Query psy3842
Match_columns 139
No_of_seqs 173 out of 1603
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 18:49:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3842.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3842hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1034 NuoG NADH dehydrogenas 100.0 7.4E-32 1.6E-36 229.1 10.2 134 1-134 67-265 (693)
2 PRK09130 NADH dehydrogenase su 100.0 7.4E-31 1.6E-35 225.0 9.3 119 1-119 68-236 (687)
3 TIGR01973 NuoG NADH-quinone ox 100.0 9.6E-30 2.1E-34 215.6 9.4 119 1-119 65-233 (603)
4 PRK07860 NADH dehydrogenase su 100.0 2.4E-29 5.1E-34 218.7 9.5 119 1-119 70-241 (797)
5 PRK09129 NADH dehydrogenase su 100.0 2.5E-29 5.4E-34 218.1 9.6 119 1-119 67-235 (776)
6 PRK08166 NADH dehydrogenase su 100.0 1.5E-28 3.2E-33 215.0 9.1 119 1-119 72-241 (847)
7 PRK08493 NADH dehydrogenase su 100.0 2E-28 4.3E-33 212.2 8.3 119 1-119 65-255 (819)
8 PTZ00305 NADH:ubiquinone oxido 99.9 3.9E-25 8.4E-30 171.1 9.3 58 1-58 135-192 (297)
9 COG3383 Uncharacterized anaero 99.9 6.1E-25 1.3E-29 185.6 7.2 122 1-122 69-284 (978)
10 KOG2282|consensus 99.9 9.7E-25 2.1E-29 178.1 5.2 133 1-133 98-295 (708)
11 PRK07569 bidirectional hydroge 99.8 3.2E-21 7E-26 146.9 7.3 58 1-58 69-126 (234)
12 PF10588 NADH-G_4Fe-4S_3: NADH 99.7 3.8E-18 8.2E-23 96.6 2.9 41 17-57 1-41 (41)
13 PF10588 NADH-G_4Fe-4S_3: NADH 99.1 2.1E-11 4.6E-16 68.9 0.1 40 92-131 2-41 (41)
14 COG1034 NuoG NADH dehydrogenas 99.0 2.8E-11 6.1E-16 103.9 -0.1 89 39-134 32-126 (693)
15 PTZ00305 NADH:ubiquinone oxido 99.0 6.1E-11 1.3E-15 92.4 0.5 89 39-134 100-194 (297)
16 PRK09130 NADH dehydrogenase su 98.9 4.9E-10 1.1E-14 96.9 0.8 88 40-134 33-127 (687)
17 TIGR01973 NuoG NADH-quinone ox 98.7 5.2E-09 1.1E-13 89.3 2.6 103 19-134 15-124 (603)
18 PRK09129 NADH dehydrogenase su 98.7 7.1E-09 1.5E-13 90.8 2.2 103 19-134 18-126 (776)
19 PRK08764 ferredoxin; Provision 98.6 6.9E-08 1.5E-12 67.9 5.6 71 22-94 32-104 (135)
20 PRK07860 NADH dehydrogenase su 98.6 8.8E-09 1.9E-13 90.5 0.5 87 40-133 36-130 (797)
21 KOG2282|consensus 98.5 2.6E-08 5.6E-13 82.7 1.0 58 72-133 99-156 (708)
22 PRK07569 bidirectional hydroge 98.5 6.2E-08 1.3E-12 73.9 2.5 102 19-133 20-127 (234)
23 PRK08493 NADH dehydrogenase su 98.5 6.2E-08 1.3E-12 85.2 2.1 102 19-133 18-123 (819)
24 PRK08166 NADH dehydrogenase su 98.4 1.6E-07 3.4E-12 83.1 2.4 89 40-133 33-130 (847)
25 COG3383 Uncharacterized anaero 98.3 2.9E-07 6.3E-12 79.5 1.5 101 18-134 21-129 (978)
26 PRK12814 putative NADPH-depend 98.0 6.8E-06 1.5E-10 71.0 5.1 33 1-33 69-101 (652)
27 PRK05113 electron transport co 97.9 8.1E-06 1.8E-10 60.6 2.7 27 31-57 69-95 (191)
28 PRK12814 putative NADPH-depend 97.8 1.1E-05 2.5E-10 69.6 3.1 53 31-84 568-625 (652)
29 TIGR01944 rnfB electron transp 97.7 3.4E-05 7.4E-10 55.9 3.5 66 27-94 64-132 (165)
30 PRK06991 ferredoxin; Provision 97.5 0.0001 2.2E-09 57.5 3.6 68 25-94 35-104 (270)
31 PF12798 Fer4_3: 4Fe-4S bindin 97.4 2.3E-05 5E-10 34.7 -0.4 15 77-91 1-15 (15)
32 PF00037 Fer4: 4Fe-4S binding 96.7 0.00031 6.7E-09 34.8 -0.5 18 76-93 7-24 (24)
33 PF12837 Fer4_6: 4Fe-4S bindin 96.6 0.00036 7.8E-09 34.7 -0.6 18 75-92 7-24 (24)
34 COG1143 NuoI Formate hydrogenl 96.3 0.001 2.2E-08 48.7 0.2 22 73-94 93-114 (172)
35 PF13187 Fer4_9: 4Fe-4S diclus 96.3 0.00081 1.8E-08 39.4 -0.4 20 73-92 36-55 (55)
36 PF13746 Fer4_18: 4Fe-4S diclu 95.4 0.0048 1.1E-07 38.3 0.4 20 72-91 47-66 (69)
37 PF13484 Fer4_16: 4Fe-4S doubl 95.3 0.0027 5.9E-08 38.7 -1.0 19 77-95 2-20 (67)
38 PF12838 Fer4_7: 4Fe-4S diclus 95.0 0.0043 9.3E-08 36.0 -0.8 18 77-94 2-19 (52)
39 PF14697 Fer4_21: 4Fe-4S diclu 94.8 0.011 2.5E-07 35.5 0.8 19 75-93 39-58 (59)
40 PF12838 Fer4_7: 4Fe-4S diclus 94.7 0.007 1.5E-07 35.1 -0.5 19 73-91 34-52 (52)
41 PF13237 Fer4_10: 4Fe-4S diclu 94.6 0.014 3E-07 33.8 0.7 36 75-110 7-45 (52)
42 CHL00065 psaC photosystem I su 94.4 0.014 3E-07 37.1 0.4 24 75-98 46-69 (81)
43 PRK08764 ferredoxin; Provision 94.2 0.043 9.3E-07 38.4 2.6 55 75-133 15-69 (135)
44 PF12800 Fer4_4: 4Fe-4S bindin 94.0 0.024 5.3E-07 25.6 0.7 15 76-90 3-17 (17)
45 PRK08222 hydrogenase 4 subunit 93.9 0.031 6.7E-07 41.1 1.5 39 75-113 73-124 (181)
46 PLN00071 photosystem I subunit 93.7 0.022 4.8E-07 36.0 0.3 25 74-98 45-69 (81)
47 PF13187 Fer4_9: 4Fe-4S diclus 93.4 0.016 3.5E-07 33.7 -0.6 19 77-95 2-20 (55)
48 TIGR03048 PS_I_psaC photosyste 93.3 0.023 5E-07 36.0 -0.0 24 75-98 45-68 (80)
49 KOG3256|consensus 93.3 0.038 8.3E-07 40.2 1.1 24 71-94 146-169 (212)
50 TIGR02936 fdxN_nitrog ferredox 93.2 0.018 3.9E-07 37.1 -0.6 22 73-94 68-89 (91)
51 COG1145 NapF Ferredoxin [Energ 93.1 0.028 6.1E-07 36.2 0.1 21 74-94 28-48 (99)
52 COG1143 NuoI Formate hydrogenl 93.1 0.033 7.2E-07 40.7 0.5 22 74-95 54-75 (172)
53 PRK02651 photosystem I subunit 93.1 0.036 7.9E-07 34.9 0.6 24 75-98 46-69 (81)
54 TIGR01971 NuoI NADH-quinone ox 92.1 0.066 1.4E-06 36.4 0.9 24 73-96 80-103 (122)
55 TIGR00403 ndhI NADH-plastoquin 92.0 0.052 1.1E-06 40.0 0.3 21 74-94 101-121 (183)
56 PRK05888 NADH dehydrogenase su 91.9 0.062 1.3E-06 38.7 0.6 23 73-95 95-117 (164)
57 COG2221 DsrA Dissimilatory sul 91.6 0.051 1.1E-06 43.3 -0.0 21 76-96 173-193 (317)
58 PRK09626 oorD 2-oxoglutarate-a 91.6 0.084 1.8E-06 35.1 1.0 18 76-93 17-34 (103)
59 PRK06273 ferredoxin; Provision 91.5 0.061 1.3E-06 39.1 0.2 19 76-94 50-68 (165)
60 TIGR01971 NuoI NADH-quinone ox 91.3 0.083 1.8E-06 35.9 0.7 21 75-95 43-63 (122)
61 TIGR00402 napF ferredoxin-type 91.2 0.078 1.7E-06 35.2 0.5 21 75-95 66-86 (101)
62 PRK08348 NADH-plastoquinone ox 91.0 0.084 1.8E-06 36.0 0.5 20 75-94 42-61 (120)
63 PRK08348 NADH-plastoquinone ox 91.0 0.063 1.4E-06 36.6 -0.1 22 75-96 73-94 (120)
64 PRK09477 napH quinol dehydroge 90.6 0.071 1.5E-06 41.5 -0.2 20 75-94 242-261 (271)
65 PRK08222 hydrogenase 4 subunit 90.5 0.097 2.1E-06 38.5 0.5 21 74-94 37-57 (181)
66 PRK06273 ferredoxin; Provision 90.1 0.1 2.2E-06 37.9 0.3 21 73-93 89-109 (165)
67 PF14697 Fer4_21: 4Fe-4S diclu 90.1 0.12 2.6E-06 31.0 0.6 21 76-96 7-27 (59)
68 PRK09626 oorD 2-oxoglutarate-a 90.0 0.1 2.2E-06 34.7 0.2 20 75-94 53-72 (103)
69 CHL00014 ndhI NADH dehydrogena 90.0 0.1 2.2E-06 37.8 0.2 20 75-94 99-118 (167)
70 TIGR03048 PS_I_psaC photosyste 89.9 0.12 2.6E-06 32.6 0.5 20 76-95 9-28 (80)
71 PRK10194 ferredoxin-type prote 89.8 0.11 2.3E-06 37.4 0.2 19 76-94 139-157 (163)
72 PRK09898 hypothetical protein; 89.7 0.07 1.5E-06 39.9 -0.8 21 76-96 182-202 (208)
73 PRK09624 porD pyuvate ferredox 89.6 0.11 2.4E-06 34.8 0.2 20 75-94 81-100 (105)
74 TIGR02936 fdxN_nitrog ferredox 89.6 0.14 3E-06 32.9 0.6 22 74-95 20-41 (91)
75 PRK02651 photosystem I subunit 89.6 0.15 3.3E-06 32.0 0.8 23 74-96 8-30 (81)
76 PRK09625 porD pyruvate flavodo 89.4 0.094 2E-06 36.7 -0.3 19 75-93 89-107 (133)
77 TIGR02163 napH_ ferredoxin-typ 89.3 0.099 2.1E-06 40.4 -0.2 19 75-93 234-252 (255)
78 COG1146 Ferredoxin [Energy pro 89.3 0.11 2.3E-06 31.8 -0.1 25 71-95 37-61 (68)
79 TIGR02179 PorD_KorD 2-oxoacid: 89.2 0.13 2.9E-06 32.0 0.3 20 75-94 55-74 (78)
80 TIGR02912 sulfite_red_C sulfit 88.4 0.14 3E-06 40.7 -0.0 20 76-95 202-221 (314)
81 COG1600 Uncharacterized Fe-S p 88.3 0.12 2.7E-06 41.6 -0.4 21 76-96 186-206 (337)
82 PRK05888 NADH dehydrogenase su 88.2 0.26 5.7E-06 35.4 1.3 20 75-94 58-77 (164)
83 PRK12387 formate hydrogenlyase 88.1 0.18 3.8E-06 36.9 0.4 39 75-113 73-124 (180)
84 PRK12387 formate hydrogenlyase 87.9 0.18 4E-06 36.8 0.4 21 74-94 37-57 (180)
85 TIGR00402 napF ferredoxin-type 87.9 0.22 4.7E-06 33.0 0.7 19 76-94 35-53 (101)
86 PRK09623 vorD 2-ketoisovalerat 87.8 0.16 3.5E-06 33.9 0.1 20 75-94 81-100 (105)
87 PRK14028 pyruvate ferredoxin o 87.8 0.17 3.7E-06 40.1 0.1 21 75-95 289-309 (312)
88 COG1145 NapF Ferredoxin [Energ 87.7 0.18 3.9E-06 32.4 0.2 23 74-96 62-84 (99)
89 TIGR00397 mauM_napG MauM/NapG 87.4 0.23 5E-06 37.4 0.7 22 75-96 53-74 (213)
90 PRK06991 ferredoxin; Provision 87.4 0.16 3.5E-06 39.7 -0.2 23 75-97 115-137 (270)
91 TIGR02486 RDH reductive dehalo 87.1 0.17 3.7E-06 40.4 -0.2 19 76-94 206-224 (314)
92 TIGR00276 iron-sulfur cluster 87.1 0.14 3.1E-06 40.2 -0.7 19 76-94 160-178 (282)
93 TIGR02494 PFLE_PFLC glycyl-rad 87.0 0.25 5.4E-06 38.5 0.6 17 76-92 49-65 (295)
94 COG1144 Pyruvate:ferredoxin ox 86.8 0.2 4.3E-06 32.8 -0.0 18 76-93 67-84 (91)
95 PLN00071 photosystem I subunit 86.2 0.18 4E-06 31.7 -0.4 20 76-95 10-29 (81)
96 PF13183 Fer4_8: 4Fe-4S diclus 85.8 0.16 3.5E-06 29.6 -0.8 17 74-90 40-56 (57)
97 PRK09476 napG quinol dehydroge 85.7 0.34 7.3E-06 37.5 0.8 19 76-94 60-78 (254)
98 TIGR02700 flavo_MJ0208 archaeo 85.4 0.3 6.4E-06 37.2 0.4 19 76-94 149-167 (234)
99 PRK07118 ferredoxin; Validated 85.4 0.24 5.2E-06 38.9 -0.2 21 76-96 214-234 (280)
100 TIGR02910 sulfite_red_A sulfit 85.3 0.35 7.5E-06 39.0 0.7 19 73-91 299-317 (334)
101 PRK10194 ferredoxin-type prote 85.1 0.26 5.7E-06 35.3 -0.1 20 75-94 66-85 (163)
102 PRK10330 formate dehydrogenase 85.0 0.29 6.3E-06 35.6 0.1 21 75-95 129-155 (181)
103 TIGR02060 aprB adenosine phosp 84.0 0.24 5.3E-06 34.6 -0.6 21 74-94 44-64 (132)
104 TIGR03290 CoB_CoM_SS_C CoB--Co 83.9 0.75 1.6E-05 32.3 1.8 16 76-91 3-18 (144)
105 TIGR00397 mauM_napG MauM/NapG 83.7 0.38 8.2E-06 36.3 0.3 20 76-95 176-197 (213)
106 TIGR03149 cyt_nit_nrfC cytochr 83.6 0.5 1.1E-05 35.8 0.9 18 76-93 126-143 (225)
107 TIGR02494 PFLE_PFLC glycyl-rad 83.5 0.28 6.1E-06 38.2 -0.5 21 74-94 81-101 (295)
108 TIGR03149 cyt_nit_nrfC cytochr 83.3 0.49 1.1E-05 35.9 0.7 23 74-96 151-183 (225)
109 PRK09624 porD pyuvate ferredox 82.6 0.47 1E-05 31.7 0.4 20 76-95 52-71 (105)
110 TIGR02176 pyruv_ox_red pyruvat 82.2 0.59 1.3E-05 43.5 1.0 20 75-94 683-702 (1165)
111 TIGR02512 Fe_only_hydrog hydro 82.2 0.44 9.4E-06 38.8 0.1 20 75-94 50-69 (374)
112 PF12797 Fer4_2: 4Fe-4S bindin 82.2 0.35 7.7E-06 23.4 -0.3 14 76-89 9-22 (22)
113 PRK09625 porD pyruvate flavodo 82.0 0.4 8.6E-06 33.5 -0.2 19 76-94 60-78 (133)
114 TIGR02512 Fe_only_hydrog hydro 82.0 0.56 1.2E-05 38.2 0.6 18 76-93 8-25 (374)
115 PRK15055 anaerobic sulfite red 81.9 0.57 1.2E-05 37.9 0.7 19 73-91 305-323 (344)
116 TIGR01660 narH nitrate reducta 80.4 0.6 1.3E-05 39.3 0.3 18 76-93 182-201 (492)
117 PRK13795 hypothetical protein; 80.4 0.49 1.1E-05 41.2 -0.2 20 76-95 582-601 (636)
118 PRK10330 formate dehydrogenase 80.2 0.84 1.8E-05 33.2 1.0 19 76-94 88-106 (181)
119 TIGR00403 ndhI NADH-plastoquin 80.2 0.71 1.5E-05 33.9 0.6 20 73-92 60-79 (183)
120 CHL00014 ndhI NADH dehydrogena 80.2 0.61 1.3E-05 33.7 0.3 19 74-92 58-76 (167)
121 PRK07118 ferredoxin; Validated 80.2 0.51 1.1E-05 37.1 -0.2 21 76-96 140-160 (280)
122 PF13247 Fer4_11: 4Fe-4S diclu 80.0 0.49 1.1E-05 31.4 -0.3 14 81-94 82-95 (98)
123 TIGR02700 flavo_MJ0208 archaeo 80.0 0.71 1.5E-05 35.1 0.6 25 76-100 178-203 (234)
124 TIGR03224 benzo_boxA benzoyl-C 79.9 0.66 1.4E-05 38.3 0.4 21 74-94 38-58 (411)
125 TIGR02066 dsrB sulfite reducta 79.2 0.65 1.4E-05 37.5 0.2 18 76-93 215-232 (341)
126 COG1142 HycB Fe-S-cluster-cont 78.8 0.73 1.6E-05 33.5 0.3 21 76-96 83-103 (165)
127 TIGR00384 dhsB succinate dehyd 78.8 0.92 2E-05 34.1 0.8 20 73-92 192-211 (220)
128 PRK12771 putative glutamate sy 78.6 0.6 1.3E-05 39.8 -0.2 18 76-93 542-559 (564)
129 TIGR02163 napH_ ferredoxin-typ 78.3 0.69 1.5E-05 35.7 0.1 19 74-92 200-218 (255)
130 TIGR03315 Se_ygfK putative sel 77.8 0.78 1.7E-05 42.2 0.2 20 76-95 922-941 (1012)
131 TIGR02912 sulfite_red_C sulfit 77.1 0.93 2E-05 35.9 0.5 16 76-91 170-185 (314)
132 PRK14993 tetrathionate reducta 76.9 0.85 1.8E-05 35.1 0.2 18 76-93 131-148 (244)
133 TIGR03478 DMSO_red_II_bet DMSO 76.8 0.75 1.6E-05 36.9 -0.1 17 77-93 164-180 (321)
134 PRK14993 tetrathionate reducta 76.7 1 2.2E-05 34.7 0.6 22 74-95 156-186 (244)
135 PRK09476 napG quinol dehydroge 76.4 0.72 1.6E-05 35.7 -0.3 19 76-94 185-205 (254)
136 PRK12769 putative oxidoreducta 75.9 1.4 3E-05 38.4 1.3 19 76-94 86-104 (654)
137 TIGR02176 pyruv_ox_red pyruvat 75.8 1.1 2.4E-05 41.8 0.7 21 74-94 738-760 (1165)
138 PRK05035 electron transport co 75.6 1 2.3E-05 39.7 0.4 17 76-92 371-387 (695)
139 COG0437 HybA Fe-S-cluster-cont 75.5 1.3 2.8E-05 33.3 0.8 21 74-94 126-155 (203)
140 PRK10882 hydrogenase 2 protein 75.3 1.1 2.3E-05 36.1 0.4 45 3-47 69-130 (328)
141 PRK09477 napH quinol dehydroge 75.3 1.5 3.2E-05 34.2 1.1 20 74-93 207-226 (271)
142 TIGR02951 DMSO_dmsB DMSO reduc 75.0 0.94 2E-05 32.3 0.0 13 82-94 138-150 (161)
143 PRK14028 pyruvate ferredoxin o 75.0 1.8 3.9E-05 34.2 1.6 19 75-93 247-265 (312)
144 PRK09898 hypothetical protein; 74.4 1.5 3.4E-05 32.6 1.0 20 76-95 122-143 (208)
145 PRK10882 hydrogenase 2 protein 74.2 1.3 2.8E-05 35.6 0.6 16 77-92 145-160 (328)
146 TIGR03479 DMSO_red_II_alp DMSO 74.2 1.4 3.1E-05 39.9 0.9 38 82-119 25-76 (912)
147 COG2768 Uncharacterized Fe-S c 74.2 1.2 2.5E-05 35.7 0.3 20 76-95 194-213 (354)
148 PRK08318 dihydropyrimidine deh 74.0 1.1 2.3E-05 37.0 0.1 20 76-95 378-398 (420)
149 PRK12769 putative oxidoreducta 73.9 1.7 3.6E-05 37.9 1.2 22 74-95 53-76 (654)
150 TIGR02066 dsrB sulfite reducta 73.5 2 4.3E-05 34.7 1.5 18 77-94 183-200 (341)
151 TIGR01944 rnfB electron transp 73.4 3.1 6.7E-05 29.9 2.4 28 106-133 68-95 (165)
152 PRK09853 putative selenate red 72.6 1.8 3.8E-05 39.9 1.1 15 79-93 894-908 (1019)
153 PRK09326 F420H2 dehydrogenase 72.4 0.86 1.9E-05 36.6 -0.8 21 75-95 12-32 (341)
154 TIGR03478 DMSO_red_II_bet DMSO 72.4 1.6 3.5E-05 35.0 0.7 18 76-93 130-149 (321)
155 TIGR02951 DMSO_dmsB DMSO reduc 72.3 1.5 3.4E-05 31.2 0.6 18 76-93 63-82 (161)
156 PRK13984 putative oxidoreducta 71.8 1.7 3.7E-05 37.4 0.8 21 74-94 44-64 (604)
157 COG2878 Predicted NADH:ubiquin 71.6 1.8 4E-05 32.1 0.8 19 76-94 146-164 (198)
158 COG1149 MinD superfamily P-loo 71.5 1.8 4E-05 34.0 0.9 23 73-95 97-119 (284)
159 TIGR02745 ccoG_rdxA_fixG cytoc 71.1 0.85 1.8E-05 38.1 -1.1 18 74-91 230-247 (434)
160 TIGR01582 FDH-beta formate deh 71.0 1.5 3.3E-05 34.5 0.3 19 76-94 125-143 (283)
161 cd07030 RNAP_D D subunit of Ar 70.7 1.4 3E-05 34.0 -0.0 19 76-94 170-188 (259)
162 TIGR02060 aprB adenosine phosp 70.2 1.6 3.4E-05 30.5 0.2 19 76-94 9-32 (132)
163 PRK11168 glpC sn-glycerol-3-ph 70.0 2.1 4.6E-05 34.7 0.9 20 74-93 6-25 (396)
164 TIGR01660 narH nitrate reducta 69.8 1.1 2.4E-05 37.8 -0.8 33 76-110 215-247 (492)
165 COG0437 HybA Fe-S-cluster-cont 69.8 2 4.3E-05 32.3 0.7 18 76-93 101-118 (203)
166 TIGR03336 IOR_alpha indolepyru 69.5 1.2 2.7E-05 38.4 -0.5 17 76-92 579-595 (595)
167 TIGR03287 methan_mark_16 putat 69.1 1.3 2.8E-05 36.5 -0.4 20 75-94 330-349 (391)
168 PRK12809 putative oxidoreducta 69.0 2.1 4.6E-05 37.2 0.8 19 76-94 86-104 (639)
169 PF13534 Fer4_17: 4Fe-4S diclu 68.8 1.2 2.6E-05 26.2 -0.6 17 77-93 2-18 (61)
170 PF04879 Molybdop_Fe4S4: Molyb 68.6 1.3 2.9E-05 25.7 -0.4 19 101-119 3-21 (55)
171 TIGR03294 FrhG coenzyme F420 h 68.0 1.2 2.5E-05 34.0 -0.9 19 76-94 175-193 (228)
172 TIGR01945 rnfC electron transp 67.0 2.8 6E-05 34.9 1.0 18 75-92 363-380 (435)
173 PRK05950 sdhB succinate dehydr 66.9 2.7 5.8E-05 31.9 0.9 20 73-92 196-215 (232)
174 PRK15449 ferredoxin-like prote 66.8 1.7 3.8E-05 28.7 -0.1 14 81-94 37-50 (95)
175 COG1149 MinD superfamily P-loo 66.8 3.3 7.1E-05 32.7 1.3 19 76-94 70-88 (284)
176 PRK05113 electron transport co 66.7 5.8 0.00013 29.3 2.7 26 107-132 71-96 (191)
177 TIGR03290 CoB_CoM_SS_C CoB--Co 66.4 2.5 5.5E-05 29.6 0.6 20 73-92 44-63 (144)
178 TIGR03287 methan_mark_16 putat 66.2 1.5 3.3E-05 36.1 -0.6 19 76-94 303-323 (391)
179 PF06902 Fer4_19: Divergent 4F 65.5 2.3 5.1E-05 25.9 0.3 14 82-95 49-62 (64)
180 PRK07570 succinate dehydrogena 65.4 3 6.5E-05 32.2 0.9 20 73-92 210-229 (250)
181 PRK12809 putative oxidoreducta 65.2 2.6 5.7E-05 36.6 0.6 18 76-93 55-74 (639)
182 PRK00783 DNA-directed RNA poly 64.6 2.1 4.5E-05 33.1 -0.1 19 76-94 200-218 (263)
183 PRK12385 fumarate reductase ir 64.6 2.8 6E-05 32.2 0.6 20 73-92 201-220 (244)
184 COG1139 Uncharacterized conser 64.0 2.7 5.8E-05 35.1 0.4 20 74-93 307-326 (459)
185 PRK08640 sdhB succinate dehydr 63.9 2.9 6.4E-05 32.2 0.6 20 73-92 150-169 (249)
186 PRK13552 frdB fumarate reducta 62.8 3.4 7.3E-05 31.7 0.8 21 72-92 203-223 (239)
187 PRK12575 succinate dehydrogena 62.8 3.3 7.2E-05 31.7 0.7 20 73-92 199-218 (235)
188 TIGR00273 iron-sulfur cluster- 62.5 2.8 6E-05 35.0 0.3 20 73-92 341-360 (432)
189 PRK07570 succinate dehydrogena 60.7 3.9 8.4E-05 31.6 0.8 18 74-91 156-173 (250)
190 PRK08640 sdhB succinate dehydr 60.3 4 8.8E-05 31.5 0.8 20 73-92 207-226 (249)
191 cd07030 RNAP_D D subunit of Ar 59.9 2.8 6.2E-05 32.3 -0.1 19 76-94 200-218 (259)
192 TIGR00384 dhsB succinate dehyd 59.8 3.9 8.5E-05 30.7 0.7 18 74-91 137-154 (220)
193 TIGR01582 FDH-beta formate deh 59.8 2.6 5.6E-05 33.2 -0.4 21 74-94 150-179 (283)
194 TIGR00273 iron-sulfur cluster- 59.3 3.8 8.3E-05 34.2 0.6 19 74-92 292-310 (432)
195 PRK12576 succinate dehydrogena 59.1 4.1 8.9E-05 31.9 0.7 20 73-92 204-223 (279)
196 PRK12576 succinate dehydrogena 58.8 4.3 9.4E-05 31.8 0.8 19 74-92 151-169 (279)
197 PRK12771 putative glutamate sy 58.2 3.8 8.2E-05 35.0 0.3 19 76-94 511-529 (564)
198 COG1148 HdrA Heterodisulfide r 57.4 5.7 0.00012 34.1 1.3 19 76-95 562-580 (622)
199 PRK13795 hypothetical protein; 57.3 3.2 7E-05 36.2 -0.2 19 76-94 613-631 (636)
200 PRK12575 succinate dehydrogena 57.0 5.1 0.00011 30.7 0.8 20 73-92 142-161 (235)
201 PRK08318 dihydropyrimidine deh 56.4 5.2 0.00011 32.9 0.9 16 76-91 343-358 (420)
202 PRK12386 fumarate reductase ir 55.9 5.7 0.00012 30.8 1.0 21 72-92 197-217 (251)
203 PRK15055 anaerobic sulfite red 55.3 5.1 0.00011 32.5 0.6 16 74-89 225-240 (344)
204 PRK09853 putative selenate red 55.2 4.5 9.7E-05 37.4 0.3 20 75-94 926-945 (1019)
205 TIGR03315 Se_ygfK putative sel 53.5 6.7 0.00015 36.3 1.2 15 79-93 889-903 (1012)
206 TIGR02064 dsrA sulfite reducta 53.1 6.6 0.00014 32.5 1.0 15 81-95 248-262 (402)
207 COG1148 HdrA Heterodisulfide r 52.9 4.9 0.00011 34.4 0.2 22 74-95 586-607 (622)
208 TIGR02910 sulfite_red_A sulfit 52.2 6.1 0.00013 31.9 0.6 17 75-91 220-236 (334)
209 COG1245 Predicted ATPase, RNas 52.2 5.2 0.00011 34.1 0.2 20 76-95 51-70 (591)
210 COG3592 Uncharacterized conser 51.8 3.8 8.2E-05 25.5 -0.5 18 78-95 55-72 (74)
211 PLN00129 succinate dehydrogena 50.7 6.7 0.00014 30.9 0.6 20 73-92 242-261 (276)
212 PRK12386 fumarate reductase ir 50.7 6.7 0.00015 30.4 0.6 20 73-92 140-159 (251)
213 PRK12577 succinate dehydrogena 50.1 6.4 0.00014 31.6 0.4 20 73-92 207-226 (329)
214 TIGR02745 ccoG_rdxA_fixG cytoc 49.8 4.3 9.4E-05 33.9 -0.6 17 75-92 255-271 (434)
215 COG0479 FrdB Succinate dehydro 49.8 8 0.00017 29.7 0.9 20 73-92 196-215 (234)
216 PRK12577 succinate dehydrogena 49.3 7.3 0.00016 31.2 0.7 18 74-91 151-168 (329)
217 PRK13552 frdB fumarate reducta 49.2 6.2 0.00013 30.2 0.2 18 75-92 149-166 (239)
218 PLN00129 succinate dehydrogena 49.1 8.3 0.00018 30.3 0.9 17 75-91 187-203 (276)
219 PRK12385 fumarate reductase ir 48.9 7.5 0.00016 29.9 0.6 17 75-91 147-163 (244)
220 cd01916 ACS_1 Acetyl-CoA synth 48.8 5.3 0.00011 35.6 -0.2 19 74-92 402-420 (731)
221 COG1139 Uncharacterized conser 48.8 7.7 0.00017 32.5 0.7 20 72-91 355-374 (459)
222 PRK05950 sdhB succinate dehydr 48.6 7.6 0.00016 29.4 0.6 17 74-90 140-156 (232)
223 PRK13409 putative ATPase RIL; 48.2 7.8 0.00017 33.5 0.7 19 76-94 50-68 (590)
224 TIGR03379 glycerol3P_GlpC glyc 48.1 8.4 0.00018 31.3 0.9 19 74-92 4-22 (397)
225 COG1941 FrhG Coenzyme F420-red 48.1 22 0.00047 27.5 3.0 25 71-95 186-210 (247)
226 PRK11274 glcF glycolate oxidas 48.0 7.7 0.00017 31.6 0.6 21 72-92 70-90 (407)
227 PRK06259 succinate dehydrogena 46.7 9.2 0.0002 32.0 0.9 22 72-93 182-203 (486)
228 PRK13984 putative oxidoreducta 46.5 6.7 0.00015 33.7 0.1 20 75-94 86-105 (604)
229 COG0247 GlpC Fe-S oxidoreducta 44.7 11 0.00023 30.3 0.9 20 74-93 8-27 (388)
230 PRK11274 glcF glycolate oxidas 44.4 11 0.00023 30.7 1.0 20 73-92 21-40 (407)
231 PRK11168 glpC sn-glycerol-3-ph 43.9 11 0.00024 30.5 0.9 20 72-91 51-70 (396)
232 PF00220 Hormone_4: Neurohypop 43.6 11 0.00025 14.1 0.5 6 85-90 4-9 (9)
233 PRK09326 F420H2 dehydrogenase 43.5 9.9 0.00021 30.5 0.6 18 75-92 53-70 (341)
234 PRK00941 acetyl-CoA decarbonyl 43.2 7.7 0.00017 34.8 -0.1 17 75-91 442-458 (781)
