Query psy3842
Match_columns 139
No_of_seqs 173 out of 1603
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 18:49:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3842.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3842hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i9v_3 NADH-quinone oxidoreduc 99.9 1.5E-25 5.1E-30 193.5 7.6 119 1-119 88-269 (783)
2 3c8y_A Iron hydrogenase 1; dit 99.6 4.7E-15 1.6E-19 124.4 7.7 93 1-94 67-168 (574)
3 3i9v_3 NADH-quinone oxidoreduc 98.2 2.2E-07 7.5E-12 80.3 -0.4 98 19-127 18-140 (783)
4 2c42_A Pyruvate-ferredoxin oxi 97.6 3E-05 1E-09 70.1 3.6 72 11-94 632-705 (1231)
5 1kf6_B Fumarate reductase iron 97.4 1.1E-05 3.9E-10 60.2 -1.8 65 28-92 91-163 (243)
6 3c8y_A Iron hydrogenase 1; dit 97.3 0.00017 5.7E-09 60.4 4.5 76 50-131 43-124 (574)
7 2wdq_B Succinate dehydrogenase 96.6 2.8E-05 9.5E-10 57.9 -5.8 72 19-92 89-164 (238)
8 3cf4_A Acetyl-COA decarboxylas 96.6 3.4E-05 1.2E-09 67.0 -6.0 48 2-52 335-390 (807)
9 2fgo_A Ferredoxin; allochromat 96.0 0.0024 8.3E-08 39.3 1.7 19 76-94 7-25 (82)
10 2zvs_A Uncharacterized ferredo 95.9 0.0031 1E-07 39.2 1.6 19 76-94 7-25 (85)
11 1rgv_A Ferredoxin; electron tr 95.8 0.0031 1.1E-07 38.6 1.5 19 76-94 7-25 (80)
12 2fdn_A Ferredoxin; electron tr 95.8 0.0037 1.2E-07 35.4 1.7 19 76-94 7-25 (55)
13 3eun_A Ferredoxin; electron tr 95.8 0.0036 1.2E-07 38.6 1.8 18 77-94 8-25 (82)
14 1bc6_A 7-Fe ferredoxin; electr 95.1 0.0079 2.7E-07 36.4 1.6 13 80-92 13-25 (77)
15 1jb0_C Photosystem I iron-sulf 94.8 0.0065 2.2E-07 36.8 0.6 24 74-97 44-67 (80)
16 1dwl_A Ferredoxin I; electron 94.7 0.0085 2.9E-07 33.9 0.8 20 74-93 38-57 (59)
17 1h98_A Ferredoxin; electron tr 94.4 0.01 3.6E-07 36.0 0.7 18 76-93 38-55 (78)
18 1h98_A Ferredoxin; electron tr 94.3 0.0083 2.8E-07 36.5 0.1 19 76-94 7-27 (78)
19 7fd1_A FD1, protein (7-Fe ferr 94.3 0.011 3.8E-07 38.1 0.7 20 76-95 38-57 (106)
20 2fdn_A Ferredoxin; electron tr 94.2 0.0077 2.6E-07 34.0 -0.1 19 75-93 35-53 (55)
21 1f2g_A Ferredoxin II; electron 94.2 0.0059 2E-07 34.7 -0.6 21 74-94 37-57 (58)
22 1jb0_C Photosystem I iron-sulf 94.1 0.018 6.2E-07 34.7 1.5 20 76-95 9-28 (80)
23 7fd1_A FD1, protein (7-Fe ferr 94.1 0.013 4.3E-07 37.8 0.8 18 76-93 7-26 (106)
24 1xer_A Ferredoxin; electron tr 94.1 0.0077 2.6E-07 38.4 -0.3 20 75-94 81-100 (103)
25 1dax_A Ferredoxin I; electron 94.1 0.0043 1.5E-07 36.1 -1.4 21 75-95 42-62 (64)
26 1xer_A Ferredoxin; electron tr 94.1 0.018 6E-07 36.7 1.4 20 76-95 44-63 (103)
27 3i9v_9 NADH-quinone oxidoreduc 93.9 0.016 5.4E-07 40.6 0.9 21 74-94 50-70 (182)
28 1bc6_A 7-Fe ferredoxin; electr 93.8 0.011 3.7E-07 35.8 -0.1 21 75-95 37-57 (77)
29 1rof_A Ferredoxin; electron tr 93.8 0.0066 2.2E-07 34.5 -1.0 21 74-94 38-58 (60)
30 2v2k_A Ferredoxin; iron, trans 93.6 0.018 6.3E-07 36.9 0.8 21 75-95 37-57 (105)
31 2v2k_A Ferredoxin; iron, trans 93.3 0.021 7.3E-07 36.6 0.8 19 76-94 7-27 (105)
32 3i9v_9 NADH-quinone oxidoreduc 93.1 0.015 5.2E-07 40.7 -0.2 21 74-94 95-115 (182)
33 1sj1_A Ferredoxin; thermostabi 92.5 0.01 3.6E-07 34.3 -1.5 19 77-95 46-64 (66)
34 1iqz_A Ferredoxin; iron-sulfer 92.3 0.012 4.2E-07 36.0 -1.4 21 76-96 50-70 (81)
35 1rgv_A Ferredoxin; electron tr 92.0 0.03 1E-06 34.0 0.1 22 74-95 34-61 (80)
36 1jnr_B Adenylylsulfate reducta 91.6 0.029 9.9E-07 38.8 -0.4 21 74-94 44-64 (150)
37 2fgo_A Ferredoxin; allochromat 91.5 0.035 1.2E-06 33.9 0.0 21 75-95 35-61 (82)
38 3eun_A Ferredoxin; electron tr 91.0 0.035 1.2E-06 34.0 -0.4 21 75-95 35-61 (82)
39 3gyx_B Adenylylsulfate reducta 90.8 0.041 1.4E-06 38.7 -0.2 21 74-94 43-63 (166)
40 1hfe_L Protein (Fe-only hydrog 90.1 0.074 2.5E-06 42.7 0.7 21 74-94 63-83 (421)
41 1hfe_L Protein (Fe-only hydrog 89.8 0.093 3.2E-06 42.2 1.1 20 75-94 33-52 (421)
42 2zvs_A Uncharacterized ferredo 88.7 0.07 2.4E-06 32.8 -0.3 20 75-94 35-61 (85)
43 1gte_A Dihydropyrimidine dehyd 88.7 0.15 5.1E-06 45.2 1.7 80 11-93 880-972 (1025)
44 2vpz_B NRFC protein; oxidoredu 88.2 0.19 6.3E-06 36.1 1.6 16 77-92 58-75 (195)
45 1jnr_B Adenylylsulfate reducta 87.3 0.14 4.8E-06 35.3 0.5 19 76-94 9-32 (150)
46 2wdq_B Succinate dehydrogenase 87.3 0.11 3.7E-06 38.2 -0.1 21 73-93 202-222 (238)
47 3gyx_B Adenylylsulfate reducta 87.2 0.16 5.6E-06 35.5 0.8 19 76-94 8-31 (166)
48 2ivf_B Ethylbenzene dehydrogen 86.2 0.13 4.6E-06 40.5 -0.1 19 76-94 183-201 (352)
49 2vpz_B NRFC protein; oxidoredu 85.6 0.16 5.5E-06 36.5 0.0 19 76-94 89-107 (195)
50 3mm5_A Sulfite reductase, diss 85.2 0.2 6.8E-06 40.4 0.4 31 80-110 260-290 (418)
51 3mm5_B Sulfite reductase, diss 84.1 0.19 6.6E-06 39.6 -0.1 18 76-93 240-257 (366)
52 3or1_B Sulfite reductase beta; 83.6 0.2 7E-06 39.8 -0.1 18 76-93 257-274 (386)
53 2c42_A Pyruvate-ferredoxin oxi 82.7 0.22 7.5E-06 45.2 -0.3 21 74-94 741-763 (1231)
54 1ti6_B Pyrogallol hydroxytrans 82.7 0.39 1.3E-05 36.4 1.1 32 76-109 98-129 (274)
55 1q16_B Respiratory nitrate red 81.8 0.23 8E-06 41.0 -0.5 19 76-94 216-234 (512)
56 2ivf_B Ethylbenzene dehydrogen 80.5 0.43 1.5E-05 37.6 0.6 20 75-94 149-170 (352)
57 1ti6_B Pyrogallol hydroxytrans 79.8 0.38 1.3E-05 36.4 0.1 24 73-96 122-158 (274)
58 3mm5_B Sulfite reductase, diss 78.3 0.42 1.4E-05 37.6 -0.0 14 81-94 214-227 (366)
59 1kqf_B FDH-N beta S, formate d 76.9 0.51 1.7E-05 36.0 0.1 16 77-92 133-148 (294)
60 2h88_B Succinate dehydrogenase 76.6 0.45 1.5E-05 35.3 -0.3 20 73-92 211-230 (252)
61 1h0h_B Formate dehydrogenase ( 76.3 0.5 1.7E-05 34.3 -0.2 21 74-94 134-163 (214)
62 1kqf_B FDH-N beta S, formate d 76.3 0.71 2.4E-05 35.2 0.7 20 75-94 98-120 (294)
63 2bs2_B Quinol-fumarate reducta 75.8 0.52 1.8E-05 34.6 -0.1 21 72-92 203-223 (241)
64 1t3q_A Quinoline 2-oxidoreduct 75.6 0.42 1.4E-05 33.6 -0.7 80 2-91 76-158 (168)
65 1h0h_B Formate dehydrogenase ( 74.9 0.47 1.6E-05 34.4 -0.6 18 76-93 107-126 (214)
66 2k53_A A3DK08 protein; NESG, C 74.1 4.2 0.00015 24.6 3.8 34 24-57 22-55 (76)
67 1q16_B Respiratory nitrate red 73.7 1 3.5E-05 37.2 1.1 20 75-94 182-203 (512)
68 3or1_B Sulfite reductase beta; 72.5 0.83 2.8E-05 36.2 0.3 15 80-94 224-238 (386)
69 3or1_A Sulfite reductase alpha 72.4 0.89 3E-05 36.8 0.4 14 81-94 278-291 (437)
70 2bs2_B Quinol-fumarate reducta 71.4 0.42 1.4E-05 35.1 -1.6 18 75-92 149-166 (241)
71 1gte_A Dihydropyrimidine dehyd 70.8 0.82 2.8E-05 40.5 -0.1 22 75-96 984-1006(1025)
72 1g8k_A Arsenite oxidase; molyb 69.3 1.1 3.9E-05 38.6 0.4 33 87-119 2-34 (825)
73 3mm5_A Sulfite reductase, diss 64.5 1.3 4.3E-05 35.7 -0.2 18 76-93 285-302 (418)
74 3or1_A Sulfite reductase alpha 64.4 1.2 4.1E-05 36.1 -0.4 18 76-93 302-319 (437)
75 3vr8_B Iron-sulfur subunit of 63.9 2 6.9E-05 32.7 0.8 20 73-92 235-254 (282)
76 3cf4_A Acetyl-COA decarboxylas 63.2 1.4 4.9E-05 38.3 -0.1 21 74-94 452-472 (807)
77 2h88_B Succinate dehydrogenase 61.5 1.3 4.5E-05 32.7 -0.6 19 74-92 155-173 (252)
78 2pa8_D DNA-directed RNA polyme 59.5 3.3 0.00011 30.9 1.3 33 78-110 174-207 (265)
79 3vr8_B Iron-sulfur subunit of 56.2 2.7 9.4E-05 31.9 0.4 20 73-92 178-197 (282)
80 2gmh_A Electron transfer flavo 49.6 4.9 0.00017 33.2 0.9 33 78-110 519-557 (584)
81 2gmh_A Electron transfer flavo 48.9 3.3 0.00011 34.2 -0.3 17 76-92 552-568 (584)
82 1kf6_B Fumarate reductase iron 47.4 8 0.00027 28.1 1.7 54 78-132 68-121 (243)
83 3j16_B RLI1P; ribosome recycli 43.6 5 0.00017 33.7 0.0 20 76-95 54-73 (608)
84 2heo_A Z-DNA binding protein 1 37.6 25 0.00087 20.1 2.6 36 12-57 7-42 (67)
85 2b9d_A E7 protein; zinc finger 31.7 44 0.0015 18.6 2.8 30 5-38 21-50 (52)
86 1uku_A CUTA1, periplasmic diva 27.0 41 0.0014 21.4 2.4 27 4-34 53-79 (102)
87 1dzf_A DNA-directed RNA polyme 24.4 25 0.00085 25.6 1.0 47 3-52 2-48 (215)
88 1p1l_A CUTA, periplasmic dival 23.9 40 0.0014 21.4 1.9 26 4-33 54-79 (102)
89 1vq8_Z 50S ribosomal protein L 23.1 60 0.0021 19.8 2.5 23 15-37 12-35 (83)
90 1nza_A CUTA, divalent cation t 22.9 42 0.0014 21.4 1.8 26 4-33 55-80 (103)
91 1ffk_W Ribosomal protein L37AE 22.6 75 0.0026 19.0 2.8 23 15-37 12-35 (73)
92 3ahp_A CUTA1; thermostable pro 22.3 44 0.0015 21.5 1.8 26 4-33 59-84 (108)
93 2k5e_A Uncharacterized protein 22.0 48 0.0016 19.5 1.9 34 24-57 24-57 (73)
94 1naq_A Periplasmic divalent ca 22.0 47 0.0016 21.5 1.9 26 4-33 64-89 (112)
95 2zom_A CUTA1, protein CUTA, ch 21.1 50 0.0017 21.4 1.9 27 4-34 63-89 (113)
96 1lko_A Rubrerythrin all-iron(I 20.7 46 0.0016 23.4 1.8 27 74-113 155-181 (191)
97 1n62_A Carbon monoxide dehydro 20.7 16 0.00053 25.5 -0.7 38 2-39 70-109 (166)
98 3gsd_A Divalent-cation toleran 20.4 51 0.0017 21.7 1.9 26 4-33 74-99 (122)
No 1
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=99.92 E-value=1.5e-25 Score=193.49 Aligned_cols=119 Identities=32% Similarity=0.601 Sum_probs=94.2
Q ss_pred CCCCEEEcCCHHHHHHHHHHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCC-------------Ccccccc-------
Q psy3842 1 MKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSD-------------RSRFTDI------- 60 (139)
Q Consensus 1 ~~Gm~V~T~s~~v~~~r~~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~-------------~~r~~~~------- 60 (139)
++||+|+|+||+++++||.+|||||+|||+||++|+++|+|+||+++..||+. ..+|...
