RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3842
(139 letters)
>gnl|CDD|236387 PRK09130, PRK09130, NADH dehydrogenase subunit G; Validated.
Length = 687
Score = 136 bits (344), Expect = 4e-38
Identities = 39/52 (75%), Positives = 47/52 (90%)
Query: 6 VKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 57
+ TN+ M ++AREGVMEFLL+NHPLDCPICDQGGECDLQDQ+MA+G D SR+
Sbjct: 73 IFTNTPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDTSRY 124
Score = 119 bits (301), Expect = 3e-32
Identities = 36/42 (85%), Positives = 40/42 (95%)
Query: 90 AREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 131
AREGVMEFLL+NHPLDCPICDQGGECDLQDQ+MA+G D SR+
Sbjct: 83 AREGVMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDTSRY 124
>gnl|CDD|233662 TIGR01973, NuoG, NADH-quinone oxidoreductase, chain G. This model
represents the G subunit (one of 14: A->N) of the
NADH-quinone oxidoreductase complex I which generally
couples NADH and ubiquinone oxidation/reduction in
bacteria and mammalian mitochondria while translocating
protons, but may act on NADPH and/or plastoquinone in
cyanobacteria and plant chloroplasts. This model
excludes related subunits from formate dehydrogenase
complexes [Energy metabolism, Electron transport].
Length = 603
Score = 125 bits (317), Expect = 1e-34
Identities = 42/57 (73%), Positives = 50/57 (87%)
Query: 1 MKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 57
G ++ TNSE ++AREGVMEFLL+NHPLDCPICDQGGECDLQDQ++ +GSDRSRF
Sbjct: 65 TDGMKISTNSEKVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAVMYGSDRSRF 121
Score = 107 bits (268), Expect = 6e-28
Identities = 37/42 (88%), Positives = 41/42 (97%)
Query: 90 AREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 131
AREGVMEFLL+NHPLDCPICDQGGECDLQDQ++ +GSDRSRF
Sbjct: 80 AREGVMEFLLINHPLDCPICDQGGECDLQDQAVMYGSDRSRF 121
>gnl|CDD|236386 PRK09129, PRK09129, NADH dehydrogenase subunit G; Validated.
Length = 776
Score = 112 bits (283), Expect = 6e-30
Identities = 34/59 (57%), Positives = 44/59 (74%)
Query: 1 MKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTD 59
G +V T SE +A++ VMEFLL+NHPLDCPICDQGGEC LQD ++ +G SR+T+
Sbjct: 67 TDGMKVFTRSEKALKAQKSVMEFLLINHPLDCPICDQGGECQLQDLAVGYGRSTSRYTE 125
Score = 101 bits (255), Expect = 4e-26
Identities = 29/44 (65%), Positives = 37/44 (84%)
Query: 90 AREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTD 133
A++ VMEFLL+NHPLDCPICDQGGEC LQD ++ +G SR+T+
Sbjct: 82 AQKSVMEFLLINHPLDCPICDQGGECQLQDLAVGYGRSTSRYTE 125
>gnl|CDD|223965 COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75
kD subunit (chain G) [Energy production and conversion].
Length = 693
Score = 102 bits (255), Expect = 3e-26
Identities = 34/56 (60%), Positives = 45/56 (80%)
Query: 3 GWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFT 58
G + TNSE ++AREGVMEFLL+NHPLDCP+CD+GGEC+LQD ++ +G SR+
Sbjct: 69 GMVISTNSEEVKKAREGVMEFLLINHPLDCPVCDKGGECELQDLAVKYGVSHSRYR 124
Score = 89.4 bits (222), Expect = 1e-21
Identities = 29/43 (67%), Positives = 37/43 (86%)
Query: 90 AREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFT 132
AREGVMEFLL+NHPLDCP+CD+GGEC+LQD ++ +G SR+
Sbjct: 82 AREGVMEFLLINHPLDCPVCDKGGECELQDLAVKYGVSHSRYR 124
>gnl|CDD|236118 PRK07860, PRK07860, NADH dehydrogenase subunit G; Validated.