235 COG1150 HdrC Heterodisulfide r 42.5 12 0.00026 28.0 0.8 21 74-94 38-58 (195)
236 PRK06259 succinate dehydrogena 42.1 11 0.00025 31.5 0.8 19 73-91 131-149 (486)
237 KOG0421|consensus 41.8 36 0.00078 24.3 3.1 30 1-30 19-48 (175)
238 TIGR03379 glycerol3P_GlpC glyc 41.3 13 0.00027 30.3 0.9 21 72-92 49-69 (397)
239 TIGR01936 nqrA NADH:ubiquinone 41.2 10 0.00022 31.8 0.4 17 76-92 374-390 (447)
240 TIGR02064 dsrA sulfite reducta 39.9 12 0.00027 30.9 0.7 16 76-92 273-288 (402)
241 PF13223 DUF4031: Protein of u 38.9 18 0.00039 23.3 1.1 20 114-133 23-42 (83)
242 COG1035 FrhB Coenzyme F420-red 36.8 11 0.00024 30.4 -0.1 19 75-94 5-23 (332)
243 TIGR00314 cdhA CO dehydrogenas 36.3 11 0.00024 33.9 -0.2 16 76-91 438-453 (784)
244 PRK05352 Na(+)-translocating N 35.9 14 0.00031 31.0 0.5 18 75-92 374-391 (448)
245 COG2768 Uncharacterized Fe-S c 35.1 14 0.0003 29.8 0.2 19 75-93 221-239 (354)
246 cd01916 ACS_1 Acetyl-CoA synth 34.0 18 0.0004 32.3 0.8 17 75-91 365-381 (731)
247 PF09237 GAGA: GAGA factor; I 33.9 10 0.00022 22.3 -0.5 14 24-37 19-32 (54)
248 TIGR01945 rnfC electron transp 33.4 19 0.00041 30.0 0.8 19 74-92 401-419 (435)
249 COG4231 Indolepyruvate ferredo 32.7 15 0.00033 32.2 0.1 20 74-93 607-626 (640)
250 TIGR03336 IOR_alpha indolepyru 31.9 16 0.00034 31.7 0.0 17 75-91 550-568 (595)
251 PRK05035 electron transport co 31.6 20 0.00044 31.8 0.7 18 75-92 409-426 (695)
252 PF13459 Fer4_15: 4Fe-4S singl 31.6 14 0.00031 22.0 -0.2 14 76-89 7-20 (65)
253 PF03091 CutA1: CutA1 divalent 30.7 37 0.00081 22.5 1.7 26 4-33 54-79 (102)
254 COG4656 RnfC Predicted NADH:ub 30.4 15 0.00032 31.5 -0.3 17 76-92 366-382 (529)
255 TIGR00314 cdhA CO dehydrogenas 29.7 22 0.00047 32.1 0.6 17 75-91 399-415 (784)
256 cd00350 rubredoxin_like Rubred 29.5 63 0.0014 16.6 2.1 12 102-113 16-27 (33)
257 PF09824 ArsR: ArsR transcript 27.5 1.3E+02 0.0028 21.8 4.0 42 4-57 97-138 (160)
258 PRK00941 acetyl-CoA decarbonyl 26.7 29 0.00063 31.3 0.8 17 75-91 404-420 (781)
259 COG1141 Fer Ferredoxin [Energy 26.6 24 0.00052 21.8 0.2 15 76-90 9-23 (68)
260 PF13370 Fer4_13: 4Fe-4S singl 25.7 16 0.00034 21.5 -0.7 15 76-90 5-19 (58)
261 KOG0917|consensus 25.6 51 0.0011 26.2 1.9 23 2-24 39-61 (338)
262 KOG0723|consensus 25.2 1E+02 0.0022 21.0 3.0 32 9-46 66-97 (112)
263 PF08279 HTH_11: HTH domain; 25.0 1.2E+02 0.0025 16.9 3.0 28 17-54 2-29 (55)
264 PF07381 DUF1495: Winged helix 24.9 1.3E+02 0.0028 19.6 3.4 32 15-55 9-40 (90)
265 PRK10645 divalent-cation toler 24.1 1E+02 0.0022 20.9 2.9 26 4-33 64-89 (112)
266 PF15174 PRNT: Prion-related p 23.7 1.1E+02 0.0025 17.4 2.6 25 13-37 20-44 (51)
267 PRK00398 rpoP DNA-directed RNA 23.1 48 0.001 18.3 1.0 9 103-111 21-29 (46)
268 PF09538 FYDLN_acid: Protein o 22.8 55 0.0012 22.0 1.4 19 98-116 21-39 (108)
269 PF07754 DUF1610: Domain of un 22.7 77 0.0017 15.5 1.6 6 105-110 18-23 (24)
270 COG1140 NarY Nitrate reductase 22.4 36 0.00079 28.4 0.5 21 76-96 182-204 (513)
271 PF12404 DUF3663: Peptidase ; 22.2 1.1E+02 0.0024 19.4 2.6 23 1-23 24-47 (77)
272 PRK15360 pathogenicity island 22.2 1.3E+02 0.0028 21.2 3.2 26 4-29 87-114 (137)
273 PF12801 Fer4_5: 4Fe-4S bindin 21.7 21 0.00046 19.8 -0.7 12 83-94 24-35 (48)
274 COG0348 NapH Polyferredoxin [E 21.4 28 0.0006 28.6 -0.3 17 76-92 246-262 (386)
275 COG3373 Uncharacterized protei 20.2 1.9E+02 0.0041 19.1 3.5 33 14-55 16-48 (108)
276 PF13186 SPASM: Iron-sulfur cl 20.0 1.1E+02 0.0024 17.2 2.3 23 9-35 41-63 (64)
No 1
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=99.97 E-value=7.4e-32 Score=229.06 Aligned_cols=134 Identities=37% Similarity=0.685 Sum_probs=112.8
Q ss_pred CCCCEEEcCCHHHHHHHHHHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCCCccccccc-------------cCCCcc
Q psy3842 1 MKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDID-------------FSGKRW 67 (139)
Q Consensus 1 ~~Gm~V~T~s~~v~~~r~~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~~~~~-------------~~~~r~ 67 (139)
+|||+|.|+||+|+++|+.+|||||.|||+|||+|+++|+|+|||++..||+..+||.+.. ++-+||
T Consensus 67 ~dGM~I~T~s~~vk~~R~~vmE~LLiNHPlDCpiCD~gGeCeLQD~a~~~G~~~sr~~~~kr~~~~~~~gp~v~~dm~RC 146 (693)
T COG1034 67 TDGMVISTNSEEVKKAREGVMEFLLINHPLDCPVCDKGGECELQDLAVKYGVSHSRYRETKRTHRDKDLGPLVKYDMNRC 146 (693)
T ss_pred CCCeEEecCCHHHHHHHHHHHHHHHhcCCCCCCccCCCCCchhHHHHHHhCCCcccccccccccccccccchhhcccccc
Confidence 5899999999999999999999999999999999999999999999999999999986531 122333
Q ss_pred ------------------------------ccccccceeecccCceecccCCcccccc-------eeeeccccccCCCCC
Q psy3842 68 ------------------------------GYLREKLFLSELSGKRESTCAPAREGVM-------EFLLVNHPLDCPICD 110 (139)
Q Consensus 68 ------------------------------~t~~~~~~~~~~~g~~~~~CPtgal~~~-------e~~l~~~~~~C~~C~ 110 (139)
+|+.+++...+.||+|+++||||||+.+ .|.+...+++|.+|+
T Consensus 147 I~C~RCVR~c~eiaG~~~l~~~~rg~~~~i~t~~~~~l~se~cGncv~vCPvGALt~K~~~~~ar~wEl~k~~si~~~~a 226 (693)
T COG1034 147 ILCTRCVRFCKEIAGTHELGVIKRGENSEIGTYLDQPLESELCGNCVDVCPVGALTSKPFAFTARKWELKKTPSICVHCA 226 (693)
T ss_pred eechhhHHhhhhhcCccccceeecCCCceeecccccccccccccceeeeccccccccChHHhhhccchhccCceeeccCc
Confidence 4555677788999999999999999865 577888999999999
Q ss_pred CCCcchhHH---------------HHHHhCCCCCCCCCC
Q psy3842 111 QGGECDLQD---------------QSMAFGSDRSRFTDI 134 (139)
Q Consensus 111 ~g~~~eL~~---------------~~~~~gv~~~rf~~~ 134 (139)
+||...... ...+|..+++||...
T Consensus 227 ~g~~i~~d~r~~ev~ri~~r~n~~vNe~~~~d~~RF~~d 265 (693)
T COG1034 227 VGCNIRVDERYGEVRRILPRYNEVVNEEWLCDKGRFAYD 265 (693)
T ss_pred cccceeecccccchhhhcccchhHHHHHHhccccccccc
Confidence 999776533 345677888888654
No 2
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=99.97 E-value=7.4e-31 Score=224.96 Aligned_cols=119 Identities=42% Similarity=0.638 Sum_probs=101.6
Q ss_pred CCCCEEEcCCHHHHHHHHHHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCCCccccccc-------------cCCCcc
Q psy3842 1 MKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDID-------------FSGKRW 67 (139)
Q Consensus 1 ~~Gm~V~T~s~~v~~~r~~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~~~~~-------------~~~~r~ 67 (139)
+|||+|+|+||+|+++||.+|||||++||+||++|+++|+|+||++++.||+...||.+.. ++.+||
T Consensus 68 ~~gm~v~T~s~~v~~~r~~~le~ll~~Hp~dC~~C~~~g~C~Lq~~~~~~g~~~~r~~~~~~~~~~~~~~p~i~~~~~rC 147 (687)
T PRK09130 68 GEGMVIFTNTPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDTSRYHENKRAVEDKYMGPLVKTVMTRC 147 (687)
T ss_pred CCCCEEEeCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHhCCCCCCCCccccccCcCCCCCcEEEecccC
Confidence 5899999999999999999999999999999999999999999999999999988886421 122333
Q ss_pred ------------------------------ccccccceeecccCceecccCCcccccc-------eeeeccccccCCCCC
Q psy3842 68 ------------------------------GYLREKLFLSELSGKRESTCAPAREGVM-------EFLLVNHPLDCPICD 110 (139)
Q Consensus 68 ------------------------------~t~~~~~~~~~~~g~~~~~CPtgal~~~-------e~~l~~~~~~C~~C~ 110 (139)
+++.+..+.++.||+|+++||||||+.+ .|.++.++++|++|+
T Consensus 148 I~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~~G~cv~~CPvgAl~~k~~~~~~r~w~l~~~~sic~~c~ 227 (687)
T PRK09130 148 IHCTRCVRFATEVAGVPELGAIGRGEDMEITTYLEQALTSELSGNVIDLCPVGALTSKPYAFTARPWELKKTESIDVMDA 227 (687)
T ss_pred CcccHHHHHHHhhcCCceEEeeecCCCCEEccCCCCCccccccccHHhhCCCccccccccccccCcceeeeccccCCCCC
Confidence 2334556678999999999999999865 477888899999999
Q ss_pred CCCcchhHH
Q psy3842 111 QGGECDLQD 119 (139)
Q Consensus 111 ~g~~~eL~~ 119 (139)
+||+.+++.
T Consensus 228 vGC~i~v~~ 236 (687)
T PRK09130 228 VGSNIRVDT 236 (687)
T ss_pred CCCCeEEEE
Confidence 999998853
No 3
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=99.96 E-value=9.6e-30 Score=215.55 Aligned_cols=119 Identities=46% Similarity=0.753 Sum_probs=100.1
Q ss_pred CCCCEEEcCCHHHHHHHHHHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCCCccccccc-------------cCCCcc
Q psy3842 1 MKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDID-------------FSGKRW 67 (139)
Q Consensus 1 ~~Gm~V~T~s~~v~~~r~~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~~~~~-------------~~~~r~ 67 (139)
+|||+|.|+||+|+++||.+|||||++||+||++|+++|+|+||++++.||+...+|.... ++.+||
T Consensus 65 ~~gm~v~t~~~~~~~~r~~~~e~ll~~h~~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rC 144 (603)
T TIGR01973 65 TDGMKISTNSEKVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAVMYGSDRSRFREKKRTVENKYLGPLIKTEMTRC 144 (603)
T ss_pred CCCCEEEeCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCCCChHHHHHHHhCCCCCCCCcccccCCCCCCCCCeEecCCcC
Confidence 5899999999999999999999999999999999999999999999999999988885321 233333
Q ss_pred ------------------------------ccccccceeecccCceecccCCcccccc-------eeeeccccccCCCCC
Q psy3842 68 ------------------------------GYLREKLFLSELSGKRESTCAPAREGVM-------EFLLVNHPLDCPICD 110 (139)
Q Consensus 68 ------------------------------~t~~~~~~~~~~~g~~~~~CPtgal~~~-------e~~l~~~~~~C~~C~ 110 (139)
+++.+.++.+++||+|+++||||||+.+ .|.++.+++.|++|+
T Consensus 145 I~C~rCvr~c~e~~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~vCP~GAl~~k~~~~~~r~w~~~~~~t~C~~C~ 224 (603)
T TIGR01973 145 IHCTRCVRFANEVAGVEDLGVIGRGNNVEIGTYEGKTLESELSGNLIDICPVGALTSKPYAFKARPWELKSTPSICVHDS 224 (603)
T ss_pred ccccHHHHHHHHhhCCceEEEeccCCCCEEecCCCCCCCCcccCChHhhCCcccccccccccccccccceeccccCCCcC
Confidence 1223445678999999999999999875 466778889999999
Q ss_pred CCCcchhHH
Q psy3842 111 QGGECDLQD 119 (139)
Q Consensus 111 ~g~~~eL~~ 119 (139)
.||...++.
T Consensus 225 ~gC~i~v~v 233 (603)
T TIGR01973 225 VGCNIRVDE 233 (603)
T ss_pred CCCceeEEe
Confidence 999887754
No 4
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=99.96 E-value=2.4e-29 Score=218.72 Aligned_cols=119 Identities=41% Similarity=0.717 Sum_probs=99.9
Q ss_pred CCCCEEEcC--CHHHHHHHHHHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCCCcccccc------c--------cCC
Q psy3842 1 MKGWRVKTN--SEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDI------D--------FSG 64 (139)
Q Consensus 1 ~~Gm~V~T~--s~~v~~~r~~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~~~~------~--------~~~ 64 (139)
+|||+|+|+ ||+|+++||.+|||||+|||+||++|+++|+|+||++++.||+...+|... + ++.
T Consensus 70 ~~gm~V~t~~~s~~v~~~r~~~le~ll~~hp~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~ 149 (797)
T PRK07860 70 TDGMVVKTQLTSPVADKAQHGVMELLLINHPLDCPVCDKGGECPLQNQAMSNGRAESRFTDVKRTFPKPINISTQVLLDR 149 (797)
T ss_pred CCCcEEEeCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHHhCCCCccCccccccCCCCCCCCcceeecc
Confidence 589999999 999999999999999999999999999999999999999999988887531 1 123
Q ss_pred Ccc------------------------------ccccccceeecccCceecccCCcccccce-------eeeccccccCC
Q psy3842 65 KRW------------------------------GYLREKLFLSELSGKRESTCAPAREGVME-------FLLVNHPLDCP 107 (139)
Q Consensus 65 ~r~------------------------------~t~~~~~~~~~~~g~~~~~CPtgal~~~e-------~~l~~~~~~C~ 107 (139)
+|| +++.+..+.+++||+|+++||||||+.+. |.++.++++|+
T Consensus 150 ~rCI~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cG~cv~vCP~GAl~~k~~~~~~r~w~l~~~~SvC~ 229 (797)
T PRK07860 150 ERCVLCARCTRFSDQIAGDPFIDLQERGALQQVGIYEGEPFQSYFSGNTVQICPVGALTGAAYRFRARPFDLVSTPSVCE 229 (797)
T ss_pred cccccCcHHHHHHHhhcCCcEEEeeecCCCCEEecCCCCCcCccccCCchhhCCcccccccccccccCcccceecceeCC
Confidence 333 12223456788999999999999998654 66777889999
Q ss_pred CCCCCCcchhHH
Q psy3842 108 ICDQGGECDLQD 119 (139)
Q Consensus 108 ~C~~g~~~eL~~ 119 (139)
+|+.||+..++.
T Consensus 230 ~C~~GC~l~v~v 241 (797)
T PRK07860 230 HCASGCAQRTDH 241 (797)
T ss_pred CCCCCCCeEEEE
Confidence 999999998854
No 5
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=99.96 E-value=2.5e-29 Score=218.08 Aligned_cols=119 Identities=38% Similarity=0.562 Sum_probs=100.3
Q ss_pred CCCCEEEcCCHHHHHHHHHHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCCCccccccc-------------cCCCcc
Q psy3842 1 MKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDID-------------FSGKRW 67 (139)
Q Consensus 1 ~~Gm~V~T~s~~v~~~r~~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~~~~~-------------~~~~r~ 67 (139)
++||+|.|+||+++++||.+|||||++||+||++|+++|+|+||+++++||+...+|.+.. ++.+||
T Consensus 67 ~~gm~v~t~~~~~~~~r~~~l~~ll~~h~~~C~~c~~~g~C~Lq~~a~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rC 146 (776)
T PRK09129 67 TDGMKVFTRSEKALKAQKSVMEFLLINHPLDCPICDQGGECQLQDLAVGYGRSTSRYTEEKRVVFDKDLGPLISTEMTRC 146 (776)
T ss_pred CCCCEEEcCCHHHHHHHHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHHhCCCCCccccccccCCccCCCcceeeccccc
Confidence 5899999999999999999999999999999999999999999999999999988885421 123333
Q ss_pred ------------------------------ccccccceeecccCceecccCCcccccce-------eeeccccccCCCCC
Q psy3842 68 ------------------------------GYLREKLFLSELSGKRESTCAPAREGVME-------FLLVNHPLDCPICD 110 (139)
Q Consensus 68 ------------------------------~t~~~~~~~~~~~g~~~~~CPtgal~~~e-------~~l~~~~~~C~~C~ 110 (139)
+++.+.++.++.||+|+++||||||+.+. |.++.++++|++|+
T Consensus 147 i~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CP~GAl~~k~~~~~~r~w~~~~~~t~C~~C~ 226 (776)
T PRK09129 147 IHCTRCVRFGQEIAGVMELGMMGRGEHSEITTYVGKTVDSELSGNMIDLCPVGALTSKPFRYSARTWELSRRKSVSPHDS 226 (776)
T ss_pred ccCcHHHHHHHHhcCCceeeeeccCCCCEEcCCCCCCccCcccCCchhhCCccccccccccccCCCcccccCCccCCCCC
Confidence 12234456788999999999999998764 66777889999999
Q ss_pred CCCcchhHH
Q psy3842 111 QGGECDLQD 119 (139)
Q Consensus 111 ~g~~~eL~~ 119 (139)
.||...++.
T Consensus 227 ~gC~i~v~v 235 (776)
T PRK09129 227 LGSNLVVHV 235 (776)
T ss_pred CCCCeEEEE
Confidence 999887754
No 6
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=99.95 E-value=1.5e-28 Score=214.96 Aligned_cols=119 Identities=26% Similarity=0.484 Sum_probs=99.4
Q ss_pred CCCCEEEcCCHHHHHHHHHHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCCCcccccc-------------ccCCCcc
Q psy3842 1 MKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDI-------------DFSGKRW 67 (139)
Q Consensus 1 ~~Gm~V~T~s~~v~~~r~~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~~~~-------------~~~~~r~ 67 (139)
++||+|.|+||+++++||.+|||||+|||+||++|+++|+|+||+++++||+...+|... .++.+||
T Consensus 72 ~~gm~v~t~~~~~~~~r~~~~e~ll~~hp~dc~~c~~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~d~~rC 151 (847)
T PRK08166 72 TDGTFISIDDPEAKAFRASVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRC 151 (847)
T ss_pred CCCCEEEeCCHHHHHHHHHHHHHHHhcCCCCCCccCCCCCchHHHHHHHhCCCCccCCCcCccccccCCCCceEecCCcC
Confidence 489999999999999999999999999999999999999999999999999988887431 0123333
Q ss_pred ------------------------------ccccccceeecccCceecccCCcccccc--------eeeeccccccCCCC
Q psy3842 68 ------------------------------GYLREKLFLSELSGKRESTCAPAREGVM--------EFLLVNHPLDCPIC 109 (139)
Q Consensus 68 ------------------------------~t~~~~~~~~~~~g~~~~~CPtgal~~~--------e~~l~~~~~~C~~C 109 (139)
+++.+++..|++||+|+++||||||+.+ .|.++.++++|++|
T Consensus 152 i~C~rCVr~c~e~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~cv~vCP~GAl~~k~~~~~~~r~w~l~~~~s~C~~C 231 (847)
T PRK08166 152 IACYRCVRYYKDYAGGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEVCPTGVFTDKTHSERYNRKWDMQFAPSICQHC 231 (847)
T ss_pred ccccHHHHHHHhhcCcceEEEeecCceeEecCCCCCcccChhhCChHhhCCchhccccccccccCCCceeeEEEeeCCCC
Confidence 1223456688999999999999999754 46666788999999
Q ss_pred CCCCcchhHH
Q psy3842 110 DQGGECDLQD 119 (139)
Q Consensus 110 ~~g~~~eL~~ 119 (139)
+.||+..++.
T Consensus 232 ~~gC~i~v~~ 241 (847)
T PRK08166 232 SVGCNISPGE 241 (847)
T ss_pred cCCCCeEEEe
Confidence 9999988754
No 7
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=99.95 E-value=2e-28 Score=212.17 Aligned_cols=119 Identities=24% Similarity=0.468 Sum_probs=98.5
Q ss_pred CCCCEEEcCCHHHHHHHHHHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCCCcccccc------------ccCCCcc-
Q psy3842 1 MKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDI------------DFSGKRW- 67 (139)
Q Consensus 1 ~~Gm~V~T~s~~v~~~r~~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~~~~------------~~~~~r~- 67 (139)
+|||+|.|+||++++.||.+||+|+++||++|++|+++|+|+||+++++||+.+++|... .++..||
T Consensus 65 ~dGM~V~T~s~~v~~~Rk~vle~ll~~HpldC~~Cd~~geCeLQ~~a~~~gv~~~~~~~~~~~~~~~~~~~I~~D~~rCI 144 (819)
T PRK08493 65 KEGMNILTNTPNLMDERNAIMQTYDVNHPLECGVCDKSGECELQNFTHEMGVNHQPYAIKDTHKPHKHWGKINYDPSLCI 144 (819)
T ss_pred CCCCEEEecCHHHHHHHHHHHHHHHhccCCCCCcCCCCCCcHHHHHHHHhCCCCCcCccccccccccCCCcEEechhhcc
Confidence 589999999999999999999999999999999999999999999999999998877421 1122222
Q ss_pred -----------------------c------cccc-----------------------cceeecccCceecccCCcccccc
Q psy3842 68 -----------------------G------YLRE-----------------------KLFLSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 68 -----------------------~------t~~~-----------------------~~~~~~~~g~~~~~CPtgal~~~ 95 (139)
| ++++ ....|++||+|+++||||||+.+
T Consensus 145 ~C~RCVr~C~ev~g~~al~~~~RG~~~~~~~~~~~~~~da~~~~~~~~~~~i~~~~~~~~~C~~CG~Cv~VCPvGAL~~k 224 (819)
T PRK08493 145 VCERCVTVCKDKIGESALKTVPRGLDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDCSFCGECIAVCPVGALSSS 224 (819)
T ss_pred cccHHHhhCcccccchhhhhccCCcccccccccccccccchhhhhhcccceecccCCCcccccccCcHHHhCCCCccccC
Confidence 1 0111 13579999999999999999765
Q ss_pred -------eeeeccccccCCCCCCCCcchhHH
Q psy3842 96 -------EFLLVNHPLDCPICDQGGECDLQD 119 (139)
Q Consensus 96 -------e~~l~~~~~~C~~C~~g~~~eL~~ 119 (139)
.|.++..+++|++|++||+..++.
T Consensus 225 ~~~~~~~~wel~~v~TvCp~CsvGC~l~v~v 255 (819)
T PRK08493 225 DFQYTSNAWELKKIPATCPHCSDCCLIYYDV 255 (819)
T ss_pred ccccccCccccccccCcCCCCccCCCeEEEc
Confidence 466788999999999999998864
No 8
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=99.92 E-value=3.9e-25 Score=171.09 Aligned_cols=58 Identities=48% Similarity=0.978 Sum_probs=55.8
Q ss_pred CCCCEEEcCCHHHHHHHHHHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCCCcccc
Q psy3842 1 MKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFT 58 (139)
Q Consensus 1 ~~Gm~V~T~s~~v~~~r~~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~~ 58 (139)
+|||+|+|+||+|+++||.+|||||++||+||++|+++|+|+||+++++||+...+|.
T Consensus 135 ~eGM~V~T~Se~v~~~Rk~vLElLLs~Hp~DC~~C~k~G~CeLQdla~~~Gv~~~Rf~ 192 (297)
T PTZ00305 135 LPGMSIITDSRLVRDAREGNVELILINHPNDCPICEQATNCDLQNVSMNYGTDIPRYK 192 (297)
T ss_pred CCCCEEEeCCHHHHHHHHHHHHHHHhcCCCcCCcccCcCCcHHHHHHHHhCCCCccCC
Confidence 5899999999999999999999999999999999999999999999999999888874
No 9
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=99.91 E-value=6.1e-25 Score=185.56 Aligned_cols=122 Identities=25% Similarity=0.434 Sum_probs=97.6
Q ss_pred CCCCEEEcCCHHHHHHHHHHHHHHHHhCCCCCCCcCCC-CcchhHHHHHHhCCCCccccccc---------------cCC
Q psy3842 1 MKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQG-GECDLQDQSMAFGSDRSRFTDID---------------FSG 64 (139)
Q Consensus 1 ~~Gm~V~T~s~~v~~~r~~~lelll~~h~~~C~~C~~~-g~C~Lq~l~~~~g~~~~r~~~~~---------------~~~ 64 (139)
++||+|+|+|++++++|+.+|++||++|+++|++|+.+ |+|+||+++..+|+.+++|.... |+.
T Consensus 69 ~dGm~v~t~s~rvk~~r~~~md~~l~nH~LyC~vCd~nnGdCelh~~~~~~gl~~q~y~y~~k~~~~~~Des~Pfy~ydp 148 (978)
T COG3383 69 EDGMVVRTNSERVKEARREAMDRILSNHPLYCTVCDNNNGDCELHNMVMALGLTEQRYPYEEKNPPYPKDESNPFYIYDP 148 (978)
T ss_pred cCCcEEecccHHHHHHHHHHHHHHHhcCCcCccccCCCCCCchHHHHHHHhCCCccccCccccCCCCCcccCCCeEEecc
Confidence 58999999999999999999999999999999999988 99999999999999988764211 233
Q ss_pred Ccc--------------ccc-------------c---c---cceeecccCceecccCCcccccceee-------------
Q psy3842 65 KRW--------------GYL-------------R---E---KLFLSELSGKRESTCAPAREGVMEFL------------- 98 (139)
Q Consensus 65 ~r~--------------~t~-------------~---~---~~~~~~~~g~~~~~CPtgal~~~e~~------------- 98 (139)
.+| ++. + + .-..|++||.|+.|||++||+.+.++
T Consensus 149 ~qCIlCgRCVeaCqevqv~eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~nALmek~m~g~ag~~t~~~~~~ 228 (978)
T COG3383 149 NQCILCGRCVEACQEVQVNEALTIDWRGEDPRVIWDNDVPINESSCVSCGACVTVCPVNALMEKSMLGEAGYLTGINEDT 228 (978)
T ss_pred hheeehhHHHHHHHhhhceeEEEeecccCCcceecCCCCccccccccccCccceecchhhhhhhhhhccccccccccchh
Confidence 322 111 1 1 12378999999999999999866543
Q ss_pred --------------------------------eccccccCCCCCCCCcchhHHHHH
Q psy3842 99 --------------------------------LVNHPLDCPICDQGGECDLQDQSM 122 (139)
Q Consensus 99 --------------------------------l~~~~~~C~~C~~g~~~eL~~~~~ 122 (139)
++...++|+||++||+.+++....