T Consensus 88 ~~gm~v~t~~~~~~~~r~~~le~ll~nhp~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~p~~~r~~~~k~~~~~~ 167 (783)
T 3i9v_3 88 ADGMVVDTLSDVVREAQAGMVEFTLLNHPLDCPTCDKGGACELQDRTVEYGLYEKYYQKGPLELPVYTRFEFTRRHVDKH 167 (783)
T ss_dssp CSSEEEESSSHHHHHHHHHHHHHHHTSCCCCTTTCTTGGGCHHHHHHHHHCSCCCC------CCCCCCCCCSCCCCCCCS
T ss_pred CCCCEEEECCHHHHHHHHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHHhCCccccccccccccccccccccccccCCcc
Confidence 58999999999999999999999999999999999999999999999999993 2344321
Q ss_pred -------ccCCCcc--------------cc------------cc---ccceeecccCceecccCCcccccce-------e
Q psy3842 61 -------DFSGKRW--------------GY------------LR---EKLFLSELSGKRESTCAPAREGVME-------F 97 (139)
Q Consensus 61 -------~~~~~r~--------------~t------------~~---~~~~~~~~~g~~~~~CPtgal~~~e-------~ 97 (139)
.++.+|| +. .+ +....|+.||+|+++||||||+.++ |
T Consensus 168 ~~~~p~i~~d~~~CI~C~~Cv~~C~~~~~~~~i~~~~~g~~~~i~~~~~~~~C~~CG~Cv~vCP~gAl~~~~~~~~~r~w 247 (783)
T 3i9v_3 168 HPLSPFVILDRERCIHCKRCVRYFEEVPGDEVLDFIERGVHTFIGTMDFGLPSGFSGNITDICPVGALLDLTARFRARNW 247 (783)
T ss_dssp EEEETTEEECTTTCCCCCHHHHHHHHTTCCCCCEECSCTTSCCEECSSTTCCSTTTTTHHHHCSSSSEEEGGGTTSCCTT
T ss_pred cCCCccEEEchhhCCCccHHHHHhhhhcCCceeeeecCCCccEEccCCCCCCCccchhHHhhcccCceeccccccccccc
Confidence 0122333 00 01 1223699999999999999997553 5
Q ss_pred eeccccccCCCCCCCCcchhHH
Q psy3842 98 LLVNHPLDCPICDQGGECDLQD 119 (139)
Q Consensus 98 ~l~~~~~~C~~C~~g~~~eL~~ 119 (139)
.++..+++|++|+.||+..++.
T Consensus 248 ~~~~~~s~C~~C~~gC~i~v~v 269 (783)
T 3i9v_3 248 EMEETPTTCALCPVGCGITADT 269 (783)
T ss_dssp TSEEEEEECCSSSSCCEEEEEE
T ss_pred cceEEEEeCCCCCCcccceeee
Confidence 6677889999999999987743
No 2
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=99.56 E-value=4.7e-15 Score=124.37 Aligned_cols=93 Identities=16% Similarity=0.226 Sum_probs=73.9
Q ss_pred CCCCEEEcCCHHHHHHHHHHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCCC-ccc-cccccCCCcc--cc-ccccce
Q psy3842 1 MKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDR-SRF-TDIDFSGKRW--GY-LREKLF 75 (139)
Q Consensus 1 ~~Gm~V~T~s~~v~~~r~~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~-~r~-~~~~~~~~r~--~t-~~~~~~ 75 (139)
.+||+|.|+++.+++.|+.++++|+++|+.+|+.|.+++.|+||+++..+|+.. .+| ......- .+ .. ..-...
T Consensus 67 ~~gm~V~T~~~~~~~~r~~~lelll~~h~~~C~~C~~~~~C~Lq~~a~~~Gv~~~~~f~~~~~~~~-~~~~~~~i~~d~~ 145 (574)
T 3c8y_A 67 EDGMIINTNSDAVNEKIKSRISQLLDIHEFKCGPCNRRENCEFLKLVIKYKARASKPFLPKDKTEY-VDERSKSLTVDRT 145 (574)
T ss_dssp CTTCEEESSCHHHHHHHHHHHHHHHTTSCCCCTTCTTTTSCHHHHHHHHHTCCCSSCCCCSCGGGG-EECCSSSEEEEGG
T ss_pred ccceeEEecchhhhhhHHHHHHHHHhccCCCCCcCCCCcchHHHHHHHHhccCCCcCCCCCccccc-cccCCCcceeCcc
Confidence 489999999999999999999999999999999999999999999999999987 666 2210000 01 00 112344
Q ss_pred eecccCceecccCC----ccccc
Q psy3842 76 LSELSGKRESTCAP----AREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPt----gal~~ 94 (139)
.|+.||.|+.+||+ +|+..
T Consensus 146 kCi~Cg~Cv~~CP~~~~~~ai~~ 168 (574)
T 3c8y_A 146 KCLLCGRCVNACGKNTETYAMKF 168 (574)
T ss_dssp GCCCCCHHHHHHHHHHSCCCSEE
T ss_pred cCcCCCCccchhCchhcCCceee
Confidence 68999999999998 77754
No 3
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=98.16 E-value=2.2e-07 Score=80.34 Aligned_cols=98 Identities=32% Similarity=0.575 Sum_probs=69.4
Q ss_pred HHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCCCcccccccc-------------CCC-------c----cccc-ccc
Q psy3842 19 GVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDF-------------SGK-------R----WGYL-REK 73 (139)
Q Consensus 19 ~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~~~~~~-------------~~~-------r----~~t~-~~~ 73 (139)
.+|+.++...-.- ...|++.++. ..|.|+.|.+++.- +|+ + |.|. .++
T Consensus 18 til~a~~~~gi~i------p~~C~~~~~~-~~G~C~~C~V~v~~~~~~~~g~~~~~~~G~~~~~~~~~~~~aC~t~v~~g 90 (783)
T 3i9v_3 18 SVMDAVFHAGYDV------PLFCSEKHLS-PIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQPKLAASCVTAVADG 90 (783)
T ss_dssp BHHHHHHHTTCCC------CCSSCCTTSC-CCCCSCCSEEEEECC-----------------CCBCSSCEETTTCBCCSS
T ss_pred hHHHHHHHhCCCc------cccCCCCCCC-CCcccCCcEEEecccccccccccccccccccccccCCCcccccCCCCCCC
Confidence 3566665543211 1245555554 56888888877620 111 0 1222 468
Q ss_pred ceeecccCceecccCCcccccceeeeccccccCCCCCCCCcchhHHHHHHhCCC
Q psy3842 74 LFLSELSGKRESTCAPAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSD 127 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~~e~~l~~~~~~C~~C~~g~~~eL~~~~~~~gv~ 127 (139)
|.+.+.+.+... .+..++||+|.+||.+|+.|..+++|+||+++..+|+.
T Consensus 91 m~v~t~~~~~~~----~r~~~le~ll~nhp~dC~~C~~~g~C~Lq~~~~~~g~~ 140 (783)
T 3i9v_3 91 MVVDTLSDVVRE----AQAGMVEFTLLNHPLDCPTCDKGGACELQDRTVEYGLY 140 (783)
T ss_dssp EEEESSSHHHHH----HHHHHHHHHHTSCCCCTTTCTTGGGCHHHHHHHHHCSC
T ss_pred CEEEECCHHHHH----HHHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHHhCCc
Confidence 888888888877 77889999999999999999999999999999999993
No 4
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=97.61 E-value=3e-05 Score=70.06 Aligned_cols=72 Identities=14% Similarity=0.054 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCcCCC--CcchhHHHHHHhCCCCccccccccCCCccccccccceeecccCceecccC
Q psy3842 11 EMTRRAREGVMEFLLVNHPLDCPICDQG--GECDLQDQSMAFGSDRSRFTDIDFSGKRWGYLREKLFLSELSGKRESTCA 88 (139)
Q Consensus 11 ~~v~~~r~~~lelll~~h~~~C~~C~~~--g~C~Lq~l~~~~g~~~~r~~~~~~~~~r~~t~~~~~~~~~~~g~~~~~CP 88 (139)
+.+.++||.++++|+++|+.+|++|+.+ |.|.+.. . .|... +-......-....|+.||.|+.+||
T Consensus 632 ~~~~~f~k~v~~~ll~~~g~~~pv~~~~~dG~~p~G~-------~--~~~k~---~i~~~~p~~d~~kCi~Cg~Cv~vCP 699 (1231)
T 2c42_A 632 PMTNEFFKNVVKPILTQQGDKLPVSAFEADGRFPLGT-------S--QFEKR---GVAINVPQWVPENCIQCNQCAFVCP 699 (1231)
T ss_dssp CCCCHHHHHTHHHHHTTCGGGSCGGGSCTTCCBCTTG-------G--GGTCC---CCCSEEEEECTTTCCCCCHHHHHCS
T ss_pred hhHHHHHHHHHHHHHhCCCCCCCccccCCCCcccCCc-------c--ccccc---CCCccceEEeCccCCchhhHHHhCC
Confidence 3567899999999999999999999876 7777531 1 12111 0000011223457999999999999
Q ss_pred Cccccc
Q psy3842 89 PAREGV 94 (139)
Q Consensus 89 tgal~~ 94 (139)
++|+..
T Consensus 700 ~~AI~~ 705 (1231)
T 2c42_A 700 HSAILP 705 (1231)
T ss_dssp SCCEEE
T ss_pred cccccc
Confidence 999753
No 5
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=97.39 E-value=1.1e-05 Score=60.23 Aligned_cols=65 Identities=6% Similarity=-0.096 Sum_probs=46.2
Q ss_pred CCCCCCCcCCCCcchhHHHHHHhCCCCccccccccCC--C-ccc-----cccccceeecccCceecccCCccc
Q psy3842 28 HPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFSG--K-RWG-----YLREKLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 28 h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~~~~~~~~--~-r~~-----t~~~~~~~~~~~g~~~~~CPtgal 92 (139)
||++|+.|.+++.|+||+++..++.....+....... + +.- ........|..||.|+.+||+.+.
