RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3841
         (73 letters)



>gnl|CDD|214504 smart00072, GuKc, Guanylate kinase homologues.  Active enzymes
           catalyze ATP-dependent phosphorylation of GMP to GDP.
           Structure resembles that of adenylate kinase. So-called
           membrane-associated guanylate kinase homologues (MAGUKs)
           do not possess guanylate kinase activities; instead at
           least some possess protein-binding functions.
          Length = 174

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 12/40 (30%), Positives = 24/40 (60%)

Query: 22  INNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKE 61
               H +LD+   GV++L +  +YPIV+ I   S+++++ 
Sbjct: 81  EKGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELER 120


>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase. 
          Length = 183

 Score = 29.6 bits (67), Expect = 0.091
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 22  INNAHVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEI 62
            +    ILDV + GV++L +  + PI + IK  S K ++  
Sbjct: 91  ESGKICILDVDIQGVKQLRKAELSPISVFIKPPSLKVLQRR 131


>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
          Length = 396

 Score = 24.8 bits (54), Expect = 5.3
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 6/26 (23%)

Query: 42  QHVYPIVLLIKFKSTKQIKEIKENCR 67
           QH   I      K+ +QI+ ++E CR
Sbjct: 132 QHSVEI------KTPEQIQRMRETCR 151


>gnl|CDD|236727 PRK10625, tas, putative aldo-keto reductase; Provisional.
          Length = 346

 Score = 24.4 bits (53), Expect = 5.9
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 21  NINNAHVILDVS-LAGVERLHRQHVYP 46
           NI + H+ L    LA +E +H+ + YP
Sbjct: 318 NIESLHLTLSEEVLAEIEAVHQVYTYP 344


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0738    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,680,423
Number of extensions: 271723
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 5
Length of query: 73
Length of database: 10,937,602
Length adjustment: 43
Effective length of query: 30
Effective length of database: 9,030,380
Effective search space: 270911400
Effective search space used: 270911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)