T Consensus 229 ~~~mid~~k~~eP~~~~~~ais~~e~~mr~~rikktkTvC~yCGvGCsf~vwtkgr 284 (978)
T COG3383 229 LEPMIDLVKKVEPEYGPIFAISEIEAAMRETRIKKTKTVCTYCGVGCSFEVWTKGR 284 (978)
T ss_pred hhhhhhhhhccCCCcccchhhhhhhhhhhhhhhcccceeccccCCceeEEEEecCc
Confidence 234567999999999999977554
No 10
>KOG2282|consensus
Probab=99.90 E-value=9.7e-25 Score=178.09 Aligned_cols=133 Identities=52% Similarity=0.835 Sum_probs=104.1
Q ss_pred CCCCEEEcCCHHHHHHHHHHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCCCcccccccc------------------
Q psy3842 1 MKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDF------------------ 62 (139)
Q Consensus 1 ~~Gm~V~T~s~~v~~~r~~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~~~~~~------------------ 62 (139)
..||.|.|||+.++++|.++|||||.|||+|||.|++.|+|+|||.+..+|.++.||.+...
T Consensus 98 m~g~~iktns~~~kkaregvmefll~nhpldcpicdqggecdlqdq~m~fgsdr~rf~~~kravedknigplvktimtrc 177 (708)
T KOG2282|consen 98 MKGWKIKTNSDKSKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQAMAFGSDRSRFTEGKRAVEDKNIGPLVKTIMTRC 177 (708)
T ss_pred cCCceeecCchHHHHHHHHHHHHHHhCCCCCCCccCCCCcCcchHhHhhhcCchhhhhhhhhhhhcCccchHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999965310
Q ss_pred -CCCcc------------------------ccccccceeecccCceecccCCcccccceeeeccccc-------cCCCCC
Q psy3842 63 -SGKRW------------------------GYLREKLFLSELSGKRESTCAPAREGVMEFLLVNHPL-------DCPICD 110 (139)
Q Consensus 63 -~~~r~------------------------~t~~~~~~~~~~~g~~~~~CPtgal~~~e~~l~~~~~-------~C~~C~ 110 (139)
...|| |||++.++.++.+|+.+++||+|||+++.+-+...|+ .=..-.
T Consensus 178 iqctrcvrfaseiagv~dlgttgrg~d~qigtyvek~f~selsgniidicpvgaltskpyaf~arpwe~rktesidv~da 257 (708)
T KOG2282|consen 178 IQCTRCVRFASEIAGVDDLGTTGRGNDMQIGTYVEKLFMSELSGNIIDICPVGALTSKPYAFTARPWETRKTESIDVMDA 257 (708)
T ss_pred HhHHHHHHHHHhhcCCcccccccCCCcchHHHHHHHHHHHhhcCCeeeeccccccccCcceeeccccccccccceehhhh
Confidence 00111 7889999999999999999999999987765544443 223344
Q ss_pred CCCcchh---------------HHHHHHhCCCCCCCCC
Q psy3842 111 QGGECDL---------------QDQSMAFGSDRSRFTD 133 (139)
Q Consensus 111 ~g~~~eL---------------~~~~~~~gv~~~rf~~ 133 (139)
+|.+..+ .+...+|..+.+||.+
T Consensus 258 vgsnivvs~rt~ev~ri~pr~nedineewi~dksrfa~ 295 (708)
T KOG2282|consen 258 VGSNIVVSTRTGEVLRILPRMNEDINEEWISDKSRFAY 295 (708)
T ss_pred ccCcEEEecCCccceeeccccccccchhhhcccceeee
Confidence 5554443 2244567777778754
No 11
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=99.84 E-value=3.2e-21 Score=146.85 Aligned_cols=58 Identities=31% Similarity=0.604 Sum_probs=54.9
Q ss_pred CCCCEEEcCCHHHHHHHHHHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCCCcccc
Q psy3842 1 MKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFT 58 (139)
Q Consensus 1 ~~Gm~V~T~s~~v~~~r~~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~~ 58 (139)
++||+|.|+|++++++||.+|++|+++||++|++|+++|+|+||+++.+||+...+|.
T Consensus 69 ~~Gm~v~t~~~~~~~~rk~~l~~ll~~h~~~C~~C~~~g~C~Lq~~a~~~g~~~~~~~ 126 (234)
T PRK07569 69 AEGMVVQTNTPRLQEYRRMIVELLFAEGNHVCAVCVANGNCELQDLAIEVGMDHVRFP 126 (234)
T ss_pred CCCCEEEECCHHHHHHHHHHHHHHHHhccccCcccCCCCCcHHHHHHHHhCCCCcccC
Confidence 5899999999999999999999999999999999999999999999999999876653
No 12
>PF10588 NADH-G_4Fe-4S_3: NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; InterPro: IPR019574 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the G subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain related subunits from formate dehydrogenase complexes. This entry represents the iron-sulphur binding domain of the G subunit.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3.
Probab=99.72 E-value=3.8e-18 Score=96.61 Aligned_cols=41 Identities=56% Similarity=1.191 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCCCccc
Q psy3842 17 REGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 57 (139)
Q Consensus 17 r~~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~ 57 (139)
||.+|||||++||++|++|+++|+|+||++++++|+...+|
T Consensus 1 Rr~~lelll~~H~~dC~~C~~~G~CeLQ~~~~~~gv~~~~f 41 (41)
T PF10588_consen 1 RRTVLELLLANHPLDCPTCDKNGNCELQDLAYEYGVDEQRF 41 (41)
T ss_dssp -HHHHHHHHTT----TTT-TTGGG-HHHHHHHHH-S-----
T ss_pred CHHHHHHHHhCCCCcCcCCCCCCCCHHHHHHHHhCCCcCCC
Confidence 89999999999999999999999999999999999988775
No 13
>PF10588 NADH-G_4Fe-4S_3: NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; InterPro: IPR019574 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the G subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain related subunits from formate dehydrogenase complexes. This entry represents the iron-sulphur binding domain of the G subunit.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3.
Probab=99.07 E-value=2.1e-11 Score=68.89 Aligned_cols=40 Identities=55% Similarity=1.182 Sum_probs=26.2
Q ss_pred cccceeeeccccccCCCCCCCCcchhHHHHHHhCCCCCCC
Q psy3842 92 EGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 131 (139)
Q Consensus 92 l~~~e~~l~~~~~~C~~C~~g~~~eL~~~~~~~gv~~~rf 131 (139)
+++++++|++||..|+.|+++++|+||+++.++|++..||
T Consensus 2 r~~lelll~~H~~dC~~C~~~G~CeLQ~~~~~~gv~~~~f 41 (41)
T PF10588_consen 2 RTVLELLLANHPLDCPTCDKNGNCELQDLAYEYGVDEQRF 41 (41)
T ss_dssp HHHHHHHHTT----TTT-TTGGG-HHHHHHHHH-S-----
T ss_pred HHHHHHHHhCCCCcCcCCCCCCCCHHHHHHHHhCCCcCCC
Confidence 4578899999999999999999999999999999998887
No 14
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=99.05 E-value=2.8e-11 Score=103.95 Aligned_cols=89 Identities=40% Similarity=0.759 Sum_probs=77.3
Q ss_pred CcchhHHHHHHhCCCCccccccccCCCc-----cccc-cccceeecccCceecccCCcccccceeeeccccccCCCCCCC
Q psy3842 39 GECDLQDQSMAFGSDRSRFTDIDFSGKR-----WGYL-REKLFLSELSGKRESTCAPAREGVMEFLLVNHPLDCPICDQG 112 (139)
Q Consensus 39 g~C~Lq~l~~~~g~~~~r~~~~~~~~~r-----~~t~-~~~~~~~~~~g~~~~~CPtgal~~~e~~l~~~~~~C~~C~~g 112 (139)
-.|+|.++. .+|.|+.|++++ ++.+ |.|. .++|.+.+.+.+... .+..++||+|.+||.+||.|..|
T Consensus 32 ~fCyh~~ls-~~GaCRmClVEv--eg~~k~~~SC~tpv~dGM~I~T~s~~vk~----~R~~vmE~LLiNHPlDCpiCD~g 104 (693)
T COG1034 32 TFCYHPRLS-IAGACRMCLVEV--EGAPKLVASCATPVTDGMVISTNSEEVKK----AREGVMEFLLINHPLDCPVCDKG 104 (693)
T ss_pred cccccCCCC-cccceeEEEEEe--cCCCccccccccccCCCeEEecCCHHHHH----HHHHHHHHHHhcCCCCCCccCCC
Confidence 368999988 889999999988 4532 1333 479999999999998 88999999999999999999999
Q ss_pred CcchhHHHHHHhCCCCCCCCCC
Q psy3842 113 GECDLQDQSMAFGSDRSRFTDI 134 (139)
Q Consensus 113 ~~~eL~~~~~~~gv~~~rf~~~ 134 (139)
|+|+||++++.+|++.+||.+.
T Consensus 105 GeCeLQD~a~~~G~~~sr~~~~ 126 (693)
T COG1034 105 GECELQDLAVKYGVSHSRYRET 126 (693)
T ss_pred CCchhHHHHHHhCCCccccccc
Confidence 9999999999999999998654
No 15
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=99.01 E-value=6.1e-11 Score=92.38 Aligned_cols=89 Identities=34% Similarity=0.564 Sum_probs=76.4
Q ss_pred CcchhHHHHHHhCCCCccccccccCCCcc-----ccc-cccceeecccCceecccCCcccccceeeeccccccCCCCCCC
Q psy3842 39 GECDLQDQSMAFGSDRSRFTDIDFSGKRW-----GYL-REKLFLSELSGKRESTCAPAREGVMEFLLVNHPLDCPICDQG 112 (139)
Q Consensus 39 g~C~Lq~l~~~~g~~~~r~~~~~~~~~r~-----~t~-~~~~~~~~~~g~~~~~CPtgal~~~e~~l~~~~~~C~~C~~g 112 (139)
..|++.++. .+|.++.|++++ +|.+. .|. .++|.+.|.+.+... .++..++++|++||.+|+.|.++
T Consensus 100 tLCy~~~L~-p~G~CRlClVEV--eG~~~lv~AC~tpV~eGM~V~T~Se~v~~----~Rk~vLElLLs~Hp~DC~~C~k~ 172 (297)
T PTZ00305 100 KFCYHPILS-VAGNCRMCLVQV--DGTQNLVVSCATVALPGMSIITDSRLVRD----AREGNVELILINHPNDCPICEQA 172 (297)
T ss_pred ccccCCCCC-CCCccceeEEEE--CCCcCcccccCCcCCCCCEEEeCCHHHHH----HHHHHHHHHHhcCCCcCCcccCc
Confidence 467887776 689999999887 45532 333 579999999999999 88999999999999999999999
Q ss_pred CcchhHHHHHHhCCCCCCCCCC
Q psy3842 113 GECDLQDQSMAFGSDRSRFTDI 134 (139)
Q Consensus 113 ~~~eL~~~~~~~gv~~~rf~~~ 134 (139)
++|+||+++.++|++..||+..
T Consensus 173 G~CeLQdla~~~Gv~~~Rf~~~ 194 (297)
T PTZ00305 173 TNCDLQNVSMNYGTDIPRYKED 194 (297)
T ss_pred CCcHHHHHHHHhCCCCccCCcc
Confidence 9999999999999999898653
No 16
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=98.87 E-value=4.9e-10 Score=96.94 Aligned_cols=88 Identities=48% Similarity=0.804 Sum_probs=75.8
Q ss_pred cchhHHHHHHhCCCCccccccccCCC-c-----cccc-cccceeecccCceecccCCcccccceeeeccccccCCCCCCC
Q psy3842 40 ECDLQDQSMAFGSDRSRFTDIDFSGK-R-----WGYL-REKLFLSELSGKRESTCAPAREGVMEFLLVNHPLDCPICDQG 112 (139)
Q Consensus 40 ~C~Lq~l~~~~g~~~~r~~~~~~~~~-r-----~~t~-~~~~~~~~~~g~~~~~CPtgal~~~e~~l~~~~~~C~~C~~g 112 (139)
.|++.+|. ..|.|+.|++++ ++. + |.|. .++|.+.|.+.++.. .+..++|++|.+||.+|+.|..+
T Consensus 33 lCy~~~l~-~~g~Cr~ClVev--~~~~~~~~~sC~~~v~~gm~v~T~s~~v~~----~r~~~le~ll~~Hp~dC~~C~~~ 105 (687)
T PRK09130 33 FCYHERLS-IAGNCRMCLVEV--KGGPPKPVASCAMPVGEGMVIFTNTPMVKK----AREGVMEFLLINHPLDCPICDQG 105 (687)
T ss_pred ccCCCCCC-CCCCCCCCEEEE--CCCCCCcccccCCCCCCCCEEEeCCHHHHH----HHHHHHHHHHhcCCCCCCCCCCC
Confidence 67888876 679999999887 343 2 1333 579999999999999 88999999999999999999999
Q ss_pred CcchhHHHHHHhCCCCCCCCCC
Q psy3842 113 GECDLQDQSMAFGSDRSRFTDI 134 (139)
Q Consensus 113 ~~~eL~~~~~~~gv~~~rf~~~ 134 (139)
++|+||++++.||++..||.+.
T Consensus 106 g~C~Lq~~~~~~g~~~~r~~~~ 127 (687)
T PRK09130 106 GECDLQDQAMAYGVDTSRYHEN 127 (687)
T ss_pred CCCHHHHHHHHhCCCCCCCCcc
Confidence 9999999999999999999754
No 17
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=98.73 E-value=5.2e-09 Score=89.34 Aligned_cols=103 Identities=45% Similarity=0.662 Sum_probs=82.2
Q ss_pred HHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCCCccccccccCCCc--c----ccc-cccceeecccCceecccCCcc
Q psy3842 19 GVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFSGKR--W----GYL-REKLFLSELSGKRESTCAPAR 91 (139)
Q Consensus 19 ~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~~~~~~~~~r--~----~t~-~~~~~~~~~~g~~~~~CPtga 91 (139)
.+|+.++...-. -...|++.++. ..|.|+.|++++ +|.+ - .|. .++|.+.|.+.+... .+
T Consensus 15 ~il~a~~~~gi~------ip~~C~~~~l~-~~g~Cr~C~v~v--~g~~~~~~~aC~~~~~~gm~v~t~~~~~~~----~r 81 (603)
T TIGR01973 15 TVLQACLSAGIE------IPRFCYHEKLS-IAGNCRMCLVEV--EKFPDKPVASCATPVTDGMKISTNSEKVKK----AR 81 (603)
T ss_pred HHHHHHHHcCCC------ccccCCCCCCC-CCCccccCEEEE--CCCCCCcccccCCCCCCCCEEEeCCHHHHH----HH
Confidence 466666664321 12367887776 589999999887 3431 1 333 479999999999988 88
Q ss_pred cccceeeeccccccCCCCCCCCcchhHHHHHHhCCCCCCCCCC
Q psy3842 92 EGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDI 134 (139)
Q Consensus 92 l~~~e~~l~~~~~~C~~C~~g~~~eL~~~~~~~gv~~~rf~~~ 134 (139)
+.+++++|.+||.+|+.|..+++|+||+++..||++..||.+.
T Consensus 82 ~~~~e~ll~~h~~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~ 124 (603)
T TIGR01973 82 EGVMEFLLINHPLDCPICDQGGECDLQDQAVMYGSDRSRFREK 124 (603)
T ss_pred HHHHHHHHhcCCCCCCcCCCCCCChHHHHHHHhCCCCCCCCcc
Confidence 9999999999999999999999999999999999999998753
No 18
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=98.69 E-value=7.1e-09 Score=90.75 Aligned_cols=103 Identities=35% Similarity=0.529 Sum_probs=81.0
Q ss_pred HHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCCCccccccccCCCc-----ccc-ccccceeecccCceecccCCccc
Q psy3842 19 GVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFSGKR-----WGY-LREKLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 19 ~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~~~~~~~~~r-----~~t-~~~~~~~~~~~g~~~~~CPtgal 92 (139)
.+|+.+...+-.- ...|+..++. ..|.|+.|.+++ +|.+ |.| ..++|.+.+.+.+..+ .++
T Consensus 18 ~il~a~~~~g~~i------p~~c~~~~~~-~~~~C~~C~v~v--~~~~~~~~aC~~~~~~gm~v~t~~~~~~~----~r~ 84 (776)
T PRK09129 18 MVIEAADKAGIYI------PRFCYHKKLS-IAANCRMCLVEV--EKAPKPLPACATPVTDGMKVFTRSEKALK----AQK 84 (776)
T ss_pred HHHHHHHHcCCCC------CcccCCCCCC-CCCCcceeEEEE--CCCCCcCcccCCCCCCCCEEEcCCHHHHH----HHH
Confidence 4666666654221 1356666654 678899999887 3432 123 3579999999999999 889
Q ss_pred ccceeeeccccccCCCCCCCCcchhHHHHHHhCCCCCCCCCC
Q psy3842 93 GVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDI 134 (139)
Q Consensus 93 ~~~e~~l~~~~~~C~~C~~g~~~eL~~~~~~~gv~~~rf~~~ 134 (139)
.+++++|++||.+|+.|..+++|+||+++.+||++..||.+.
T Consensus 85 ~~l~~ll~~h~~~C~~c~~~g~C~Lq~~a~~~g~~~~~~~~~ 126 (776)
T PRK09129 85 SVMEFLLINHPLDCPICDQGGECQLQDLAVGYGRSTSRYTEE 126 (776)
T ss_pred HHHHHHHhcCCCCcccCCCCCCCHHHHHHHHhCCCCCccccc
Confidence 999999999999999999999999999999999999998653
No 19
>PRK08764 ferredoxin; Provisional
Probab=98.64 E-value=6.9e-08 Score=67.89 Aligned_cols=71 Identities=10% Similarity=-0.017 Sum_probs=50.7
Q ss_pred HHHHHhCCCCCCCcCCCCcchhHHHHHHhCCCCccccccccCCCcccccc--ccceeecccCceecccCCccccc
Q psy3842 22 EFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFSGKRWGYLR--EKLFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 22 elll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~~~~~~~~~r~~t~~--~~~~~~~~~g~~~~~CPtgal~~ 94 (139)
...+++|.++|..|+++|+|+||++++.+|+...+|... .+.+....+ -.-..|+.|+.|+.+||++++..
T Consensus 32 a~~~v~g~~~~~~C~~~G~c~lq~~a~~~gv~~~~~~~~--~~~~~~~~~~~~~~~~Ci~C~~Cv~aCp~~ai~~ 104 (135)
T PRK08764 32 AQAMARGEATIDRCPPGGDAGARALAQVLGVPARPYDRS--RGTHKLPQVAWIVEADCIGCTKCIQACPVDAIVG 104 (135)
T ss_pred HHHHHcCCCCCCCCCCCCHHHHHHHHHHhCCCccccccc--cCCCCCCeeEEECcccCcCcchHHHhCChhhcCc
Confidence 345569999999999999999999999999987665432 111110100 01136789999999999998754
No 20
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=98.61 E-value=8.8e-09 Score=90.53 Aligned_cols=87 Identities=43% Similarity=0.786 Sum_probs=72.7
Q ss_pred cchhHHHHHHhCCCCccccccccCCCc-----cccc-cccceeecc--cCceecccCCcccccceeeeccccccCCCCCC
Q psy3842 40 ECDLQDQSMAFGSDRSRFTDIDFSGKR-----WGYL-REKLFLSEL--SGKRESTCAPAREGVMEFLLVNHPLDCPICDQ 111 (139)
Q Consensus 40 ~C~Lq~l~~~~g~~~~r~~~~~~~~~r-----~~t~-~~~~~~~~~--~g~~~~~CPtgal~~~e~~l~~~~~~C~~C~~ 111 (139)
.|++.++. ..|.|+.|.+++ +|.+ |.|. .++|.+.+. +.+..+ .++.+++++|.+||.+|+.|..
T Consensus 36 ~C~~~~l~-~~g~Cr~C~Vev--~g~~~~~~aC~t~v~~gm~V~t~~~s~~v~~----~r~~~le~ll~~hp~dC~~C~~ 108 (797)
T PRK07860 36 FCDHPLLD-PVGACRQCLVEV--EGQRKPQASCTTTVTDGMVVKTQLTSPVADK----AQHGVMELLLINHPLDCPVCDK 108 (797)
T ss_pred ecCCCCCC-CCcccCccEEEE--CCCcccccccCCCCCCCcEEEeCCCCHHHHH----HHHHHHHHHHhcCCCCCCCCCC
Confidence 57776665 689999999887 4432 1233 579999887 788888 8899999999999999999999
Q ss_pred CCcchhHHHHHHhCCCCCCCCC
Q psy3842 112 GGECDLQDQSMAFGSDRSRFTD 133 (139)
Q Consensus 112 g~~~eL~~~~~~~gv~~~rf~~ 133 (139)
+++|+||+++..+|+...||.+
T Consensus 109 ~g~C~Lq~~~~~~g~~~~~~~~ 130 (797)
T PRK07860 109 GGECPLQNQAMSNGRAESRFTD 130 (797)
T ss_pred CCCcHHHHHHHHhCCCCccCcc
Confidence 9999999999999999888864
No 21
>KOG2282|consensus
Probab=98.52 E-value=2.6e-08 Score=82.66 Aligned_cols=58 Identities=74% Similarity=1.234 Sum_probs=48.0
Q ss_pred ccceeecccCceecccCCcccccceeeeccccccCCCCCCCCcchhHHHHHHhCCCCCCCCC
Q psy3842 72 EKLFLSELSGKRESTCAPAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTD 133 (139)
Q Consensus 72 ~~~~~~~~~g~~~~~CPtgal~~~e~~l~~~~~~C~~C~~g~~~eL~~~~~~~gv~~~rf~~ 133 (139)
.+|.+-|.+..... .+..++||+|.+||.+||.|..|+.|.||++++.||.+++||.+
T Consensus 99 ~g~~iktns~~~kk----aregvmefll~nhpldcpicdqggecdlqdq~m~fgsdr~rf~~ 156 (708)
T KOG2282|consen 99 KGWKIKTNSDKSKK----AREGVMEFLLMNHPLDCPICDQGGECDLQDQAMAFGSDRSRFTE 156 (708)
T ss_pred CCceeecCchHHHH----HHHHHHHHHHhCCCCCCCccCCCCcCcchHhHhhhcCchhhhhh
Confidence 34555565554444 45578899999999999999999999999999999999999964
No 22
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=98.49 E-value=6.2e-08 Score=73.88 Aligned_cols=102 Identities=24% Similarity=0.402 Sum_probs=75.2
Q ss_pred HHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCCCccccccccCCCcc-----ccc-cccceeecccCceecccCCccc
Q psy3842 19 GVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFSGKRW-----GYL-REKLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 19 ~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~~~~~~~~~r~-----~t~-~~~~~~~~~~g~~~~~CPtgal 92 (139)
.+|+.++... ..-| ..|.+.++. ..|.+..+.+++ +|++. .|. .++|.+.+...+... -+.
T Consensus 20 til~a~~~~g-i~ip-----~~C~~~~~~-~~G~C~~C~V~v--~g~~~~~~aC~t~v~~Gm~v~t~~~~~~~----~rk 86 (234)
T PRK07569 20 TLLEAAREAG-IPIP-----TLCHLDGLS-DVGACRLCLVEI--EGSNKLLPACVTPVAEGMVVQTNTPRLQE----YRR 86 (234)
T ss_pred HHHHHHHHcC-CCCC-----cCcCCCCCC-CCCccCCcEEEE--CCCCccccCcCCCCCCCCEEEECCHHHHH----HHH
Confidence 4666666543 1111 124444443 567788888776 45421 233 479999999888888 788
Q ss_pred ccceeeeccccccCCCCCCCCcchhHHHHHHhCCCCCCCCC
Q psy3842 93 GVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTD 133 (139)
Q Consensus 93 ~~~e~~l~~~~~~C~~C~~g~~~eL~~~~~~~gv~~~rf~~ 133 (139)
..+++++++||.+|+.|+.+++|+||+++.++|+...+|.+
T Consensus 87 ~~l~~ll~~h~~~C~~C~~~g~C~Lq~~a~~~g~~~~~~~~ 127 (234)
T PRK07569 87 MIVELLFAEGNHVCAVCVANGNCELQDLAIEVGMDHVRFPY 127 (234)
T ss_pred HHHHHHHHhccccCcccCCCCCcHHHHHHHHhCCCCcccCc
Confidence 89999999999999999999999999999999998777753
No 23
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=98.47 E-value=6.2e-08 Score=85.20 Aligned_cols=102 Identities=25% Similarity=0.387 Sum_probs=79.3
Q ss_pred HHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCCCccccccccCCCcc---ccc-cccceeecccCceecccCCccccc
Q psy3842 19 GVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFSGKRW---GYL-REKLFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 19 ~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~~~~~~~~~r~---~t~-~~~~~~~~~~g~~~~~CPtgal~~ 94 (139)
.+|+.+..+.-.. ...|++.++. ..|.|+.|.+++ +|++. .|. .++|.+.+.+.+... .++.+
T Consensus 18 til~aa~~~gi~i------P~lC~~~~~~-~~G~Cr~C~VeV--~G~~~~AC~t~v~dGM~V~T~s~~v~~----~Rk~v 84 (819)
T PRK08493 18 YILNVARRNGIFI------PAICYLSGCS-PTLACRLCMVEA--DGKRVYSCNTKAKEGMNILTNTPNLMD----ERNAI 84 (819)
T ss_pred HHHHHHHHcCCcc------ccccccCCCC-CCccccceEEEE--CCEEeccccCCCCCCCEEEecCHHHHH----HHHHH
Confidence 4666665543221 1346555554 578899999887 56532 333 579999999999988 78999
Q ss_pred ceeeeccccccCCCCCCCCcchhHHHHHHhCCCCCCCCC
Q psy3842 95 MEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTD 133 (139)
Q Consensus 95 ~e~~l~~~~~~C~~C~~g~~~eL~~~~~~~gv~~~rf~~ 133 (139)
+++++.+||..|++|..+++|+||+++.++|++..||..
T Consensus 85 le~ll~~HpldC~~Cd~~geCeLQ~~a~~~gv~~~~~~~ 123 (819)
T PRK08493 85 MQTYDVNHPLECGVCDKSGECELQNFTHEMGVNHQPYAI 123 (819)
T ss_pred HHHHHhccCCCCCcCCCCCCcHHHHHHHHhCCCCCcCcc
Confidence 999999999999999999999999999999999988864
No 24
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=98.38 E-value=1.6e-07 Score=83.14 Aligned_cols=89 Identities=27% Similarity=0.461 Sum_probs=68.3
Q ss_pred cchhHHHHHHhCCCCccccccc---cCCCc-----ccc-ccccceeecccCceecccCCcccccceeeeccccccCCCCC
Q psy3842 40 ECDLQDQSMAFGSDRSRFTDID---FSGKR-----WGY-LREKLFLSELSGKRESTCAPAREGVMEFLLVNHPLDCPICD 110 (139)
Q Consensus 40 ~C~Lq~l~~~~g~~~~r~~~~~---~~~~r-----~~t-~~~~~~~~~~~g~~~~~CPtgal~~~e~~l~~~~~~C~~C~ 110 (139)
.|+..++. ..|.|+.|.+++. .++.. |.+ ..++|.+.+.+.+... .+..++||+|.+||.+|+.|.
T Consensus 33 ~C~~~~~~-~~G~C~~C~v~v~~g~~~~~~~~~~aC~~~v~~gm~v~t~~~~~~~----~r~~~~e~ll~~hp~dc~~c~ 107 (847)
T PRK08166 33 FCWHPALG-SVGACRQCAVKQYQNPEDTRGRLVMSCMTPATDGTFISIDDPEAKA----FRASVVEWLMTNHPHDCPVCE 107 (847)
T ss_pred cccCCCCC-CCCccCCCeEEEeecCccCCCCcccCcCCCCCCCCEEEeCCHHHHH----HHHHHHHHHHhcCCCCCCccC
Confidence 35555554 5788888877651 11111 122 2468988888887777 778899999999999999999
Q ss_pred CCCcchhHHHHHHhCCCCCCCCC
Q psy3842 111 QGGECDLQDQSMAFGSDRSRFTD 133 (139)
Q Consensus 111 ~g~~~eL~~~~~~~gv~~~rf~~ 133 (139)
.+++|+||+++.++|+...||.+
T Consensus 108 ~~g~c~lq~~~~~~g~~~~~~~~ 130 (847)
T PRK08166 108 EGGNCHLQDMTVMTGHSFRRYRF 130 (847)
T ss_pred CCCCchHHHHHHHhCCCCccCCC
Confidence 99999999999999999888864
No 25
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=98.27 E-value=2.9e-07 Score=79.46 Aligned_cols=101 Identities=28% Similarity=0.512 Sum_probs=81.1
Q ss_pred HHHHHHHHHh---CCCCCCCcCCCCcchhHHHHHHhCCCCccccccccCCC--c-cccc-cccceeecccCceecccCCc
Q psy3842 18 EGVMEFLLVN---HPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFSGK--R-WGYL-REKLFLSELSGKRESTCAPA 90 (139)
Q Consensus 18 ~~~lelll~~---h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~~~~~~~~~--r-~~t~-~~~~~~~~~~g~~~~~CPtg 90 (139)
..||+.++.+ +|+ .|+-..+- .++.|+.|++++ +|+ | |.|. .++|.+.+.+.+..+ .
T Consensus 21 ~tiL~a~~~~gI~iP~---------iCy~~~l~-pi~sCd~ClVEi--dG~l~rsCsT~v~dGm~v~t~s~rvk~----~ 84 (978)
T COG3383 21 TTILRAANRNGIEIPH---------ICYHESLG-PIGSCDTCLVEI--DGKLVRSCSTPVEDGMVVRTNSERVKE----A 84 (978)
T ss_pred hHHHHHHHhcCCcccc---------eeccCCCC-cccccceEEEEe--cCceeccccccccCCcEEecccHHHHH----H
Confidence 4577777775 554 35554444 778888999887 564 2 2444 469999999999988 8
Q ss_pred ccccceeeeccccccCCCCCCC-CcchhHHHHHHhCCCCCCCCCC
Q psy3842 91 REGVMEFLLVNHPLDCPICDQG-GECDLQDQSMAFGSDRSRFTDI 134 (139)
Q Consensus 91 al~~~e~~l~~~~~~C~~C~~g-~~~eL~~~~~~~gv~~~rf~~~ 134 (139)
++.+++++|++|+..|+.|..+ |+|+||+++..+|+...||++.