T Consensus 91 ~~l~~~~~~kdl~~dl~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~~~ 163 (243)
T 1kf6_B 91 EALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGL 163 (243)
T ss_dssp ECCTTSCEEETTEECCHHHHHHHHHTCCSCCSCCCCGGGCCCCCCHHHHHTTGGGGCCCCCCHHHHHCHHHHH
T ss_pred EecCCCCccceeEEecHHHHHHHHhcCCeeccCcCCCccccccCCHHHHHHhhhhhhccccCccccccCCCcc
Confidence 9999999999999999999999887655553210000 0 100 012345579999999999999875
No 6
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=97.34 E-value=0.00017 Score=60.45 Aligned_cols=76 Identities=12% Similarity=0.290 Sum_probs=63.1
Q ss_pred hCCCCccccccccCCCcc----cc-ccccceeecccCceecccCCcccccceeeeccccccCCCCCCCCcchhHHHHHHh
Q psy3842 50 FGSDRSRFTDIDFSGKRW----GY-LREKLFLSELSGKRESTCAPAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAF 124 (139)
Q Consensus 50 ~g~~~~r~~~~~~~~~r~----~t-~~~~~~~~~~~g~~~~~CPtgal~~~e~~l~~~~~~C~~C~~g~~~eL~~~~~~~ 124 (139)
.|.+..|.+++ +|.+. .+ ..++|.+-|..+.... .++..+++++++|+..|.+|..++.|+||+++..+
T Consensus 43 ~G~Cg~C~V~v--~g~~~~~aC~t~v~~gm~V~T~~~~~~~----~r~~~lelll~~h~~~C~~C~~~~~C~Lq~~a~~~ 116 (574)
T 3c8y_A 43 INKCEICTVEV--EGTGLVTACDTLIEDGMIINTNSDAVNE----KIKSRISQLLDIHEFKCGPCNRRENCEFLKLVIKY 116 (574)
T ss_dssp SSCCCTTEEEE--TTTEEEEGGGCBCCTTCEEESSCHHHHH----HHHHHHHHHHTTSCCCCTTCTTTTSCHHHHHHHHH
T ss_pred cccCCCCEEEe--CCCcccccCCCCcccceeEEecchhhhh----hHHHHHHHHHhccCCCCCcCCCCcchHHHHHHHHh
Confidence 67888888776 45421 22 2478989898888877 77788899999999999999999999999999999
Q ss_pred CCCC-CCC
Q psy3842 125 GSDR-SRF 131 (139)
Q Consensus 125 gv~~-~rf 131 (139)
|+.. .+|
T Consensus 117 Gv~~~~~f 124 (574)
T 3c8y_A 117 KARASKPF 124 (574)
T ss_dssp TCCCSSCC
T ss_pred ccCCCcCC
Confidence 9998 787
No 7
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=96.63 E-value=2.8e-05 Score=57.95 Aligned_cols=72 Identities=11% Similarity=-0.002 Sum_probs=47.5
Q ss_pred HHHHHHHHhCCC-CCCCcCCCCcc-hhHHHHHHhCCCCccc-cccccCCCcc-ccccccceeecccCceecccCCccc
Q psy3842 19 GVMEFLLVNHPL-DCPICDQGGEC-DLQDQSMAFGSDRSRF-TDIDFSGKRW-GYLREKLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 19 ~~lelll~~h~~-~C~~C~~~g~C-~Lq~l~~~~g~~~~r~-~~~~~~~~r~-~t~~~~~~~~~~~g~~~~~CPtgal 92 (139)
..||.|+ +||. +|++|+.++.| +||++...+++.. ++ ....+.-... .........|..||.|+++||+.+.
T Consensus 89 ~~ie~l~-~~pvi~dlv~d~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~~~ 164 (238)
T 2wdq_B 89 IVIRPLP-GLPVIRDLVVDMGQFYAQYEKIKPYLLNNG-QNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWW 164 (238)
T ss_dssp EEEECCT-TSBEEETTEECCHHHHHHHHHTCCSCCCCC-SSCCSSSCCCCHHHHHTTTTTTTCCCCCTTGGGCHHHHH
T ss_pred EEEeeCC-CCcchhhceechHHHHHHHHhhcCccccCc-CCCCcccccCCHHHHHHHhccccccccCCchhhCcCCcc
Confidence 4677776 9999 99999999995 8998875666543 23 1110000000 0112355689999999999999874
No 8
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=96.62 E-value=3.4e-05 Score=67.00 Aligned_cols=48 Identities=13% Similarity=0.005 Sum_probs=37.9
Q ss_pred CCCEEEcCCHHHHHHH--------HHHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCC
Q psy3842 2 KGWRVKTNSEMTRRAR--------EGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGS 52 (139)
Q Consensus 2 ~Gm~V~T~s~~v~~~r--------~~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~ 52 (139)
.||.|.|.||.+..-| +.++++|+++|+..|.. .|.+.+++++..++.
T Consensus 335 ~Gm~Vit~sp~~~~Grpd~~d~~~~~~le~LLs~~~~~~l~---~g~~~~~elai~~a~ 390 (807)
T 3cf4_A 335 LKIPVIASNPKIMYGLPNRTDADVDETMEELKSGKIPGCVM---LDYDKLGELCVRLTM 390 (807)
T ss_dssp TTCCEEECSTTCCTTCCBCTTSCHHHHHHHHHTTSSSEEEC---CCHHHHHHHHHHHHH
T ss_pred CCCEEEEechhhhcCCCccccchHHHHHHHHHhCCCCCcee---eCCccHHHHHHHHHh
Confidence 6999999999987555 89999999999766633 577888887555543
No 9
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=96.04 E-value=0.0024 Score=39.30 Aligned_cols=19 Identities=11% Similarity=-0.039 Sum_probs=14.8
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|+.||.|+.+||++|+..
T Consensus 7 ~C~~C~~C~~~CP~~ai~~ 25 (82)
T 2fgo_A 7 DCINCDVCEPECPNGAISQ 25 (82)
T ss_dssp TCCCCCTTGGGCTTCCEEE
T ss_pred CCCChhhHHHHCChhccCC
Confidence 4678888888888888754
No 10
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=95.86 E-value=0.0031 Score=39.20 Aligned_cols=19 Identities=11% Similarity=0.044 Sum_probs=13.3
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|..||.|+.+||++|+..
T Consensus 7 ~C~~C~~C~~~CP~~ai~~ 25 (85)
T 2zvs_A 7 KCINCDMCEPECPNEAISM 25 (85)
T ss_dssp TCCCCCTTTTTCTTCCEEC
T ss_pred cCcChhHHHHHCchhccCc
Confidence 3667777777777777653
No 11
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=95.83 E-value=0.0031 Score=38.61 Aligned_cols=19 Identities=5% Similarity=-0.080 Sum_probs=13.4
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|+.||.|+.+||++|+..
T Consensus 7 ~C~~C~~C~~~CP~~ai~~ 25 (80)
T 1rgv_A 7 DCTACDACVEECPNEAITP 25 (80)
T ss_dssp CCCCCCTTTTTCTTCCEEC
T ss_pred CCcChhhHHHHcChhccCc
Confidence 4667777777777777653
No 12
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=95.82 E-value=0.0037 Score=35.39 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=14.5
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|..||.|+.+||++++..
T Consensus 7 ~C~~C~~C~~~CP~~ai~~ 25 (55)
T 2fdn_A 7 ACISCGACEPECPVNAISS 25 (55)
T ss_dssp TCCCCCTTGGGCTTCCEEC
T ss_pred cCcChhhHHHHCCccccCc
Confidence 4677888888888888653
No 13
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=95.82 E-value=0.0036 Score=38.62 Aligned_cols=18 Identities=11% Similarity=0.032 Sum_probs=11.9
Q ss_pred ecccCceecccCCccccc
Q psy3842 77 SELSGKRESTCAPAREGV 94 (139)
Q Consensus 77 ~~~~g~~~~~CPtgal~~ 94 (139)
|..||.|+.+||++|+..
T Consensus 8 C~~C~~C~~~CP~~ai~~ 25 (82)
T 3eun_A 8 CINCDVCEPECPNGAISQ 25 (82)
T ss_dssp CCCCCTTGGGCTTCCEEE
T ss_pred CcCccchHHHCChhheEc
Confidence 566777777777776543
No 14
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=95.12 E-value=0.0079 Score=36.44 Aligned_cols=13 Identities=8% Similarity=0.054 Sum_probs=7.1
Q ss_pred cCceecccCCccc
Q psy3842 80 SGKRESTCAPARE 92 (139)
Q Consensus 80 ~g~~~~~CPtgal 92 (139)
||.|+.+||++|+
T Consensus 13 C~~C~~~Cp~~ai 25 (77)
T 1bc6_A 13 DASCVEVCPVDCI 25 (77)
T ss_dssp CCSSTTTCTTCCE
T ss_pred cchhHHhcccccE
Confidence 4555555555554
No 15
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=94.84 E-value=0.0065 Score=36.78 Aligned_cols=24 Identities=8% Similarity=0.008 Sum_probs=19.6
Q ss_pred ceeecccCceecccCCccccccee
Q psy3842 74 LFLSELSGKRESTCAPAREGVMEF 97 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~~e~ 97 (139)
...|+.||.|+.+||++|+.....
T Consensus 44 ~~~C~~Cg~C~~~CP~~ai~~~~~ 67 (80)
T 1jb0_C 44 TEDCVGCKRCETACPTDFLSIRVY 67 (80)
T ss_dssp GGGCCCCCHHHHHCCSSSCSEEEE
T ss_pred CCcCcCcCChhhhCCCCccEeeee
Confidence 456889999999999999876544
No 16
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=94.70 E-value=0.0085 Score=33.90 Aligned_cols=20 Identities=10% Similarity=0.013 Sum_probs=17.1
Q ss_pred ceeecccCceecccCCcccc
Q psy3842 74 LFLSELSGKRESTCAPAREG 93 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~ 93 (139)
...|+.||.|+.+||++|+.
T Consensus 38 ~~~c~~C~~C~~~CP~~Ai~ 57 (59)
T 1dwl_A 38 DSTAECAQDAIDACPVEAIS 57 (59)
T ss_dssp TCCCGGGGTGGGGSTTCCEE
T ss_pred hhhhhHHHHHHHhCCHhhEE
Confidence 34588999999999999975
No 17
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=94.36 E-value=0.01 Score=36.03 Aligned_cols=18 Identities=11% Similarity=-0.068 Sum_probs=10.3
Q ss_pred eecccCceecccCCcccc
Q psy3842 76 LSELSGKRESTCAPAREG 93 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~ 93 (139)
.|+.||.|+.+||++|+.
T Consensus 38 ~C~~C~~C~~~CP~~Ai~ 55 (78)
T 1h98_A 38 ECIDCGACVPACPVNAIY 55 (78)
T ss_dssp TCCCCCTHHHHCTTCCEE
T ss_pred cCCcHhHHHHhCCccceE
Confidence 355566666666666554
No 18
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=94.30 E-value=0.0083 Score=36.50 Aligned_cols=19 Identities=5% Similarity=-0.267 Sum_probs=15.9
Q ss_pred eecc--cCceecccCCccccc
Q psy3842 76 LSEL--SGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~--~g~~~~~CPtgal~~ 94 (139)
.|.. ||.|+.+||++|+..
T Consensus 7 ~C~~c~C~~C~~~CP~~ai~~ 27 (78)
T 1h98_A 7 PCIGVKDQSCVEVCPVECIYD 27 (78)
T ss_dssp GGTTTCCCHHHHHCTTCCEEE
T ss_pred hCCCCCcChhhhhcCccceEc
Confidence 4667 999999999999853
No 19
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=94.29 E-value=0.011 Score=38.13 Aligned_cols=20 Identities=10% Similarity=-0.144 Sum_probs=14.2
Q ss_pred eecccCceecccCCcccccc
Q psy3842 76 LSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~ 95 (139)
.|..||.|+.+||++|+...
T Consensus 38 ~C~~Cg~C~~~CP~~ai~~~ 57 (106)
T 7fd1_A 38 ECIDCALCEPECPAQAIFSE 57 (106)
T ss_dssp TCCCCCTTGGGCTTCCEEEG
T ss_pred cCCChhhhHHhCCChhhhcc
Confidence 46777777777777776543
No 20
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=94.24 E-value=0.0077 Score=33.98 Aligned_cols=19 Identities=11% Similarity=-0.043 Sum_probs=16.7
Q ss_pred eeecccCceecccCCcccc
Q psy3842 75 FLSELSGKRESTCAPAREG 93 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~ 93 (139)
..|+.||.|+.+||++|+.
T Consensus 35 ~~C~~C~~C~~~CP~~ai~ 53 (55)
T 2fdn_A 35 DTCIDCGACAGVCPVDAPV 53 (55)
T ss_dssp TTCCCCCHHHHTCTTCCEE
T ss_pred ccCcChhChHHHcccccee
Confidence 4588999999999999975
No 21
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=94.22 E-value=0.0059 Score=34.71 Aligned_cols=21 Identities=5% Similarity=-0.157 Sum_probs=17.7
Q ss_pred ceeecccCceecccCCccccc
Q psy3842 74 LFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~ 94 (139)
...|..||.|+++||++|+..
