSSSQLEKIFRK 101 (215)
T ss_dssp HHHGGGBCCCCCCCHHHHHHHTTT
T ss_pred HHHHHHhccCCCCCHHHHHHHhhh
Confidence 468999999999999999977554
No 87
>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: d.115.1.1
Probab=20.76 E-value=1.5e+02 Score=19.04 Aligned_cols=48 Identities=17% Similarity=0.087 Sum_probs=30.6
Q ss_pred chhHHHHHHhCCCEEEEec-----------Ccchhhhhh----cCccccEEEEeecCCHHHHHHh
Q psy3841 13 EEPGKKTNNINNAHVILDV-----------SLAGVERLH----RQHVYPIVLLIKFKSTKQIKEI 62 (73)
Q Consensus 13 si~sVr~V~ekgkhCILdv-----------~~~avk~L~----~~~l~PiVIfIkp~s~~~lke~ 62 (73)
.++.+-+.+++|+..++-- +++|+++|. +..-+|.++.+. +.+++++.
T Consensus 9 ~i~~a~~~L~~G~iva~ptdt~ygL~~da~~~~av~rl~~~K~R~~~kPl~v~~~--~~~~~~~~ 71 (188)
T 1hru_A 9 AIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAA--NYEQLKPY 71 (188)
T ss_dssp HHHHHHHHHHTTCCEEEECSSSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEES--SHHHHGGG
T ss_pred HHHHHHHHHHCCCEEEEeCCCEeeeEEcCCCHHHHHHHHHHcCCCCCCCEEEEeC--CHHHHHHH
Confidence 3556667777887666432 568888875 234789888865 45555543
No 88
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=20.63 E-value=79 Score=21.79 Aligned_cols=22 Identities=9% Similarity=0.034 Sum_probs=19.2
Q ss_pred hHHHHHHhCCCEEEEecCcchh
Q psy3841 15 PGKKTNNINNAHVILDVSLAGV 36 (73)
Q Consensus 15 ~sVr~V~ekgkhCILdv~~~av 36 (73)
++|+...+.|-..+++++|..+
T Consensus 252 ~~v~~l~~~g~~~~vEiGP~~~ 273 (305)
T 2cuy_A 252 EILRDMEARGVKRFLEFGSGEV 273 (305)
T ss_dssp HHHHHHHHTTCCEEEEESSCSH
T ss_pred HHHHHHHhCCCCEEEEeCCcHH
Confidence 6788888999999999999864
No 89
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=20.55 E-value=82 Score=19.32 Aligned_cols=39 Identities=10% Similarity=0.055 Sum_probs=30.5
Q ss_pred ccccccchhHHHHHHhCCCEEEEe--cCcchhhhhhcCccccEE
Q psy3841 7 HHGLNREEPGKKTNNINNAHVILD--VSLAGVERLHRQHVYPIV 48 (73)
Q Consensus 7 ~~~ygtsi~sVr~V~ekgkhCILd--v~~~avk~L~~~~l~PiV 48 (73)
++..| +..+.+.++|.-.|+- +++.+.+.|....+.||.
T Consensus 62 ~~g~g---~~a~~L~~~gv~vVI~g~IG~~a~~~L~~~GI~v~~ 102 (136)
T 1o13_A 62 DHVHG---AVPNFVKEKGAELVIVRGIGRRAIAAFEAMGVKVIK 102 (136)
T ss_dssp TTCCS---CHHHHHHHTTCSEEECSCCCHHHHHHHHHTTCEEEC
T ss_pred CCCCC---HHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCEEEe
Confidence 34445 5566777788888876 789999999999999884
No 90
>1mhy_G Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} SCOP: a.23.3.1 PDB: 1mhz_G
Probab=20.50 E-value=44 Score=22.54 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=12.7
Q ss_pred cccccccchhHHHHH
Q psy3841 6 NHHGLNREEPGKKTN 20 (73)
Q Consensus 6 ~~~~ygtsi~sVr~V 20 (73)
|-++||||++-.|+-
T Consensus 145 n~dYy~~pLeeLRk~ 159 (169)
T 1mhy_G 145 NTDYYGTPLEGLRKE 159 (169)
T ss_dssp TTTTTSSCHHHHHHH
T ss_pred CcchhcCcHHHHHHH
Confidence 568999999998873
No 91
>2pw8_I Lepirudin, hirudin variant-1; thrombin, sulfotyrosine, hydrolase; HET: TYS; 1.84A {Hirudo medicinalis} PDB: 1hrt_I 2hir_A 5hir_A 4hir_A 6hir_A 3htc_I 4htc_I* 2joo_A 1hic_A
Probab=20.39 E-value=26 Score=20.10 Aligned_cols=15 Identities=13% Similarity=-0.084 Sum_probs=11.6
Q ss_pred HHhCCCEEEEecCcc
Q psy3841 20 NNINNAHVILDVSLA 34 (73)
Q Consensus 20 V~ekgkhCILdv~~~ 34 (73)
|..+|++|+||-+..
T Consensus 21 vCG~G~~C~~~ssgk 35 (65)
T 2pw8_I 21 VCGQGNKCILGSDGE 35 (65)
T ss_dssp EECTTEEEECCCTTC
T ss_pred eecCCceeeecCCCC
Confidence 345799999998763
No 92
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=20.15 E-value=20 Score=21.90 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=6.8
Q ss_pred cccccc-ccchhHHHH
Q psy3841 5 FNHHGL-NREEPGKKT 19 (73)
Q Consensus 5 ~~~~~y-gtsi~sVr~ 19 (73)
|.+++| |||++.|=+
T Consensus 20 f~~~G~~~ts~~~IA~ 35 (197)
T 2gen_A 20 FSEHGVDATTIEMIRD 35 (197)
T ss_dssp HHHHCTTTCCHHHHHH
T ss_pred HHHcCcccCCHHHHHH
Confidence 444555 455444433
No 93
>2g18_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha sandwich; 2.50A {Anabaena SP}
Probab=20.14 E-value=40 Score=23.58 Aligned_cols=16 Identities=6% Similarity=0.166 Sum_probs=12.9
Q ss_pred cccEEEEeecCCHHHH
Q psy3841 44 VYPIVLLIKFKSTKQI 59 (73)
Q Consensus 44 l~PiVIfIkp~s~~~l 59 (73)
|=|+++|++|.+.+..
T Consensus 163 FSp~~lf~Rp~~~ee~ 178 (253)
T 2g18_A 163 FSDFCIFVRPSSPEEE 178 (253)
T ss_dssp SCTTCEEECCCSHHHH
T ss_pred cCcceEEeccCchHHH
Confidence 3589999999888764
No 94
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=20.08 E-value=21 Score=21.38 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=6.4
Q ss_pred cccccc-ccchhHHH
Q psy3841 5 FNHHGL-NREEPGKK 18 (73)
Q Consensus 5 ~~~~~y-gtsi~sVr 18 (73)
|.+++| |||++.|=
T Consensus 15 f~~~Gy~~~s~~~Ia 29 (179)
T 2eh3_A 15 FFEKGYQGTSVEEIV 29 (179)
T ss_dssp HHHHCSTTCCHHHHH
T ss_pred HHHcCCccCCHHHHH
Confidence 444555 35544443
Done!