T Consensus 85 r~~~md~~l~nH~LyC~vCd~nnGdCelh~~~~~~gl~~q~y~y~ 129 (978)
T COG3383 85 RREAMDRILSNHPLYCTVCDNNNGDCELHNMVMALGLTEQRYPYE 129 (978)
T ss_pred HHHHHHHHHhcCCcCccccCCCCCCchHHHHHHHhCCCccccCcc
Confidence 8899999999999999999998 9999999999999999887654
No 26
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.03 E-value=6.8e-06 Score=71.01 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=32.0
Q ss_pred CCCCEEEcCCHHHHHHHHHHHHHHHHhCCCCCC
Q psy3842 1 MKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCP 33 (139)
Q Consensus 1 ~~Gm~V~T~s~~v~~~r~~~lelll~~h~~~C~ 33 (139)
+|||+|.|+||++.++|+.+||+||++|+.+|.
T Consensus 69 ~~Gm~v~t~~~~~~~~r~~~le~l~~~~c~~C~ 101 (652)
T PRK12814 69 SEGMVIETENAELHAMRRQSLERLIEQHCGDCL 101 (652)
T ss_pred CCCCEEEeCcHHHHHHHHHHHHHHHhhcccccC
Confidence 589999999999999999999999999999997
No 27
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=97.89 E-value=8.1e-06 Score=60.60 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=23.0
Q ss_pred CCCCcCCCCcchhHHHHHHhCCCCccc
Q psy3842 31 DCPICDQGGECDLQDQSMAFGSDRSRF 57 (139)
Q Consensus 31 ~C~~C~~~g~C~Lq~l~~~~g~~~~r~ 57 (139)
.-..|+++|+|+||++++.+|+...++
T Consensus 69 ~~~~C~~~G~c~lq~la~~~Gv~~~~~ 95 (191)
T PRK05113 69 KINKCPPGGEATMLKLAELLGVEPQPL 95 (191)
T ss_pred CcCcCCCCchHHHHHHHHHhCCCcccC
Confidence 455788999999999999999976665
No 28
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.84 E-value=1.1e-05 Score=69.63 Aligned_cols=53 Identities=17% Similarity=0.093 Sum_probs=37.2
Q ss_pred CCCCcC--CCCcchhHHHHHHhCCCCccccccccCC--Cccccc-cccceeecccCcee
Q psy3842 31 DCPICD--QGGECDLQDQSMAFGSDRSRFTDIDFSG--KRWGYL-REKLFLSELSGKRE 84 (139)
Q Consensus 31 ~C~~C~--~~g~C~Lq~l~~~~g~~~~r~~~~~~~~--~r~~t~-~~~~~~~~~~g~~~ 84 (139)
+|+.|. ++++|+||+++++||+...+|....... .. ..+ .-.+..|..||+|+
T Consensus 568 ~~~~~~C~~~~~C~Lq~~a~~~~~~~~~~~~~~~~~~~~~-~~~i~~D~~kCI~CgrCv 625 (652)
T PRK12814 568 RCLRCRCNAVDDCRLRDLATRYLPDTPCKEEEHEGFSITR-NGDIRFEREKCVDCGICV 625 (652)
T ss_pred HhhhhhcCCCCCChhHHHHHHhCCCcccccccccCccccC-CCCeEeccccccCchHHH
Confidence 466665 7899999999999999988885421000 00 122 23567899999999
No 29
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=97.72 E-value=3.4e-05 Score=55.91 Aligned_cols=66 Identities=11% Similarity=-0.116 Sum_probs=44.7
Q ss_pred hCCCCCCCcCCCCcchhHHHHHHhCCCCccccccccC---CCccccccccceeecccCceecccCCccccc
Q psy3842 27 NHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFS---GKRWGYLREKLFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 27 ~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~~~~~~~---~~r~~t~~~~~~~~~~~g~~~~~CPtgal~~ 94 (139)
+|+. ...|.++|+|+||++++.+|+...++...... ..+ ....-....|..||.|+.+||++++..
T Consensus 64 ~~~~-i~~C~~~g~c~l~~~a~~~gv~~~~~~~~~~~~~~~~~-~~~~id~~~Ci~Cg~C~~aCp~~ai~~ 132 (165)
T TIGR01944 64 EGEA-INKCPPGGEAVILALAELLGVEPIPQPLDADAGTIQPP-MVALIDEDNCIGCTKCIQACPVDAIVG 132 (165)
T ss_pred cCCC-cCcCccccHHHHHHHHHHcCCCcccCCccccccccCCC-ceEEEECCcCCChhHHHHhCCccceEe
Confidence 5655 77899999999999999999987765321000 000 001112336788999999999998654
No 30
>PRK06991 ferredoxin; Provisional
Probab=97.50 E-value=0.0001 Score=57.50 Aligned_cols=68 Identities=12% Similarity=0.036 Sum_probs=45.8
Q ss_pred HHhCCCCCCCcCCCCcchhHHHHHHhCCCCccccccccCCC-cc-ccccccceeecccCceecccCCccccc
Q psy3842 25 LVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFSGK-RW-GYLREKLFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 25 l~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~~~~~~~~~-r~-~t~~~~~~~~~~~g~~~~~CPtgal~~ 94 (139)
+.++..+|..|..+|.|.++.++..+|.....+... .+. +. +...-....|+.||.|+.+||++++..
T Consensus 35 Ia~Gea~~n~Cp~gG~~gi~~la~llG~~~~~~~p~--~~~~~~~~~~~id~~~CigCg~Cv~aCP~~AI~~ 104 (270)
T PRK06991 35 IAAGEANYNRCPPGGAEGIARLAALLGKPVIPLDPA--NGVERPRAVAVIDEQLCIGCTLCMQACPVDAIVG 104 (270)
T ss_pred HHcCCCCCCcCCCCcHHHHHHHHHHhCCCccccccc--cccccccceeEEccccCCCCcHHHHhCCHhheec
Confidence 446788899999999999999999999865444321 111 00 000112235788899999999888743
No 31
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.44 E-value=2.3e-05 Score=34.73 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=13.5
Q ss_pred ecccCceecccCCcc
Q psy3842 77 SELSGKRESTCAPAR 91 (139)
Q Consensus 77 ~~~~g~~~~~CPtga 91 (139)
|+.||.|+++||++|
T Consensus 1 C~~C~~C~~~Cp~~A 15 (15)
T PF12798_consen 1 CTGCGACVEVCPTGA 15 (15)
T ss_pred CCCchHHHHHhcCCC
Confidence 568999999999997
No 32
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=96.69 E-value=0.00031 Score=34.81 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=15.1
Q ss_pred eecccCceecccCCcccc
Q psy3842 76 LSELSGKRESTCAPAREG 93 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~ 93 (139)
.|+.||.|+.+||++|+.
T Consensus 7 ~C~~Cg~C~~~CP~~ai~ 24 (24)
T PF00037_consen 7 KCIGCGRCVEACPFDAIT 24 (24)
T ss_dssp TSSS-THHHHHSTTSSEE
T ss_pred HCCCcchhhhhcccccCC
Confidence 588999999999999973
No 33
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.59 E-value=0.00036 Score=34.67 Aligned_cols=18 Identities=11% Similarity=-0.038 Sum_probs=15.7
Q ss_pred eeecccCceecccCCccc
Q psy3842 75 FLSELSGKRESTCAPARE 92 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal 92 (139)
..|..||.|+.+||.+|+
T Consensus 7 ~~C~~Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 7 DKCIGCGDCVRVCPEGAI 24 (24)
T ss_pred hhCcChhHHHHhcchhcC
Confidence 357899999999999885
No 34
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=96.35 E-value=0.001 Score=48.71 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=19.4
Q ss_pred cceeecccCceecccCCccccc
Q psy3842 73 KLFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal~~ 94 (139)
.+.-|.+||.|+++|||+||..
T Consensus 93 n~grCIfCg~C~e~CPt~Al~~ 114 (172)
T COG1143 93 NLGRCIFCGLCVEVCPTGALVL 114 (172)
T ss_pred ccccccccCchhhhCchhhhcC
Confidence 5678999999999999999853
No 35
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=96.31 E-value=0.00081 Score=39.42 Aligned_cols=20 Identities=10% Similarity=-0.021 Sum_probs=14.8
Q ss_pred cceeecccCceecccCCccc
Q psy3842 73 KLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal 92 (139)
.+..|+.||.|+++||++|+
T Consensus 36 ~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 36 NAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp TGGG--TTCHHHHHSTTT-E
T ss_pred CCCccccHhHHHHHcchhhC
Confidence 45589999999999999985
No 36
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=95.42 E-value=0.0048 Score=38.35 Aligned_cols=20 Identities=10% Similarity=-0.109 Sum_probs=17.8
Q ss_pred ccceeecccCceecccCCcc
Q psy3842 72 EKLFLSELSGKRESTCAPAR 91 (139)
Q Consensus 72 ~~~~~~~~~g~~~~~CPtga 91 (139)
.+...|+.||+|+.+||++.
T Consensus 47 ~~~~~CVgCgrCv~~CP~~I 66 (69)
T PF13746_consen 47 YGEGDCVGCGRCVRVCPAGI 66 (69)
T ss_pred cCCccCCCcChHhhhcCCCC
Confidence 46779999999999999984
No 37
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=95.33 E-value=0.0027 Score=38.71 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=16.9
Q ss_pred ecccCceecccCCcccccc
Q psy3842 77 SELSGKRESTCAPAREGVM 95 (139)
Q Consensus 77 ~~~~g~~~~~CPtgal~~~ 95 (139)
|..||+|+++||++||...
T Consensus 2 C~~C~~C~~~CP~~AI~~~ 20 (67)
T PF13484_consen 2 CITCGKCAEACPTGAISGE 20 (67)
T ss_pred CcchhHHHHhCcHhhccCC
Confidence 6789999999999998765
No 38
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=94.98 E-value=0.0043 Score=36.03 Aligned_cols=18 Identities=11% Similarity=0.111 Sum_probs=9.3
Q ss_pred ecccCceecccCCccccc
Q psy3842 77 SELSGKRESTCAPAREGV 94 (139)
Q Consensus 77 ~~~~g~~~~~CPtgal~~ 94 (139)
|+.||.|+.+||++++..
T Consensus 2 C~~C~~C~~~CP~~~i~~ 19 (52)
T PF12838_consen 2 CIGCGACVEACPTGAIRL 19 (52)
T ss_dssp -SS--HHHHH-TTHHCEE
T ss_pred CCCcCchHHhcCccccCc
Confidence 556777777777776643
No 39
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=94.84 E-value=0.011 Score=35.53 Aligned_cols=19 Identities=11% Similarity=-0.132 Sum_probs=14.2
Q ss_pred eeecccCceecccCC-cccc
Q psy3842 75 FLSELSGKRESTCAP-AREG 93 (139)
Q Consensus 75 ~~~~~~g~~~~~CPt-gal~ 93 (139)
..|+.||.|+.+||| +|+.
T Consensus 39 ~~C~GCg~C~~~CPv~~AI~ 58 (59)
T PF14697_consen 39 DKCIGCGLCVKVCPVKDAIT 58 (59)
T ss_dssp TT--S-SCCCCCSSSTTSEE
T ss_pred ccCcCcCcccccCCCccCCC
Confidence 478999999999998 9875
No 40
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=94.67 E-value=0.007 Score=35.11 Aligned_cols=19 Identities=11% Similarity=0.027 Sum_probs=12.1
Q ss_pred cceeecccCceecccCCcc
Q psy3842 73 KLFLSELSGKRESTCAPAR 91 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtga 91 (139)
.+..|+.||+|+.+||++|
T Consensus 34 ~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 34 DPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp TGGG----SHHHHHTTTS-
T ss_pred echhCcCcChhhhhCcCcC
Confidence 3557999999999999997
No 41
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=94.62 E-value=0.014 Score=33.77 Aligned_cols=36 Identities=17% Similarity=0.092 Sum_probs=13.8
Q ss_pred eeecccCceecccCC---cccccceeeeccccccCCCCC
Q psy3842 75 FLSELSGKRESTCAP---AREGVMEFLLVNHPLDCPICD 110 (139)
Q Consensus 75 ~~~~~~g~~~~~CPt---gal~~~e~~l~~~~~~C~~C~ 110 (139)
..|+.||.|+.+||+ .+....+......+..|..|+
T Consensus 7 ~~C~~C~~C~~~CP~~~~~~~~~~~~~~~~~~~~C~~Cg 45 (52)
T PF13237_consen 7 DKCIGCGRCVKVCPADNAIAIDDGEKKVEIDPERCIGCG 45 (52)
T ss_dssp T------TTGGG-TT-----EEE-SSSEEE-TTT--TTS
T ss_pred ccCcCCcChHHHccchhHHHhhccCCCeEeCcccccccC
Confidence 358899999999999 222222222333556677765
No 42
>CHL00065 psaC photosystem I subunit VII
Probab=94.36 E-value=0.014 Score=37.10 Aligned_cols=24 Identities=21% Similarity=0.095 Sum_probs=20.6
Q ss_pred eeecccCceecccCCcccccceee
Q psy3842 75 FLSELSGKRESTCAPAREGVMEFL 98 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~~e~~ 98 (139)
..|+.||.|+.+||++|+....+.
T Consensus 46 ~~C~~C~~C~~~CP~~Ai~~~~~~ 69 (81)
T CHL00065 46 EDCVGCKRCESACPTDFLSVRVYL 69 (81)
T ss_pred CcCCChhhhhhhcCccccEEEEEe
Confidence 468899999999999999876654
No 43
>PRK08764 ferredoxin; Provisional
Probab=94.17 E-value=0.043 Score=38.39 Aligned_cols=55 Identities=9% Similarity=0.146 Sum_probs=38.4
Q ss_pred eeecccCceecccCCcccccceeeeccccccCCCCCCCCcchhHHHHHHhCCCCCCCCC
Q psy3842 75 FLSELSGKRESTCAPAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTD 133 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~~e~~l~~~~~~C~~C~~g~~~eL~~~~~~~gv~~~rf~~ 133 (139)
+--.+||.|=.. |- ......+.++...|..|.++++++||+++..+|++..+|..
T Consensus 15 lp~~ncg~cg~~---~c-~~~a~~~v~g~~~~~~C~~~G~c~lq~~a~~~gv~~~~~~~ 69 (135)
T PRK08764 15 LPQTQCGQCGFD---GC-RPYAQAMARGEATIDRCPPGGDAGARALAQVLGVPARPYDR 69 (135)
T ss_pred CCCCCCccCCCc---CH-HHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHhCCCcccccc
Confidence 334567777331 11 11222345788899999999999999999999998776643
No 44
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=93.99 E-value=0.024 Score=25.63 Aligned_cols=15 Identities=13% Similarity=0.129 Sum_probs=12.4
Q ss_pred eecccCceecccCCc
Q psy3842 76 LSELSGKRESTCAPA 90 (139)
Q Consensus 76 ~~~~~g~~~~~CPtg 90 (139)
.|+.|+.|+.+||+.
T Consensus 3 ~C~~C~~C~~~Cp~~ 17 (17)
T PF12800_consen 3 RCIGCGSCVDVCPTQ 17 (17)
T ss_dssp CCTTSSSSTTTSTT-
T ss_pred cCCCCchHHhhccCC
Confidence 477899999999974
No 45
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=93.91 E-value=0.031 Score=41.09 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=27.2
Q ss_pred eeecccCceecccCCcccccce-ee------------eccccccCCCCCCCC
Q psy3842 75 FLSELSGKRESTCAPAREGVME-FL------------LVNHPLDCPICDQGG 113 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~~e-~~------------l~~~~~~C~~C~~g~ 113 (139)
..|+.||.|+.+||++|+.... +. .......|..|+.-.
T Consensus 73 ~~C~~Cg~C~~~CPt~AI~~~~~~~~~~~~~~~l~~~~~~~~~~C~~Cg~~f 124 (181)
T PRK08222 73 GRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLYTRATFHLQRCSRCERPF 124 (181)
T ss_pred CcCcCCCCcccccCcCeEEeccceeeeccchhhhheecccccCcCcccCCcc
Confidence 3688999999999999986432 11 112455688888754
No 46
>PLN00071 photosystem I subunit VII; Provisional
Probab=93.69 E-value=0.022 Score=36.05 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=20.6
Q ss_pred ceeecccCceecccCCcccccceee
Q psy3842 74 LFLSELSGKRESTCAPAREGVMEFL 98 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~~e~~ 98 (139)
...|+.||.|+++||++|+....+.
T Consensus 45 ~~~C~~Cg~C~~~CP~~Ai~~~~~~ 69 (81)
T PLN00071 45 TEDCVGCKRCESACPTDFLSVRVYL 69 (81)
T ss_pred CCcCcChhhHHhhcCCccceEeeee
Confidence 3468899999999999999875543
No 47
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=93.37 E-value=0.016 Score=33.72 Aligned_cols=19 Identities=11% Similarity=0.023 Sum_probs=14.1
Q ss_pred ecccCceecccCCcccccc
Q psy3842 77 SELSGKRESTCAPAREGVM 95 (139)
Q Consensus 77 ~~~~g~~~~~CPtgal~~~ 95 (139)
|+.||.|+++||++++...
T Consensus 2 Ci~Cg~C~~~CP~~~~~~~ 20 (55)
T PF13187_consen 2 CIGCGRCVEACPVGVIEFD 20 (55)
T ss_dssp --TTTHHHHHSTTT-EEEE
T ss_pred CCCcchHHHHCCccCeEcc
Confidence 6789999999999998643
No 48
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=93.34 E-value=0.023 Score=35.96 Aligned_cols=24 Identities=21% Similarity=0.095 Sum_probs=19.9
Q ss_pred eeecccCceecccCCcccccceee
Q psy3842 75 FLSELSGKRESTCAPAREGVMEFL 98 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~~e~~ 98 (139)
..|+.||.|+++||++|+....+.
T Consensus 45 ~~C~~Cg~C~~~CP~~ai~~~~~~ 68 (80)
T TIGR03048 45 EDCVGCKRCESACPTDFLSVRVYL 68 (80)
T ss_pred CcCcChhHHHHhcCcccCEEEEec
Confidence 468999999999999999765443
No 49
>KOG3256|consensus
Probab=93.32 E-value=0.038 Score=40.24 Aligned_cols=24 Identities=8% Similarity=-0.021 Sum_probs=21.1
Q ss_pred cccceeecccCceecccCCccccc
Q psy3842 71 REKLFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 71 ~~~~~~~~~~g~~~~~CPtgal~~ 94 (139)
.-.|-.|.+||.|..+|||.|+..
T Consensus 146 dIDmtkCIyCG~CqEaCPvdaive 169 (212)
T KOG3256|consen 146 DIDMTKCIYCGFCQEACPVDAIVE 169 (212)
T ss_pred cccceeeeeecchhhhCCccceec
Confidence 347889999999999999999864
No 50
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=93.23 E-value=0.018 Score=37.11 Aligned_cols=22 Identities=9% Similarity=-0.082 Sum_probs=18.5
Q ss_pred cceeecccCceecccCCccccc
Q psy3842 73 KLFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal~~ 94 (139)
....|..||.|+.+||++|+..
T Consensus 68 ~~~~C~~Cg~C~~~CP~~AI~~ 89 (91)
T TIGR02936 68 NPGNCIGCGACARVCPKKCQTH 89 (91)
T ss_pred CCccCcChhhhhhhCCHhHEec
Confidence 3457899999999999999853
No 51
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=93.07 E-value=0.028 Score=36.22 Aligned_cols=21 Identities=10% Similarity=-0.053 Sum_probs=18.1
Q ss_pred ceeecccCceecccCCccccc
Q psy3842 74 LFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~ 94 (139)
...|..||.|+.+||++|+..
T Consensus 28 ~~~Ci~Cg~C~~~CP~~ai~~ 48 (99)
T COG1145 28 AEKCIGCGLCVKVCPTGAIEL 48 (99)
T ss_pred ccccCCCCCchhhCCHHHhhc
Confidence 345899999999999999875
No 52
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=93.06 E-value=0.033 Score=40.74 Aligned_cols=22 Identities=9% Similarity=-0.090 Sum_probs=18.7
Q ss_pred ceeecccCceecccCCcccccc
Q psy3842 74 LFLSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~~ 95 (139)
...|..|+.|+.+||++|+...
T Consensus 54 ~~~CIgC~lCa~iCP~~aI~m~ 75 (172)
T COG1143 54 RDKCIGCGLCANICPANAITME 75 (172)
T ss_pred ccCCcchhHHHhhCCcCceEEE
Confidence 3459999999999999998654
No 53
>PRK02651 photosystem I subunit VII; Provisional
Probab=93.05 E-value=0.036 Score=34.95 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=20.2
Q ss_pred eeecccCceecccCCcccccceee
Q psy3842 75 FLSELSGKRESTCAPAREGVMEFL 98 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~~e~~ 98 (139)
..|+.||.|+.+||++|+....++
T Consensus 46 ~~C~~Cg~C~~~CP~~ai~~~~~~ 69 (81)
T PRK02651 46 EDCVGCKRCETACPTDFLSIRVYL 69 (81)
T ss_pred CcCCChhhhhhhcCCCceEEEEEe
Confidence 468899999999999998876554
No 54
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=92.07 E-value=0.066 Score=36.38 Aligned_cols=24 Identities=13% Similarity=0.103 Sum_probs=18.9
Q ss_pred cceeecccCceecccCCcccccce
Q psy3842 73 KLFLSELSGKRESTCAPAREGVME 96 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal~~~e 96 (139)
....|+.||.|+++||++|+....
T Consensus 80 ~~~~C~~Cg~Cv~~CP~~al~~~~ 103 (122)
T TIGR01971 80 NFGRCIFCGLCEEACPTDAIVLTP 103 (122)
T ss_pred CcccCCCCCchhhhCCCccccccc
Confidence 345688999999999999986543
No 55
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=92.03 E-value=0.052 Score=40.00 Aligned_cols=21 Identities=10% Similarity=0.134 Sum_probs=18.1
Q ss_pred ceeecccCceecccCCccccc
Q psy3842 74 LFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~ 94 (139)
...|..||.|+++||++|+..
T Consensus 101 ~~~Ci~Cg~Cv~aCP~~AI~~ 121 (183)
T TIGR00403 101 FGVCIFCGNCVEYCPTNCLSM 121 (183)
T ss_pred cccccCcCchhhhcCCCCeec
Confidence 346899999999999999864
No 56
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=91.91 E-value=0.062 Score=38.70 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=19.3
Q ss_pred cceeecccCceecccCCcccccc
Q psy3842 73 KLFLSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal~~~ 95 (139)
....|+.||.|+.+||++|+...
T Consensus 95 ~~~~C~~Cg~Cv~~CP~~Ai~~~ 117 (164)
T PRK05888 95 NFGRCIFCGFCEEACPTDAIVET 117 (164)
T ss_pred CCCcCcccCcchhhcCcCcceec
Confidence 44578999999999999998643
No 57
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=91.65 E-value=0.051 Score=43.25 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=18.2
Q ss_pred eecccCceecccCCcccccce
Q psy3842 76 LSELSGKRESTCAPAREGVME 96 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~e 96 (139)
.|..||+|+++|||+|+....
T Consensus 173 ~c~gc~~cv~~C~~gAI~~~~ 193 (317)
T COG2221 173 LCRGCGKCVKVCPTGAITWDG 193 (317)
T ss_pred HhchhHhHHHhCCCCceeecc
Confidence 567999999999999987664
No 58
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=91.57 E-value=0.084 Score=35.06 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=11.1
Q ss_pred eecccCceecccCCcccc
Q psy3842 76 LSELSGKRESTCAPAREG 93 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~ 93 (139)
.|+.||.|+.+||++++.
T Consensus 17 ~Ci~C~~Cv~aCP~~ai~ 34 (103)
T PRK09626 17 RCKACDICVSVCPAGVLA 34 (103)
T ss_pred cccCCcchhhhcChhhhc
Confidence 355666666666666643
No 59
>PRK06273 ferredoxin; Provisional
Probab=91.50 E-value=0.061 Score=39.08 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=16.9
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|..||.|+.+||++|+..
T Consensus 50 ~CigCg~C~~aCP~~AI~~ 68 (165)
T PRK06273 50 LCIGCGGCANVCPTKAIEM 68 (165)
T ss_pred hCcChhHHHHhcCccceee
Confidence 6889999999999999754
No 60
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=91.32 E-value=0.083 Score=35.89 Aligned_cols=21 Identities=10% Similarity=-0.072 Sum_probs=17.9
Q ss_pred eeecccCceecccCCcccccc
Q psy3842 75 FLSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~~ 95 (139)
..|+.||.|+.+||++++...
T Consensus 43 ~~Ci~C~~C~~~CP~~ai~~~ 63 (122)
T TIGR01971 43 EKCIGCTLCAAVCPADAIRVV 63 (122)
T ss_pred CcCcCcchhhhhcCHhHeeee
Confidence 568999999999999987644
No 61
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=91.23 E-value=0.078 Score=35.17 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=17.9
Q ss_pred eeecccCceecccCCcccccc
Q psy3842 75 FLSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~~ 95 (139)
..|+.||.|+.+||++|+...
T Consensus 66 ~~C~~Cg~C~~~CP~~Ai~~~ 86 (101)
T TIGR00402 66 AECDFCGKCAEACPTNAFHPR 86 (101)
T ss_pred ccCcCccChhhHCCccccCcC
Confidence 368899999999999998653
No 62
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=90.99 E-value=0.084 Score=35.99 Aligned_cols=20 Identities=5% Similarity=-0.253 Sum_probs=15.6
Q ss_pred eeecccCceecccCCccccc
Q psy3842 75 FLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~ 94 (139)
..|+.||.|+.+||++++..
T Consensus 42 ~~Ci~C~~C~~~CP~~ai~~ 61 (120)
T PRK08348 42 DKCVGCRMCVTVCPAGVFVY 61 (120)
T ss_pred ccCcCcccHHHHCCccceEc
Confidence 35778889999999888643
No 63
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=90.96 E-value=0.063 Score=36.62 Aligned_cols=22 Identities=9% Similarity=0.128 Sum_probs=18.6
Q ss_pred eeecccCceecccCCcccccce
Q psy3842 75 FLSELSGKRESTCAPAREGVME 96 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~~e 96 (139)
..|+.||.|+++||++|+....
T Consensus 73 ~~C~~Cg~Cv~~CP~~Ai~~~~ 94 (120)
T PRK08348 73 GRCVFCGQCVDVCPTGALQMSD 94 (120)
T ss_pred CcCcChhhhHHhCCcCcEEecc
Confidence 3688999999999999987543
No 64
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=90.58 E-value=0.071 Score=41.51 Aligned_cols=20 Identities=10% Similarity=-0.026 Sum_probs=17.7
Q ss_pred eeecccCceecccCCccccc
Q psy3842 75 FLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~ 94 (139)
..|+.||+|+++||++|+..
T Consensus 242 ~~C~~Cg~Cv~~CP~~Ai~~ 261 (271)
T PRK09477 242 GDCITCGRCIDVCSEDVFNF 261 (271)
T ss_pred ccCcChhHHHhhcCccceee
Confidence 46999999999999999864
No 65
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=90.49 E-value=0.097 Score=38.47 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=18.0
Q ss_pred ceeecccCceecccCCccccc
Q psy3842 74 LFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~ 94 (139)
...|+.||.|+.+||++|+..
T Consensus 37 ~~~Ci~Cg~Cv~aCP~~Ai~~ 57 (181)
T PRK08222 37 PSQCIACGACTCACPANALTI 57 (181)
T ss_pred hhhCcchhHHHHhCCccceEc
Confidence 446899999999999999864
No 66
>PRK06273 ferredoxin; Provisional
Probab=90.08 E-value=0.1 Score=37.92 Aligned_cols=21 Identities=5% Similarity=-0.284 Sum_probs=18.0
Q ss_pred cceeecccCceecccCCcccc
Q psy3842 73 KLFLSELSGKRESTCAPAREG 93 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal~ 93 (139)
.+..|+.||.|+++||++|+.
T Consensus 89 d~~kCi~Cg~C~~aCP~~AI~ 109 (165)
T PRK06273 89 DYEKCVYCLYCHDFCPVFALF 109 (165)
T ss_pred ccccCcCCCCcchhCCHhhee
Confidence 345789999999999999983
No 67
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=90.06 E-value=0.12 Score=30.98 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=12.5
Q ss_pred eecccCceecccCCcccccce
Q psy3842 76 LSELSGKRESTCAPAREGVME 96 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~e 96 (139)
.|..||.|+.+||.+++...+
T Consensus 7 ~Ci~Cg~C~~~Cp~~~~~~i~ 27 (59)
T PF14697_consen 7 KCIGCGKCVRACPDGAIDAIE 27 (59)
T ss_dssp T----SCCCHHCCCCS-S-EC
T ss_pred cccChhhHHhHcCccceeeEE
Confidence 478999999999998776544
No 68
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=89.98 E-value=0.1 Score=34.69 Aligned_cols=20 Identities=15% Similarity=-0.144 Sum_probs=17.7
Q ss_pred eeecccCceecccCCccccc
Q psy3842 75 FLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~ 94 (139)
..|+.||.|+++||++|+..
T Consensus 53 ~~C~~C~~C~~~CP~~AI~~ 72 (103)
T PRK09626 53 ESCIGCRECELHCPDFAIYV 72 (103)
T ss_pred ccCCCcCcchhhCChhhEEE
Confidence 46889999999999999864
No 69
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=89.96 E-value=0.1 Score=37.78 Aligned_cols=20 Identities=10% Similarity=0.107 Sum_probs=17.6
Q ss_pred eeecccCceecccCCccccc
Q psy3842 75 FLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~ 94 (139)
..|..||.|+++||++|+..
T Consensus 99 ~~C~~Cg~C~~~CP~~AI~~ 118 (167)
T CHL00014 99 GVCIFCGNCVEYCPTNCLSM 118 (167)
T ss_pred CcCcCccchHhhcCcCceec
Confidence 46899999999999999864
No 70
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=89.94 E-value=0.12 Score=32.63 Aligned_cols=20 Identities=5% Similarity=-0.036 Sum_probs=16.8
Q ss_pred eecccCceecccCCcccccc
Q psy3842 76 LSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~ 95 (139)
.|+.||.|+.+||++++...
T Consensus 9 ~Ci~C~~Cv~~CP~~~i~~~ 28 (80)
T TIGR03048 9 TCIGCTQCVRACPTDVLEMV 28 (80)
T ss_pred cCcCcchHHHHCCccceeee
Confidence 57889999999999987643
No 71
>PRK10194 ferredoxin-type protein; Provisional
Probab=89.75 E-value=0.11 Score=37.37 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=11.1
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|+.||.|+.+||++|+..