T Consensus 37 ~~~C~~C~~C~~~CP~~Ai~~ 57 (58)
T 1f2g_A 37 DSDLDCVEEAIDSCPAEAIVR 57 (58)
T ss_dssp TCCSTHHHHHHHTCSSCCCBC
T ss_pred ccchHHHHHHHhhCChhhEEe
Confidence 446889999999999999863
No 22
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=94.14 E-value=0.018 Score=34.70 Aligned_cols=20 Identities=5% Similarity=-0.036 Sum_probs=17.2
Q ss_pred eecccCceecccCCcccccc
Q psy3842 76 LSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~ 95 (139)
.|..||.|+.+||++++...
T Consensus 9 ~C~~Cg~C~~~CP~~a~~~~ 28 (80)
T 1jb0_C 9 TCIGCTQCVRACPTDVLEMV 28 (80)
T ss_dssp TCCCCCHHHHHCTTCCCEEE
T ss_pred cCcChhHHHHHCCccccccc
Confidence 58899999999999998643
No 23
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=94.11 E-value=0.013 Score=37.83 Aligned_cols=18 Identities=6% Similarity=-0.228 Sum_probs=15.7
Q ss_pred eecccC--ceecccCCcccc
Q psy3842 76 LSELSG--KRESTCAPAREG 93 (139)
Q Consensus 76 ~~~~~g--~~~~~CPtgal~ 93 (139)
.|..|| .|+.+||++++.
T Consensus 7 ~C~~C~~~~C~~~CP~~ai~ 26 (106)
T 7fd1_A 7 NCIKCKYTDCVEVCPVDCFY 26 (106)
T ss_dssp GGTTTCCCHHHHHCTTCCEE
T ss_pred ccCCccCcHHHHHcCccceE
Confidence 578899 999999999974
No 24
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=94.10 E-value=0.0077 Score=38.42 Aligned_cols=20 Identities=15% Similarity=0.022 Sum_probs=16.9
Q ss_pred eeecccCceecccCCccccc
Q psy3842 75 FLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~ 94 (139)
..|+.||.|+.+||++|+..
T Consensus 81 ~~C~~Cg~C~~~CP~~Ai~~ 100 (103)
T 1xer_A 81 QACIFCMACVNVCPVAAIDV 100 (103)
T ss_dssp GGCCCCCHHHHHCTTCCEEE
T ss_pred ccccChhhHHHhccccceEe
Confidence 46889999999999999863
No 25
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=94.09 E-value=0.0043 Score=36.12 Aligned_cols=21 Identities=14% Similarity=-0.072 Sum_probs=17.7
Q ss_pred eeecccCceecccCCcccccc
Q psy3842 75 FLSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~~ 95 (139)
..|..||.|+.+||++|+...
T Consensus 42 ~~C~~C~~C~~~CP~~Ai~~~ 62 (64)
T 1dax_A 42 ASQEEVEEAMDTCPVQCIHWE 62 (64)
T ss_dssp SCHHHHHHHHHHSSSCCEECC
T ss_pred cchhHHHHHHHhCCHhhEeee
Confidence 457889999999999998643
No 26
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=94.06 E-value=0.018 Score=36.68 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=17.2
Q ss_pred eecccCceecccCCcccccc
Q psy3842 76 LSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~ 95 (139)
.|+.||.|+.+||++++...
T Consensus 44 ~C~~Cg~C~~~CP~~ai~~~ 63 (103)
T 1xer_A 44 LCIADGSCINACPVNVFQWY 63 (103)
T ss_dssp TCCCCCHHHHHCTTCCCEEE
T ss_pred hCCChhhHHHHcCccCeecc
Confidence 58899999999999997643
No 27
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=93.86 E-value=0.016 Score=40.60 Aligned_cols=21 Identities=14% Similarity=-0.078 Sum_probs=18.0
Q ss_pred ceeecccCceecccCCccccc
Q psy3842 74 LFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~ 94 (139)
...|+.||.|+.+||++|+..
T Consensus 50 ~~~Ci~C~~C~~~CP~~ai~~ 70 (182)
T 3i9v_9 50 LEKCIGCSLCAAACPAYAIYV 70 (182)
T ss_dssp CBSCCCCCHHHHHCTTCCEEE
T ss_pred CccCcccccchhhCCcccEEe
Confidence 457999999999999999753
No 28
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=93.77 E-value=0.011 Score=35.80 Aligned_cols=21 Identities=14% Similarity=-0.009 Sum_probs=17.9
Q ss_pred eeecccCceecccCCcccccc
Q psy3842 75 FLSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~~ 95 (139)
..|+.||.|+.+||++|+...
T Consensus 37 ~~C~~Cg~C~~~CP~~ai~~~ 57 (77)
T 1bc6_A 37 DVCIDCGACEAVCPVSAIYHE 57 (77)
T ss_dssp TTCCSCCSHHHHSGGGSSEET
T ss_pred ccCcCccCCHhhcCccceEec
Confidence 458899999999999998743
No 29
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=93.76 E-value=0.0066 Score=34.53 Aligned_cols=21 Identities=10% Similarity=0.029 Sum_probs=17.7
Q ss_pred ceeecccCceecccCCccccc
Q psy3842 74 LFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~ 94 (139)
...|..||.|+.+||++|+..
T Consensus 38 ~~~c~~C~~C~~~CP~~Ai~~ 58 (60)
T 1rof_A 38 ETDLPCAKDAADSCPTGAISV 58 (60)
T ss_dssp SCCSTTHHHHHHHCTTCCEEC
T ss_pred hhhHHHHHHHHHhCCHhHEEE
Confidence 446788999999999999864
No 30
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=93.61 E-value=0.018 Score=36.88 Aligned_cols=21 Identities=14% Similarity=-0.083 Sum_probs=18.0
Q ss_pred eeecccCceecccCCcccccc
Q psy3842 75 FLSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~~ 95 (139)
..|+.||.|+.+||++|+...
T Consensus 37 ~~C~~Cg~C~~~CP~~Ai~~~ 57 (105)
T 2v2k_A 37 DECVDCGACEPVCPVEAIYYE 57 (105)
T ss_dssp TTCCCCCCSGGGCTTCCEEEG
T ss_pred CcCcchhhHHHhCCccCEEec
Confidence 458899999999999998654
No 31
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=93.31 E-value=0.021 Score=36.55 Aligned_cols=19 Identities=5% Similarity=-0.286 Sum_probs=15.9
Q ss_pred eeccc--CceecccCCccccc
Q psy3842 76 LSELS--GKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~--g~~~~~CPtgal~~ 94 (139)
.|..| |.|+.+||++|+..
T Consensus 7 ~C~~C~c~~C~~~CP~~ai~~ 27 (105)
T 2v2k_A 7 PCVDVKDKACIEECPVDCIYE 27 (105)
T ss_dssp GGTTTCCCHHHHHCTTCCEEE
T ss_pred cCCCCCcChhhhhcCccccCc
Confidence 46766 99999999999864
No 32
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=93.10 E-value=0.015 Score=40.67 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=18.2
Q ss_pred ceeecccCceecccCCccccc
Q psy3842 74 LFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~ 94 (139)
+..|+.||.|+.+||++|+..
T Consensus 95 ~~~C~~C~~C~~~CP~~Ai~~ 115 (182)
T 3i9v_9 95 MLRCIFCGLCEEACPTGAIVL 115 (182)
T ss_dssp TTTCCCCCHHHHHCSSSCEEE
T ss_pred CCcCcChhChhhhCCccceEe
Confidence 446999999999999999864
No 33
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=92.52 E-value=0.01 Score=34.32 Aligned_cols=19 Identities=5% Similarity=0.085 Sum_probs=16.1
Q ss_pred ecccCceecccCCcccccc
Q psy3842 77 SELSGKRESTCAPAREGVM 95 (139)
Q Consensus 77 ~~~~g~~~~~CPtgal~~~ 95 (139)
+..||.|+++||++|+...
T Consensus 46 c~~c~~C~~~CP~~Ai~~~ 64 (66)
T 1sj1_A 46 YNCAKEAMEACPVSAITIE 64 (66)
T ss_dssp HHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHhhCCHhhEEEe
Confidence 5678999999999998643
No 34
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=92.34 E-value=0.012 Score=35.95 Aligned_cols=21 Identities=14% Similarity=0.067 Sum_probs=17.6
Q ss_pred eecccCceecccCCcccccce
Q psy3842 76 LSELSGKRESTCAPAREGVME 96 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~e 96 (139)
.|..||.|+.+||++|+....
T Consensus 50 ~c~~C~~C~~~CP~~AI~~~~ 70 (81)
T 1iqz_A 50 LIDDMMDAFEGCPTDSIKVAD 70 (81)
T ss_dssp GHHHHHHHHHHCTTCCEEEES
T ss_pred HHHHHHHHHHhCCHhHEEEec
Confidence 577899999999999987543
No 35
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=91.99 E-value=0.03 Score=34.03 Aligned_cols=22 Identities=5% Similarity=-0.216 Sum_probs=18.1
Q ss_pred ceeecccC------ceecccCCcccccc
Q psy3842 74 LFLSELSG------KRESTCAPAREGVM 95 (139)
Q Consensus 74 ~~~~~~~g------~~~~~CPtgal~~~ 95 (139)
...|+.|| .|+.+||++|+...
T Consensus 34 ~~~C~~C~~~~~~~~C~~~CP~~Ai~~~ 61 (80)
T 1rgv_A 34 PTKCSECVGAFDEPQCRLVCPADCIPDN 61 (80)
T ss_dssp TTTCCTTTTTCSSCHHHHHCSSCCCCBC
T ss_pred chhCcCCCCcCCccHHHHhcCcccEEec
Confidence 34588898 99999999998754
No 36
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=91.58 E-value=0.029 Score=38.81 Aligned_cols=21 Identities=10% Similarity=-0.110 Sum_probs=17.8
Q ss_pred ceeecccCceecccCCccccc
Q psy3842 74 LFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~ 94 (139)
...|+.||.|+.+||++|+..
T Consensus 44 ~~~C~~Cg~Cv~~CP~~AI~~ 64 (150)
T 1jnr_B 44 PDMCWECYSCVKMCPQGAIDV 64 (150)
T ss_dssp GGGCCCCCHHHHHCTTCCEEE
T ss_pred cccCcCHhHHHHhCCccceEe
Confidence 346899999999999999853
No 37
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=91.52 E-value=0.035 Score=33.88 Aligned_cols=21 Identities=10% Similarity=-0.028 Sum_probs=17.3
Q ss_pred eeecccC------ceecccCCcccccc
Q psy3842 75 FLSELSG------KRESTCAPAREGVM 95 (139)
Q Consensus 75 ~~~~~~g------~~~~~CPtgal~~~ 95 (139)
..|+.|| .|+.+||++|+...
T Consensus 35 ~~C~~C~~~~~~~~C~~~CP~~Ai~~~ 61 (82)
T 2fgo_A 35 NLCTECVGHYDEPQCQQVCPVDCIPLD 61 (82)
T ss_dssp TTCCTTTTTCSSCHHHHHCTTCCCCBC
T ss_pred hhCccCCCcCCCCHhHhhCCcccEEcc
Confidence 3577888 99999999998753
No 38
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=90.96 E-value=0.035 Score=33.98 Aligned_cols=21 Identities=10% Similarity=-0.156 Sum_probs=17.7
Q ss_pred eeecccC------ceecccCCcccccc
Q psy3842 75 FLSELSG------KRESTCAPAREGVM 95 (139)
Q Consensus 75 ~~~~~~g------~~~~~CPtgal~~~ 95 (139)
..|..|| .|+.+||++|+...
T Consensus 35 ~~C~~C~~~~~~~~C~~~CP~~Ai~~~ 61 (82)
T 3eun_A 35 SLCTECVGHYETSQCVEVCPVDAIIKD 61 (82)
T ss_dssp GGCCTTTTTCSSCHHHHHCTTCCEEEC
T ss_pred hhcCCCCCCCCccHHHHhCCccceEEc
Confidence 4588999 99999999998654
No 39
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=90.77 E-value=0.041 Score=38.70 Aligned_cols=21 Identities=5% Similarity=-0.247 Sum_probs=17.9
Q ss_pred ceeecccCceecccCCccccc
Q psy3842 74 LFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~ 94 (139)
...|+.||.|+.+||++|+..
T Consensus 43 ~~~C~~Cg~Cv~~CP~~Ai~~ 63 (166)
T 3gyx_B 43 PEACWECYSCIKICPQGAITA 63 (166)
T ss_dssp GGGCCCCCHHHHHCSSCCEEE
T ss_pred cccCcccChHhHhCCccceEE
Confidence 346999999999999999853
No 40
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=90.12 E-value=0.074 Score=42.73 Aligned_cols=21 Identities=10% Similarity=-0.024 Sum_probs=18.6
Q ss_pred ceeecccCceecccCCccccc
Q psy3842 74 LFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~ 94 (139)
...|+.||.|+.+||++|+..