Length = 797
Score = 97.7 bits (244), Expect = 1e-24
Identities = 37/68 (54%), Positives = 47/68 (69%), Gaps = 6/68 (8%)
Query: 1 MKGWRVKT--NSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFT 58
G VKT S + +A+ GVME LL+NHPLDCP+CD+GGEC LQ+Q+M+ G SRFT
Sbjct: 70 TDGMVVKTQLTSPVADKAQHGVMELLLINHPLDCPVCDKGGECPLQNQAMSNGRAESRFT 129
Query: 59 DIDFSGKR 66
D+ KR
Sbjct: 130 DV----KR 133
Score = 91.9 bits (229), Expect = 1e-22
Identities = 30/45 (66%), Positives = 38/45 (84%)
Query: 90 AREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDI 134
A+ GVME LL+NHPLDCP+CD+GGEC LQ+Q+M+ G SRFTD+
Sbjct: 87 AQHGVMELLLINHPLDCPVCDKGGECPLQNQAMSNGRAESRFTDV 131
>gnl|CDD|204520 pfam10588, NADH-G_4Fe-4S_3, NADH-ubiquinone oxidoreductase-G
iron-sulfur binding region.
Length = 41
Score = 72.9 bits (180), Expect = 2e-18
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 17 REGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 57
R+ ++E LL NHPLDCP CD+ G C+LQD + G D SRF
Sbjct: 1 RKTILELLLANHPLDCPTCDKNGNCELQDLAYELGVDESRF 41
Score = 72.9 bits (180), Expect = 2e-18
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 91 REGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 131
R+ ++E LL NHPLDCP CD+ G C+LQD + G D SRF
Sbjct: 1 RKTILELLLANHPLDCPTCDKNGNCELQDLAYELGVDESRF 41
>gnl|CDD|214918 smart00929, NADH-G_4Fe-4S_3, NADH-ubiquinone oxidoreductase-G
iron-sulfur binding region.
Length = 41
Score = 68.8 bits (169), Expect = 7e-17
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 17 REGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 57
R+ ++E LL NHPLDCP+CD+ GEC+LQD + G D R+
Sbjct: 1 RKTILELLLANHPLDCPVCDKNGECELQDLAYELGVDEQRY 41
Score = 68.8 bits (169), Expect = 7e-17
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 91 REGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 131
R+ ++E LL NHPLDCP+CD+ GEC+LQD + G D R+
Sbjct: 1 RKTILELLLANHPLDCPVCDKNGECELQDLAYELGVDEQRY 41
>gnl|CDD|140326 PTZ00305, PTZ00305, NADH:ubiquinone oxidoreductase; Provisional.
Length = 297
Score = 69.7 bits (170), Expect = 4e-15
Identities = 28/59 (47%), Positives = 41/59 (69%)
Query: 1 MKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTD 59
+ G + T+S + R AREG +E +L+NHP DCPIC+Q CDLQ+ SM +G+D R+ +
Sbjct: 135 LPGMSIITDSRLVRDAREGNVELILINHPNDCPICEQATNCDLQNVSMNYGTDIPRYKE 193
Score = 62.0 bits (150), Expect = 3e-12
Identities = 24/44 (54%), Positives = 33/44 (75%)
Query: 90 AREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTD 133
AREG +E +L+NHP DCPIC+Q CDLQ+ SM +G+D R+ +
Sbjct: 150 AREGNVELILINHPNDCPICEQATNCDLQNVSMNYGTDIPRYKE 193
>gnl|CDD|236170 PRK08166, PRK08166, NADH dehydrogenase subunit G; Validated.
Length = 791
Score = 65.4 bits (160), Expect = 2e-13
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 3 GWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 57
G + + + R V+E+L+ NHP DCP+C++GG C LQD ++ G R+
Sbjct: 74 GTFISIDDPEAKAFRASVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRY 128
Score = 63.8 bits (156), Expect = 8e-13
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 91 REGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 131
R V+E+L+ NHP DCP+C++GG C LQD ++ G R+
Sbjct: 88 RASVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRY 128
>gnl|CDD|225918 COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General
function prediction only].