T Consensus 139 ~C~gCg~C~~~CP~~AI~~ 157 (163)
T PRK10194 139 LCNGCGACAASCPVSAITA 157 (163)
T ss_pred cCcCcchhhhhCCccceEe
Confidence 3456666666666666543
No 72
>PRK09898 hypothetical protein; Provisional
Probab=89.72 E-value=0.07 Score=39.93 Aligned_cols=21 Identities=19% Similarity=0.388 Sum_probs=12.2
Q ss_pred eecccCceecccCCcccccce
Q psy3842 76 LSELSGKRESTCAPAREGVME 96 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~e 96 (139)
.|+.||.|+++||++|+...+
T Consensus 182 kC~~Cg~Cv~~CP~~Ai~~~~ 202 (208)
T PRK09898 182 KCVLCGECANACPTGALKIIE 202 (208)
T ss_pred cCcChHHHHHhCCcccEEEec
Confidence 455666666666666655443
No 73
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=89.59 E-value=0.11 Score=34.79 Aligned_cols=20 Identities=10% Similarity=0.079 Sum_probs=17.0
Q ss_pred eeecccCceecccCCccccc
Q psy3842 75 FLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~ 94 (139)
..|+.||.|+++||++|+..
T Consensus 81 ~~C~~Cg~Cv~~CP~~AI~~ 100 (105)
T PRK09624 81 DYCKGCGICANECPTKAIEM 100 (105)
T ss_pred hhCCCcCchhhhcCcCcEEE
Confidence 46889999999999999753
No 74
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=89.58 E-value=0.14 Score=32.92 Aligned_cols=22 Identities=9% Similarity=-0.068 Sum_probs=18.1
Q ss_pred ceeecccCceecccCCcccccc
Q psy3842 74 LFLSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~~ 95 (139)
+..|+.||.|+.+||++++...
T Consensus 20 ~~~Ci~C~~Cv~~CP~~~i~~~ 41 (91)
T TIGR02936 20 QEKCIGCGRCYKVCGRDVLTLK 41 (91)
T ss_pred HhHCCCcchHHHHcChhhceee
Confidence 3468899999999999987643
No 75
>PRK02651 photosystem I subunit VII; Provisional
Probab=89.56 E-value=0.15 Score=32.03 Aligned_cols=23 Identities=4% Similarity=-0.138 Sum_probs=18.3
Q ss_pred ceeecccCceecccCCcccccce
Q psy3842 74 LFLSELSGKRESTCAPAREGVME 96 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~~e 96 (139)
...|..||.|+++||++++...+
T Consensus 8 ~~~Ci~C~~C~~~CP~~~i~~~~ 30 (81)
T PRK02651 8 YDTCIGCTQCVRACPLDVLEMVP 30 (81)
T ss_pred cccCCCcchHHHHCCccceeccc
Confidence 34678999999999999876443
No 76
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=89.38 E-value=0.094 Score=36.65 Aligned_cols=19 Identities=11% Similarity=0.100 Sum_probs=16.6
Q ss_pred eeecccCceecccCCcccc
Q psy3842 75 FLSELSGKRESTCAPAREG 93 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~ 93 (139)
..|..||.|+++||++|+.
T Consensus 89 ~~C~~Cg~Cv~vCP~~a~~ 107 (133)
T PRK09625 89 SHCKGCGVCVEVCPTNPKS 107 (133)
T ss_pred CcCcChhHHHHHCCcCceE
Confidence 3588999999999999864
No 77
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=89.34 E-value=0.099 Score=40.37 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=16.8
Q ss_pred eeecccCceecccCCcccc
Q psy3842 75 FLSELSGKRESTCAPAREG 93 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~ 93 (139)
..|+.||+|+++||++|+.
T Consensus 234 ~~C~~Cg~Cv~~CP~~Ai~ 252 (255)
T TIGR02163 234 GDCTLCGRCIDVCHEDVLG 252 (255)
T ss_pred ccccchhHHHHhCCccccc
Confidence 4689999999999999875
No 78
>COG1146 Ferredoxin [Energy production and conversion]
Probab=89.27 E-value=0.11 Score=31.84 Aligned_cols=25 Identities=16% Similarity=-0.049 Sum_probs=20.0
Q ss_pred cccceeecccCceecccCCcccccc
Q psy3842 71 REKLFLSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 71 ~~~~~~~~~~g~~~~~CPtgal~~~ 95 (139)
+-....|..||.|+.+||++|+...
T Consensus 37 ~~~~e~C~~C~~C~~~CP~~aI~~~ 61 (68)
T COG1146 37 VARPEECIDCGLCELACPVGAIKVD 61 (68)
T ss_pred EeccccCccchhhhhhCCcceEEEe
Confidence 3345678999999999999987654
No 79
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=89.16 E-value=0.13 Score=32.00 Aligned_cols=20 Identities=10% Similarity=0.049 Sum_probs=16.8
Q ss_pred eeecccCceecccCCccccc
Q psy3842 75 FLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~ 94 (139)
..|..|+.|+.+||++|+..
T Consensus 55 ~~C~~C~~C~~~CP~~Ai~~ 74 (78)
T TIGR02179 55 DYCKGCGICANVCPVKAIEM 74 (78)
T ss_pred ccCcCccchhhhCCccccEe
Confidence 35788999999999998753
No 80
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=88.42 E-value=0.14 Score=40.66 Aligned_cols=20 Identities=10% Similarity=-0.069 Sum_probs=17.4
Q ss_pred eecccCceecccCCcccccc
Q psy3842 76 LSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~ 95 (139)
.|+.||.|+.+||++|+...
T Consensus 202 ~C~~Cg~Cv~~CP~~Al~~~ 221 (314)
T TIGR02912 202 KCIGCGECVLKCPTGAWTRS 221 (314)
T ss_pred cCcCcchhhhhCCHhhcccC
Confidence 68899999999999998654
No 81
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=88.32 E-value=0.12 Score=41.61 Aligned_cols=21 Identities=5% Similarity=-0.096 Sum_probs=17.1
Q ss_pred eecccCceecccCCcccccce
Q psy3842 76 LSELSGKRESTCAPAREGVME 96 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~e 96 (139)
.|..|.+|+++|||+|+....
T Consensus 186 ~Cg~C~~CldaCPt~Al~~~~ 206 (337)
T COG1600 186 HCGSCTRCLDACPTGALVAPY 206 (337)
T ss_pred cChhhHHHHhhCCcccccCCC
Confidence 467788999999999996543
No 82
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=88.17 E-value=0.26 Score=35.39 Aligned_cols=20 Identities=5% Similarity=-0.067 Sum_probs=17.3
Q ss_pred eeecccCceecccCCccccc
Q psy3842 75 FLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~ 94 (139)
..|..||.|+.+||++++..
T Consensus 58 ~~Ci~C~~C~~~CP~~ai~~ 77 (164)
T PRK05888 58 ERCIACKLCAAICPADAITI 77 (164)
T ss_pred ccCCcccChHHHcCcccccc
Confidence 37999999999999998753
No 83
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=88.10 E-value=0.18 Score=36.90 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=26.8
Q ss_pred eeecccCceecccCCcccccc-eeee------------ccccccCCCCCCCC
Q psy3842 75 FLSELSGKRESTCAPAREGVM-EFLL------------VNHPLDCPICDQGG 113 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~~-e~~l------------~~~~~~C~~C~~g~ 113 (139)
..|+.||.|+++||++|+... ++.+ ......|..|+...
T Consensus 73 ~~C~~Cg~C~~vCP~~AI~~~~~~~~~~~~~~~l~~~~~~~~~~C~~CG~~f 124 (180)
T PRK12387 73 GRCIFCGRCEEVCPTAAIKLSQEFELAVWKKEDLLQQSEFALCNCRVCGRPF 124 (180)
T ss_pred ccCcCccchhhhcCcCceEccCccchhhccHHHhhhhceeCcccchhhCCcc
Confidence 468899999999999998532 2111 11345788898754
No 84
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=87.92 E-value=0.18 Score=36.80 Aligned_cols=21 Identities=10% Similarity=-0.078 Sum_probs=17.7
Q ss_pred ceeecccCceecccCCccccc
Q psy3842 74 LFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~ 94 (139)
...|+.||.|+.+||++|+..
T Consensus 37 ~~~C~~C~~Cv~~CP~~ai~~ 57 (180)
T PRK12387 37 PQQCIGCAACVNACPSNALTV 57 (180)
T ss_pred hhhCcChhHHHHhcCccCeEe
Confidence 346889999999999999754
No 85
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=87.89 E-value=0.22 Score=33.01 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=16.5
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|..|+.|+++||++++..
T Consensus 35 ~C~~C~~C~~~CP~~~i~~ 53 (101)
T TIGR00402 35 VCTRCGECASACENNILQL 53 (101)
T ss_pred cCcChhHHHHHcCccccee
Confidence 5789999999999998764
No 86
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=87.84 E-value=0.16 Score=33.90 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=17.0
Q ss_pred eeecccCceecccCCccccc
Q psy3842 75 FLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~ 94 (139)
..|..||.|+++||++|+..
T Consensus 81 ~~C~~Cg~Cv~~CP~~AI~~ 100 (105)
T PRK09623 81 DYCKGCGICANECPTKAITM 100 (105)
T ss_pred hhCcCcchhhhhcCcCcEEe
Confidence 45789999999999999754
No 87
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=87.77 E-value=0.17 Score=40.06 Aligned_cols=21 Identities=10% Similarity=0.139 Sum_probs=17.9
Q ss_pred eeecccCceecccCCcccccc
Q psy3842 75 FLSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~~ 95 (139)
..|+.||.|+++||++|+...
T Consensus 289 ~~C~gCg~C~~~CP~~AI~~~ 309 (312)
T PRK14028 289 QYCKGCGVCAEVCPTGAIQMV 309 (312)
T ss_pred ccCcCcCchhhhCCHhheEec
Confidence 458999999999999998643
No 88
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=87.66 E-value=0.18 Score=32.36 Aligned_cols=23 Identities=22% Similarity=0.197 Sum_probs=18.8
Q ss_pred ceeecccCceecccCCcccccce
Q psy3842 74 LFLSELSGKRESTCAPAREGVME 96 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~~e 96 (139)
...|+.||.|+.+||++|+...+
T Consensus 62 ~~~C~~C~~C~~~Cp~~a~~~~~ 84 (99)
T COG1145 62 PDLCVLCGACLKVCPVDALSIAE 84 (99)
T ss_pred cccCccccchHhhCCcCCeehhh
Confidence 34689999999999999965543
No 89
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=87.42 E-value=0.23 Score=37.42 Aligned_cols=22 Identities=9% Similarity=-0.017 Sum_probs=17.4
Q ss_pred eeecccCceecccCCcccccce
Q psy3842 75 FLSELSGKRESTCAPAREGVME 96 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~~e 96 (139)
..|+.||.|+.+||++++...+
T Consensus 53 ~~Ci~Cg~Cv~aCP~~ai~~~~ 74 (213)
T TIGR00397 53 AACVRCGLCVEACPYDILSLAS 74 (213)
T ss_pred ccccchhHHHHhCCcccccccc
Confidence 3688899999999999876543
No 90
>PRK06991 ferredoxin; Provisional
Probab=87.38 E-value=0.16 Score=39.69 Aligned_cols=23 Identities=9% Similarity=-0.037 Sum_probs=19.1
Q ss_pred eeecccCceecccCCccccccee
Q psy3842 75 FLSELSGKRESTCAPAREGVMEF 97 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~~e~ 97 (139)
..|+.||.|+.+||++++....+
T Consensus 115 ~~CigCg~Cv~vCP~~AI~~~~~ 137 (270)
T PRK06991 115 DLCTGCDLCVPPCPVDCIDMVPV 137 (270)
T ss_pred hhCCCchHHHhhCCcCCeEeecC
Confidence 47899999999999999865443
No 91
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=87.13 E-value=0.17 Score=40.37 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=16.9
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
-|..|+.|+++||++|+..
T Consensus 206 fC~~C~~C~~~CP~~Ai~~ 224 (314)
T TIGR02486 206 FCETCGKCADECPSGAISK 224 (314)
T ss_pred cCcchhHHHhhCCccccCC
Confidence 5888999999999999864
No 92
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=87.12 E-value=0.14 Score=40.24 Aligned_cols=19 Identities=11% Similarity=-0.022 Sum_probs=16.7
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|..|+.|+++|||+|+..
T Consensus 160 ~C~~C~~C~~aCPt~AI~~ 178 (282)
T TIGR00276 160 YCGRCTKCIDACPTQALVE 178 (282)
T ss_pred CCccHHHHHHhcCcccccC
Confidence 5788999999999999853
No 93
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=86.95 E-value=0.25 Score=38.50 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=9.2
Q ss_pred eecccCceecccCCccc
Q psy3842 76 LSELSGKRESTCAPARE 92 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal 92 (139)
.|..||.|+.+||++|+
T Consensus 49 ~C~~C~~C~~~Cp~~a~ 65 (295)
T TIGR02494 49 RCLGCGKCVEVCPAGTA 65 (295)
T ss_pred cCCCCchhhhhCccccc
Confidence 35555555555555554
No 94
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=86.76 E-value=0.2 Score=32.81 Aligned_cols=18 Identities=11% Similarity=0.108 Sum_probs=15.6
Q ss_pred eecccCceecccCCcccc
Q psy3842 76 LSELSGKRESTCAPAREG 93 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~ 93 (139)
-|..||-|+++||+.|+.
T Consensus 67 yCKGCGICa~vCP~kaI~ 84 (91)
T COG1144 67 YCKGCGICANVCPVKAIE 84 (91)
T ss_pred cccCceechhhCChhheE
Confidence 478999999999998864
No 95
>PLN00071 photosystem I subunit VII; Provisional
Probab=86.24 E-value=0.18 Score=31.73 Aligned_cols=20 Identities=5% Similarity=-0.021 Sum_probs=17.2
Q ss_pred eecccCceecccCCcccccc
Q psy3842 76 LSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~ 95 (139)
.|..||.|+.+||++++...
T Consensus 10 ~C~~C~~C~~~CP~~~i~~~ 29 (81)
T PLN00071 10 TCIGCTQCVRACPTDVLEMI 29 (81)
T ss_pred cCcChhHHHHHCCccceeee
Confidence 67899999999999987644
No 96
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=85.80 E-value=0.16 Score=29.57 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=8.9
Q ss_pred ceeecccCceecccCCc
Q psy3842 74 LFLSELSGKRESTCAPA 90 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtg 90 (139)
...|+.||+|..+||++
T Consensus 40 ~~~C~~C~~C~~~CP~~ 56 (57)
T PF13183_consen 40 AWSCTTCGACSEVCPVG 56 (57)
T ss_dssp HGG-----HHHHH-TT-
T ss_pred ccCCcCcCCccCcCccc
Confidence 37899999999999987
No 97
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=85.73 E-value=0.34 Score=37.54 Aligned_cols=19 Identities=11% Similarity=0.027 Sum_probs=14.4
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|+.||.|+.+||++++..
T Consensus 60 ~Ci~Cg~Cv~aCP~~aI~~ 78 (254)
T PRK09476 60 ACIRCGLCVQACPYDTLKL 78 (254)
T ss_pred hCcCchHHHHhCCccccCc
Confidence 5778888888888887653
No 98
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=85.45 E-value=0.3 Score=37.22 Aligned_cols=19 Identities=11% Similarity=0.120 Sum_probs=16.1
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|..|+.|+.+||++++..
T Consensus 149 ~C~~C~~C~~~CP~~ai~~ 167 (234)
T TIGR02700 149 RCKGCGICVDACPRSAIDM 167 (234)
T ss_pred HCcCcchHHHhCCcccEEe
Confidence 4789999999999998753
No 99
>PRK07118 ferredoxin; Validated
Probab=85.40 E-value=0.24 Score=38.92 Aligned_cols=21 Identities=14% Similarity=0.063 Sum_probs=17.9
Q ss_pred eecccCceecccCCcccccce
Q psy3842 76 LSELSGKRESTCAPAREGVME 96 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~e 96 (139)
.|..|+.|+.+||++|+....
T Consensus 214 ~Ci~Cg~Cv~~CP~~AI~~~~ 234 (280)
T PRK07118 214 GCIGCGKCVKACPAGAITMEN 234 (280)
T ss_pred ccccchHHHhhCCcCcEEEeC
Confidence 578999999999999987644
No 100
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=85.29 E-value=0.35 Score=39.01 Aligned_cols=19 Identities=11% Similarity=0.210 Sum_probs=17.4
Q ss_pred cceeecccCceecccCCcc
Q psy3842 73 KLFLSELSGKRESTCAPAR 91 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtga 91 (139)
++..|+.||+|+.+||++.
T Consensus 299 G~~~CvgCGrC~~~CP~~i 317 (334)
T TIGR02910 299 GYHMCVGCGRCDDICPEYI 317 (334)
T ss_pred CccccCCcCchhhhCCCCC
Confidence 6779999999999999995
No 101
>PRK10194 ferredoxin-type protein; Provisional
Probab=85.05 E-value=0.26 Score=35.33 Aligned_cols=20 Identities=5% Similarity=-0.071 Sum_probs=17.2
Q ss_pred eeecccCceecccCCccccc
Q psy3842 75 FLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~ 94 (139)
..|+.|+.|+++||++|+..
T Consensus 66 ~~C~~C~~C~~~CP~~ai~~ 85 (163)
T PRK10194 66 NECSFCYACAQACPESLFSP 85 (163)
T ss_pred CCCCCchhhHhhCcchheec
Confidence 35889999999999999754
No 102
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=84.99 E-value=0.29 Score=35.64 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=17.9
Q ss_pred eeecccC------ceecccCCcccccc
Q psy3842 75 FLSELSG------KRESTCAPAREGVM 95 (139)
Q Consensus 75 ~~~~~~g------~~~~~CPtgal~~~ 95 (139)
..|..|+ .|+.+||++||...
T Consensus 129 ~kC~~C~~~~~~paCv~~CP~~Al~~~ 155 (181)
T PRK10330 129 NKCDLCNHREDGPACMAACPTHALICV 155 (181)
T ss_pred eeCcCCCCCCCCccchhhCchhhEEEe
Confidence 4688998 89999999999754
No 103
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=83.98 E-value=0.24 Score=34.64 Aligned_cols=21 Identities=10% Similarity=-0.091 Sum_probs=18.0
Q ss_pred ceeecccCceecccCCccccc
Q psy3842 74 LFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~ 94 (139)
...|+.||.|+.+||++|+..
T Consensus 44 ~~~C~~Cg~Cv~~CP~~AI~~ 64 (132)
T TIGR02060 44 PDMCWECYSCVKACPQGAIDV 64 (132)
T ss_pred chhCccHHHHHHhCCcCceEE
Confidence 356889999999999999854
No 104
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=83.86 E-value=0.75 Score=32.29 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=14.1
Q ss_pred eecccCceecccCCcc
Q psy3842 76 LSELSGKRESTCAPAR 91 (139)
Q Consensus 76 ~~~~~g~~~~~CPtga 91 (139)
.|..||.|.++||+..
T Consensus 3 ~Ci~CG~C~~~CP~~~ 18 (144)
T TIGR03290 3 ACYQCGTCTGSCPSGR 18 (144)
T ss_pred cccCCCCCcCcCCCcc
Confidence 5889999999999864
No 105
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=83.72 E-value=0.38 Score=36.26 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=16.3
Q ss_pred eecccCceecccCCc--ccccc
Q psy3842 76 LSELSGKRESTCAPA--REGVM 95 (139)
Q Consensus 76 ~~~~~g~~~~~CPtg--al~~~ 95 (139)
.|+.||.|+++|||+ |+.++
T Consensus 176 ~C~gCG~C~~~CP~~~~AI~v~ 197 (213)
T TIGR00397 176 KCTGCGTCEKHCVLSEAAIRVL 197 (213)
T ss_pred cCCCcchhhHhCCCCCCeEEEe
Confidence 589999999999998 44444
No 106
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=83.60 E-value=0.5 Score=35.82 Aligned_cols=18 Identities=11% Similarity=-0.129 Sum_probs=12.1
Q ss_pred eecccCceecccCCcccc
Q psy3842 76 LSELSGKRESTCAPAREG 93 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~ 93 (139)
.|+.||.|+.+||.+|+.
T Consensus 126 ~C~~C~~C~~aCP~~A~~ 143 (225)
T TIGR03149 126 LCVGCQYCIAACPYRVRF 143 (225)
T ss_pred hCCcchHHHHhCCCCCcE
Confidence 456677777777777753
No 107
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=83.47 E-value=0.28 Score=38.17 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=18.1
Q ss_pred ceeecccCceecccCCccccc
Q psy3842 74 LFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~ 94 (139)
...|..||.|+.+||++|+..
T Consensus 81 ~~~C~~Cg~C~~~CP~~Ai~~ 101 (295)
T TIGR02494 81 REKCTHCGKCTEACPSGALSI 101 (295)
T ss_pred hhhcCchhHhhccCcHhHHhh
Confidence 446899999999999999854
No 108
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=83.29 E-value=0.49 Score=35.87 Aligned_cols=23 Identities=4% Similarity=-0.029 Sum_probs=18.9
Q ss_pred ceeecccC----------ceecccCCcccccce
Q psy3842 74 LFLSELSG----------KRESTCAPAREGVME 96 (139)
Q Consensus 74 ~~~~~~~g----------~~~~~CPtgal~~~e 96 (139)
+..|+.|+ .|+++||++|+...+
T Consensus 151 ~~kC~~C~~~~~~~g~~P~Cv~~Cp~~Ai~f~~ 183 (225)
T TIGR03149 151 ADKCNFCRDTNLAEGKLPACVESCPTKALTFGD 183 (225)
T ss_pred cccCCCCCcchhhCCCCCcccccCccCCEEEec
Confidence 45889998 799999999986443
No 109
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=82.57 E-value=0.47 Score=31.72 Aligned_cols=20 Identities=5% Similarity=-0.290 Sum_probs=16.8
Q ss_pred eecccCceecccCCcccccc
Q psy3842 76 LSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~ 95 (139)
.|..|+.|+.+||++++...
T Consensus 52 ~Ci~C~~C~~~CP~~ai~~~ 71 (105)
T PRK09624 52 KCVRCYLCYIYCPEPAIYLD 71 (105)
T ss_pred HCcChhhHHhhCCHhhEEec
Confidence 57889999999999987543
No 110
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=82.22 E-value=0.59 Score=43.52 Aligned_cols=20 Identities=10% Similarity=-0.125 Sum_probs=17.4
Q ss_pred eeecccCceecccCCccccc
Q psy3842 75 FLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~ 94 (139)
..|..||.|+.+||++|+..
T Consensus 683 ~~Ci~Cg~C~~vCP~~ai~~ 702 (1165)
T TIGR02176 683 DNCIQCNQCAFVCPHAAIRP 702 (1165)
T ss_pred ccCCCccchHHhcChhhccc
Confidence 36899999999999999853
No 111
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=82.18 E-value=0.44 Score=38.79 Aligned_cols=20 Identities=10% Similarity=-0.072 Sum_probs=17.8
Q ss_pred eeecccCceecccCCccccc
Q psy3842 75 FLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~ 94 (139)
..|..||.|+.+||++|+..
T Consensus 50 ~~C~~Cg~Cv~~CP~~Ai~~ 69 (374)
T TIGR02512 50 SNCIGCGQCSLVCPVGAITE 69 (374)
T ss_pred ccCcCccCHHHhCCCChhhh
Confidence 46899999999999999864
No 112
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=82.16 E-value=0.35 Score=23.35 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=12.3
Q ss_pred eecccCceecccCC
Q psy3842 76 LSELSGKRESTCAP 89 (139)
Q Consensus 76 ~~~~~g~~~~~CPt 89 (139)
.|..|+.|+.+||+
T Consensus 9 rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 9 RCIGCGACEVACPV 22 (22)
T ss_pred cccCchhHHHhhCc
Confidence 58899999999985
No 113
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=82.00 E-value=0.4 Score=33.47 Aligned_cols=19 Identities=11% Similarity=-0.202 Sum_probs=16.6
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|..||.|+.+||.+++..
T Consensus 60 ~Ci~C~~C~~~CP~~ai~~ 78 (133)
T PRK09625 60 ICINCFNCWVYCPDAAILS 78 (133)
T ss_pred HCcChhhHHHhCCHhheEe
Confidence 5789999999999998753
No 114
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=81.99 E-value=0.56 Score=38.17 Aligned_cols=18 Identities=11% Similarity=0.065 Sum_probs=16.3
Q ss_pred eecccCceecccCCcccc
Q psy3842 76 LSELSGKRESTCAPAREG 93 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~ 93 (139)
.|..||.|+.+||++|+.
T Consensus 8 kCi~Cg~Cv~~CP~~ai~ 25 (374)
T TIGR02512 8 KCIGCGRCVRACTNVQIV 25 (374)
T ss_pred hCCcChHhhhhCCHhhcc
Confidence 588999999999999975
No 115
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=81.88 E-value=0.57 Score=37.94 Aligned_cols=19 Identities=11% Similarity=0.217 Sum_probs=16.9
Q ss_pred cceeecccCceecccCCcc
Q psy3842 73 KLFLSELSGKRESTCAPAR 91 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtga 91 (139)
+...|+.||+|..+||++.
T Consensus 305 g~~~CvgCGrC~~~CP~~I 323 (344)
T PRK15055 305 GYHMCVGCGRCDDRCPEYI 323 (344)
T ss_pred chhhCcCcCccccccCCCC
Confidence 5568999999999999985
No 116
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=80.41 E-value=0.6 Score=39.28 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=11.8
Q ss_pred eecccC--ceecccCCcccc
Q psy3842 76 LSELSG--KRESTCAPAREG 93 (139)
Q Consensus 76 ~~~~~g--~~~~~CPtgal~ 93 (139)
.|..|+ .|+.+||++|+.
T Consensus 182 ~C~HC~nP~CV~ACPtGAI~ 201 (492)
T TIGR01660 182 LCEHCLNPACVASCPSGAIY 201 (492)
T ss_pred cCcCCCcccchhhCccCCeE
Confidence 466665 677777777764
No 117
>PRK13795 hypothetical protein; Provisional
Probab=80.36 E-value=0.49 Score=41.24 Aligned_cols=20 Identities=10% Similarity=0.037 Sum_probs=17.3
Q ss_pred eecccCceecccCCcccccc
Q psy3842 76 LSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~ 95 (139)
.|..||.|+.+||++++...
T Consensus 582 ~C~~Cg~C~~~CP~~ai~~~ 601 (636)
T PRK13795 582 ECVGCGVCVGACPTGAIRIE 601 (636)
T ss_pred cCCCHhHHHHhCCcccEEee
Confidence 68899999999999997653
No 118
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=80.25 E-value=0.84 Score=33.20 Aligned_cols=19 Identities=11% Similarity=-0.092 Sum_probs=15.5
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|+.||.|+.+||++|+..
T Consensus 88 ~C~~C~~C~~~CP~~ai~~ 106 (181)
T PRK10330 88 RCIGCKTCVVACPYGAMEV 106 (181)
T ss_pred hCCCcchhhhhCCccCeEe
Confidence 4678899999999998754
No 119
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=80.24 E-value=0.71 Score=33.94 Aligned_cols=20 Identities=5% Similarity=-0.125 Sum_probs=16.9
Q ss_pred cceeecccCceecccCCccc
Q psy3842 73 KLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal 92 (139)
....|+.||.|+.+||++++
T Consensus 60 ~~~kCi~Cg~C~~aCP~~ai 79 (183)
T TIGR00403 60 EFDKCIACEVCVRVCPINLP 79 (183)
T ss_pred CcccCcCcCChhhhCCCCcc
Confidence 34468999999999999975
No 120
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=80.24 E-value=0.61 Score=33.69 Aligned_cols=19 Identities=5% Similarity=-0.153 Sum_probs=16.4
Q ss_pred ceeecccCceecccCCccc
Q psy3842 74 LFLSELSGKRESTCAPARE 92 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal 92 (139)
...|+.||.|+.+||++++
T Consensus 58 ~~~Ci~Cg~C~~aCP~~~~ 76 (167)
T CHL00014 58 FDKCIACEVCVRVCPIDLP 76 (167)
T ss_pred cccCCCcCcHHHhCCCCCc
Confidence 3468999999999999975
No 121
>PRK07118 ferredoxin; Validated
Probab=80.15 E-value=0.51 Score=37.08 Aligned_cols=21 Identities=10% Similarity=-0.065 Sum_probs=17.1
Q ss_pred eecccCceecccCCcccccce
Q psy3842 76 LSELSGKRESTCAPAREGVME 96 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~e 96 (139)
.|..||.|+++||++|+...+
T Consensus 140 ~CigCg~C~~aCp~~AI~~~~ 160 (280)
T PRK07118 140 GCLGLGSCVAACPFDAIHIEN 160 (280)
T ss_pred CCcChhHHHHhCCccCeEccC
Confidence 578899999999999976543
No 122
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=80.02 E-value=0.49 Score=31.39 Aligned_cols=14 Identities=7% Similarity=0.067 Sum_probs=8.0
Q ss_pred CceecccCCccccc
Q psy3842 81 GKRESTCAPAREGV 94 (139)
Q Consensus 81 g~~~~~CPtgal~~ 94 (139)
+.|+.+||++||..
T Consensus 82 PaCv~~Cp~~Al~~ 95 (98)
T PF13247_consen 82 PACVEACPTGALTF 95 (98)
T ss_dssp -HHHHH-TTS-EEE
T ss_pred ChhHHhccccceEE
Confidence 57777788777754
No 123
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=79.96 E-value=0.71 Score=35.14 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=19.7
Q ss_pred eecccCceecccCCcccccc-eeeec
Q psy3842 76 LSELSGKRESTCAPAREGVM-EFLLV 100 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~-e~~l~ 100 (139)
.|..||.|+.+||++|+... +|.+.
T Consensus 178 ~C~~Cg~C~~~CP~~AI~~~~~~~~~ 203 (234)
T TIGR02700 178 KCVGCGKCKEACPYNAIHGGLEYEMR 203 (234)
T ss_pred hCCccchHHhhCCCCceecCCceEEe
Confidence 57899999999999998654 45433
No 124
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=79.87 E-value=0.66 Score=38.26 Aligned_cols=21 Identities=10% Similarity=-0.091 Sum_probs=15.7
Q ss_pred ceeecccCceecccCCccccc
Q psy3842 74 LFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~ 94 (139)
...|..|+.|+++||++|+..
T Consensus 38 ~~~C~~C~~C~~~CP~~AI~~ 58 (411)
T TIGR03224 38 ADVCNGCMACVSPCPTGAIDN 58 (411)
T ss_pred cccCcCHHHHHhhcCccccee
Confidence 346778888888888888763
No 125
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=79.19 E-value=0.65 Score=37.49 Aligned_cols=18 Identities=11% Similarity=0.028 Sum_probs=16.3
Q ss_pred eecccCceecccCCcccc
Q psy3842 76 LSELSGKRESTCAPAREG 93 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~ 93 (139)
.|..||.|+.+||++|+.