T Consensus 63 ~~~C~~Cg~C~~~CP~~Ai~~ 83 (421)
T 1hfe_L 63 IEACINCGQCLTHCPENAIYE 83 (421)
T ss_dssp GGGCCCCCTTGGGCTTCCEEE
T ss_pred hhhCCchhhHHHhhCcCCccc
Confidence 446999999999999999876
No 41
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=89.83 E-value=0.093 Score=42.15 Aligned_cols=20 Identities=10% Similarity=-0.202 Sum_probs=17.5
Q ss_pred eeecccCceecccCCccccc
Q psy3842 75 FLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal~~ 94 (139)
..|..||.|+.+||++|+..
T Consensus 33 ~kCi~Cg~C~~~CP~~ai~~ 52 (421)
T 1hfe_L 33 AKCIGCDTCSQYCPTAAIFG 52 (421)
T ss_dssp TTCCCCCHHHHHCTTCCCBC
T ss_pred ccCCCccHHHHhcCcCceec
Confidence 36899999999999999864
No 42
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=88.68 E-value=0.07 Score=32.77 Aligned_cols=20 Identities=5% Similarity=-0.195 Sum_probs=17.0
Q ss_pred eeecccC------ceecccCC-ccccc
Q psy3842 75 FLSELSG------KRESTCAP-AREGV 94 (139)
Q Consensus 75 ~~~~~~g------~~~~~CPt-gal~~ 94 (139)
..|+.|| .|+.+||+ +|+..
T Consensus 35 ~~C~~C~~~~~~~~C~~~CP~~~Ai~~ 61 (85)
T 2zvs_A 35 DKCTECVGHYETPTCQKVCPIPNTIVK 61 (85)
T ss_dssp GGCCTTTTTCSSCHHHHHCSSCCEEEC
T ss_pred hhccCCCCcCCccHhhHhCcCCCCEEe
Confidence 4578888 99999999 99864
No 43
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=88.68 E-value=0.15 Score=45.21 Aligned_cols=80 Identities=10% Similarity=-0.063 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCcC---------CCCcchhHHHHHHhCCCCccccccc-cCCCccccccccceeeccc
Q psy3842 11 EMTRRAREGVMEFLLVNHPLDCPICD---------QGGECDLQDQSMAFGSDRSRFTDID-FSGKRWGYLREKLFLSELS 80 (139)
Q Consensus 11 ~~v~~~r~~~lelll~~h~~~C~~C~---------~~g~C~Lq~l~~~~g~~~~r~~~~~-~~~~r~~t~~~~~~~~~~~ 80 (139)
....+.|+.+++.+...|...|..|. +.+...++++. |.......... ..........-....|+.|
T Consensus 880 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---g~~~~~~~~~~~~~~~~~~~~~id~~~C~~C 956 (1025)
T 1gte_A 880 GPYLEQRKKIIAEEKMRLKEQNAAFPPLERKPFIPKKPIPAIKDVI---GKALQYLGTFGELSNIEQVVAVIDEEMCINC 956 (1025)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC------CCCCCCCSSCCCCHHHHT---TTTGGGBCCGGGSCSSSCEEEEECTTTCCCC
T ss_pred HHHHHHHHHHHHHHHhccccccccccCCCccccccccCcchHHHHh---cccccccCccccccccccceEEEEcccCccc
Confidence 45678889999999998888776664 23445555543 32111111100 0000000001122357788
Q ss_pred CceecccCC---cccc
Q psy3842 81 GKRESTCAP---AREG 93 (139)
Q Consensus 81 g~~~~~CPt---gal~ 93 (139)
|.|+.+||+ +|+.
T Consensus 957 g~C~~~CP~~~~~ai~ 972 (1025)
T 1gte_A 957 GKCYMTCNDSGYQAIQ 972 (1025)
T ss_dssp CHHHHHHHHHSCSCEE
T ss_pred CHHHHhcCccccCCEE
Confidence 888888886 6553
No 44
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=88.15 E-value=0.19 Score=36.13 Aligned_cols=16 Identities=6% Similarity=0.052 Sum_probs=7.8
Q ss_pred ecccC--ceecccCCccc
Q psy3842 77 SELSG--KRESTCAPARE 92 (139)
Q Consensus 77 ~~~~g--~~~~~CPtgal 92 (139)
|..|+ .|+.+||++|+
T Consensus 58 C~~C~~p~C~~~CP~gAi 75 (195)
T 2vpz_B 58 CLHCENPPCVPVCPTGAS 75 (195)
T ss_dssp CCCCSSCTTTTTCSSSCE
T ss_pred CcCccCcHHHHhcCCCce
Confidence 44444 35555555554
No 45
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=87.34 E-value=0.14 Score=35.25 Aligned_cols=19 Identities=11% Similarity=0.018 Sum_probs=16.5
Q ss_pred eecccC-----ceecccCCccccc
Q psy3842 76 LSELSG-----KRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g-----~~~~~CPtgal~~ 94 (139)
.|..|| .|+.+||++|+..
T Consensus 9 ~C~~C~~~~~~~C~~~CP~~ai~~ 32 (150)
T 1jnr_B 9 KCDGCKALERTACEYICPNDLMTL 32 (150)
T ss_dssp TCCSCCSSSSCHHHHHCTTSCEEE
T ss_pred cCCCCCCcccccchhhcCccCeEE
Confidence 478999 9999999999754
No 46
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=87.28 E-value=0.11 Score=38.24 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=18.3
Q ss_pred cceeecccCceecccCCcccc
Q psy3842 73 KLFLSELSGKRESTCAPAREG 93 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal~ 93 (139)
....|+.||+|+.+||+++..
T Consensus 202 ~~~~C~~Cg~C~~vCP~gi~~ 222 (238)
T 2wdq_B 202 SVFRCHSIMNCVSVCPKGLNP 222 (238)
T ss_dssp TTTTCCCCCHHHHHCTTCCCH
T ss_pred CCCcCcccchhhhhcCCCCCH
Confidence 456899999999999999864
No 47
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=87.18 E-value=0.16 Score=35.52 Aligned_cols=19 Identities=5% Similarity=-0.139 Sum_probs=16.4
Q ss_pred eecccC-----ceecccCCccccc
Q psy3842 76 LSELSG-----KRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g-----~~~~~CPtgal~~ 94 (139)
.|..|| .|+.+||++|+..
T Consensus 8 ~C~gC~~c~~~~C~~~CP~~ai~~ 31 (166)
T 3gyx_B 8 KCDGCKGGEKTACMYICPNDLMIL 31 (166)
T ss_dssp TCCCCCSSSCCHHHHHCTTSCEEE
T ss_pred hcCCCCCCCcchhHHhCCccccEE
Confidence 478899 9999999999754
No 48
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=86.20 E-value=0.13 Score=40.45 Aligned_cols=19 Identities=5% Similarity=-0.139 Sum_probs=12.3
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|..||.|+.+||++|+..
T Consensus 183 kCigCg~Cv~aCP~~Ai~~ 201 (352)
T 2ivf_B 183 RCKGHRHCVEACPYKAIYF 201 (352)
T ss_dssp TCCCCCHHHHHCTTCCEEE
T ss_pred hcCCchHHHhhcCccceec
Confidence 4566777777777776543
No 49
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=85.60 E-value=0.16 Score=36.46 Aligned_cols=19 Identities=11% Similarity=0.058 Sum_probs=15.2
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|+.||.|+.+||++|+..
T Consensus 89 ~CigC~~C~~~CP~~Ai~~ 107 (195)
T 2vpz_B 89 KCIACGACIAACPYDARYL 107 (195)
T ss_dssp TCCCCCHHHHHCTTCCCEE
T ss_pred CCCCcChhHhhCCCCCeEE
Confidence 5778888999999888754
No 50
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=85.24 E-value=0.2 Score=40.38 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=17.6
Q ss_pred cCceecccCCcccccceeeeccccccCCCCC
Q psy3842 80 SGKRESTCAPAREGVMEFLLVNHPLDCPICD 110 (139)
Q Consensus 80 ~g~~~~~CPtgal~~~e~~l~~~~~~C~~C~ 110 (139)
|+.|+++|||+|+....-.+.-....|..|+
T Consensus 260 ~~~cv~~CPt~Ai~~~~~~~~id~~~Ci~Cg 290 (418)
T 3mm5_A 260 ENEVVKLCPTGAIKWDGKELTIDNRECVRCM 290 (418)
T ss_dssp HHHTGGGCTTCCEEECSSCEEECTTTCCCCC
T ss_pred CccccccCCccccccCCceeEEChhhcCccC
Confidence 5788889999887643222222233455443
No 51
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=84.07 E-value=0.19 Score=39.59 Aligned_cols=18 Identities=11% Similarity=0.004 Sum_probs=16.1
Q ss_pred eecccCceecccCCcccc
Q psy3842 76 LSELSGKRESTCAPAREG 93 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~ 93 (139)
.|..||.|+.+||++|+.
T Consensus 240 ~C~~Cg~C~~~CP~~Ai~ 257 (366)
T 3mm5_B 240 KCMYCGNCYTMCPGMPLF 257 (366)
T ss_dssp GCCCCCHHHHHCTTCCCC
T ss_pred hCCCcchHHHhCCHhhcc
Confidence 578999999999999874
No 52
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=83.64 E-value=0.2 Score=39.78 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=16.1
Q ss_pred eecccCceecccCCcccc
Q psy3842 76 LSELSGKRESTCAPAREG 93 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~ 93 (139)
.|..||.|+.+||++|+.
T Consensus 257 ~Ci~Cg~C~~~CP~~Ai~ 274 (386)
T 3or1_B 257 RCMYCGNCYTMCPALPLS 274 (386)
T ss_dssp TCCCCCHHHHHCTTCCCC
T ss_pred cCCccccHHHhCcHhhCc
Confidence 578999999999999875
No 53
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=82.74 E-value=0.22 Score=45.23 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=18.1
Q ss_pred ceeecccCceecccCC--ccccc
Q psy3842 74 LFLSELSGKRESTCAP--AREGV 94 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPt--gal~~ 94 (139)
...|+.||.|+.+||+ +|+..
T Consensus 741 ~~~C~gCG~Cv~vCP~~~~AI~~ 763 (1231)
T 2c42_A 741 TLDCMGCGNCADICPPKEKALVM 763 (1231)
T ss_dssp TTTCCCCCHHHHHCSSSSCSEEE
T ss_pred hhhCCChhHHHhhCCCCccCeEE
Confidence 3479999999999999 99854
No 54
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=82.66 E-value=0.39 Score=36.40 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=19.7
Q ss_pred eecccCceecccCCcccccceeeeccccccCCCC
Q psy3842 76 LSELSGKRESTCAPAREGVMEFLLVNHPLDCPIC 109 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~e~~l~~~~~~C~~C 109 (139)
.|..||.|+.+||++|+...+- ......|..|
T Consensus 98 ~CigC~~C~~~CP~~Ai~~~~~--~~~~~kC~~C 129 (274)
T 1ti6_B 98 KAKGKKELLDTCPYGVMYWNEE--ENVAQKCTMC 129 (274)
T ss_dssp TTTTCGGGGGGCSSCCCEEETT--TTEEECCCTT
T ss_pred hccchHHHHhhCccCCeEEEcc--cCccccCCCc
Confidence 4677888888888888753221 1123456666
No 55
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=81.80 E-value=0.23 Score=41.02 Aligned_cols=19 Identities=5% Similarity=-0.204 Sum_probs=14.5
Q ss_pred eecccCceecccCCccccc
Q psy3842 76 LSELSGKRESTCAPAREGV 94 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~ 94 (139)
.|..||.|+.+||++|+..
T Consensus 216 kCigCg~Cv~~CP~~AI~~ 234 (512)
T 1q16_B 216 KCRGWRMCITGCPYKKIYF 234 (512)
T ss_dssp TCCCCCCHHHHCTTCCEEE
T ss_pred HCCCchHHHhhCCccceec
Confidence 4778888888888888753
No 56
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=80.51 E-value=0.43 Score=37.57 Aligned_cols=20 Identities=5% Similarity=-0.041 Sum_probs=17.1
Q ss_pred eeecccC--ceecccCCccccc
Q psy3842 75 FLSELSG--KRESTCAPAREGV 94 (139)
Q Consensus 75 ~~~~~~g--~~~~~CPtgal~~ 94 (139)
..|..|+ .|+.+||++|+..
