RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3842
         (139 letters)



>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain
           {Clostridium pasteurianum [TaxId: 1501]}
          Length = 126

 Score = 81.5 bits (201), Expect = 2e-21
 Identities = 11/57 (19%), Positives = 22/57 (38%)

Query: 1   MKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 57
             G  + TNS+      +  +  LL  H   C  C++   C+     + + +  S+ 
Sbjct: 67  EDGMIINTNSDAVNEKIKSRISQLLDIHEFKCGPCNRRENCEFLKLVIKYKARASKP 123



 Score = 71.9 bits (176), Expect = 9e-18
 Identities = 7/42 (16%), Positives = 16/42 (38%)

Query: 90  AREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 131
             +  +  LL  H   C  C++   C+     + + +  S+ 
Sbjct: 82  KIKSRISQLLDIHEFKCGPCNRRENCEFLKLVIKYKARASKP 123


>d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3,
          Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]}
          Length = 151

 Score = 62.8 bits (152), Expect = 4e-14
 Identities = 23/48 (47%), Positives = 36/48 (75%)

Query: 10 SEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 57
          S++ R A+ G++EF L+NHPLDCP CD+GG C+LQD+++ +G     +
Sbjct: 2  SDVVREAQAGMVEFTLLNHPLDCPTCDKGGACELQDRTVEYGLYEKYY 49



 Score = 57.4 bits (138), Expect = 5e-12
 Identities = 21/42 (50%), Positives = 32/42 (76%)

Query: 90  AREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 131
           A+ G++EF L+NHPLDCP CD+GG C+LQD+++ +G     +
Sbjct: 8   AQAGMVEFTLLNHPLDCPTCDKGGACELQDRTVEYGLYEKYY 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.440 

Gapped
Lambda     K      H
   0.267   0.0575    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 515,648
Number of extensions: 21241
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 6
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.6 bits)