T Consensus 215 ~Ci~Cg~Ci~~CP~~a~~ 232 (341)
T TIGR02066 215 KCIYCGNCYTMCPAMPIF 232 (341)
T ss_pred cCCcCCchHHhCchhhcc
Confidence 588999999999999985
No 126
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=78.82 E-value=0.73 Score=33.51 Aligned_cols=21 Identities=5% Similarity=-0.143 Sum_probs=18.0
Q ss_pred eecccCceecccCCcccccce
Q psy3842 76 LSELSGKRESTCAPAREGVME 96 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~e 96 (139)
.|..||.|+.+||-||+....
T Consensus 83 kCiGC~~C~~aCPfGai~~~~ 103 (165)
T COG1142 83 KCIGCKLCVVACPFGAITMVS 103 (165)
T ss_pred hccCcchhhhcCCcceEEEEe
Confidence 578999999999999986544
No 127
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=78.76 E-value=0.92 Score=34.14 Aligned_cols=20 Identities=5% Similarity=0.119 Sum_probs=17.3
Q ss_pred cceeecccCceecccCCccc
Q psy3842 73 KLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal 92 (139)
+...|+.||+|..+||++.-
T Consensus 192 ~~~~C~~Cg~C~~~CP~~I~ 211 (220)
T TIGR00384 192 GVWRCTTCMNCSEVCPKGVN 211 (220)
T ss_pred CCccCccccccccccCCCCC
Confidence 55689999999999999864
No 128
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=78.60 E-value=0.6 Score=39.81 Aligned_cols=18 Identities=6% Similarity=-0.118 Sum_probs=12.6
Q ss_pred eecccCceecccCCcccc
Q psy3842 76 LSELSGKRESTCAPAREG 93 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~ 93 (139)
.|+.||.|+.+||++|+.
T Consensus 542 ~C~~Cg~C~~~CP~~Ai~ 559 (564)
T PRK12771 542 KCTGCHICADVCPCGAIE 559 (564)
T ss_pred cCcChhHHHhhcCcCceE
Confidence 466777777777777764
No 129
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=78.32 E-value=0.69 Score=35.67 Aligned_cols=19 Identities=5% Similarity=-0.139 Sum_probs=15.4
Q ss_pred ceeecccCceecccCCccc
Q psy3842 74 LFLSELSGKRESTCAPARE 92 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal 92 (139)
...|+.|++|+++||+++.
T Consensus 200 ~~~C~~C~~C~~vCP~~~v 218 (255)
T TIGR02163 200 REKCTNCMDCFNVCPEPQV 218 (255)
T ss_pred cccCeEcCCccCcCCCCce
Confidence 3458899999999999863
No 130
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=77.77 E-value=0.78 Score=42.16 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=17.4
Q ss_pred eecccCceecccCCcccccc
Q psy3842 76 LSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~ 95 (139)
.|..||.|+++||++|+...
T Consensus 922 ~C~~CG~C~~vCP~~a~~~~ 941 (1012)
T TIGR03315 922 MCNECGNCATFCPYDGAPYK 941 (1012)
T ss_pred cccccchHHHhCCCCcccce
Confidence 49999999999999998543
No 131
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=77.07 E-value=0.93 Score=35.92 Aligned_cols=16 Identities=13% Similarity=0.056 Sum_probs=14.0
Q ss_pred eecccCceecccCCcc
Q psy3842 76 LSELSGKRESTCAPAR 91 (139)
Q Consensus 76 ~~~~~g~~~~~CPtga 91 (139)
.|..||.|+.+||..+
T Consensus 170 ~C~~Cg~C~~~Cp~~a 185 (314)
T TIGR02912 170 RCIGCGACVKVCKKKA 185 (314)
T ss_pred cCCcchHHHHhcChhh
Confidence 5889999999999754
No 132
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=76.89 E-value=0.85 Score=35.08 Aligned_cols=18 Identities=6% Similarity=-0.186 Sum_probs=11.3
Q ss_pred eecccCceecccCCcccc
Q psy3842 76 LSELSGKRESTCAPAREG 93 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~ 93 (139)
.|..|+.|+.+||.+|+.
T Consensus 131 ~CigC~~Cv~aCP~~Ai~ 148 (244)
T PRK14993 131 RCVGCAYCVQACPYDARF 148 (244)
T ss_pred HCCCHHHHHHhcCCCCCE
Confidence 355666666666666654
No 133
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=76.84 E-value=0.75 Score=36.88 Aligned_cols=17 Identities=6% Similarity=-0.121 Sum_probs=8.5
Q ss_pred ecccCceecccCCcccc
Q psy3842 77 SELSGKRESTCAPAREG 93 (139)
Q Consensus 77 ~~~~g~~~~~CPtgal~ 93 (139)
|..|+.|+.+||.+|+.
T Consensus 164 CiGCg~Cv~ACPygAi~ 180 (321)
T TIGR03478 164 CKGYRYCVEACPYKKVY 180 (321)
T ss_pred CcchHHHHHhCCCCCcE
Confidence 44455555555555543
No 134
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=76.66 E-value=1 Score=34.66 Aligned_cols=22 Identities=5% Similarity=-0.094 Sum_probs=17.9
Q ss_pred ceeecccC---------ceecccCCcccccc
Q psy3842 74 LFLSELSG---------KRESTCAPAREGVM 95 (139)
Q Consensus 74 ~~~~~~~g---------~~~~~CPtgal~~~ 95 (139)
+..|+.|+ .|+.+||++|+...
T Consensus 156 ~~KC~~C~~r~~~G~~PaCv~~CP~~Al~~g 186 (244)
T PRK14993 156 ADKCTFCVHRLEAGLLPACVESCVGGARIIG 186 (244)
T ss_pred cccCcCCcchhhCCCCcccchhcccCCEEEc
Confidence 45788886 89999999998643
No 135
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=76.40 E-value=0.72 Score=35.71 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=16.2
Q ss_pred eecccCceecccCCc--cccc
Q psy3842 76 LSELSGKRESTCAPA--REGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtg--al~~ 94 (139)
.|+.||.|+.+||++ |+.+
T Consensus 185 ~C~gCG~C~~aCP~~~~AI~v 205 (254)
T PRK09476 185 ACTGCGKCEKACVLEKAAIKV 205 (254)
T ss_pred HCcCcChhhHhcCCCcceEEE
Confidence 688999999999998 5544
No 136
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=75.92 E-value=1.4 Score=38.37 Aligned_cols=19 Identities=5% Similarity=-0.104 Sum_probs=14.8
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|+.|+.|+.+||++|+..
T Consensus 86 ~C~~C~~C~~~CP~~ai~~ 104 (654)
T PRK12769 86 KCIGCKSCVVACPFGTMQI 104 (654)
T ss_pred cccCcChhcccCCccCeee
Confidence 5778888888888888753
No 137
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=75.81 E-value=1.1 Score=41.78 Aligned_cols=21 Identities=10% Similarity=0.021 Sum_probs=17.5
Q ss_pred ceeecccCceecccCCc--cccc
Q psy3842 74 LFLSELSGKRESTCAPA--REGV 94 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtg--al~~ 94 (139)
...|+.||.|+++||++ |+..
T Consensus 738 ~~~C~gCg~Cv~~CP~~~~Al~m 760 (1165)
T TIGR02176 738 PLDCTGCGNCVDICPAKEKALVM 760 (1165)
T ss_pred cccCcCccchhhhcCCCCccccc
Confidence 45799999999999996 6643
No 138
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=75.57 E-value=1 Score=39.72 Aligned_cols=17 Identities=12% Similarity=0.126 Sum_probs=15.6
Q ss_pred eecccCceecccCCccc
Q psy3842 76 LSELSGKRESTCAPARE 92 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal 92 (139)
.|..||.|+++||.+.+
T Consensus 371 ~CI~CG~Cv~aCP~~ll 387 (695)
T PRK05035 371 PCIRCGACADACPASLL 387 (695)
T ss_pred hcCCcccHHHHCCccch
Confidence 68899999999999987
No 139
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=75.46 E-value=1.3 Score=33.30 Aligned_cols=21 Identities=10% Similarity=0.078 Sum_probs=17.0
Q ss_pred ceeeccc------C---ceecccCCccccc
Q psy3842 74 LFLSELS------G---KRESTCAPAREGV 94 (139)
Q Consensus 74 ~~~~~~~------g---~~~~~CPtgal~~ 94 (139)
|..|++| | +|+++|||+|+..
T Consensus 126 ~~KCt~C~~ri~~g~~PaCV~~CP~~A~~f 155 (203)
T COG0437 126 VDKCTFCVDRVAVGKLPACVEACPTGALIF 155 (203)
T ss_pred ccccCcchhhHhcCCCCcccccCCcccccc
Confidence 6677877 6 8999999999864
No 140
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=75.31 E-value=1.1 Score=36.12 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=27.7
Q ss_pred CCEEEcCCHHHHHHHHHHHHHHHH--------------hCCCCCCCcCCC---CcchhHHHH
Q psy3842 3 GWRVKTNSEMTRRAREGVMEFLLV--------------NHPLDCPICDQG---GECDLQDQS 47 (139)
Q Consensus 3 Gm~V~T~s~~v~~~r~~~lelll~--------------~h~~~C~~C~~~---g~C~Lq~l~ 47 (139)
++.+.++++++....+.++++... .++..|..|... ..|.++.+.
T Consensus 69 ~~~~~~~~~~l~~~~~~~I~~~~~~~~~~~d~~~~~~~~~~~~C~hC~~p~Cv~aCP~gAi~ 130 (328)
T PRK10882 69 GEQTWDNPDKLSPYTNNIIKVWKSGTGVNKDQEENGYAYIKKQCMHCVDPNCVSVCPVSALT 130 (328)
T ss_pred ccceecccccccccccceEEEEecCccccccccccccccccccCCCcCchhhHhhCCCCCEE
Confidence 456677777766666656654432 356788888643 456665554
No 141
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=75.27 E-value=1.5 Score=34.17 Aligned_cols=20 Identities=5% Similarity=-0.189 Sum_probs=16.1
Q ss_pred ceeecccCceecccCCcccc
Q psy3842 74 LFLSELSGKRESTCAPAREG 93 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~ 93 (139)
...|..|+.|..+||+++..
T Consensus 207 ~~~C~~C~~C~~~CP~~~i~ 226 (271)
T PRK09477 207 RQKCTRCMDCFHVCPEPQVL 226 (271)
T ss_pred cccCcccCCcCCcCCCccee
Confidence 34588999999999998743
No 142
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=75.03 E-value=0.94 Score=32.30 Aligned_cols=13 Identities=8% Similarity=0.059 Sum_probs=8.6
Q ss_pred ceecccCCccccc
Q psy3842 82 KRESTCAPAREGV 94 (139)
Q Consensus 82 ~~~~~CPtgal~~ 94 (139)
.|+.+||++|+..
T Consensus 138 ~Cv~~Cp~~Ai~~ 150 (161)
T TIGR02951 138 ACVDACPMRALDF 150 (161)
T ss_pred cchhhccccceEE
Confidence 6777777776643
No 143
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=74.99 E-value=1.8 Score=34.22 Aligned_cols=19 Identities=11% Similarity=-0.170 Sum_probs=16.6
Q ss_pred eeecccCceecccCCcccc
Q psy3842 75 FLSELSGKRESTCAPAREG 93 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~ 93 (139)
..|..|+.|..+||++++.
T Consensus 247 ~~Ci~C~~C~~~CP~~ai~ 265 (312)
T PRK14028 247 SKCIMCRKCWLYCPDDAII 265 (312)
T ss_pred ccCcCcccccccCChhhhh
Confidence 3689999999999999864
No 144
>PRK09898 hypothetical protein; Provisional
Probab=74.37 E-value=1.5 Score=32.64 Aligned_cols=20 Identities=5% Similarity=-0.056 Sum_probs=16.0
Q ss_pred eecccC--ceecccCCcccccc
Q psy3842 76 LSELSG--KRESTCAPAREGVM 95 (139)
Q Consensus 76 ~~~~~g--~~~~~CPtgal~~~ 95 (139)
.|..|+ .|+.+||++|+...
T Consensus 122 ~C~~C~~~~C~~~CP~gAi~~~ 143 (208)
T PRK09898 122 TCRQCKEPQCMNVCPIGAITWQ 143 (208)
T ss_pred cCCCccCcchhhhCCcceEEee
Confidence 578887 79999999997643
No 145
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=74.24 E-value=1.3 Score=35.62 Aligned_cols=16 Identities=6% Similarity=-0.139 Sum_probs=8.6
Q ss_pred ecccCceecccCCccc
Q psy3842 77 SELSGKRESTCAPARE 92 (139)
Q Consensus 77 ~~~~g~~~~~CPtgal 92 (139)
|+.|+.|+.+||.+++
T Consensus 145 CigCg~Cv~aCP~gai 160 (328)
T PRK10882 145 CTGCRYCMVACPFNVP 160 (328)
T ss_pred cCcccHHHHhCCccce
Confidence 4455555555555554
No 146
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=74.18 E-value=1.4 Score=39.91 Aligned_cols=38 Identities=5% Similarity=-0.213 Sum_probs=28.5
Q ss_pred ceecccCCcccccc--------------eeeeccccccCCCCCCCCcchhHH
Q psy3842 82 KRESTCAPAREGVM--------------EFLLVNHPLDCPICDQGGECDLQD 119 (139)
Q Consensus 82 ~~~~~CPtgal~~~--------------e~~l~~~~~~C~~C~~g~~~eL~~ 119 (139)
..-.+||+||++.. .|.+..+++.|++|+.+|...++.
T Consensus 25 ~~~~~~pvga~~~~~~~~~~e~~yr~~~~wd~~~~~t~c~~C~~gC~l~v~V 76 (912)
T TIGR03479 25 AFGFLKPIQDPLKAYPYRDWEDLYRKEWTWDKVGRGAHLNNCTGSCAFYVYV 76 (912)
T ss_pred hhccccccccccccCCCchHHHHhhhhhcccceeccccCCCccCCCCeEEEE
Confidence 47789999998721 133555788999999999887753
No 147
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=74.15 E-value=1.2 Score=35.72 Aligned_cols=20 Identities=10% Similarity=-0.021 Sum_probs=17.8
Q ss_pred eecccCceecccCCcccccc
Q psy3842 76 LSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~ 95 (139)
.|..||.|+..||++|++..
T Consensus 194 kc~~c~~cv~~cp~~Ai~~~ 213 (354)
T COG2768 194 KCYDCGLCVKICPVGAITLT 213 (354)
T ss_pred cccccchhhhhCCCcceecc
Confidence 67899999999999998765
No 148
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=74.02 E-value=1.1 Score=36.97 Aligned_cols=20 Identities=5% Similarity=-0.170 Sum_probs=16.8
Q ss_pred eecccCceecccCC-cccccc
Q psy3842 76 LSELSGKRESTCAP-AREGVM 95 (139)
Q Consensus 76 ~~~~~g~~~~~CPt-gal~~~ 95 (139)
.|+.||.|+.+||+ +|+...
T Consensus 378 ~C~~Cg~C~~~CP~~~Ai~~~ 398 (420)
T PRK08318 378 ECVGCNLCAHVCPVEGCITMG 398 (420)
T ss_pred hCcccchHHhhCCCCCCEEEe
Confidence 58899999999999 897543
No 149
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=73.88 E-value=1.7 Score=37.89 Aligned_cols=22 Identities=5% Similarity=0.051 Sum_probs=18.2
Q ss_pred ceeecccCc--eecccCCcccccc
Q psy3842 74 LFLSELSGK--RESTCAPAREGVM 95 (139)
Q Consensus 74 ~~~~~~~g~--~~~~CPtgal~~~ 95 (139)
+..|..|+. |+.+||++|+...
T Consensus 53 ~~~C~~C~~~~C~~~CP~~ai~~~ 76 (654)
T PRK12769 53 AVTCHHCEDAPCARSCPNGAISHV 76 (654)
T ss_pred CccCCCCCChhHhhhCCccceecc
Confidence 457889986 9999999997653
No 150
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=73.54 E-value=2 Score=34.71 Aligned_cols=18 Identities=6% Similarity=-0.112 Sum_probs=14.8
Q ss_pred ecccCceecccCCccccc
Q psy3842 77 SELSGKRESTCAPAREGV 94 (139)
Q Consensus 77 ~~~~g~~~~~CPtgal~~ 94 (139)
|-.+|.|+++||++|++.
T Consensus 183 ~c~~~~Cv~~CP~~Ai~~ 200 (341)
T TIGR02066 183 VCEIPSVVAACPTGALKP 200 (341)
T ss_pred hcCCCceEeeCchhhcee
Confidence 335689999999999775
No 151
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=73.43 E-value=3.1 Score=29.94 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=23.9
Q ss_pred CCCCCCCCcchhHHHHHHhCCCCCCCCC
Q psy3842 106 CPICDQGGECDLQDQSMAFGSDRSRFTD 133 (139)
Q Consensus 106 C~~C~~g~~~eL~~~~~~~gv~~~rf~~ 133 (139)
...|+.+++++||+++..+|++..+|.+
T Consensus 68 i~~C~~~g~c~l~~~a~~~gv~~~~~~~ 95 (165)
T TIGR01944 68 INKCPPGGEAVILALAELLGVEPIPQPL 95 (165)
T ss_pred cCcCccccHHHHHHHHHHcCCCcccCCc
Confidence 5568889999999999999998887654
No 152
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=72.57 E-value=1.8 Score=39.91 Aligned_cols=15 Identities=13% Similarity=0.180 Sum_probs=12.3
Q ss_pred ccCceecccCCcccc
Q psy3842 79 LSGKRESTCAPAREG 93 (139)
Q Consensus 79 ~~g~~~~~CPtgal~ 93 (139)
.||.|+++||++|..
T Consensus 894 ~C~~C~~vCP~~A~~ 908 (1019)
T PRK09853 894 VCEKCVDVCPNRANV 908 (1019)
T ss_pred ccchhhhhCCccccc
Confidence 459999999999943
No 153
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=72.45 E-value=0.86 Score=36.61 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=17.7
Q ss_pred eeecccCceecccCCcccccc
Q psy3842 75 FLSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~~ 95 (139)
..|+.||.|+.+||++++...
T Consensus 12 ~~C~gCg~C~~~CP~~aI~~~ 32 (341)
T PRK09326 12 DVCTACGACEAVCPIGAITVD 32 (341)
T ss_pred ccCcChHHHHHhCCHhhhecc
Confidence 368999999999999997543
No 154
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=72.36 E-value=1.6 Score=35.01 Aligned_cols=18 Identities=6% Similarity=0.045 Sum_probs=15.9
Q ss_pred eecccC--ceecccCCcccc
Q psy3842 76 LSELSG--KRESTCAPAREG 93 (139)
Q Consensus 76 ~~~~~g--~~~~~CPtgal~ 93 (139)
.|..|+ .|+++||++|+.
T Consensus 130 ~C~hC~nP~Cv~aCPtgAI~ 149 (321)
T TIGR03478 130 ICNHCTNPACLAACPTGAIY 149 (321)
T ss_pred cCCCCCCccchhhCCcCcEE
Confidence 677888 899999999985
No 155
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=72.34 E-value=1.5 Score=31.17 Aligned_cols=18 Identities=6% Similarity=-0.007 Sum_probs=11.0
Q ss_pred eecccC--ceecccCCcccc
Q psy3842 76 LSELSG--KRESTCAPAREG 93 (139)
Q Consensus 76 ~~~~~g--~~~~~CPtgal~ 93 (139)
.|..|+ .|+.+||++|+.
T Consensus 63 ~C~~C~~~~C~~~CP~~ai~ 82 (161)
T TIGR02951 63 SCNHCADPACVKNCPTGAMY 82 (161)
T ss_pred cCCCcCCcchHHhCCCCCEE
Confidence 455566 666666666653
No 156
>PRK13984 putative oxidoreductase; Provisional
Probab=71.78 E-value=1.7 Score=37.35 Aligned_cols=21 Identities=10% Similarity=-0.007 Sum_probs=17.4
Q ss_pred ceeecccCceecccCCccccc
Q psy3842 74 LFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~ 94 (139)
...|..||.|+.+||++++..
T Consensus 44 ~~~Ci~C~~C~~~Cp~~ai~~ 64 (604)
T PRK13984 44 WEKCIGCGTCSKICPTDAITM 64 (604)
T ss_pred hhhCcCccchhhhCCccceEe
Confidence 345889999999999998653
No 157
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=71.59 E-value=1.8 Score=32.07 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=15.9
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.||.|+.|+..|||..+..
T Consensus 146 lCTGC~lCva~CPtdci~m 164 (198)
T COG2878 146 LCTGCDLCVAPCPTDCIEM 164 (198)
T ss_pred HhcCCCcccCCCCCCceee
Confidence 5788999999999998754
No 158
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=71.51 E-value=1.8 Score=34.01 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=15.0
Q ss_pred cceeecccCceecccCCcccccc
Q psy3842 73 KLFLSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal~~~ 95 (139)
...-|..||.|.-+||..|+...
T Consensus 97 ~~~lC~GCgaC~~~CP~~AI~~~ 119 (284)
T COG1149 97 NPDLCEGCGACSIVCPEPAIEEE 119 (284)
T ss_pred CcccccCcccceeeCCCcccccc
Confidence 34467777777777777776543
No 159
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=71.10 E-value=0.85 Score=38.06 Aligned_cols=18 Identities=11% Similarity=-0.132 Sum_probs=15.6
Q ss_pred ceeecccCceecccCCcc
Q psy3842 74 LFLSELSGKRESTCAPAR 91 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtga 91 (139)
...|+.|+.|+.+||++.
T Consensus 230 ~~~Ci~C~~Cv~vCP~gi 247 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTGI 247 (434)
T ss_pred CCCCCChhhhHHhCCCCC
Confidence 347899999999999994
No 160
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=71.04 E-value=1.5 Score=34.53 Aligned_cols=19 Identities=11% Similarity=-0.151 Sum_probs=13.4
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|..|+.|+.+||.+++..
T Consensus 125 kCigC~~Cv~aCP~~a~~~ 143 (283)
T TIGR01582 125 KCIGCGYCIVGCPFNIPRY 143 (283)
T ss_pred HCCcchHHHhhCCCCCcEE
Confidence 4667777777777777643
No 161
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=70.66 E-value=1.4 Score=34.02 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=16.4
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|..|+.|+.+||++++..
T Consensus 170 ~C~~C~~C~~~CP~~vi~~ 188 (259)
T cd07030 170 DCDGCGKCVEECPRGVLEL 188 (259)
T ss_pred hCCChHHHHHhCCccceEc
Confidence 4778999999999999854
No 162
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=70.22 E-value=1.6 Score=30.53 Aligned_cols=19 Identities=5% Similarity=-0.083 Sum_probs=16.3
Q ss_pred eecccC-----ceecccCCccccc
Q psy3842 76 LSELSG-----KRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g-----~~~~~CPtgal~~ 94 (139)
.|+.|| .|+.+||++++..
T Consensus 9 ~C~gC~~~~~~~Cv~~CP~~ai~~ 32 (132)
T TIGR02060 9 KCDGCKAGEKTACVYICPNDLMHL 32 (132)
T ss_pred cccCccCCchhcCHhhcCccceEe
Confidence 578999 9999999998743
No 163
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=70.02 E-value=2.1 Score=34.67 Aligned_cols=20 Identities=15% Similarity=0.059 Sum_probs=17.2
Q ss_pred ceeecccCceecccCCcccc
Q psy3842 74 LFLSELSGKRESTCAPAREG 93 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~ 93 (139)
...|..||.|.++||+.+..
T Consensus 6 ~~~Ci~Cg~C~~~CP~~~~~ 25 (396)
T PRK11168 6 FDSCIKCTVCTTACPVARVN 25 (396)
T ss_pred hhhcCCCCCCCccCCCcccC
Confidence 45799999999999999753
No 164
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=69.84 E-value=1.1 Score=37.77 Aligned_cols=33 Identities=12% Similarity=-0.030 Sum_probs=23.1
Q ss_pred eecccCceecccCCcccccceeeeccccccCCCCC
Q psy3842 76 LSELSGKRESTCAPAREGVMEFLLVNHPLDCPICD 110 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~e~~l~~~~~~C~~C~ 110 (139)
.|..|+.|+.+||.+|+..-.. ......|.+|.
T Consensus 215 kCiGCg~CV~ACPygAI~~n~~--~g~~~KCd~C~ 247 (492)
T TIGR01660 215 KCRGWRMCISGCPYKKIYFNWK--TGKSEKCIFCY 247 (492)
T ss_pred hccChHHHHHhCCCCCcEecCC--CCccccCCCCh
Confidence 5789999999999999754322 12344677764
No 165
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=69.75 E-value=2 Score=32.33 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=12.1
Q ss_pred eecccCceecccCCcccc
Q psy3842 76 LSELSGKRESTCAPAREG 93 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~ 93 (139)
.|..||-|+.+||-||..
T Consensus 101 ~CIGC~yCi~ACPyga~~ 118 (203)
T COG0437 101 LCIGCGYCIAACPYGAPQ 118 (203)
T ss_pred cccCchHHHhhCCCCCce
Confidence 456777777777777754
No 166
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=69.47 E-value=1.2 Score=38.37 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=13.9
Q ss_pred eecccCceecccCCccc
Q psy3842 76 LSELSGKRESTCAPARE 92 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal 92 (139)
.|..||.|+++||++|+
T Consensus 579 ~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 579 LCTGCGVCAQICPFDAI 595 (595)
T ss_pred CCcCHHHHHhhCccccC
Confidence 58888888888888874
No 167
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=69.09 E-value=1.3 Score=36.49 Aligned_cols=20 Identities=15% Similarity=-0.086 Sum_probs=16.9
Q ss_pred eeecccCceecccCCccccc
Q psy3842 75 FLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~ 94 (139)
..|..||.|+.+||++|+..
T Consensus 330 ~~Ci~CGaCV~aCP~~AI~~ 349 (391)
T TIGR03287 330 EDCFGCGYCAEICPGGAFEV 349 (391)
T ss_pred HhCcChHHHHhhCCccceEE
Confidence 35889999999999999754
No 168
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=69.02 E-value=2.1 Score=37.19 Aligned_cols=19 Identities=5% Similarity=-0.092 Sum_probs=14.3
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|..|+.|+.+||++|+..
T Consensus 86 ~C~gC~~C~~~CP~~ai~~ 104 (639)
T PRK12809 86 KCIGCKRCAIACPFGVVEM 104 (639)
T ss_pred hCcchhhHhhhcCCCCEEc
Confidence 4677888888888887643
No 169
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=68.81 E-value=1.2 Score=26.21 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=11.7
Q ss_pred ecccCceecccCCcccc
Q psy3842 77 SELSGKRESTCAPAREG 93 (139)
Q Consensus 77 ~~~~g~~~~~CPtgal~ 93 (139)
|+.||.|+.+||++..+
T Consensus 2 C~~Cg~C~~~CP~~~~~ 18 (61)
T PF13534_consen 2 CTQCGYCVPACPSYIAT 18 (61)
T ss_dssp ----STTGGGSHHHHHC
T ss_pred CCCCCcCcccCCCcccc
Confidence 68899999999998764
No 170
>PF04879 Molybdop_Fe4S4: Molybdopterin oxidoreductase Fe4S4 domain; InterPro: IPR006963 The molybdopterin oxidoreductase Fe4S4 domain is found in a number of reductase/dehydrogenase families, which include the periplasmic nitrate reductase precursor and the formate dehydrogenase alpha chain [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2VPZ_A 2VPY_A 2VPW_A 2VPX_A 2NYA_A 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 ....
Probab=68.57 E-value=1.3 Score=25.68 Aligned_cols=19 Identities=32% Similarity=0.651 Sum_probs=13.1
Q ss_pred cccccCCCCCCCCcchhHH
Q psy3842 101 NHPLDCPICDQGGECDLQD 119 (139)
Q Consensus 101 ~~~~~C~~C~~g~~~eL~~ 119 (139)
..++.|++|+.+|..++..
T Consensus 3 ~~~t~C~~C~~gC~i~~~v 21 (55)
T PF04879_consen 3 TVPTVCPYCSSGCGIDVYV 21 (55)
T ss_dssp EEEEE-SSCTT--EEEEEE
T ss_pred EEeeECcCCcCCCcEEEEE
Confidence 4578999999999988865
No 171
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=68.01 E-value=1.2 Score=33.97 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=16.3
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|..|+.|+.+||++++..
T Consensus 175 ~C~~C~~C~~aCP~~ai~~ 193 (228)
T TIGR03294 175 LCMGCGTCAAACPTRAIEM 193 (228)
T ss_pred hCcChhHHHHhCCHhhEEE
Confidence 5778999999999999754
No 172
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=66.96 E-value=2.8 Score=34.92 Aligned_cols=18 Identities=17% Similarity=-0.003 Sum_probs=15.4
Q ss_pred eeecccCceecccCCccc
Q psy3842 75 FLSELSGKRESTCAPARE 92 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal 92 (139)
..|..||.|.++||.+.+
T Consensus 363 ~~Ci~Cg~C~~vCP~~l~ 380 (435)
T TIGR01945 363 KPCIRCGKCVQVCPMNLL 380 (435)
T ss_pred CcCcCccchhhhCccchh
Confidence 478899999999999853
No 173
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=66.95 E-value=2.7 Score=31.90 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=17.5
Q ss_pred cceeecccCceecccCCccc
Q psy3842 73 KLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal 92 (139)
+...|+.||+|..+||.+..
T Consensus 196 ~i~~C~~Cg~C~~~CP~gi~ 215 (232)
T PRK05950 196 GVFRCHTIMNCVEVCPKGLN 215 (232)
T ss_pred ccccCcCcCCcCccccCCCC
Confidence 56789999999999999864
No 174
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=66.83 E-value=1.7 Score=28.71 Aligned_cols=14 Identities=7% Similarity=-0.031 Sum_probs=12.1
Q ss_pred CceecccCCccccc
Q psy3842 81 GKRESTCAPAREGV 94 (139)
Q Consensus 81 g~~~~~CPtgal~~ 94 (139)
..|+.+||++|+..
T Consensus 37 k~C~~aCPagA~~~ 50 (95)
T PRK15449 37 ELLVKACPAGLYKK 50 (95)
T ss_pred hHHHHHCCHhhcEe
Confidence 48999999999854
No 175
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=66.76 E-value=3.3 Score=32.66 Aligned_cols=19 Identities=21% Similarity=0.097 Sum_probs=17.1
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|..||.|.++|+-+|+..