T Consensus 149 ~~C~~C~~~~Cv~~CP~gAi~~ 170 (352)
T 2ivf_B 149 RMCNHCTNPACLAACPTGAIYK 170 (352)
T ss_dssp ECCCCCSSCHHHHHCTTCCEEE
T ss_pred CCCcCcCCccccccCCCCceee
Confidence 3688999 8999999999853
No 57
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=79.77 E-value=0.38 Score=36.43 Aligned_cols=24 Identities=4% Similarity=0.047 Sum_probs=19.7
Q ss_pred cceeeccc----------C---ceecccCCcccccce
Q psy3842 73 KLFLSELS----------G---KRESTCAPAREGVME 96 (139)
Q Consensus 73 ~~~~~~~~----------g---~~~~~CPtgal~~~e 96 (139)
.+..|++| | .|+.+||++|+....
T Consensus 122 ~~~kC~~C~~r~~~~~~~G~~P~Cv~~CP~~Ai~~~~ 158 (274)
T 1ti6_B 122 VAQKCTMCAHLLDDESWAPKMPRCAHNCGSFVYEFLK 158 (274)
T ss_dssp EEECCCTTHHHHTCTTCTTCSCHHHHHCSSCCEEEEE
T ss_pred ccccCCCchhhhhhhccCCCCcchhhhCCcCceEEcC
Confidence 35578999 8 999999999987543
No 58
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=78.30 E-value=0.42 Score=37.60 Aligned_cols=14 Identities=7% Similarity=0.102 Sum_probs=12.7
Q ss_pred CceecccCCccccc
Q psy3842 81 GKRESTCAPAREGV 94 (139)
Q Consensus 81 g~~~~~CPtgal~~ 94 (139)
+.|+++|||+|+..
T Consensus 214 ~~Cv~~CP~~AI~~ 227 (366)
T 3mm5_B 214 PSTVAACPTGALKP 227 (366)
T ss_dssp HHHHHTCTTCCEEE
T ss_pred cchhccCCccceEe
Confidence 89999999999864
No 59
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=76.94 E-value=0.51 Score=35.97 Aligned_cols=16 Identities=13% Similarity=-0.049 Sum_probs=8.0
Q ss_pred ecccCceecccCCccc
Q psy3842 77 SELSGKRESTCAPARE 92 (139)
Q Consensus 77 ~~~~g~~~~~CPtgal 92 (139)
|..||.|+.+||++++
T Consensus 133 CigCg~C~~~CP~~ai 148 (294)
T 1kqf_B 133 CIGCGYCIAGCPFNIP 148 (294)
T ss_dssp CCCCCHHHHHCTTCCC
T ss_pred CCCcchhhhcCCCCCc
Confidence 4445555555555544
No 60
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=76.57 E-value=0.45 Score=35.30 Aligned_cols=20 Identities=15% Similarity=0.203 Sum_probs=17.5
Q ss_pred cceeecccCceecccCCccc
Q psy3842 73 KLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal 92 (139)
+...|+.||+|..+||++.-
T Consensus 211 ~~~~C~~Cg~C~~~CP~~i~ 230 (252)
T 2h88_B 211 SLYRCHTIMNCTRTCPKGLN 230 (252)
T ss_dssp TTTTCCCCCHHHHHCTTCCC
T ss_pred CCCcCccccchhhhcCCCCC
Confidence 55689999999999999964
No 61
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=76.28 E-value=0.5 Score=34.34 Aligned_cols=21 Identities=10% Similarity=0.311 Sum_probs=14.9
Q ss_pred ceeeccc------C---ceecccCCccccc
Q psy3842 74 LFLSELS------G---KRESTCAPAREGV 94 (139)
Q Consensus 74 ~~~~~~~------g---~~~~~CPtgal~~ 94 (139)
+..|+.| | .|+.+||++|+..
T Consensus 134 ~~kC~~C~~~~~~G~~p~Cv~~CP~~Ai~~ 163 (214)
T 1h0h_B 134 MAKCDMCIDRITNGLRPACVTSCPTGAMNF 163 (214)
T ss_dssp EECCCTTHHHHTTTCCCHHHHHCSSSCEEE
T ss_pred cCcCCCCcchhhcCCChhHHHhcCcccEEE
Confidence 3457777 5 7888888888754
No 62
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=76.27 E-value=0.71 Score=35.18 Aligned_cols=20 Identities=5% Similarity=-0.253 Sum_probs=16.7
Q ss_pred eeecccC--ceecccCC-ccccc
Q psy3842 75 FLSELSG--KRESTCAP-AREGV 94 (139)
Q Consensus 75 ~~~~~~g--~~~~~CPt-gal~~ 94 (139)
..|..|+ .|+.+||+ ||+..
T Consensus 98 ~~C~~C~~~~C~~~CP~~gAi~~ 120 (294)
T 1kqf_B 98 DGCMHCEDPGCLKACPSAGAIIQ 120 (294)
T ss_dssp ESCCCBSSCHHHHHCCSTTSEEE
T ss_pred ccCCCcCChhhhhhCCccCcccc
Confidence 3578999 79999999 99853
No 63
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=75.84 E-value=0.52 Score=34.57 Aligned_cols=21 Identities=10% Similarity=0.047 Sum_probs=18.0
Q ss_pred ccceeecccCceecccCCccc
Q psy3842 72 EKLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 72 ~~~~~~~~~g~~~~~CPtgal 92 (139)
.....|+.||+|..+||++..
T Consensus 203 ~~~~~C~~Cg~C~~vCP~~i~ 223 (241)
T 2bs2_B 203 DGVFGCMTLLACHDVCPKNLP 223 (241)
T ss_dssp TTGGGCCCCCHHHHHCTTCCC
T ss_pred cCcccCcccChhhHhcCCCCC
Confidence 356689999999999999964
No 64
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=75.61 E-value=0.42 Score=33.58 Aligned_cols=80 Identities=10% Similarity=0.082 Sum_probs=47.9
Q ss_pred CCCEEEcCCHHHHHHH-HHHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCC-CccccccccCCCcc-ccccccceeec
Q psy3842 2 KGWRVKTNSEMTRRAR-EGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSD-RSRFTDIDFSGKRW-GYLREKLFLSE 78 (139)
Q Consensus 2 ~Gm~V~T~s~~v~~~r-~~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~-~~r~~~~~~~~~r~-~t~~~~~~~~~ 78 (139)
+||+|.|-.+.....+ ..+.+.++.+|...|. .|....+...+++- +.+.... ++. ..+..+..-|+
T Consensus 76 ~G~~v~Tiegl~~~~~~~~~q~a~~~~~~~qCG------~C~pg~i~~a~~ll~~~~~p~~----~~i~~~l~gnlcRCt 145 (168)
T 1t3q_A 76 EGCSIETVEGLSQGEKLNALQDSFRRHHALQCG------FCTAGMLATARSILAENPAPSR----DEVREVMSGNLCRCT 145 (168)
T ss_dssp TTCEEECGGGTCCSSSCCHHHHHHHHTTCCSSC------SSHHHHHHHHHHHHHHCSSCCH----HHHHHHGGGSCCSSS
T ss_pred CCCeEEEEcCCCCccccCHHHHHHHHhCCCcCC------CchHHHHHHHHHHHhcCCCCCH----HHHHHHHcCCcccCC
Confidence 5999999877664333 5677778888998884 55556555454432 1111110 000 01223566799
Q ss_pred ccCceecccCCcc
Q psy3842 79 LSGKRESTCAPAR 91 (139)
Q Consensus 79 ~~g~~~~~CPtga 91 (139)
.+++|+++|-..+
T Consensus 146 ~y~~~v~A~~~~~ 158 (168)
T 1t3q_A 146 GYETIIDAITDPA 158 (168)
T ss_dssp CSHHHHHHHTCHH
T ss_pred CchHHHHHHHHHH
Confidence 9999999775443
No 65
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=74.87 E-value=0.47 Score=34.44 Aligned_cols=18 Identities=11% Similarity=-0.036 Sum_probs=11.6
Q ss_pred eec--ccCceecccCCcccc
Q psy3842 76 LSE--LSGKRESTCAPAREG 93 (139)
Q Consensus 76 ~~~--~~g~~~~~CPtgal~ 93 (139)
.|. .||.|+.+||++|+.
T Consensus 107 ~C~~~~C~~C~~~CP~~Ai~ 126 (214)
T 1h0h_B 107 TKDLEDYESVISACPYDVPR 126 (214)
T ss_dssp GGGCSCHHHHHHHCTTCCCE
T ss_pred HCccccccHHHHhcCCCCeE
Confidence 355 666777777776654
No 66
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=74.11 E-value=4.2 Score=24.60 Aligned_cols=34 Identities=18% Similarity=0.455 Sum_probs=27.3
Q ss_pred HHHhCCCCCCCcCCCCcchhHHHHHHhCCCCccc
Q psy3842 24 LLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 57 (139)
Q Consensus 24 ll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~ 57 (139)
+|.++..+|..|..++...|.+.+...|++...|
T Consensus 22 vf~~~G~~C~gC~~a~~~tLeeA~~~hgiD~d~l 55 (76)
T 2k53_A 22 IFINNGMHCLGCPSSMGESIEDACAVHGIDADKL 55 (76)
T ss_dssp HHHHTTCCCCSSCCCCCSBHHHHHHHHTCCHHHH
T ss_pred HHHHcCCCCCCCCccccccHHHHHHHcCCCHHHH
Confidence 4456677899999888889999999999976544
No 67
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=73.69 E-value=1 Score=37.23 Aligned_cols=20 Identities=20% Similarity=0.021 Sum_probs=16.7
Q ss_pred eeecccC--ceecccCCccccc
Q psy3842 75 FLSELSG--KRESTCAPAREGV 94 (139)
Q Consensus 75 ~~~~~~g--~~~~~CPtgal~~ 94 (139)
..|..|+ .|+.+||++|+..
T Consensus 182 ~~C~~C~~~~Cv~aCP~gAI~~ 203 (512)
T 1q16_B 182 RLCEHCLNPACVATCPSGAIYK 203 (512)
T ss_dssp ECCCCCSSCHHHHTCTTCCEEE
T ss_pred ccCcCCCCchhhhhCCcCcEEe
Confidence 3678899 5999999999864
No 68
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=72.52 E-value=0.83 Score=36.24 Aligned_cols=15 Identities=13% Similarity=0.060 Sum_probs=13.1
Q ss_pred cCceecccCCccccc
Q psy3842 80 SGKRESTCAPAREGV 94 (139)
Q Consensus 80 ~g~~~~~CPtgal~~ 94 (139)
|+.|+++|||+|+..
T Consensus 224 ~~~cv~~CPt~AI~~ 238 (386)
T 3or1_B 224 IPLAVAACPTAAVKP 238 (386)
T ss_dssp HHHHHHHCTTCCEEE
T ss_pred chhhhhhCchhhccc
Confidence 389999999999865
No 69
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=72.43 E-value=0.89 Score=36.83 Aligned_cols=14 Identities=7% Similarity=0.071 Sum_probs=9.9
Q ss_pred CceecccCCccccc
Q psy3842 81 GKRESTCAPAREGV 94 (139)
Q Consensus 81 g~~~~~CPtgal~~ 94 (139)
+.|+++|||+|+..
T Consensus 278 ~~vv~~CPt~ai~~ 291 (437)
T 3or1_A 278 AEVVGLCPTGCMTY 291 (437)
T ss_dssp HHTTTTCTTCCEEE
T ss_pred hhhhccCcHHheee
Confidence 46778888887653
No 70
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=71.40 E-value=0.42 Score=35.10 Aligned_cols=18 Identities=11% Similarity=-0.073 Sum_probs=15.9
Q ss_pred eeecccCceecccCCccc
Q psy3842 75 FLSELSGKRESTCAPARE 92 (139)
Q Consensus 75 ~~~~~~g~~~~~CPtgal 92 (139)
..|..||.|+++||++++
T Consensus 149 ~~Ci~Cg~C~~~CP~~~~ 166 (241)
T 2bs2_B 149 DRCIECGCCIAACGTKIM 166 (241)
T ss_dssp HTCCCCCHHHHTCHHHHH
T ss_pred hhhhccCcCcccCCCCcc
Confidence 368899999999999975
No 71
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=70.85 E-value=0.82 Score=40.53 Aligned_cols=22 Identities=9% Similarity=-0.144 Sum_probs=18.8
Q ss_pred eeecccCceecccCC-cccccce
Q psy3842 75 FLSELSGKRESTCAP-AREGVME 96 (139)
Q Consensus 75 ~~~~~~g~~~~~CPt-gal~~~e 96 (139)
..|+.||.|+.+||+ +|+....
