RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3841
(73 letters)
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 44.1 bits (103), Expect = 5e-07
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 26 HVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEN 65
H +LDV+ V+RL+ YPIV+ + S + +K ++
Sbjct: 283 HALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMR 322
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 43.7 bits (102), Expect = 6e-07
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 26 HVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIK 63
H ILDVS V RL H++PI + I+ +S + + EI
Sbjct: 622 HCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEIN 659
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 43.3 bits (101), Expect = 8e-07
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 26 HVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKEN 65
H +LDV+ V+RL+ YPIV+ + S + +K ++
Sbjct: 291 HALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMR 330
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 41.7 bits (97), Expect = 3e-06
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 26 HVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKENCR 67
H +LDV+ + +ERL+ YPIV+ +S +K +++
Sbjct: 200 HALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQWLA 241
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 39.0 bits (91), Expect = 3e-05
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 26 HVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKE 61
H ILDVS V RL H++PI + I+ +S + + E
Sbjct: 196 HCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE 231
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 35.5 bits (82), Expect = 4e-04
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 26 HVILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKE 61
H ILDVS ++RL +YP+ + IK KS + E
Sbjct: 191 HCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVME 226
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.11
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 38 RLHRQHVYPIVLLI--KFKSTKQIKEIKENCRFYVT 71
RL + Y LL+ ++ K +C+ +T
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 0.31
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 20/74 (27%)
Query: 1 MRPRFNHHGLNR--EEPGKKTN------NINNAH---VILDVSLAGVERLHRQHVYPIVL 49
+ F+ L E GK+T N N + V AG + + +
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA-----AG----DLRALDTVTN 1867
Query: 50 LIKFKSTKQIKEIK 63
++ F ++I I+
Sbjct: 1868 VLNFIKLQKIDIIE 1881
>3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure
initiative, structural genomics, midwest for structural
genomics (MCSG); 1.90A {Shigella flexneri 2a str}
Length = 382
Score = 25.4 bits (56), Expect = 1.8
Identities = 5/38 (13%), Positives = 17/38 (44%)
Query: 27 VILDVSLAGVERLHRQHVYPIVLLIKFKSTKQIKEIKE 64
DV+ ++ L+ +H Y + ++ + + + +
Sbjct: 28 TFADVNQVVLDALNARHSYQVHVVGETEQVDTVSGVNA 65
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 2.1
Identities = 4/14 (28%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Query: 57 KQ-IKEIKENCRFY 69
KQ +K+++ + + Y
Sbjct: 19 KQALKKLQASLKLY 32
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase,
hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP:
b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19
d.315.1.1
Length = 1151
Score = 23.4 bits (51), Expect = 8.6
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 11/37 (29%)
Query: 39 LHRQHV---------YP--IVLLIKFKSTKQIKEIKE 64
L +QH +P I ++ +F+S K+ +I
Sbjct: 664 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILA 700
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.411
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,119,134
Number of extensions: 50062
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 12
Length of query: 73
Length of database: 6,701,793
Length adjustment: 43
Effective length of query: 30
Effective length of database: 5,501,190
Effective search space: 165035700
Effective search space used: 165035700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)