Length = 978
Score = 61.7 bits (150), Expect = 4e-12
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 3 GWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQG-GECDLQDQSMAFGSDRSRFTD 59
G V+TNSE + AR M+ +L NHPL C +CD G+C+L + MA G R+
Sbjct: 71 GMVVRTNSERVKEARREAMDRILSNHPLYCTVCDNNNGDCELHNMVMALGLTEQRYPY 128
Score = 54.4 bits (131), Expect = 2e-09
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 90 AREGVMEFLLVNHPLDCPICDQG-GECDLQDQSMAFGSDRSRFTD 133
AR M+ +L NHPL C +CD G+C+L + MA G R+
Sbjct: 84 ARREAMDRILSNHPLYCTVCDNNNGDCELHNMVMALGLTEQRYPY 128
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 58.9 bits (143), Expect = 3e-11
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 17/76 (22%)
Query: 73 KLFLSELSGKRESTC-APAREG----------------VMEFLLVNHPLDCPICDQGGEC 115
+L + E GKR +C A+EG +M+ VNHPL+C +CD+ GEC
Sbjct: 46 RLCMVEADGKRVYSCNTKAKEGMNILTNTPNLMDERNAIMQTYDVNHPLECGVCDKSGEC 105
Query: 116 DLQDQSMAFGSDRSRF 131
+LQ+ + G + +
Sbjct: 106 ELQNFTHEMGVNHQPY 121
Score = 56.6 bits (137), Expect = 2e-10
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 3 GWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFT--DI 60
G + TN+ R +M+ VNHPL+C +CD+ GEC+LQ+ + G + + D
Sbjct: 67 GMNILTNTPNLMDERNAIMQTYDVNHPLECGVCDKSGECELQNFTHEMGVNHQPYAIKDT 126
Query: 61 DFSGKRWG 68
K WG
Sbjct: 127 HKPHKHWG 134
>gnl|CDD|181037 PRK07569, PRK07569, bidirectional hydrogenase complex protein HoxU;
Validated.
Length = 234
Score = 42.7 bits (101), Expect = 1e-05
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 1 MKGWRVKTNSEMTRRAREGVMEFLLV--NHPLDCPICDQGGECDLQDQSMAFGSDRSRFT 58
+G V+TN+ + R ++E L NH C +C G C+LQD ++ G D RF
Sbjct: 69 AEGMVVQTNTPRLQEYRRMIVELLFAEGNHV--CAVCVANGNCELQDLAIEVGMDHVRFP 126
Query: 59 ------DIDFSGKRWG 68
+D S R+G
Sbjct: 127 YLFPRRPVDISHPRFG 142
Score = 31.9 bits (73), Expect = 0.063
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 91 REGVMEFLLV--NHPLDCPICDQGGECDLQDQSMAFGSDRSRFT 132
R ++E L NH C +C G C+LQD ++ G D RF
Sbjct: 85 RRMIVELLFAEGNHV--CAVCVANGNCELQDLAIEVGMDHVRFP 126
>gnl|CDD|222871 PHA02553, 6, baseplate wedge subunit; Provisional.
Length = 611
Score = 26.9 bits (60), Expect = 4.2
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 54 RSRFTDIDFSGKRWGYL 70
+ F D DF G R L
Sbjct: 26 QDEFKDYDFEGSRLNVL 42
>gnl|CDD|184640 PRK14351, ligA, NAD-dependent DNA ligase LigA; Provisional.
Length = 689
Score = 26.6 bits (59), Expect = 5.8
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Query: 11 EMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAF 50
E+ + EG EF P CP+CD E +D +AF
Sbjct: 410 EVVEKDSEGTFEF-----PDTCPVCDSAVE---RDGPLAF 441
>gnl|CDD|234929 PRK01259, PRK01259, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 309
Score = 25.8 bits (58), Expect = 8.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 85 STCAPAREGVMEFLL 99
STCAP + +ME L+
Sbjct: 55 STCAPTNDNLMELLI 69
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.440
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,845,861
Number of extensions: 573127
Number of successful extensions: 360
Number of sequences better than 10.0: 1
Number of HSP's gapped: 357
Number of HSP's successfully gapped: 33
Length of query: 139
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 52
Effective length of database: 7,078,804
Effective search space: 368097808
Effective search space used: 368097808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.5 bits)