T Consensus 984 ~~C~~Cg~C~~~CP~~~Ai~~~~ 1006 (1025)
T 1gte_A 984 DTCTGCTLCLSVCPIIDCIRMVS 1006 (1025)
T ss_dssp TTCCCCCHHHHHCSSTTTEEEEE
T ss_pred ccCCChhHHHhhCCCCCCEEEec
Confidence 468999999999999 9987654
No 72
>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A*
Probab=69.31 E-value=1.1 Score=38.57 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=27.9
Q ss_pred cCCcccccceeeeccccccCCCCCCCCcchhHH
Q psy3842 87 CAPAREGVMEFLLVNHPLDCPICDQGGECDLQD 119 (139)
Q Consensus 87 CPtgal~~~e~~l~~~~~~C~~C~~g~~~eL~~ 119 (139)
||-.++..+.|.+...+++|++|++||...++.
T Consensus 2 ~~~~~~~~~~~~~~~~~t~C~~C~~gC~~~~~~ 34 (825)
T 1g8k_A 2 CPNDRITLPPANAQRTNMTCHFCIVGCGYHVYK 34 (825)
T ss_dssp --CCBCCCCBTTCEEEEEECSSBTTCCEEEEEE
T ss_pred CCCCccccCCCCceEEeeeCCCccCCcCEEEEE
Confidence 667888888888889999999999999999875
No 73
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=64.53 E-value=1.3 Score=35.70 Aligned_cols=18 Identities=6% Similarity=-0.273 Sum_probs=15.8
Q ss_pred eecccCceecccCCcccc
Q psy3842 76 LSELSGKRESTCAPAREG 93 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~ 93 (139)
.|..||.|+.+||++++.
T Consensus 285 ~Ci~Cg~Ci~~CP~~~~~ 302 (418)
T 3mm5_A 285 ECVRCMHCINKMPKALKP 302 (418)
T ss_dssp TCCCCCHHHHHCTTTEEC
T ss_pred hcCccChhHHhCcHhhcc
Confidence 588999999999998764
No 74
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=64.40 E-value=1.2 Score=36.05 Aligned_cols=18 Identities=11% Similarity=-0.258 Sum_probs=15.6
Q ss_pred eecccCceecccCCcccc
Q psy3842 76 LSELSGKRESTCAPAREG 93 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~ 93 (139)
.|+.||.|+.+||++++.
T Consensus 302 ~C~~Cg~Ci~~CP~al~~ 319 (437)
T 3or1_A 302 NCTRCMHCINTMPRALKI 319 (437)
T ss_dssp GCCCCSHHHHHCTTTEEC
T ss_pred cCCchhhhHhhCcHhhcc
Confidence 688999999999997653
No 75
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=63.91 E-value=2 Score=32.67 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=17.5
Q ss_pred cceeecccCceecccCCccc
Q psy3842 73 KLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal 92 (139)
+...|+.||+|..+||.+.-
T Consensus 235 ~l~~C~~Cg~C~~vCP~gI~ 254 (282)
T 3vr8_B 235 SAFKCHTIMNCTKTCPKHLN 254 (282)
T ss_pred CcccChhhCCccccCcCCCC
Confidence 56789999999999999864
No 76
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=63.16 E-value=1.4 Score=38.26 Aligned_cols=21 Identities=10% Similarity=-0.099 Sum_probs=17.9
Q ss_pred ceeecccCceecccCCccccc
Q psy3842 74 LFLSELSGKRESTCAPAREGV 94 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~ 94 (139)
...|+.||.|+.+||+++...
T Consensus 452 ~~~Ci~Cg~C~~vCP~ga~~~ 472 (807)
T 3cf4_A 452 HDTCIGCRRCEQVCKKEIPIL 472 (807)
T ss_dssp HHHCCCCCHHHHHCTTCCCHH
T ss_pred hhhccchhhHHHhCCCCCChH
Confidence 357999999999999999753
No 77
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=61.48 E-value=1.3 Score=32.72 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=16.1
Q ss_pred ceeecccCceecccCCccc
Q psy3842 74 LFLSELSGKRESTCAPARE 92 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal 92 (139)
...|..||.|.++||+.++
T Consensus 155 ~~~Ci~CG~C~~~CP~~~~ 173 (252)
T 2h88_B 155 LYECILCACCSTSCPSYWW 173 (252)
T ss_dssp TTTCCCCCTTGGGCHHHHH
T ss_pred HHhchhhCcchhhCCCCcc
Confidence 3468999999999999863
No 78
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=59.47 E-value=3.3 Score=30.91 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=21.5
Q ss_pred cccCceecccCCcccccce-eeeccccccCCCCC
Q psy3842 78 ELSGKRESTCAPAREGVME-FLLVNHPLDCPICD 110 (139)
Q Consensus 78 ~~~g~~~~~CPtgal~~~e-~~l~~~~~~C~~C~ 110 (139)
..||.|+.+||.|++..-+ ......+..|.+|+
T Consensus 174 ~~C~~C~~~CP~g~I~id~~~~v~~d~~~C~~C~ 207 (265)
T 2pa8_D 174 ANCEKAVNVCPEGVFELKDGKLSVKNELSCTLCE 207 (265)
T ss_dssp SCCTTHHHHCTTCCEEEETTEEEESCGGGCCCCC
T ss_pred hhHHHHHHhCcccCeEecCCeeEEeccccCCCch
Confidence 7899999999999985432 11112334577765
No 79
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=56.23 E-value=2.7 Score=31.92 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=16.7
Q ss_pred cceeecccCceecccCCccc
Q psy3842 73 KLFLSELSGKRESTCAPARE 92 (139)
Q Consensus 73 ~~~~~~~~g~~~~~CPtgal 92 (139)
....|..||.|.++||+...
T Consensus 178 ~~~~CI~CG~C~~aCP~~~~ 197 (282)
T 3vr8_B 178 GLYECILCACCSASCPSYWW 197 (282)
T ss_pred hhhhCcccCcCcccCCceec
Confidence 34579999999999999864
No 80
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=49.57 E-value=4.9 Score=33.16 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=22.2
Q ss_pred cccCceecccCCcccccce---e---eeccccccCCCCC
Q psy3842 78 ELSGKRESTCAPAREGVME---F---LLVNHPLDCPICD 110 (139)
Q Consensus 78 ~~~g~~~~~CPtgal~~~e---~---~l~~~~~~C~~C~ 110 (139)
..||.|+.+||++++...+ - .+.-....|..|+
T Consensus 519 ~~~~~c~~~CPa~~~~~~~~~~~~~~~~~i~~~~Ci~C~ 557 (584)
T 2gmh_A 519 IYDGPEQRFCPAGVYEFVPLEQGDGFRLQINAQNCVHCK 557 (584)
T ss_dssp HHCCTHHHHCTTCCEEEEECSSTTCEEEEECGGGCCCCC
T ss_pred hhcchhhhcCChhhEEEeecCCCCceEEEEeCCCCcCCC
Confidence 6789999999999986522 1 2223344577775
No 81
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=48.85 E-value=3.3 Score=34.22 Aligned_cols=17 Identities=0% Similarity=-0.269 Sum_probs=15.9
Q ss_pred eecccCceecccCCccc
Q psy3842 76 LSELSGKRESTCAPARE 92 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal 92 (139)
.|..||.|..+||++++
T Consensus 552 ~Ci~C~~C~~~cp~~~i 568 (584)
T 2gmh_A 552 NCVHCKTCDIKDPSQNI 568 (584)
T ss_dssp GCCCCCHHHHHCTTCCE
T ss_pred CCcCCCCchhhCCCCCc
Confidence 58899999999999987
No 82
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=47.39 E-value=8 Score=28.05 Aligned_cols=54 Identities=6% Similarity=-0.017 Sum_probs=36.8
Q ss_pred cccCceecccCCcccccceeeeccccccCCCCCCCCcchhHHHHHHhCCCCCCCC
Q psy3842 78 ELSGKRESTCAPAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFT 132 (139)
Q Consensus 78 ~~~g~~~~~CPtgal~~~e~~l~~~~~~C~~C~~g~~~eL~~~~~~~gv~~~rf~ 132 (139)
...|..+.+|=|-+..... .+.-+|..|..|.++..++|+.+..+++.....|.
T Consensus 68 ~v~G~~~~aC~~~~~~~~~-~~~i~~l~~~~~~kdl~~dl~~~~~~~~~~~~~~~ 121 (243)
T 1kf6_B 68 MVNNVPKLACKTFLRDYTD-GMKVEALANFPIERDLVVDMTHFIESLEAIKPYII 121 (243)
T ss_dssp EETTEEEEGGGCBGGGCTT-CEEEECCTTSCEEETTEECCHHHHHHHHHTCCSCC
T ss_pred EECCEEEeeeeeEHhhCCC-cEEEEecCCCCccceeEEecHHHHHHHHhcCCeec
Confidence 3455556666665543311 13347888999999999999999998887655543
No 83
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=43.60 E-value=5 Score=33.65 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=17.3
Q ss_pred eecccCceecccCCcccccc
Q psy3842 76 LSELSGKRESTCAPAREGVM 95 (139)
Q Consensus 76 ~~~~~g~~~~~CPtgal~~~ 95 (139)
.|..||-|+.-||-+|+...
T Consensus 54 ~c~~~~~~~~~cp~~~i~i~ 73 (608)
T 3j16_B 54 LCIGCGICVKKCPFDAIQII 73 (608)
T ss_dssp TCCCCCHHHHHCSSCCEEEE
T ss_pred hccccccccccCCccceEEe
Confidence 57799999999999998653
No 84
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=37.61 E-value=25 Score=20.13 Aligned_cols=36 Identities=3% Similarity=0.012 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCCCCccc
Q psy3842 12 MTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 57 (139)
Q Consensus 12 ~v~~~r~~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~ 57 (139)
...+.|+.||++|..+.. .-.+.+++..+|+.+.-.
T Consensus 7 ~m~~~~~~IL~~L~~~~~----------~~s~~eLA~~lglsr~tv 42 (67)
T 2heo_A 7 TGDNLEQKILQVLSDDGG----------PVAIFQLVKKCQVPKKTL 42 (67)
T ss_dssp --CHHHHHHHHHHHHHCS----------CEEHHHHHHHHCSCHHHH
T ss_pred cccHHHHHHHHHHHHcCC----------CcCHHHHHHHHCcCHHHH
Confidence 445568889999976522 135789999999986533
No 85
>2b9d_A E7 protein; zinc finger, homodimer, transcription, viral protein; 1.60A {Human papillomavirus type 1A} SCOP: g.91.1.1
Probab=31.70 E-value=44 Score=18.62 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=20.4
Q ss_pred EEEcCCHHHHHHHHHHHHHHHHhCCCCCCCcCCC
Q psy3842 5 RVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQG 38 (139)
Q Consensus 5 ~V~T~s~~v~~~r~~~lelll~~h~~~C~~C~~~ 38 (139)
.|.+..+.++.. =+||+.+=..-||.|.++
T Consensus 21 ~V~at~~~IR~l----qqLLl~~L~lvCp~Ca~~ 50 (52)
T 2b9d_A 21 TVLADHSAIRQL----EEMLLRSLNIVCPLCTLQ 50 (52)
T ss_dssp EEEECHHHHHHH----HHHHHHTCCCCCTTTTTC
T ss_pred EEEeCchhHHHH----HHHhhCCceEECcchhcc
Confidence 456666667654 455666678899999753
No 86
>1uku_A CUTA1, periplasmic divalent cation tolerance protein CUT; copper tolerance, structural genomics, metal binding P; 1.45A {Pyrococcus horikoshii} SCOP: d.58.5.2 PDB: 1umj_A 1v99_A* 1v9b_A 1j2v_A 2e66_A
Probab=27.03 E-value=41 Score=21.35 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=20.8
Q ss_pred CEEEcCCHHHHHHHHHHHHHHHHhCCCCCCC
Q psy3842 4 WRVKTNSEMTRRAREGVMEFLLVNHPLDCPI 34 (139)
Q Consensus 4 m~V~T~s~~v~~~r~~~lelll~~h~~~C~~ 34 (139)
|.|+|.+.+..+ +.+.|...||-+.|-
T Consensus 53 l~iKT~~~~~~~----l~~~i~~~HpYevPe 79 (102)
T 1uku_A 53 AILKTREDLWEE----LKERIKELHPYDVPA 79 (102)
T ss_dssp EEEEECGGGHHH----HHHHHHHHCSSSSCC
T ss_pred EEEEECHHHHHH----HHHHHHHHCCCcCCE
Confidence 678888888776 566677789998873
No 87
>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD polypeptide; RNA polymerase subunit; 1.9A {Saccharomyces cerevisiae} SCOP: c.52.3.1 d.78.1.1 PDB: 1i3q_E 1i50_E 1i6h_E 1k83_E* 1nik_E 1nt9_E 1pqv_E 1r5u_E 1r9s_E* 1r9t_E* 1sfo_E* 1twa_E* 1twc_E* 1twf_E* 1twg_E* 1twh_E* 1wcm_E 1y1v_E 1y1w_E 1y1y_E ...