T Consensus 70 ~C~~CG~C~~vC~f~Ai~~ 88 (284)
T COG1149 70 KCIRCGKCAEVCRFGAIVV 88 (284)
T ss_pred hccccCcHHHhCCCCeEEE
Confidence 4999999999999999953
No 176
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=66.74 E-value=5.8 Score=29.32 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=22.3
Q ss_pred CCCCCCCcchhHHHHHHhCCCCCCCC
Q psy3842 107 PICDQGGECDLQDQSMAFGSDRSRFT 132 (139)
Q Consensus 107 ~~C~~g~~~eL~~~~~~~gv~~~rf~ 132 (139)
..|.++++|+||+++..+|++..+|.
T Consensus 71 ~~C~~~G~c~lq~la~~~Gv~~~~~~ 96 (191)
T PRK05113 71 NKCPPGGEATMLKLAELLGVEPQPLD 96 (191)
T ss_pred CcCCCCchHHHHHHHHHhCCCcccCc
Confidence 45788999999999999999877764
No 177
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=66.42 E-value=2.5 Score=29.58 Aligned_cols=20 Identities=10% Similarity=0.253 Sum_probs=17.3
Q ss_pred cceeecccCceecccCCccc
Q psy3842 73 KLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal 92 (139)
....|+.||.|..+||.+..
T Consensus 44 ~~~~C~~Cg~C~~~CP~~i~ 63 (144)
T TIGR03290 44 DLWMCTTCYTCQERCPRDVK 63 (144)
T ss_pred CCCcCcCcCchhhhcCCCCC
Confidence 45589999999999999875
No 178
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=66.19 E-value=1.5 Score=36.11 Aligned_cols=19 Identities=11% Similarity=-0.031 Sum_probs=16.2
Q ss_pred eecccCcee--cccCCccccc
Q psy3842 76 LSELSGKRE--STCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~--~~CPtgal~~ 94 (139)
.|+.|+.|. ++||++++..
T Consensus 303 kCi~Cg~C~~~~aCPt~AI~~ 323 (391)
T TIGR03287 303 RCENCDPCLVEEACPVPAIKK 323 (391)
T ss_pred hCcCCCCCcCCcCCCHhhEec
Confidence 588999995 9999999763
No 179
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=65.49 E-value=2.3 Score=25.92 Aligned_cols=14 Identities=7% Similarity=0.159 Sum_probs=11.4
Q ss_pred ceecccCCcccccc
Q psy3842 82 KRESTCAPAREGVM 95 (139)
Q Consensus 82 ~~~~~CPtgal~~~ 95 (139)
+.++.||.|||...
T Consensus 49 ~~v~~CPSGAL~~~ 62 (64)
T PF06902_consen 49 EAVDRCPSGALSYW 62 (64)
T ss_pred HHHHcCCccCcEEe
Confidence 56789999999754
No 180
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=65.42 E-value=3 Score=32.25 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=17.3
Q ss_pred cceeecccCceecccCCccc
Q psy3842 73 KLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal 92 (139)
+...|..||.|..+||.+.-
T Consensus 210 gv~~C~~Cg~Cs~VCPk~I~ 229 (250)
T PRK07570 210 GFGNCTNTGECEAVCPKGIS 229 (250)
T ss_pred CcccCcccCccccccCCCCC
Confidence 45679999999999999874
No 181
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=65.21 E-value=2.6 Score=36.61 Aligned_cols=18 Identities=6% Similarity=0.038 Sum_probs=9.6
Q ss_pred eecccCc--eecccCCcccc
Q psy3842 76 LSELSGK--RESTCAPAREG 93 (139)
Q Consensus 76 ~~~~~g~--~~~~CPtgal~ 93 (139)
.|..|+. |+.+||++|+.
T Consensus 55 ~C~~C~~~~C~~~CP~~ai~ 74 (639)
T PRK12809 55 ACHHCNNAPCVTACPVNALT 74 (639)
T ss_pred CCcCcCChhHHhhCCcCcee
Confidence 4455554 55555555543
No 182
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=64.61 E-value=2.1 Score=33.08 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=12.1
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|+.|+.|+.+||++|+..
T Consensus 200 ~C~~C~~Ci~~CP~~AI~i 218 (263)
T PRK00783 200 NCSLCKLCERACPGKAIRV 218 (263)
T ss_pred hCCCchHHHHhCCCCceEE
Confidence 3566677777777666543
No 183
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=64.57 E-value=2.8 Score=32.24 Aligned_cols=20 Identities=10% Similarity=0.285 Sum_probs=17.2
Q ss_pred cceeecccCceecccCCccc
Q psy3842 73 KLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal 92 (139)
+...|+.||+|..+||.+.-
T Consensus 201 gl~~C~~C~~C~~vCP~~I~ 220 (244)
T PRK12385 201 GVWSCTFVGYCSEVCPKHVD 220 (244)
T ss_pred hhhhCcCcccccccCCCCCC
Confidence 55689999999999999864
No 184
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=64.01 E-value=2.7 Score=35.14 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=16.7
Q ss_pred ceeecccCceecccCCcccc
Q psy3842 74 LFLSELSGKRESTCAPAREG 93 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~ 93 (139)
.+-|..||+|..+||+-+..
T Consensus 307 ~L~CIRCGaC~n~CPvY~~i 326 (459)
T COG1139 307 ALRCIRCGACLNHCPVYRHI 326 (459)
T ss_pred HHHhhcchHhhhcChhhhhc
Confidence 34688999999999997763
No 185
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=63.88 E-value=2.9 Score=32.23 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=16.5
Q ss_pred cceeecccCceecccCCccc
Q psy3842 73 KLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal 92 (139)
....|..||.|.++||+...
T Consensus 150 ~~~~CI~CG~C~saCP~~~~ 169 (249)
T PRK08640 150 ELSKCMTCGCCLEACPNVNE 169 (249)
T ss_pred hhhhccCcCcccccCCCCcc
Confidence 34579999999999998753
No 186
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=62.83 E-value=3.4 Score=31.68 Aligned_cols=21 Identities=14% Similarity=0.082 Sum_probs=17.8
Q ss_pred ccceeecccCceecccCCccc
Q psy3842 72 EKLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 72 ~~~~~~~~~g~~~~~CPtgal 92 (139)
.+...|+.||+|..+||.+..
T Consensus 203 ~gi~~C~~C~~C~~vCPk~I~ 223 (239)
T PRK13552 203 DGVFGCMSLLGCEDNCPKDLP 223 (239)
T ss_pred CCcCCCcCcCccchhCCCCCc
Confidence 356799999999999998754
No 187
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=62.78 E-value=3.3 Score=31.70 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=17.4
Q ss_pred cceeecccCceecccCCccc
Q psy3842 73 KLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal 92 (139)
+...|+.||+|..+||.|..
T Consensus 199 gl~~C~~C~~C~~vCPkgI~ 218 (235)
T PRK12575 199 RLFRCRTIMNCVDVCPKGLN 218 (235)
T ss_pred CcccccCcchhccccCCCCc
Confidence 46789999999999999864
No 188
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=62.53 E-value=2.8 Score=35.03 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=17.2
Q ss_pred cceeecccCceecccCCccc
Q psy3842 73 KLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal 92 (139)
....|+.||.|.++||++.-
T Consensus 341 ~~~~C~~Cg~C~~vCP~gI~ 360 (432)
T TIGR00273 341 LPYLSSLCGACREVCPVKIP 360 (432)
T ss_pred cCccchhhhhhhccCCCCCc
Confidence 34689999999999999864
No 189
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=60.70 E-value=3.9 Score=31.64 Aligned_cols=18 Identities=11% Similarity=0.065 Sum_probs=15.3
Q ss_pred ceeecccCceecccCCcc
Q psy3842 74 LFLSELSGKRESTCAPAR 91 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtga 91 (139)
...|..||.|.++||+..
T Consensus 156 ~~~CI~CG~C~saCP~~~ 173 (250)
T PRK07570 156 AAACIGCGACVAACPNGS 173 (250)
T ss_pred ccccCCCcccccccCCcc
Confidence 346899999999999963
No 190
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=60.33 E-value=4 Score=31.46 Aligned_cols=20 Identities=5% Similarity=-0.046 Sum_probs=17.3
Q ss_pred cceeecccCceecccCCccc
Q psy3842 73 KLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal 92 (139)
+...|+.||+|..+||.|..
T Consensus 207 g~~~C~~Cg~C~~vCPkgI~ 226 (249)
T PRK08640 207 GIADCGNAQNCVRVCPKGIP 226 (249)
T ss_pred CeeCCcCcCcccccCCCCCC
Confidence 45789999999999999864
No 191
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=59.86 E-value=2.8 Score=32.27 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=16.7
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|+.|+.|+.+||.+|+..
T Consensus 200 ~C~~C~~C~~~Cp~~AI~~ 218 (259)
T cd07030 200 DCSLCKLCERACDAGAIRV 218 (259)
T ss_pred hCcCchHHHHhCCCCcEEE
Confidence 6889999999999998754
No 192
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=59.83 E-value=3.9 Score=30.71 Aligned_cols=18 Identities=28% Similarity=0.170 Sum_probs=15.6
Q ss_pred ceeecccCceecccCCcc
Q psy3842 74 LFLSELSGKRESTCAPAR 91 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtga 91 (139)
...|..||.|.++||+..
T Consensus 137 ~~~Ci~CG~C~~~CP~~~ 154 (220)
T TIGR00384 137 LSGCILCGCCYSSCPAFW 154 (220)
T ss_pred hhhccccccccccCCCCc
Confidence 457899999999999974
No 193
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=59.78 E-value=2.6 Score=33.24 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=16.7
Q ss_pred ceeeccc---------CceecccCCccccc
Q psy3842 74 LFLSELS---------GKRESTCAPAREGV 94 (139)
Q Consensus 74 ~~~~~~~---------g~~~~~CPtgal~~ 94 (139)
+..|+.| ++|+.+||++|+..
T Consensus 150 ~~KC~~C~dr~~~G~~PaCv~aCP~gAi~f 179 (283)
T TIGR01582 150 PYKCTLCIDRVSVGQEPACVKTCPTNAISF 179 (283)
T ss_pred hhhhcccccccccCCCChHhCcccHhhEEE
Confidence 4567777 48999999999853
No 194
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=59.34 E-value=3.8 Score=34.20 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=16.1
Q ss_pred ceeecccCceecccCCccc
Q psy3842 74 LFLSELSGKRESTCAPARE 92 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal 92 (139)
+..|..||.|..+||+-+.
T Consensus 292 ~~~CIrCG~C~~~CPvy~~ 310 (432)
T TIGR00273 292 VLACIRCGACQNECPVYRH 310 (432)
T ss_pred HhhCCCCCCccccCcchhc
Confidence 4579999999999998754
No 195
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=59.06 E-value=4.1 Score=31.94 Aligned_cols=20 Identities=10% Similarity=0.107 Sum_probs=17.2
Q ss_pred cceeecccCceecccCCccc
Q psy3842 73 KLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal 92 (139)
+...|+.||+|..+||.+..
T Consensus 204 ~i~~C~~Cg~C~~~CP~~I~ 223 (279)
T PRK12576 204 SSWRCTYCYSCSNVCPRDIE 223 (279)
T ss_pred cCCcccCcccchhhCCCCCc
Confidence 45689999999999998763
No 196
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=58.85 E-value=4.3 Score=31.82 Aligned_cols=19 Identities=16% Similarity=0.088 Sum_probs=15.9
Q ss_pred ceeecccCceecccCCccc
Q psy3842 74 LFLSELSGKRESTCAPARE 92 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal 92 (139)
...|..||.|.++||+.+.
T Consensus 151 ~~~CI~CG~C~~~CP~~~~ 169 (279)
T PRK12576 151 FAQCIWCGLCVSACPVVAI 169 (279)
T ss_pred chhCcccCcccccCCCccc
Confidence 3478999999999998753
No 197
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=58.16 E-value=3.8 Score=35.00 Aligned_cols=19 Identities=5% Similarity=-0.185 Sum_probs=15.3
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|..|+.|+.+||++++..
T Consensus 511 ~c~~C~~C~~~Cp~~ai~~ 529 (564)
T PRK12771 511 NCFECDNCYGACPQDAIIK 529 (564)
T ss_pred cccccchhhhhCChhheee
Confidence 3456799999999999754
No 198
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=57.42 E-value=5.7 Score=34.06 Aligned_cols=19 Identities=16% Similarity=0.039 Sum_probs=17.3
Q ss_pred eecccCceecccCCcccccc
Q psy3842 76 LSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~ 95 (139)
.|+.||.|+. ||-+|++.-
T Consensus 562 ~C~gC~~C~~-Cpf~ais~~ 580 (622)
T COG1148 562 KCTGCGICAE-CPFGAISVD 580 (622)
T ss_pred hhcCCcceee-CCCCceecc
Confidence 5889999999 999999876
No 199
>PRK13795 hypothetical protein; Provisional
Probab=57.34 E-value=3.2 Score=36.24 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=17.0
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|..||.|+++||++++..
T Consensus 613 ~C~~Cg~C~~aCP~~a~~~ 631 (636)
T PRK13795 613 KCIHCGKCTEVCPVVKYKD 631 (636)
T ss_pred hcCChhHHHhhcCCCeeEe
Confidence 6889999999999998765
No 200
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=56.96 E-value=5.1 Score=30.69 Aligned_cols=20 Identities=15% Similarity=0.146 Sum_probs=16.2
Q ss_pred cceeecccCceecccCCccc
Q psy3842 73 KLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal 92 (139)
....|..||.|.++||+.+.
T Consensus 142 ~~~~CI~CG~C~s~CP~~~~ 161 (235)
T PRK12575 142 GLYECILCACCSTACPSYWW 161 (235)
T ss_pred hhhhCcccccccccccCccc
Confidence 34579999999999998643
No 201
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=56.37 E-value=5.2 Score=32.94 Aligned_cols=16 Identities=13% Similarity=0.115 Sum_probs=14.0
Q ss_pred eecccCceecccCCcc
Q psy3842 76 LSELSGKRESTCAPAR 91 (139)
Q Consensus 76 ~~~~~g~~~~~CPtga 91 (139)
.|+.||.|+.+||.++
T Consensus 343 ~C~~C~~C~~~Cp~~~ 358 (420)
T PRK08318 343 KCIGCGRCYIACEDTS 358 (420)
T ss_pred HCCCCCcccccCCCcc
Confidence 5889999999999863
No 202
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=55.85 E-value=5.7 Score=30.76 Aligned_cols=21 Identities=10% Similarity=0.108 Sum_probs=17.9
Q ss_pred ccceeecccCceecccCCccc
Q psy3842 72 EKLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 72 ~~~~~~~~~g~~~~~CPtgal 92 (139)
.+...|..|++|.++||-|..
T Consensus 197 ~gl~~C~~C~~C~~vCPkgI~ 217 (251)
T PRK12386 197 HGLGYCNITKCCTEVCPEHIK 217 (251)
T ss_pred cCcccCcCCCCcCCcCCCCcC
Confidence 356789999999999999864
No 203
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=55.29 E-value=5.1 Score=32.52 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=14.3
Q ss_pred ceeecccCceecccCC
Q psy3842 74 LFLSELSGKRESTCAP 89 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPt 89 (139)
+.-|..||+|..+|||
T Consensus 225 ~~rCi~Cg~C~~~CPt 240 (344)
T PRK15055 225 DSRCIACGRCNFVCPT 240 (344)
T ss_pred HhhCccCccccccCCc
Confidence 3478999999999999
No 204
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=55.17 E-value=4.5 Score=37.40 Aligned_cols=20 Identities=10% Similarity=0.102 Sum_probs=17.3
Q ss_pred eeecccCceecccCCccccc
Q psy3842 75 FLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~ 94 (139)
..|..||+|+.+||+.+.-.
T Consensus 926 ~~C~~CG~C~~~CP~~~~py 945 (1019)
T PRK09853 926 AMCNECGNCAQFCPWNGKPY 945 (1019)
T ss_pred ccCccccchhhhCCCCCCcc
Confidence 57999999999999998643
No 205
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=53.54 E-value=6.7 Score=36.27 Aligned_cols=15 Identities=13% Similarity=0.153 Sum_probs=13.3
Q ss_pred ccCceecccCCcccc
Q psy3842 79 LSGKRESTCAPAREG 93 (139)
Q Consensus 79 ~~g~~~~~CPtgal~ 93 (139)
.||.|+.+||.+|+.
T Consensus 889 ~Cg~Cv~vCP~~Aii 903 (1012)
T TIGR03315 889 VCEKCVDVCPNRANI 903 (1012)
T ss_pred CCCChhhhCChhhhh
Confidence 499999999999863
No 206
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=53.15 E-value=6.6 Score=32.52 Aligned_cols=15 Identities=7% Similarity=0.034 Sum_probs=11.6
Q ss_pred CceecccCCcccccc
Q psy3842 81 GKRESTCAPAREGVM 95 (139)
Q Consensus 81 g~~~~~CPtgal~~~ 95 (139)
.+|+++|||+|+...
T Consensus 248 ~~~v~~Cp~~ai~~~ 262 (402)
T TIGR02064 248 NEVVNRCPTKAISWD 262 (402)
T ss_pred hhHhhcCCccccccC
Confidence 358899999998654
No 207
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=52.86 E-value=4.9 Score=34.45 Aligned_cols=22 Identities=9% Similarity=0.143 Sum_probs=18.5
Q ss_pred ceeecccCceecccCCcccccc
Q psy3842 74 LFLSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~~ 95 (139)
+..|..||-|..+||.||+...
T Consensus 586 ~~~C~gCG~C~~aCp~gai~~~ 607 (622)
T COG1148 586 PLRCKGCGICSAACPSGAIDLA 607 (622)
T ss_pred hhhhCcccchhhhCCcccchhc
Confidence 4478899999999999997644
No 208
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=52.23 E-value=6.1 Score=31.94 Aligned_cols=17 Identities=12% Similarity=0.256 Sum_probs=14.8
Q ss_pred eeecccCceecccCCcc
Q psy3842 75 FLSELSGKRESTCAPAR 91 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtga 91 (139)
.-|..||+|..+|||=.
T Consensus 220 ~rCi~C~~C~~~CPtC~ 236 (334)
T TIGR02910 220 SRCIACGRCNTVCPTCT 236 (334)
T ss_pred hhCCcCccccccCCceE
Confidence 46899999999999955
No 209
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=52.15 E-value=5.2 Score=34.12 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=17.5
Q ss_pred eecccCceecccCCcccccc
Q psy3842 76 LSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~ 95 (139)
.|..||-|+.-||-+|+...
T Consensus 51 lCiGCGICvkkCPF~AI~Iv 70 (591)
T COG1245 51 LCIGCGICVKKCPFDAISIV 70 (591)
T ss_pred hhccchhhhccCCcceEEEe
Confidence 57899999999999998654
No 210
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=51.84 E-value=3.8 Score=25.49 Aligned_cols=18 Identities=22% Similarity=0.051 Sum_probs=13.7
Q ss_pred cccCceecccCCcccccc
Q psy3842 78 ELSGKRESTCAPAREGVM 95 (139)
Q Consensus 78 ~~~g~~~~~CPtgal~~~ 95 (139)
+.--++++.||.|||..+
T Consensus 55 e~i~~vi~sCPSGAl~Y~ 72 (74)
T COG3592 55 EEIVKVIDTCPSGALKYR 72 (74)
T ss_pred HHHHHHHHhCCchhhhee
Confidence 344578999999998754
No 211
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=50.75 E-value=6.7 Score=30.86 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=17.3
Q ss_pred cceeecccCceecccCCccc
Q psy3842 73 KLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal 92 (139)
+...|+.|++|..+||.|..
T Consensus 242 gl~~C~~C~~C~~vCPkgI~ 261 (276)
T PLN00129 242 KLYRCHTIRNCSNACPKGLN 261 (276)
T ss_pred CCCcCcChhhccccCCCCCC
Confidence 55789999999999999863
No 212
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=50.71 E-value=6.7 Score=30.36 Aligned_cols=20 Identities=10% Similarity=0.037 Sum_probs=16.3
Q ss_pred cceeecccCceecccCCccc
Q psy3842 73 KLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal 92 (139)
....|..||.|.++||+...
T Consensus 140 ~~~~CI~CG~C~s~CPv~~~ 159 (251)
T PRK12386 140 EFRKCIECFLCQNVCHVVRD 159 (251)
T ss_pred chhhcccCCcccCcCCcccc
Confidence 34478999999999998753
No 213
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=50.09 E-value=6.4 Score=31.56 Aligned_cols=20 Identities=10% Similarity=0.002 Sum_probs=17.3
Q ss_pred cceeecccCceecccCCccc
Q psy3842 73 KLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal 92 (139)
+...|+.|+.|..+||.+.-
T Consensus 207 giw~C~~C~~C~~~CPk~I~ 226 (329)
T PRK12577 207 GVWGCTRCYYCNSVCPMEVA 226 (329)
T ss_pred ccccCcChhhhhhhCCCCCc
Confidence 45689999999999999863
No 214
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=49.81 E-value=4.3 Score=33.92 Aligned_cols=17 Identities=12% Similarity=0.020 Sum_probs=14.6
Q ss_pred eeecccCceecccCCccc
Q psy3842 75 FLSELSGKRESTCAPARE 92 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal 92 (139)
..|..||.|+++||. ++
T Consensus 255 ~~Ci~Cg~CidaCp~-a~ 271 (434)
T TIGR02745 255 LECINCGLCIDACDD-VM 271 (434)
T ss_pred hhChhhhHHHHhCCC-hH
Confidence 368999999999998 54
No 215
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=49.77 E-value=8 Score=29.72 Aligned_cols=20 Identities=10% Similarity=0.252 Sum_probs=17.0
Q ss_pred cceeecccCceecccCCccc
Q psy3842 73 KLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal 92 (139)
+...|+.+++|.++||.+--
T Consensus 196 gv~~C~~~~~C~~vCPK~i~ 215 (234)
T COG0479 196 GVWRCTTCGNCTEVCPKGIP 215 (234)
T ss_pred CEecccccccccccCCCCCC
Confidence 45689999999999999853
No 216
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=49.35 E-value=7.3 Score=31.22 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=15.4
Q ss_pred ceeecccCceecccCCcc
Q psy3842 74 LFLSELSGKRESTCAPAR 91 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtga 91 (139)
...|..||.|.++||+..
T Consensus 151 ~~~Ci~CG~C~s~CP~~~ 168 (329)
T PRK12577 151 TGNCILCGACYSECNARE 168 (329)
T ss_pred hhhCcccCcccccCCCCC
Confidence 456999999999999874
No 217
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=49.21 E-value=6.2 Score=30.24 Aligned_cols=18 Identities=11% Similarity=0.014 Sum_probs=15.1
Q ss_pred eeecccCceecccCCccc
Q psy3842 75 FLSELSGKRESTCAPARE 92 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal 92 (139)
..|..||.|.++||+...
T Consensus 149 ~~CI~Cg~C~saCP~~~~ 166 (239)
T PRK13552 149 DRCIECGCCVAACGTKQM 166 (239)
T ss_pred hhccccchhHhhCCCCcc
Confidence 468999999999997653
No 218
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=49.12 E-value=8.3 Score=30.34 Aligned_cols=17 Identities=12% Similarity=0.216 Sum_probs=14.7
Q ss_pred eeecccCceecccCCcc
Q psy3842 75 FLSELSGKRESTCAPAR 91 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtga 91 (139)
..|..||.|.++||+-.
T Consensus 187 ~~CI~CG~C~saCPv~~ 203 (276)
T PLN00129 187 YECILCACCSTSCPSYW 203 (276)
T ss_pred hhCccccccccccCCCc
Confidence 47999999999999753
No 219
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=48.94 E-value=7.5 Score=29.86 Aligned_cols=17 Identities=12% Similarity=-0.058 Sum_probs=14.8
Q ss_pred eeecccCceecccCCcc
Q psy3842 75 FLSELSGKRESTCAPAR 91 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtga 91 (139)
..|..||.|.++||+..
T Consensus 147 ~~CI~Cg~C~saCP~~~ 163 (244)
T PRK12385 147 SGCINCGLCYAACPQFG 163 (244)
T ss_pred HhcCcCccccCcCcCcc
Confidence 47999999999999953
No 220
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=48.80 E-value=5.3 Score=35.62 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=16.6
Q ss_pred ceeecccCceecccCCccc
Q psy3842 74 LFLSELSGKRESTCAPARE 92 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal 92 (139)
...|+.||+|.++||+++-
T Consensus 402 ~~~Ct~CG~C~evCP~gIp 420 (731)
T cd01916 402 FDQCVGCGRCEQECPKEIP 420 (731)
T ss_pred HhhhhhhhHHhhhCCCCCC
Confidence 4579999999999999983
No 221
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=48.75 E-value=7.7 Score=32.52 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=17.2
Q ss_pred ccceeecccCceecccCCcc
Q psy3842 72 EKLFLSELSGKRESTCAPAR 91 (139)
Q Consensus 72 ~~~~~~~~~g~~~~~CPtga 91 (139)
+.+..|+.||.|..+||+..
T Consensus 355 ~~~~~c~lcg~C~evCPv~I 374 (459)
T COG1139 355 DLPYACSLCGACTEVCPVKI 374 (459)
T ss_pred ccchhhccccCCCCcCCCCC
Confidence 34568999999999999986
No 222
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=48.65 E-value=7.6 Score=29.42 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=14.9
Q ss_pred ceeecccCceecccCCc
Q psy3842 74 LFLSELSGKRESTCAPA 90 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtg 90 (139)
...|..||.|.++||+.
T Consensus 140 ~~~Ci~Cg~C~~~CP~~ 156 (232)
T PRK05950 140 LYECILCACCSTSCPSF 156 (232)
T ss_pred HHhccccccccccCCcc
Confidence 44789999999999986
No 223
>PRK13409 putative ATPase RIL; Provisional
Probab=48.22 E-value=7.8 Score=33.54 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=16.9
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|..||-|+.-||-.|+..
T Consensus 50 ~c~~c~~c~~~cp~~a~~i 68 (590)
T PRK13409 50 LCIGCGICVKKCPFDAISI 68 (590)
T ss_pred hccccccccccCCcceEEE
Confidence 5789999999999999864
No 224
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=48.10 E-value=8.4 Score=31.28 Aligned_cols=19 Identities=11% Similarity=-0.024 Sum_probs=16.1
Q ss_pred ceeecccCceecccCCccc
Q psy3842 74 LFLSELSGKRESTCAPARE 92 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal 92 (139)
...|..||.|.++||+-..
T Consensus 4 ~~~Ci~Cg~C~~~Cp~~~~ 22 (397)
T TIGR03379 4 FESCIKCTVCTVYCPVAKA 22 (397)
T ss_pred hhhCCCCCCCcccCcCccc
Confidence 3468999999999999754
No 225
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=48.09 E-value=22 Score=27.54 Aligned_cols=25 Identities=12% Similarity=0.057 Sum_probs=20.2
Q ss_pred cccceeecccCceecccCCcccccc
Q psy3842 71 REKLFLSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 71 ~~~~~~~~~~g~~~~~CPtgal~~~ 95 (139)
++.-..|..||-|...||+-|+.-.
T Consensus 186 l~qg~~C~G~~TC~A~CP~~ai~c~ 210 (247)
T COG1941 186 LEQGLPCMGCGTCAASCPSRAIPCR 210 (247)
T ss_pred ecCCCcccCchhhhccCCccCCccc
Confidence 4455678999999999999998654
No 226
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=47.96 E-value=7.7 Score=31.59 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=17.7
Q ss_pred ccceeecccCceecccCCccc
Q psy3842 72 EKLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 72 ~~~~~~~~~g~~~~~CPtgal 92 (139)
+....|+.||.|..+||.+..
T Consensus 70 ~~~~~C~~C~~C~~~CP~~v~ 90 (407)
T PRK11274 70 LHLDRCLTCRNCETTCPSGVQ 90 (407)
T ss_pred cccccCccccchhhhCCCCCC
Confidence 346689999999999999853
No 227
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=46.73 E-value=9.2 Score=32.03 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=18.5
Q ss_pred ccceeecccCceecccCCcccc
Q psy3842 72 EKLFLSELSGKRESTCAPAREG 93 (139)
Q Consensus 72 ~~~~~~~~~g~~~~~CPtgal~ 93 (139)
++...|+.||.|..+||.|...
T Consensus 182 ~~~~~C~~C~~C~~~CP~gi~~ 203 (486)
T PRK06259 182 EGLYNCTTCGKCVEVCPKEIDI 203 (486)
T ss_pred CCCcCCCCcCcccCcCCCCCCc
Confidence 4567899999999999998654
No 228
>PRK13984 putative oxidoreductase; Provisional
Probab=46.54 E-value=6.7 Score=33.70 Aligned_cols=20 Identities=5% Similarity=-0.008 Sum_probs=16.6
Q ss_pred eeecccCceecccCCccccc
Q psy3842 75 FLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~ 94 (139)
..|..|+.|+++||++|+..
T Consensus 86 ~~c~~c~~c~~~Cp~~Ai~~ 105 (604)
T PRK13984 86 GRCSFCALCVDICTTGSLKM 105 (604)
T ss_pred ccCcCcchHHhhCCcCcEEe
Confidence 35788999999999998643
No 229
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=44.71 E-value=11 Score=30.26 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=17.3
Q ss_pred ceeecccCceecccCCcccc
Q psy3842 74 LFLSELSGKRESTCAPAREG 93 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~ 93 (139)
...|+.||.|.++||+-..+
T Consensus 8 ~~~Cv~Cg~C~~~CP~~~~~ 27 (388)
T COG0247 8 LDKCVHCGFCTNVCPSYRAT 27 (388)
T ss_pred HHhcCCCCcccCcCCCcccc
Confidence 44799999999999998875
No 230
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=44.36 E-value=11 Score=30.73 Aligned_cols=20 Identities=20% Similarity=0.102 Sum_probs=16.5
Q ss_pred cceeecccCceecccCCccc
Q psy3842 73 KLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal 92 (139)
.+..|..||.|..+||+-..
T Consensus 21 ~~~~C~~Cg~C~~~CP~~~~ 40 (407)
T PRK11274 21 ILRKCVHCGFCTATCPTYQL 40 (407)
T ss_pred HHHhCccCCCccccCCcccc
Confidence 34479999999999998654
No 231
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=43.93 E-value=11 Score=30.50 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=17.9
Q ss_pred ccceeecccCceecccCCcc
Q psy3842 72 EKLFLSELSGKRESTCAPAR 91 (139)
Q Consensus 72 ~~~~~~~~~g~~~~~CPtga 91 (139)
..+..|..||.|..+||.+.