Probab=24.36 E-value=25 Score=25.64 Aligned_cols=47 Identities=17% Similarity=0.015 Sum_probs=27.4
Q ss_pred CCEEEcCCHHHHHHHHHHHHHHHHhCCCCCCCcCCCCcchhHHHHHHhCC
Q psy3842 3 GWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGS 52 (139)
Q Consensus 3 Gm~V~T~s~~v~~~r~~~lelll~~h~~~C~~C~~~g~C~Lq~l~~~~g~ 52 (139)
||+-...+.++.++||+++|||-++.-.- ..=+ -+=.|+++...||-
T Consensus 2 ~m~~~~e~~rl~r~rrTv~eMl~DRGY~v-~~~e--~~~sl~~F~~~~~~ 48 (215)
T 1dzf_A 2 DQENERNISRLWRAFRTVKEMVKDRGYFI-TQEE--VELPLEDFKAKYCD 48 (215)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHTTBCC-CHHH--HTCCHHHHHHHHBC
T ss_pred CcchHHHHHHHHHHHHHHHHHHhcCCCcc-CHhH--hcCCHHHHHHHHcc
Confidence 45555566799999999999998775431 0000 01135566667764
No 88
>1p1l_A CUTA, periplasmic divalent cation tolerance protein CUT; NYSGXRC, PSI, protein structure initiative; 2.00A {Archaeoglobus fulgidus} SCOP: d.58.5.2
Probab=23.90 E-value=40 Score=21.42 Aligned_cols=26 Identities=31% Similarity=0.253 Sum_probs=20.2
Q ss_pred CEEEcCCHHHHHHHHHHHHHHHHhCCCCCC
Q psy3842 4 WRVKTNSEMTRRAREGVMEFLLVNHPLDCP 33 (139)
Q Consensus 4 m~V~T~s~~v~~~r~~~lelll~~h~~~C~ 33 (139)
|.|+|.+.+..+ +.+.|...||-+.|
T Consensus 54 l~iKT~~~~~~~----l~~~I~~~HpYevP 79 (102)
T 1p1l_A 54 MIVKTRSEKFAE----VRDEVKAMHSYTTP 79 (102)
T ss_dssp EEEEEEGGGHHH----HHHHHHHHCSSSSC
T ss_pred EEEEECHHHHHH----HHHHHHHHCCCcCC
Confidence 567888877776 66667778999887
No 89
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=23.08 E-value=60 Score=19.84 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHH-hCCCCCCCcCC
Q psy3842 15 RAREGVMEFLLV-NHPLDCPICDQ 37 (139)
Q Consensus 15 ~~r~~~lelll~-~h~~~C~~C~~ 37 (139)
..||.+-++..+ ++...||.|.+
T Consensus 12 ~lRk~vk~ie~~q~~~y~Cp~CG~ 35 (83)
T 1vq8_Z 12 VSRRRVAEIESEMNEDHACPNCGE 35 (83)
T ss_dssp HHHHHHHHHHHHHHSCEECSSSCC
T ss_pred HHHHHHHHHHHhccccCcCCCCCC
Confidence 467778777444 46678888864
No 90
>1nza_A CUTA, divalent cation tolerance protein; cellular tolerance, monomer, structural genomics, RIKE structural genomics/proteomics initiative; 1.70A {Thermus thermophilus} SCOP: d.58.5.2 PDB: 1v6h_A
Probab=22.87 E-value=42 Score=21.39 Aligned_cols=26 Identities=27% Similarity=0.338 Sum_probs=20.1
Q ss_pred CEEEcCCHHHHHHHHHHHHHHHHhCCCCCC
Q psy3842 4 WRVKTNSEMTRRAREGVMEFLLVNHPLDCP 33 (139)
Q Consensus 4 m~V~T~s~~v~~~r~~~lelll~~h~~~C~ 33 (139)
|.|+|.+.+..+ +.+.+...||-+.|
T Consensus 55 l~iKT~~~~~~~----l~~~i~~~HpYevP 80 (103)
T 1nza_A 55 LLVKTTTHAFPK----LKERVKALHPYTVP 80 (103)
T ss_dssp EEEEEETTTHHH----HHHHHHHHSSSSSC
T ss_pred EEEEECHHHHHH----HHHHHHHHCCCcCC
Confidence 567888877776 56667778999887
No 91
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=22.62 E-value=75 Score=18.99 Aligned_cols=23 Identities=22% Similarity=0.572 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHh-CCCCCCCcCC
Q psy3842 15 RAREGVMEFLLVN-HPLDCPICDQ 37 (139)
Q Consensus 15 ~~r~~~lelll~~-h~~~C~~C~~ 37 (139)
..||.+-++..+. +...|+.|.+
T Consensus 12 slRK~vkkie~~q~~ky~C~fCgk 35 (73)
T 1ffk_W 12 KIRVRVRDVEIKHKKKYKCPVCGF 35 (73)
T ss_pred hHHHHHHHHHHhcccCccCCCCCC
Confidence 4688888886665 4567888865
No 92
>3ahp_A CUTA1; thermostable protein, electron transport; 2.70A {Shewanella}
Probab=22.34 E-value=44 Score=21.50 Aligned_cols=26 Identities=15% Similarity=0.388 Sum_probs=20.1
Q ss_pred CEEEcCCHHHHHHHHHHHHHHHHhCCCCCC
Q psy3842 4 WRVKTNSEMTRRAREGVMEFLLVNHPLDCP 33 (139)
Q Consensus 4 m~V~T~s~~v~~~r~~~lelll~~h~~~C~ 33 (139)
|.|+|.+.+..+ +.+.|...||-+.|
T Consensus 59 l~iKT~~~~~~~----l~~~I~~~HpYevP 84 (108)
T 3ahp_A 59 MQIKCMTTDYPA----IEQLVITMHPYEVP 84 (108)
T ss_dssp EEEEEEGGGHHH----HHHHHHHHSSSSSC
T ss_pred EEEEECHHHHHH----HHHHHHHHCCCcCC
Confidence 567888877776 66667778999877
No 93
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=22.01 E-value=48 Score=19.52 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=25.3
Q ss_pred HHHhCCCCCCCcCCCCcchhHHHHHHhCCCCccc
Q psy3842 24 LLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 57 (139)
Q Consensus 24 ll~~h~~~C~~C~~~g~C~Lq~l~~~~g~~~~r~ 57 (139)
+|.++..+|..|.....-.|.+.+...|++...+
T Consensus 24 vf~~~G~~c~~C~~a~~~tL~~Aa~~~gid~~~l 57 (73)
T 2k5e_A 24 VLRSYNLGCIGCMGAQNESLEQGANAHGLNVEDI 57 (73)
T ss_dssp HHHHTTGGGGGTTTGGGSBHHHHHHHTTCCHHHH
T ss_pred HHHHcCCCCCCCCccccccHHHHHHHcCCCHHHH
Confidence 4566788999998655667888888888875443
No 94
>1naq_A Periplasmic divalent cation tolerance protein CUTA; copper resistance, structural proteomics in europe, spine, structural genomics; HET: MBO; 1.70A {Escherichia coli} SCOP: d.58.5.2 PDB: 3ah6_A 3aa9_A 3aa8_A 3opk_A
Probab=21.99 E-value=47 Score=21.49 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=20.1
Q ss_pred CEEEcCCHHHHHHHHHHHHHHHHhCCCCCC
Q psy3842 4 WRVKTNSEMTRRAREGVMEFLLVNHPLDCP 33 (139)
Q Consensus 4 m~V~T~s~~v~~~r~~~lelll~~h~~~C~ 33 (139)
|.|+|...+..+ +.+.|...||-+.|
T Consensus 64 l~iKT~~~~~~~----l~~~I~~~HpYevP 89 (112)
T 1naq_A 64 MILKTTVSHQQA----LLECLKSHHPYQTP 89 (112)
T ss_dssp EEEEEEGGGHHH----HHHHHHHHSTTSCC
T ss_pred EEEEECHHHHHH----HHHHHHHHCCCcCC
Confidence 567888877776 56667778999887
No 95
>2zom_A CUTA1, protein CUTA, chloroplast, putative, expressed; trimeric structure, protein stability, unknown function; 3.02A {Oryza sativa subsp}
Probab=21.15 E-value=50 Score=21.41 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=20.6
Q ss_pred CEEEcCCHHHHHHHHHHHHHHHHhCCCCCCC
Q psy3842 4 WRVKTNSEMTRRAREGVMEFLLVNHPLDCPI 34 (139)
Q Consensus 4 m~V~T~s~~v~~~r~~~lelll~~h~~~C~~ 34 (139)
+.|+|...++.+ +.+.|...||-+.|-
T Consensus 63 l~iKT~~~~~~~----l~~~I~~~HpYevPe 89 (113)
T 2zom_A 63 LIIKTRESLLDA----LTEHVKANHEYDVPE 89 (113)
T ss_dssp EEEEEEGGGHHH----HHHHHHHTCSSSSCC
T ss_pred EEEEECHHHHHH----HHHHHHHHCCCcCCE
Confidence 567888877776 667777789998873
No 96
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=20.70 E-value=46 Score=23.36 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=19.1
Q ss_pred ceeecccCceecccCCcccccceeeeccccccCCCCCCCC
Q psy3842 74 LFLSELSGKRESTCAPAREGVMEFLLVNHPLDCPICDQGG 113 (139)
Q Consensus 74 ~~~~~~~g~~~~~CPtgal~~~e~~l~~~~~~C~~C~~g~ 113 (139)
...|..||-..+ |. +.|..||.|+.+.
T Consensus 155 ~~~C~~CG~~~~----g~---------~~p~~CP~C~~~k 181 (191)
T 1lko_A 155 KWRCRNCGYVHE----GT---------GAPELCPACAHPK 181 (191)
T ss_dssp EEEETTTCCEEE----EE---------ECCSBCTTTCCBG
T ss_pred eEEECCCCCEee----CC---------CCCCCCCCCcCCH
Confidence 357888888766 42 4566899998753
No 97
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=20.68 E-value=16 Score=25.49 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=26.2
Q ss_pred CCCEEEcCCHHH--HHHHHHHHHHHHHhCCCCCCCcCCCC
Q psy3842 2 KGWRVKTNSEMT--RRAREGVMEFLLVNHPLDCPICDQGG 39 (139)
Q Consensus 2 ~Gm~V~T~s~~v--~~~r~~~lelll~~h~~~C~~C~~~g 39 (139)
+||+|.|--+-. .....-+-+.++.+|...|..|...-
T Consensus 70 ~G~~V~TiEgL~~~~~~~~pvq~a~~~~~~~QCG~CtpG~ 109 (166)
T 1n62_A 70 NGASITTIEGMAAPDGTLSALQEGFRMMHGLQCGYCTPGM 109 (166)
T ss_dssp TTCEEECGGGSSCTTSCCCHHHHHHHHTTCCSSCSSHHHH
T ss_pred CCceEEEeCCCCCcCCccCHHHHHHHHcCCccCCccchhH
Confidence 689999973322 12334566777788999999998743
No 98
>3gsd_A Divalent-cation tolerance protein CUTA; IDP00456, metal-BIN structural genomics, center for structural genomics of INFE diseases, csgid; HET: EPE; 2.05A {Yersinia pestis CO92} SCOP: d.58.5.2
Probab=20.40 E-value=51 Score=21.74 Aligned_cols=26 Identities=19% Similarity=0.528 Sum_probs=19.9
Q ss_pred CEEEcCCHHHHHHHHHHHHHHHHhCCCCCC
Q psy3842 4 WRVKTNSEMTRRAREGVMEFLLVNHPLDCP 33 (139)
Q Consensus 4 m~V~T~s~~v~~~r~~~lelll~~h~~~C~ 33 (139)
|.|+|.+.+..+ +.+.|...||-+.|
T Consensus 74 l~iKT~~~~~~~----l~~~I~~~HpYevP 99 (122)
T 3gsd_A 74 LLFKSNTDHQQA----LLTYIKQHHPYQTP 99 (122)
T ss_dssp EEEEEEGGGHHH----HHHHHHHSCSSSSC
T ss_pred EEEEEcHHHHHH----HHHHHHHHCCCcCc
Confidence 567888877776 66677778999877
Done!