T Consensus 51 ~~~~~C~~C~~C~~~CP~~i 70 (396)
T PRK11168 51 ESLKYCSNCKRCEVACPSGV 70 (396)
T ss_pred CCCCcCcCcCccCcccCCCC
Confidence 46678999999999999986
No 232
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=43.56 E-value=11 Score=14.11 Aligned_cols=6 Identities=17% Similarity=0.556 Sum_probs=3.2
Q ss_pred cccCCc
Q psy3842 85 STCAPA 90 (139)
Q Consensus 85 ~~CPtg 90 (139)
..||.|
T Consensus 4 ~nCP~G 9 (9)
T PF00220_consen 4 RNCPIG 9 (9)
T ss_pred ccCCCC
Confidence 446654
No 233
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=43.50 E-value=9.9 Score=30.51 Aligned_cols=18 Identities=11% Similarity=0.003 Sum_probs=15.3
Q ss_pred eeecccCceecccCCccc
Q psy3842 75 FLSELSGKRESTCAPARE 92 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal 92 (139)
..|..||.|..+||+.+.
T Consensus 53 ~~C~~Cg~C~~vCP~~~~ 70 (341)
T PRK09326 53 NVCEGCLTCSRICPVVDG 70 (341)
T ss_pred CcCcCcCchhhhCCCCcc
Confidence 468999999999998654
No 234
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=43.19 E-value=7.7 Score=34.82 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=15.5
Q ss_pred eeecccCceecccCCcc
Q psy3842 75 FLSELSGKRESTCAPAR 91 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtga 91 (139)
..|+.||.|.++||++.
T Consensus 442 ~~Ct~CG~CeeVCPtgI 458 (781)
T PRK00941 442 DKCIGCGRCEQVCPKNI 458 (781)
T ss_pred hhccchhHHhhhCCCCC
Confidence 47999999999999986
No 235
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=42.51 E-value=12 Score=28.00 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=17.7
Q ss_pred ceeecccCceecccCCccccc
Q psy3842 74 LFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~ 94 (139)
...|-.||.|-..||.++.+.
T Consensus 38 l~~C~QCG~CT~sCPs~r~t~ 58 (195)
T COG1150 38 LEGCYQCGTCTGSCPSGRFTD 58 (195)
T ss_pred HhHhhccCcccCCCCCcccCC
Confidence 345999999999999999753
No 236
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=42.08 E-value=11 Score=31.47 Aligned_cols=19 Identities=26% Similarity=0.086 Sum_probs=16.3
Q ss_pred cceeecccCceecccCCcc
Q psy3842 73 KLFLSELSGKRESTCAPAR 91 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtga 91 (139)
....|..||.|.++||+.+
T Consensus 131 ~~~~Ci~CG~C~~~CP~~~ 149 (486)
T PRK06259 131 KLRGCIECLSCVSTCPARK 149 (486)
T ss_pred CchhcccCccccccCCCCc
Confidence 4457999999999999875
No 237
>KOG0421|consensus
Probab=41.76 E-value=36 Score=24.33 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=26.4
Q ss_pred CCCCEEEcCCHHHHHHHHHHHHHHHHhCCC
Q psy3842 1 MKGWRVKTNSEMTRRAREGVMEFLLVNHPL 30 (139)
Q Consensus 1 ~~Gm~V~T~s~~v~~~r~~~lelll~~h~~ 30 (139)
.++|.|.-.-.-.++.|+.+|.||+++.+.
T Consensus 19 a~~m~v~~~~~V~KRLq~ELm~Lmms~~~g 48 (175)
T KOG0421|consen 19 AAPMAVVDGHSVTKRLQSELMGLMMSNTPG 48 (175)
T ss_pred CCCcccccCchHHHHHHHHHHHHHhcCCCC
Confidence 368888888889999999999999999875
No 238
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=41.29 E-value=13 Score=30.27 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=18.1
Q ss_pred ccceeecccCceecccCCccc
Q psy3842 72 EKLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 72 ~~~~~~~~~g~~~~~CPtgal 92 (139)
+.+..|..|+.|..+||.+.-
T Consensus 49 ~~~~~C~~C~~C~~~CP~~i~ 69 (397)
T TIGR03379 49 EALKYCTNCKRCEVACPSDVK 69 (397)
T ss_pred cccccCcCcCccchhcCCCCC
Confidence 456789999999999999864
No 239
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=41.20 E-value=10 Score=31.83 Aligned_cols=17 Identities=12% Similarity=-0.181 Sum_probs=15.0
Q ss_pred eecccCceecccCCccc
Q psy3842 76 LSELSGKRESTCAPARE 92 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal 92 (139)
.|..||+|+++||.+-+
T Consensus 374 aCI~CG~C~~vCPm~L~ 390 (447)
T TIGR01936 374 AMIPIGIYERVMPLDIP 390 (447)
T ss_pred ceeECChHhhcCCCCCC
Confidence 57899999999999864
No 240
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=39.93 E-value=12 Score=30.93 Aligned_cols=16 Identities=0% Similarity=-0.373 Sum_probs=13.9
Q ss_pred eecccCceecccCCccc
Q psy3842 76 LSELSGKRESTCAPARE 92 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal 92 (139)
.|+.|+.|+.+||. |+
T Consensus 273 ~C~~Cm~Ci~~~p~-a~ 288 (402)
T TIGR02064 273 ECVRCMHCINKMPK-AL 288 (402)
T ss_pred hcCcCccccccCcc-cc
Confidence 58899999999998 44
No 241
>PF13223 DUF4031: Protein of unknown function (DUF4031)
Probab=38.88 E-value=18 Score=23.32 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=16.5
Q ss_pred cchhHHHHHHhCCCCCCCCC
Q psy3842 114 ECDLQDQSMAFGSDRSRFTD 133 (139)
Q Consensus 114 ~~eL~~~~~~~gv~~~rf~~ 133 (139)
--||+.+|.++|+.+.-|..
T Consensus 23 ~~ELHafA~riGv~rr~fq~ 42 (83)
T PF13223_consen 23 LDELHAFAARIGVPRRWFQR 42 (83)
T ss_pred HHHHHHHHHHcCCCHHHHcC
Confidence 44999999999998765766
No 242
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=36.79 E-value=11 Score=30.42 Aligned_cols=19 Identities=16% Similarity=0.046 Sum_probs=16.0
Q ss_pred eeecccCceecccCCccccc
Q psy3842 75 FLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~ 94 (139)
-.|+.||.|+.+||. +++.
T Consensus 5 ~~c~~Cg~C~a~cp~-~i~~ 23 (332)
T COG1035 5 GLCTGCGTCAAVCPY-AITE 23 (332)
T ss_pred cccccchhhHhhCCc-eEEE
Confidence 468999999999999 6654
No 243
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=36.29 E-value=11 Score=33.87 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=14.8
Q ss_pred eecccCceecccCCcc
Q psy3842 76 LSELSGKRESTCAPAR 91 (139)
Q Consensus 76 ~~~~~g~~~~~CPtga 91 (139)
.|+.||.|.++||++.
T Consensus 438 ~C~~CG~C~evCP~gI 453 (784)
T TIGR00314 438 QCYACGRCEQACPKNI 453 (784)
T ss_pred hhhhhhHHhccCCCCC
Confidence 6999999999999984
No 244
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=35.88 E-value=14 Score=30.97 Aligned_cols=18 Identities=11% Similarity=-0.204 Sum_probs=15.2
Q ss_pred eeecccCceecccCCccc
Q psy3842 75 FLSELSGKRESTCAPARE 92 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal 92 (139)
..|..||+|.++||.+-+
T Consensus 374 ~~CI~Cg~C~~vCP~~L~ 391 (448)
T PRK05352 374 RAMVPIGNYERVMPLDIL 391 (448)
T ss_pred cceeecCcHhhcCCCCCC
Confidence 378899999999999643
No 245
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=35.11 E-value=14 Score=29.83 Aligned_cols=19 Identities=11% Similarity=-0.022 Sum_probs=16.5
Q ss_pred eeecccCceecccCCcccc
Q psy3842 75 FLSELSGKRESTCAPAREG 93 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~ 93 (139)
..|..|+.|.++||+||..
T Consensus 221 ~~ci~c~~c~~ac~~gav~ 239 (354)
T COG2768 221 EKCIGCGQCMEACPYGAVD 239 (354)
T ss_pred hhccchhhhhhhccCcccc
Confidence 3678999999999999964
No 246
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=33.97 E-value=18 Score=32.32 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=15.0
Q ss_pred eeecccCceecccCCcc
Q psy3842 75 FLSELSGKRESTCAPAR 91 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtga 91 (139)
..|+.||.|..+||++.
T Consensus 365 ~kCI~CG~Cv~aCP~~l 381 (731)
T cd01916 365 AKCTDCGWCTRACPNSL 381 (731)
T ss_pred hcCCCCCcccccCCCCC
Confidence 36899999999999984
No 247
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=33.93 E-value=10 Score=22.27 Aligned_cols=14 Identities=36% Similarity=0.911 Sum_probs=7.3
Q ss_pred HHHhCCCCCCCcCC
Q psy3842 24 LLVNHPLDCPICDQ 37 (139)
Q Consensus 24 ll~~h~~~C~~C~~ 37 (139)
+.++||..||.|++
T Consensus 19 ~~S~~PatCP~C~a 32 (54)
T PF09237_consen 19 SQSEQPATCPICGA 32 (54)
T ss_dssp CTTS--EE-TTT--
T ss_pred hccCCCCCCCcchh
Confidence 45789999999986
No 248
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=33.38 E-value=19 Score=29.96 Aligned_cols=19 Identities=16% Similarity=0.093 Sum_probs=16.0
Q ss_pred ceeecccCceecccCCccc
Q psy3842 74 LFLSELSGKRESTCAPARE 92 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal 92 (139)
...|..||.|..+||.+.-
T Consensus 401 ~~~C~~Cg~C~~vCP~~i~ 419 (435)
T TIGR01945 401 LMDCIECGCCSYVCPSNIP 419 (435)
T ss_pred CCcCCcCCCcccccCCCCC
Confidence 3578999999999999753
No 249
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=32.65 E-value=15 Score=32.19 Aligned_cols=20 Identities=10% Similarity=-0.034 Sum_probs=17.1
Q ss_pred ceeecccCceecccCCcccc
Q psy3842 74 LFLSELSGKRESTCAPAREG 93 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~ 93 (139)
...|..||.|+++||-.|+.
T Consensus 607 ~~~C~GCg~C~~iCP~~a~~ 626 (640)
T COG4231 607 PSSCNGCGSCVEVCPSFAIK 626 (640)
T ss_pred ccccccchhhhhcCchhhee
Confidence 34699999999999999874
No 250
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=31.87 E-value=16 Score=31.67 Aligned_cols=17 Identities=12% Similarity=-0.107 Sum_probs=14.4
Q ss_pred eeecccCceec--ccCCcc
Q psy3842 75 FLSELSGKRES--TCAPAR 91 (139)
Q Consensus 75 ~~~~~~g~~~~--~CPtga 91 (139)
..|+.||.|+. .||...
T Consensus 550 ~~C~~C~~C~~~~~CP~~~ 568 (595)
T TIGR03336 550 DKCIGCKKCIKELGCPAIE 568 (595)
T ss_pred CcCCCccccccccCCCCcc
Confidence 46899999999 999654
No 251
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=31.64 E-value=20 Score=31.82 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=15.7
Q ss_pred eeecccCceecccCCccc
Q psy3842 75 FLSELSGKRESTCAPARE 92 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal 92 (139)
..|..||.|..+||.+.-
T Consensus 409 ~~CieCG~C~~vCPs~Ip 426 (695)
T PRK05035 409 FDCIECGACAYVCPSNIP 426 (695)
T ss_pred hhccccCcccccCCCCCc
Confidence 479999999999999853
No 252
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=31.64 E-value=14 Score=21.98 Aligned_cols=14 Identities=7% Similarity=-0.223 Sum_probs=12.2
Q ss_pred eecccCceecccCC
Q psy3842 76 LSELSGKRESTCAP 89 (139)
Q Consensus 76 ~~~~~g~~~~~CPt 89 (139)
.|..||.|+..||-
T Consensus 7 ~C~gcg~C~~~aP~ 20 (65)
T PF13459_consen 7 RCIGCGLCVELAPE 20 (65)
T ss_pred cCcCccHHHhhCCc
Confidence 58899999999984
No 253
>PF03091 CutA1: CutA1 divalent ion tolerance protein; InterPro: IPR004323 The CutA family of proteins which exhibit ion tolerance are found in a large variety of species []. In E.Coli, two operons on the cutA locus contain genes that encode three proteins, CutA1, CutA2 and CutA3. CutA1 proteins are found in the cytoplasm while CutA2 (50kDa) and CutA3 (24kDa) are located in the inner membrane. Although the role of E. Coli CutA1 is not clear, studies on E. coli cutA locus describe some mutations that lead to an increase in copper sensitivity, thus suggesting a role in ion tolerance []. To date, the structure of CutA proteins from several species have been solved [, ]. The crystal structures of the E.Coli and rat CutA1 proteins show both these proteins to be trimeric in the crystal as well as in solution[].Trimerisation seems to supported by the formation of beta sheets between the subunit. This trimeric structure suggests the protein may be involved in signal transduction due to architectural similarities with PII signal transducer proteins []. Recent studies propose that mammalian CutA1 in the neuronal cell membrane acts as an anchor for acetylcholinesterase (AChE)1 [].; GO: 0010038 response to metal ion; PDB: 1O5J_A 1KR4_A 1VHF_A 3GSD_H 1OSC_A 3OPK_A 4E98_C 1V9B_F 1UKU_A 2E66_C ....
Probab=30.67 E-value=37 Score=22.49 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=18.9
Q ss_pred CEEEcCCHHHHHHHHHHHHHHHHhCCCCCC
Q psy3842 4 WRVKTNSEMTRRAREGVMEFLLVNHPLDCP 33 (139)
Q Consensus 4 m~V~T~s~~v~~~r~~~lelll~~h~~~C~ 33 (139)
+.+.|.+....+ +.++|.+.||-+.|
T Consensus 54 l~~KT~~~~~~~----l~~~i~~~HpYe~P 79 (102)
T PF03091_consen 54 LLIKTTASRFDE----LEERIRELHPYEVP 79 (102)
T ss_dssp EEEEEEGGGHHH----HHHHHHHHSSSSS-
T ss_pred EEEEecHHHHHH----HHHHHHHhCCCCCC
Confidence 456777776665 66777888999987
No 254
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=30.36 E-value=15 Score=31.50 Aligned_cols=17 Identities=6% Similarity=-0.093 Sum_probs=15.4
Q ss_pred eecccCceecccCCccc
Q psy3842 76 LSELSGKRESTCAPARE 92 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal 92 (139)
.|..|+.|+++||+.-+
T Consensus 366 sCi~C~~C~d~CP~~Ll 382 (529)
T COG4656 366 SCIRCSLCADACPVNLL 382 (529)
T ss_pred ccccHHHHHHhCccccC
Confidence 78899999999999865
No 255
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=29.74 E-value=22 Score=32.09 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=14.9
Q ss_pred eeecccCceecccCCcc
Q psy3842 75 FLSELSGKRESTCAPAR 91 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtga 91 (139)
..|+.||.|+.+||++.
T Consensus 399 ~kCI~CG~Cv~aCP~~l 415 (784)
T TIGR00314 399 NKCTQCGNCVRTCPNSL 415 (784)
T ss_pred ccCCCcccchhhCCCCc
Confidence 46899999999999983
No 256
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=29.50 E-value=63 Score=16.62 Aligned_cols=12 Identities=33% Similarity=0.947 Sum_probs=8.5
Q ss_pred ccccCCCCCCCC
Q psy3842 102 HPLDCPICDQGG 113 (139)
Q Consensus 102 ~~~~C~~C~~g~ 113 (139)
.+..||.|+.+.
T Consensus 16 ~~~~CP~Cg~~~ 27 (33)
T cd00350 16 APWVCPVCGAPK 27 (33)
T ss_pred CCCcCcCCCCcH
Confidence 566799888643
No 257
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=27.45 E-value=1.3e+02 Score=21.83 Aligned_cols=42 Identities=19% Similarity=0.183 Sum_probs=32.7
Q ss_pred CEEEcCCHHHHHHHHHHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCCCccc
Q psy3842 4 WRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 57 (139)
Q Consensus 4 m~V~T~s~~v~~~r~~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~ 57 (139)
|.+.++.+++++.-..+.+++ ++|+..+.+++..+|+.+..+
T Consensus 97 ~i~f~~deel~~~~e~i~~~v------------~~Gn~Sl~~lsr~l~~sp~fi 138 (160)
T PF09824_consen 97 YIAFMSDEELRDYVEKIEKEV------------EAGNTSLSDLSRKLGISPVFI 138 (160)
T ss_pred heeecCHHHHHHHHHHHHHHH------------HcCCCcHHHHHHHhCCCHHHH
Confidence 355677788888888888877 346788999999999987543
No 258
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=26.71 E-value=29 Score=31.33 Aligned_cols=17 Identities=12% Similarity=-0.009 Sum_probs=14.8
Q ss_pred eeecccCceecccCCcc
Q psy3842 75 FLSELSGKRESTCAPAR 91 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtga 91 (139)
..|..||.|+.+||++.
T Consensus 404 drCI~CG~Cv~aCP~~l 420 (781)
T PRK00941 404 KKCTECGWCVRVCPNEL 420 (781)
T ss_pred hhCcCCCCccccCCCCc
Confidence 36889999999999974
No 259
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=26.57 E-value=24 Score=21.80 Aligned_cols=15 Identities=7% Similarity=-0.124 Sum_probs=12.7
Q ss_pred eecccCceecccCCc
Q psy3842 76 LSELSGKRESTCAPA 90 (139)
Q Consensus 76 ~~~~~g~~~~~CPtg 90 (139)
.|..||.|..+||..
T Consensus 9 ~Cigcg~C~~~aPdv 23 (68)
T COG1141 9 TCIGCGACLAVAPDV 23 (68)
T ss_pred hccccchhhhcCCcc
Confidence 588999999999874
No 260
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=25.71 E-value=16 Score=21.46 Aligned_cols=15 Identities=7% Similarity=-0.192 Sum_probs=9.0
Q ss_pred eecccCceecccCCc
Q psy3842 76 LSELSGKRESTCAPA 90 (139)
Q Consensus 76 ~~~~~g~~~~~CPtg 90 (139)
.|..||.|+.++|.-
T Consensus 5 ~Ci~Cg~C~~~aP~v 19 (58)
T PF13370_consen 5 KCIGCGLCVEIAPDV 19 (58)
T ss_dssp T--S-SHHHHH-TTT
T ss_pred hCcCCChHHHhCcHh
Confidence 478899999988864
No 261
>KOG0917|consensus
Probab=25.57 E-value=51 Score=26.20 Aligned_cols=23 Identities=22% Similarity=0.474 Sum_probs=20.2
Q ss_pred CCCEEEcCCHHHHHHHHHHHHHH
Q psy3842 2 KGWRVKTNSEMTRRAREGVMEFL 24 (139)
Q Consensus 2 ~Gm~V~T~s~~v~~~r~~~lell 24 (139)
-||+|-+.|++.++.=-.+|.+|
T Consensus 39 ~gmKid~qT~e~rk~lsgLm~~l 61 (338)
T KOG0917|consen 39 TGMKIDSQTPECRKFLSGLMDQL 61 (338)
T ss_pred hcccCCccCHHHHHHHHHHHHHH
Confidence 59999999999999888888776
No 262
>KOG0723|consensus
Probab=25.22 E-value=1e+02 Score=20.97 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCCCCcCCCCcchhHHH
Q psy3842 9 NSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQ 46 (139)
Q Consensus 9 ~s~~v~~~r~~~lelll~~h~~~C~~C~~~g~C~Lq~l 46 (139)
.|-.-.+.|..-...+++|||. +.|.-+|+.-
T Consensus 66 ~s~~k~KikeaHrriM~~NHPD------~GGSPYlAsK 97 (112)
T KOG0723|consen 66 PSLDKDKIKEAHRRIMLANHPD------RGGSPYLASK 97 (112)
T ss_pred ccccHHHHHHHHHHHHHcCCCc------CCCCHHHHHH
Confidence 4445566777778889999995 6788888753
No 263
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=25.02 E-value=1.2e+02 Score=16.91 Aligned_cols=28 Identities=14% Similarity=0.332 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCCC
Q psy3842 17 REGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDR 54 (139)
Q Consensus 17 r~~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~ 54 (139)
++.++++|+.+++. -..++++..+|+++
T Consensus 2 ~~~il~~L~~~~~~----------it~~eLa~~l~vS~ 29 (55)
T PF08279_consen 2 QKQILKLLLESKEP----------ITAKELAEELGVSR 29 (55)
T ss_dssp HHHHHHHHHHTTTS----------BEHHHHHHHCTS-H
T ss_pred HHHHHHHHHHcCCC----------cCHHHHHHHhCCCH
Confidence 45688888777652 46789999999865
No 264
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=24.89 E-value=1.3e+02 Score=19.60 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCCCc
Q psy3842 15 RAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRS 55 (139)
Q Consensus 15 ~~r~~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~ 55 (139)
+.|+.+|.+|.+.+|. .=.+++++...|++.+
T Consensus 9 ~~R~~vl~~L~~~yp~---------~~~~~eIar~v~~~~s 40 (90)
T PF07381_consen 9 KVRKKVLEYLCSIYPE---------PAYPSEIARSVGSDYS 40 (90)
T ss_pred HHHHHHHHHHHHcCCC---------cCCHHHHHHHHCCCHH
Confidence 6799999999999885 3478888888887654
No 265
>PRK10645 divalent-cation tolerance protein CutA; Provisional
Probab=24.06 E-value=1e+02 Score=20.87 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=19.1
Q ss_pred CEEEcCCHHHHHHHHHHHHHHHHhCCCCCC
Q psy3842 4 WRVKTNSEMTRRAREGVMEFLLVNHPLDCP 33 (139)
Q Consensus 4 m~V~T~s~~v~~~r~~~lelll~~h~~~C~ 33 (139)
+.++|..++..+ +.+.|...||-+.|
T Consensus 64 l~iKT~~~~~~~----l~~~I~~~HpYevP 89 (112)
T PRK10645 64 MLLKTTVSHQQA----LLECLKSHHPYQTP 89 (112)
T ss_pred EEEEeCHHHHHH----HHHHHHHhCCCCCC
Confidence 456777666655 66777888999887
No 266
>PF15174 PRNT: Prion-related protein testis-specific
Probab=23.68 E-value=1.1e+02 Score=17.39 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcCC
Q psy3842 13 TRRAREGVMEFLLVNHPLDCPICDQ 37 (139)
Q Consensus 13 v~~~r~~~lelll~~h~~~C~~C~~ 37 (139)
..++--.+..|..-.-|.||..|++
T Consensus 20 TlKAvavthSLW~LqiPvDcQACnR 44 (51)
T PF15174_consen 20 TLKAVAVTHSLWHLQIPVDCQACNR 44 (51)
T ss_pred HHHHHHHHHHHHhhcCCcchhhhcc
Confidence 4455666778888889999999986
No 267
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=23.13 E-value=48 Score=18.33 Aligned_cols=9 Identities=33% Similarity=1.043 Sum_probs=6.6
Q ss_pred cccCCCCCC
Q psy3842 103 PLDCPICDQ 111 (139)
Q Consensus 103 ~~~C~~C~~ 111 (139)
...|++|+.
T Consensus 21 ~~~Cp~CG~ 29 (46)
T PRK00398 21 GVRCPYCGY 29 (46)
T ss_pred ceECCCCCC
Confidence 567888873
No 268
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=22.76 E-value=55 Score=22.05 Aligned_cols=19 Identities=26% Similarity=0.495 Sum_probs=13.6
Q ss_pred eeccccccCCCCCCCCcch
Q psy3842 98 LLVNHPLDCPICDQGGECD 116 (139)
Q Consensus 98 ~l~~~~~~C~~C~~g~~~e 116 (139)
-|...|.+||+|+.--..+
T Consensus 21 DLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 21 DLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cCCCCCccCCCCCCccCcc
Confidence 3556888999999755444
No 269
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=22.72 E-value=77 Score=15.45 Aligned_cols=6 Identities=50% Similarity=1.508 Sum_probs=3.2
Q ss_pred cCCCCC
Q psy3842 105 DCPICD 110 (139)
Q Consensus 105 ~C~~C~ 110 (139)
.||.|+
T Consensus 18 ~CPnCG 23 (24)
T PF07754_consen 18 PCPNCG 23 (24)
T ss_pred eCCCCC
Confidence 455554
No 270
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=22.36 E-value=36 Score=28.36 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=16.2
Q ss_pred eeccc--CceecccCCcccccce
Q psy3842 76 LSELS--GKRESTCAPAREGVME 96 (139)
Q Consensus 76 ~~~~~--g~~~~~CPtgal~~~e 96 (139)
.|+.| ..|++.||.||+.-++
T Consensus 182 iCeHCLNPsCvasCPsgaiYKRe 204 (513)
T COG1140 182 LCEHCLNPSCVASCPSGAIYKRE 204 (513)
T ss_pred HHhhcCCcHHhhcCCcccccccc
Confidence 56665 5899999999986443
No 271
>PF12404 DUF3663: Peptidase ; InterPro: IPR008330 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family represents the peptidase B group of leucyl aminopeptidases, which are restricted to the gammaproteobacteria. They contain a C-terminal aminopeptidase catalytic domain and an N-terminal domain of unknown function. They are zinc-dependent exopeptidases (3.4.11.1 from EC) and belong to MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF). They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing, catabolism and degradation of intracellular proteins [, , ]. Leucyl aminopeptidase forms a homohexamer containing two trimers stacked on top of one another []. Each monomer binds two zinc ions. The zinc-binding and catalytic sites are located within the C-terminal catalytic domain []. The same catalytic aminopeptidase domain is found in the other M17 peptidases IPR011356 from INTERPRO. These two groups of aminopeptidases differ by their N-terminal domains. The N-terminal domain in members of IPR011356 from INTERPRO has been implicated in DNA binding [, ] and it is not associated with members of this family which have a different N-terminal domain and therefore are not expected to bind DNA or be involved in transcriptional regulation. In addition, there are related proteins with the same catalytic domain and unique N-terminal sequences unrelated to any of the two N-terminal domains discussed above. For additional information please see [, , , ]. ; GO: 0004177 aminopeptidase activity, 0008235 metalloexopeptidase activity, 0030145 manganese ion binding, 0005737 cytoplasm
Probab=22.18 E-value=1.1e+02 Score=19.39 Aligned_cols=23 Identities=9% Similarity=0.212 Sum_probs=17.0
Q ss_pred CCCCEEE-cCCHHHHHHHHHHHHH
Q psy3842 1 MKGWRVK-TNSEMTRRAREGVMEF 23 (139)
Q Consensus 1 ~~Gm~V~-T~s~~v~~~r~~~lel 23 (139)
++||.|+ +..+.++.++|..-+|
T Consensus 24 ~~ga~IHl~~~~~l~~IQrAaRkL 47 (77)
T PF12404_consen 24 EQGATIHLSEGDDLRAIQRAARKL 47 (77)
T ss_pred CCCEEEEECCCcchHHHHHHHHHH
Confidence 4688887 5667788887777665
No 272
>PRK15360 pathogenicity island 2 effector protein SseE; Provisional
Probab=22.18 E-value=1.3e+02 Score=21.23 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=20.1
Q ss_pred CEEEcC--CHHHHHHHHHHHHHHHHhCC
Q psy3842 4 WRVKTN--SEMTRRAREGVMEFLLVNHP 29 (139)
Q Consensus 4 m~V~T~--s~~v~~~r~~~lelll~~h~ 29 (139)
|.|.|| .|.++..|+.+++.|++...
T Consensus 87 mlii~~~~~~~l~~~R~rL~~vL~a~GA 114 (137)
T PRK15360 87 MLIITDVLDEKKAMLRRKLLRILTVMGA 114 (137)
T ss_pred heeeccccCHHHHHHHHHHHHHHHHcCC
Confidence 445554 69999999999999988654
No 273
>PF12801 Fer4_5: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=21.68 E-value=21 Score=19.78 Aligned_cols=12 Identities=8% Similarity=-0.147 Sum_probs=9.1
Q ss_pred eecccCCccccc
Q psy3842 83 RESTCAPAREGV 94 (139)
Q Consensus 83 ~~~~CPtgal~~ 94 (139)
|..+||.|++..
T Consensus 24 C~~~CP~g~~~~ 35 (48)
T PF12801_consen 24 CGWLCPFGALQE 35 (48)
T ss_pred HhccCCchHHHH
Confidence 667899998754
No 274
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=21.44 E-value=28 Score=28.58 Aligned_cols=17 Identities=12% Similarity=0.032 Sum_probs=15.1
Q ss_pred eecccCceecccCCccc
Q psy3842 76 LSELSGKRESTCAPARE 92 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal 92 (139)
+|..|++|+++||-..+
T Consensus 246 ~CI~C~~CidaCd~~~~ 262 (386)
T COG0348 246 ECIGCGRCIDACDDDML 262 (386)
T ss_pred ccccHhhHhhhCCHHhh
Confidence 58999999999998775
No 275
>COG3373 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.20 E-value=1.9e+02 Score=19.07 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCCCc
Q psy3842 14 RRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRS 55 (139)
Q Consensus 14 ~~~r~~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~ 55 (139)
-+.||.+|.+|.+-.|.. -+|.+++...+.+++
T Consensus 16 SeLRrkiL~yLy~iYP~~---------~YLSEIsR~V~SDPS 48 (108)
T COG3373 16 SELRRKILFYLYSIYPYR---------SYLSEISRAVKSDPS 48 (108)
T ss_pred HHHHHHHHHHHHHHccch---------hHHHHHHHHHcCCch
Confidence 467999999999999973 589999888877664
No 276
>PF13186 SPASM: Iron-sulfur cluster-binding domain
Probab=20.00 E-value=1.1e+02 Score=17.17 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=12.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCCCCc
Q psy3842 9 NSEMTRRAREGVMEFLLVNHPLDCPIC 35 (139)
Q Consensus 9 ~s~~v~~~r~~~lelll~~h~~~C~~C 35 (139)
+|++.++.|+....- ....|..|
T Consensus 41 ~s~~~~~~r~~~~~~----~~~~C~~C 63 (64)
T PF13186_consen 41 NSPKFREFRKRHKKN----NFEPCKNC 63 (64)
T ss_pred CCHHHHHHHHHHhCC----CCCcCCCC
Confidence 556666655554433 34456555
Done!